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jrjhealey/Orthologies_over_time.tsv

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Results of HHPred homology queries
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Orthologies_over_time.tsv
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PVCpnf_1 PAU_03353 PAU_03392 5W5F 5W5F_F 99.4 1.7e-16 2.8e-21 108.8 >5W5F_F Tail tube protein gp19; T4 tail tube, dose limit;{Enterobacteria phage T4 sensu lato}
PVCpnf_2 PAU_03352 PAU_03391 3J9Q 3J9Q_B 100.0 3.6e-34 6e-39 243.2 >3J9Q_B sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCpnf_3 PAU_03351 PAU_03390 3J9Q 3J9Q_B 99.9 8.9e-32 1.5e-36 234.4 >3J9Q_B sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCpnf_4 PAU_03350 PAU_03389 3J9Q 3J9Q_B 99.9 9.3e-28 1.6e-32 207.6 >3J9Q_B sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCpnf_5 PAU_03349 PAU_03388 5IV5 5IV5_I 99.0 2.4e-13 4e-18 93.6 >5IV5_IB Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCpnf_6 PAU_03348 PAU_03387 3SLS 3SLS_B 75.1 1.5 2.5e-05 26.7 >3SLS_B Dual specificity mitogen-activated protein kinase; Serine-threonine kinase, Signalling, TRANSFERASE-TRANSFERASE INHIBITOR; HET: 77D, ANP; 2.3A {Homo sapiens}
PVCpnf_7 PAU_03347 PAU_03386 3KXY 3KXY_V 43.4 14.0 0.00024 28.1 >3KXY_V Exoenzyme S synthesis protein C; type-three secretion system, TTSS, T3SS; 2.804A {Pseudomonas aeruginosa}
PVCpnf_8 PAU_03346 PAU_03385 2P5Z 2P5Z_X 99.9 3.4e-28 5.7e-33 219.2 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVCpnf_9 PAU_03345 PAU_03384 2IA7 2IA7_A 99.5 3.6e-18 6e-23 113.3 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVCpnf_10 PAU_03344 PAU_03383 1WEY 1WEY_A 71.0 2.2 3.7e-05 26.9 >1WEY_A calcipressin 1; structural genomics, RRM domain, calcipressin; NMR {Mus musculus} SCOP: d.58.7.1
PVCpnf_11 PAU_03343 PAU_03382 5IV5 5IV5_E 96.4 7.6e-05 1.3e-09 79.3 >5IV5_EA Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCpnf_12 PAU_03342 PAU_03381 5CER 5CER_K 30.8 31 0.00052 35.6 >5CER_K Bd0816 (E.C.3.4.16.4), Bd3460; transpeptidase and ankyrin repeat, immune; 2.48A {Bdellovibrio bacteriovorus HD100}
PVCpnf_13 PAU_03341 PAU_03380 2XGF 2XGF_C 91.6 0.049 8.3e-07 50.0 >2XGF_C LONG TAIL FIBER PROTEIN P37; VIRAL PROTEIN, FIBER PROTEIN; 2.2A {ENTEROBACTERIA PHAGE T4}
PVCpnf_14 PAU_03340 PAU_03379 3C9P 3C9P_A 28.5 36.0 0.00061 31.5 >3C9P_A Uncharacterized protein SP1917; Streptococcus pneumoniae, SP_1917, Structural Genomics; 1.96A {Streptococcus pneumoniae}
PVCpnf_15 PAU_03339 PAU_03378 5E7P 5E7P_A 99.7 6.9e-22 1.2e-26 195.8 >5E7P_A Cell division control protein Cdc48; AAA ATPase, M. Smegmatic, RecA; HET: GOL, PGE, PG4, ADP; 2.507A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
PVCpnf_16 PAU_03338 PAU_03377 3UV1 3UV1_B 22.7 54 0.00092 25.1 >3UV1_B Der f 7 allergen; Super-roll, ALLERGEN; HET: MSE; 2.0A {Dermatophagoides farinae}
PVCpnf_17 PAU_03337 PAU_03376 2COL 2COL_A 96.8 1.6e-05 2.6e-10 74.8 >2COL_A Bifunctional hemolysin-adenylate cyclase (E.C.4.6.1.1); LYASE, Calcium binding, LYASE-METAL BINDING; 2.2A {Bordetella pertussis}
PVCpnf_18 PAU_03336 PAU_03375 4TNO 4TNO_A 69.5 2.5 4.2e-05 24.4 >4TNO_A HYPOTHETICAL PROTEIN PF1117; SULFUR SAD, hydrolase; 2.14A {Pyrococcus furiosus}
PVCpnf_19 PAU_03334 PAU_03374 3L3U 3L3U_B 70.4 2.3 3.9e-05 22.6 >3L3U_B POL polyprotein; DNA INTEGRATION, AIDS, INTEGRASE, ENDONUCLEASE; HET: SO4; 1.4A {Human immunodeficiency virus 1}
PVCpnf_20 PAU_03333 PAU_03373 5Z72 5Z72_B 99.7 6.4e-21 1.1e-25 119.1 >5Z72_B CcpC; CcpC, Complex, Bacillus amyloliquefaciens, Transcriptional; HET: FLC, NA; 2.4A {Bacillus velezensis FZB42}
PVCpnf_21 PAU_03332 PAU_03372 1HZG 1HZG_A 100.0 1.8e-54 3.1e-59 391.2 >1HZG_A CYTOTOXIC NECROTIZING FACTOR 1; Beta Sandwich, Rho Deamidase, Rho; HET: PO4; 1.86A {Escherichia coli} SCOP: d.194.1.1
PVCpnf_22 PAU_03331 PAU_03371 1JEO 1JEO_A 57.2 6.2 0.0001 23.6 >1JEO_A HYPOTHETICAL PROTEIN MJ1247; RuMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase; HET: CIT; 2.0A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
PVCpnf_23 PAU_03330 PAU_03370 1XJU 1XJU_A 100.0 4.3e-40 7.2e-45 226.9 >1XJU_A Lysozyme (E.C.3.2.1.17); secreted inactive conformation, HYDROLASE; HET: SO4; 1.07A {Enterobacteria phage P1} SCOP: d.2.1.3
PVCpnf_24 PAU_03329 PAU_03369 3VP9 3VP9_B 52.5 8.4 0.00014 29.8 >3VP9_B General transcriptional corepressor TUP1; Four helix bundle, TRANSCRIPTION; HET: DIO; 1.799A {Saccharomyces cerevisiae}
PVCcif_1 PAU_01993 PAU_01961 5IV5 5IV5_D 99.6 7.9e-19 1.3e-23 120.3 >5IV5_DE Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCcif_2 PAU_01994 PAU_01962 3J9Q 3J9Q_B 99.9 3.2e-31 5.4e-36 225.9 >3J9Q_B sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCcif_3 PAU_01995 PAU_01963 3J9Q 3J9Q_B 99.9 3.8e-28 6.4e-33 214.6 >3J9Q_B sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCcif_4 PAU_01996 PAU_01964 3J9Q 3J9Q_B 99.9 1e-28 1.7e-33 212.9 >3J9Q_B sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCcif_5 PAU_01997 PAU_01965 5IV5 5IV5_B 99.0 3.8e-13 6.4e-18 92.6 >5IV5_BB Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCcif_6 PAU_01998 PAU_01966 1IV8 1IV8_A 42.6 15 0.00026 29.0 >1IV8_A MALTOOLIGOSYL TREHALOSE SYNTHASE(E.C.5.4.99.15); TREHALOSE SYNTHASE, BETA ALPHA BARREL; 1.9A {Sulfolobus acidocaldarius} SCOP: b.71.1.1, c.1.8.1
PVCcif_7 PAU_01999 PAU_01967 5A3C 5A3C_A 62.8 4.2 7.1e-05 33.0 >5A3C_A SIR2 FAMILY PROTEIN (E.C.2.4.2.30); TRANSFERASE, ADP-RIBOSYLTRANSFERASE, METALLOPROTEIN, NAD-DEPENDENT, LIPOYLATION; HET: NAD, GLY; 2.03A {STREPTOCOCCUS PYOGENES}
PVCcif_8 PAU_02000 PAU_01968 2P5Z 2P5Z_X 99.9 3.5e-29 5.9e-34 225.3 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVCcif_9 PAU_02001 PAU_01969 2IA7 2IA7_A 99.6 6e-20 1e-24 122.6 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVCcif_10 PAU_02002 PAU_01970 1JWB 1JWB_B 40.6 17 0.00029 24.8 >1JWB_B MOLYBDOPTERIN BIOSYNTHESIS MOEB PROTEIN, MOLYBDOPTERIN; MoeB: modified Rossmann fold ; HET: AMP; 2.1A {Escherichia coli} SCOP: c.111.1.1
PVCcif_11 PAU_02003 PAU_01971 3H2T 3H2T_A 96.3 0.00012 1.9e-09 74.9 >3H2T_A Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVCcif_12 PAU_02004 PAU_01972 4ORL 4ORL_A 57.3 6.1 0.0001 36.3 >4ORL_A Uncharacterized protein; PF16022 family, DUF4783, Structural Genomics; 1.4A {Bacteroides ovatus}
PVCcif_13 PAU_02005 PAU_01973 2FKK 2FKK_A 97.0 5.2e-06 8.7e-11 69.7 >2FKK_A Baseplate structural protein Gp10; Bacteriophage T4 Baseplate ; HET: EDO; 1.2A {Enterobacteria phage T4}
PVCcif_14 PAU_02006 PAU_01974 3KDE 3KDE_C 17.7 82.0 0.0014 23.2 >3KDE_C PROTEIN/DNA Complex; THAP domain, DNA-binding domain, zinc-finger; 1.74A {Drosophila melanogaster}
PVCcif_15 PAU_02007 PAU_01975 5E7P 5E7P_A 99.7 3.5e-22 5.8e-27 197.6 >5E7P_A Cell division control protein Cdc48; AAA ATPase, M. Smegmatic, RecA; HET: GOL, PGE, PG4, ADP; 2.507A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
PVCcif_16 PAU_02008 PAU_01976 4I4M 4I4M_6 51.5 8.8 0.00015 27.2 >4I4M_6 50S ribosomal protein LX; 50S ribosomal subunit, ribonucleoprotein, ribosomal; 2.404A {Haloarcula marismortui}
PVCcif_17 PAU_02009 PAU_01977 4FBJ 4FBJ_A 100.0 2e-98 3e-103 664.7 >4FBJ_A Hypothetical protein, NEDD8; Effector-Host target complex, Glutamine deamidase; 1.6A {Photorhabdus luminescens subsp. laumondii}
PVCcif_18 PAU_02010 PAU_01978 1IRF 1IRF_A 35.8 23 0.00038 28.6 >1IRF_A INTERFERON REGULATORY FACTOR-2; TRANSCRIPTION REGULATION, WINGED HELIX-TURN-HELIX; NMR {Mus musculus} SCOP: a.4.5.23
PVCcif_19 PAU_02011 PAU_01979 4JXJ 4JXJ_A 43.6 14 0.00024 30.9 >4JXJ_A Ribosomal RNA small subunit methyltransferase; Structural Genomics, NIAID, National Institute; HET: IOD; 2.0A {Rickettsia bellii}
PVCcif_20 PAU_02012 PAU_01980 3IKM 3IKM_D 30.2 32 0.00054 33.8 >3IKM_D DNA polymerase subunit gamma-1 (E.C.2.7.7.7); Human mitochondrial DNA polymerase, Disease; 3.24A {Homo sapiens}
PVClumt_0 PAU_02249 PAU_02208 6EKT 6EKT_A 99.7 6.4e-21 1.1e-25 179.4 >6EKT_A p-47 protein; lipid binding, LIPID BINDING PROTEIN; 1.75A {Clostridium botulinum (strain Kyoto / Type A2)}
PVClumt_1 PAU_02247 PAU_02206 5IV5 5IV5_B 99.4 6.4e-17 1.1e-21 110.9 >5IV5_BC Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVClumt_2 PAU_02246 PAU_02205 3J9Q 3J9Q_B 99.9 5.4e-29 9.1e-34 218.0 >3J9Q_B sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVClumt_4 PAU_02245 PAU_02204 3J9Q 3J9Q_B 99.8 9.3e-26 1.6e-30 194.0 >3J9Q_B sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVClumt_5 PAU_02244 PAU_02203 5IV5 5IV5_R 99.1 1.1e-13 1.8e-18 95.7 >5IV5_R Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVClumt_6 PAU_02243 PAU_02202 1USD 1USD_A 70.0 2.4 4.1e-05 24.3 >1USD_A VASODILATOR-STIMULATED PHOSPHOPROTEIN; SIGNALING PROTEIN, PHOSPHORYLATION, ACTIN-BINDING, KINASE; 1.7A {HOMO SAPIENS} SCOP: h.1.29.1
PVClumt_7 PAU_02242 PAU_02201 3D1B 3D1B_A 28.0 37.0 0.00063 28.4 >3D1B_A RNA-induced transcriptional silencing complex protein; all alpha motif, RITS complex; 1.7A {Schizosaccharomyces pombe}
PVClumt_8 PAU_02241 PAU_02200 2P5Z 2P5Z_X 99.8 1.6e-23 2.8e-28 188.1 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVClumt_9 PAU_02240 PAU_02199 2IA7 2IA7_A 99.5 7e-18 1.2e-22 112.8 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVClumt_10 afp10 PAU_02198 1B0A 1B0A_A 55.5 6.9 0.00012 30.1 >1B0A_A 5,10, METHYLENE-TETRAHYDROPHOLATE DEHYDROGENASE/CYCLOHYDROLASE FROM E; FOLATE, DEHYDROGENASE, CYCLCOHYDROLASE, BIFUNCTIONAL, CHANNELING; 2.56A {Escherichia coli K12} SCOP: c.2.1.7, c.58.1.2
PVClumt_11 afp11 PAU_02197 3H2T 3H2T_A 95.8 0.00042 7.1e-09 68.0 >3H2T_A Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVClumt_12 PAU_02237 PAU_02196 6BCA 6BCA_A 31.8 29 0.00049 30.2 >6BCA_A Transforming protein RhoA, A-kinase anchor; Rho GTPase Guanine Nucleotide Exchange; HET: GSP; 1.995A {Homo sapiens}
PVClumt_13 PAU_02236 PAU_02195 1V1H 1V1H_A 96.0 0.00029 4.9e-09 53.9 >1V1H_A FIBRITIN, FIBER PROTEIN; ADENOVIRUS, CHIMERA, FIBER PROTEIN; 1.9A {HUMAN ADENOVIRUS TYPE 2, BACTERIOPHAGE T4} SCOP: b.83.1.1, h.1.17.1
PVClumt_97 PAU_02235 PAU_02194 6EKT 6EKT_A 99.2 3.3e-15 5.5e-20 147.3 >6EKT_A p-47 protein; lipid binding, LIPID BINDING PROTEIN; 1.75A {Clostridium botulinum (strain Kyoto / Type A2)}
PVClumt_98 PAU_02234 PAU_02193 4AK2 4AK2_A 68.5 2.7 4.6e-05 39.1 >4AK2_A BT_4661; HEPARIN-BINDING PROTEIN, HEPARAN SULPHATE; HET: SGN, IDS; 1.35A {BACTEROIDES THETAIOTAOMICRON}
PVClumt_99 PAU_02233 PAU_02192 4PAC 4PAC_A 17.2 86.0 0.0014 26.6 >4PAC_A histidine phosphotransfer protein 2 from; cytokinin signaling, helical fold, signaling; HET: MES; 2.53A {Arabidopsis thaliana}
PVClumt_15 PAU_02232 PAU_02191 5E7P 5E7P_A 99.7 2.3e-21 4e-26 192.2 >5E7P_A Cell division control protein Cdc48; AAA ATPase, M. Smegmatic, RecA; HET: GOL, PGE, PG4, ADP; 2.507A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
PVClumt_16 PAU_02231 PAU_02190 1PDO 1PDO_A 57.1 6.2 0.0001 30.2 >1PDO_A MANNOSE PERMEASE; PHOSPHOENOLPYRUVATE DEPENDENT PHOSPHOTRANSFERASE SYSTEM, PHOSPHOTRANSFERASE; 1.7A {Escherichia coli} SCOP: c.54.1.1
PVClumt_17 PAU_02230 PAU_02189 4MIX 4MIX_B 100.0 3.7e-50 6.3e-55 429.5 >4MIX_B Putative insecticidal toxin (E.C.2.4.1.-); tyrosine glycosylation, UDP-GlcNAc, nucleotide-binding domain; HET: UD1; 1.8A {Photorhabdus asymbiotica subsp. asymbiotica}
PVClopT_1 PAU_02112 PAU_02074 5IV5 5IV5_S 99.4 5.4e-17 9.1e-22 110.8 >5IV5_S Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVClopT_2 PAU_02111 PAU_02073 3J9Q 3J9Q_B 100.0 8e-34 1.3e-38 240.5 >3J9Q_B sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVClopT_4 PAU_02110 PAU_02072 3J9Q 3J9Q_B 99.9 1.2e-30 2.1e-35 224.2 >3J9Q_B sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVClopT_5 PAU_02109 PAU_02071 5IV5 5IV5_D 99.0 4.9e-13 8.2e-18 92.0 >5IV5_DF Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVClopT_6 PAU_02108 PAU_02070 5EUL 5EUL_E 64.4 3.8 6.3e-05 24.0 >5EUL_E SecA, SecY, SecE, AYC08; SecY, SecA, ATPase, channel, PROTEIN; HET: ADP, TBR; 3.7A {Bacillus subtilis (strain 168)}
PVClopT_7 PAU_02107 PAU_02069 5ABD 5ABD_X 29.9 33 0.00056 23.2 >5ABD_X VASCULAR ENDOTHELIAL GROWTH FACTOR RECEPTOR; SIGNALING PROTEIN, VEGF, RECEPTOR; HET: SO4; 1.995A {HOMO SAPIENS}
PVClopT_8 PAU_02106 PAU_02068 2P5Z 2P5Z_X 99.9 8e-31 1.3e-35 235.8 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVClopT_9 PAU_02105 PAU_02067 2IA7 2IA7_A 99.6 5.6e-20 9.5e-25 121.9 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVClopT_10 PAU_02104 PAU_02066 5FMJ 5FMJ_B 50.9 9.2 0.00016 23.4 >5FMJ_B BCL-2-LIKE PROTEIN 1, BAK1 PROTEIN; BCL-XL, BAK, BH3 DOMAIN, APOPTOSIS; HET: EDO; 2.43A {HOMO SAPIENS}
PVClopT_11 PAU_02103 PAU_02065 3H2T 3H2T_A 96.4 8.4e-05 1.4e-09 78.8 >3H2T_A Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVClopT_12 PAU_02102 PAU_02064 1PQX 1PQX_A 38.8 19 0.00032 31.7 >1PQX_A conserved hypothetical protein; ZR18,NMR structure, AUTOSTRUCTURE,SPINS,AUTOASSIGN, Northeast Structural; NMR {Staphylococcus aureus subsp. aureus Mu50} SCOP: d.267.1.1
PVClopT_14 PAU_02101 PAU_02063 2GOM 2GOM_A 21.2 61.0 0.001 26.8 >2GOM_A Fibrinogen-binding protein; three-helix closed bundle with left-hand; 1.25A {Staphylococcus aureus} SCOP: a.7.17.1
PVClopT_15 PAU_02100 PAU_02062 5E7P 5E7P_A 99.7 1.3e-21 2.2e-26 193.6 >5E7P_A Cell division control protein Cdc48; AAA ATPase, M. Smegmatic, RecA; HET: GOL, PGE, PG4, ADP; 2.507A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
PVClopT_16 PAU_02099 PAU_02061 3OIZ 3OIZ_A 23.6 51.0 0.00086 21.8 >3OIZ_A Antisigma-factor antagonist, STAS; PSI-2, Midwest Center for Structural; 1.65A {Rhodobacter sphaeroides}
PVClopT_17 PAU_02098 PAU_02060 2EC5 2EC5_A 100.0 1e-84 1.8e-89 669.9 >2EC5_A Dermonecrotic toxin; Pasteurella multocida toxin, Cys1159Ser mutant; 2.6A {Pasteurella multocida} SCOP: d.3.1.17, c.150.1.2, a.296.1.1
PVClopT_18 PAU_02097 PAU_02059 5O9Z 5O9Z_Q 64.0 3.9 6.6e-05 37.9 >5O9Z_Q Pre-mRNA-processing-splicing factor 8, 116 kDa; Spliceosome, pre-mRNA splicing, macromolecular complex; 4.5A {Homo sapiens}
PVClopT_19 PAU_02096 PAU_02058 1UKF 1UKF_A 99.8 9.8e-25 1.6e-29 182.9 >1UKF_A Avirulence protein AVRPPH3; AvrPphB, AvrPph3, Avirulence, Hypersensitive Response; 1.35A {Pseudomonas syringae pv. phaseolicola} SCOP: d.3.1.10
PVClopT_20 PAU_02095 PAU_02057 4IGL 4IGL_B 100.0 2e-55 3.3e-60 420.2 >4IGL_B YenB, YenC2; Beta-Propeller, RHS, toxin complex, Toxin; HET: GOL; 2.49A {Yersinia}
PVCunit1_1 afp1 PAU_02775 5IV5 5IV5_R 99.5 1.9e-17 3.2e-22 113.5 >5IV5_R Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCunit1_2 afp2 PAU_02776 3J9Q 3J9Q_B 100.0 1.1e-35 1.9e-40 252.7 >3J9Q_B sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit1_3 afp3 PAU_02777 3J9Q 3J9Q_B 100.0 1e-34 1.7e-39 254.8 >3J9Q_B sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit1_4 afp4 PAU_02778 3J9Q 3J9Q_B 99.9 4e-29 6.7e-34 215.6 >3J9Q_B sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit1_5 afp5 PAU_02779 5IV5 5IV5_F 99.1 1.1e-13 1.9e-18 95.1 >5IV5_FH Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCunit1_6 afp7 PAU_02780 4E71 4E71_A 47.5 11 0.00019 23.5 >4E71_A Plexin-B2; plexin, transmembrane, signaling, rbd, Structural; 2.26A {Homo sapiens}
PVCunit1_7 afp7 PAU_02781 5A3A 5A3A_A 59.7 5.2 8.8e-05 32.5 >5A3A_A SIR2 FAMILY PROTEIN (E.C.2.4.2.30); TRANSFERASE, P-RIBOSYLTRANSFERASE, METALLOPROTEIN, NAD-DEPENDENT, LIPOYLATION; HET: EDO, GLY; 1.54A {STREPTOCOCCUS PYOGENES}
PVCunit1_8 PAU_02796 PAU_02782 2P5Z 2P5Z_X 99.9 2.8e-32 4.7e-37 245.2 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVCunit1_9 afp9 PAU_02783 2IA7 2IA7_A 99.6 4.7e-19 7.8e-24 118.4 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVCunit1_10 afp10 PAU_02784 1YOV 1YOV_C 43.2 15 0.00025 30.9 >1YOV_C Amyloid protein-binding protein 1, Ubiquitin-activating; ubiquitin, NEDD8, E1, APPBP1, UBA3; 2.6A {Homo sapiens} SCOP: c.111.1.2
PVCunit1_11 afp11 PAU_02785 3H2T 3H2T_A 96.4 7.1e-05 1.2e-09 76.4 >3H2T_A Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVCunit1_12 afp12 PAU_02786 2JY7 2JY7_A 22.9 54.0 0.00091 28.5 >2JY7_A Ubiquitin-binding protein p62; ubiquitin binding, ubiquitin associated domain; NMR {Homo sapiens} SCOP: a.5.2.1
PVCunit1_13 PAU_02801 PAU_02787 2FKK 2FKK_A 97.8 5.2e-08 8.7e-13 85.0 >2FKK_A Baseplate structural protein Gp10; Bacteriophage T4 Baseplate ; HET: EDO; 1.2A {Enterobacteria phage T4}
PVCunit1_14 orf25 PAU_02788 4I7W 4I7W_A 24.8 47.0 0.00079 30.2 >4I7W_A Dihydrodipicolinate synthase (E.C.4.2.1.52); TIM BARREL, lysine biosynthesis, pyruvate; HET: LYS; 1.3A {Agrobacterium sp.}
PVCunit1_15 PAU_02803 PAU_02789 5E7P 5E7P_A 99.8 7.9e-24 1.3e-28 209.3 >5E7P_A Cell division control protein Cdc48; AAA ATPase, M. Smegmatic, RecA; HET: GOL, PGE, PG4, ADP; 2.507A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
PVCunit1_16 PAU_02804 PAU_02790 3FM2 3FM2_A 24.5 48.0 0.0008 25.5 >3FM2_A Uncharacterized protein, distantly related to; STRUCTURAL GENOMICS, JOINT CENTER FOR; HET: ACT; 1.8A {Anabaena variabilis ATCC 29413}
PVCunit1_17 hrpN PAU_02791 2I88 2I88_A 79.9 0.85 1.4e-05 40.9 >2I88_A Colicin-E1; protein-membrane interactions, toxin-membrane interactions, toxin; 2.5A {Escherichia coli}
PVCunit1_18 PAU_02806 PAU_02792 5SVA 5SVA_V 36.3 22 0.00037 31.7 >5SVA_V DNA-directed RNA polymerase II subunit; Transcriptional Initiation, Mediator, Pre-Initiation Complex; 15.3A {Saccharomyces cerevisiae}
PVCunit1_19 PAU_02807 PAU_02793 5E24 5E24_B 26.0 43 0.00072 24.2 >5E24_B Maltose-binding periplasmic protein, Protein hairless; Notch Signaling, Suppressor of Hairless; HET: MTT, EDO; 2.14A {Escherichia coli O157:H7}
PVCunit1_20 PAU_02808 PAU_02794 2XR4 2XR4_A 100.0 2.2e-34 3.8e-39 230.8 >2XR4_A LECTIN; SUGAR BINDING PROTEIN, LUNG, PATHOGEN; HET: SO4; 1.9A {BURKHOLDERIA CENOCEPACIA}
PVCpnf_1 PAK_3544 PAK_03203 5IV5 5IV5_B 99.4 4.7e-17 8e-22 111.5 >5IV5_BC Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCpnf_2 PAK_3543 PAK_03202 3J9Q 3J9Q_B 100.0 5.7e-34 9.6e-39 241.9 >3J9Q_B sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCpnf_3 PAK_3542 PAK_03201 3J9Q 3J9Q_B 99.9 4.5e-31 7.7e-36 230.3 >3J9Q_B sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCpnf_4 PAK_3541 PAK_03200 3J9Q 3J9Q_B 99.9 2.3e-28 3.9e-33 210.9 >3J9Q_B sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCpnf_5 PAK_3540 PAK_03199 5IV5 5IV5_B 99.0 2.1e-13 3.6e-18 93.8 >5IV5_BC Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCpnf_6 PAK_3539 PAK_03198 3SLS 3SLS_B 75.1 1.5 2.5e-05 26.7 >3SLS_B Dual specificity mitogen-activated protein kinase; Serine-threonine kinase, Signalling, TRANSFERASE-TRANSFERASE INHIBITOR; HET: 77D, ANP; 2.3A {Homo sapiens}
PVCpnf_7 PAK_3538 PAK_03197 4LID 4LID_B 25.8 43.0 0.00073 27.5 >4LID_B A-100; VIRAL PROTEIN, Hyperthermophilic viral protein; 3.0A {Sulfolobus spindle-shaped virus 1}
PVCpnf_8 PAK_3537 PAK_03196 2P5Z 2P5Z_X 99.9 2.2e-28 3.7e-33 220.4 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVCpnf_9 PAK_3536 PAK_03195 2IA7 2IA7_A 99.5 8.4e-18 1.4e-22 111.5 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVCpnf_10 PAK_3535 PAK_03194 1UKF 1UKF_A 56.9 6.3 0.00011 30.5 >1UKF_A Avirulence protein AVRPPH3; AvrPphB, AvrPph3, Avirulence, Hypersensitive Response; 1.35A {Pseudomonas syringae pv. phaseolicola} SCOP: d.3.1.10
PVCpnf_11 PAK_3534 PAK_03193 3H2T 3H2T_A 96.2 0.00014 2.3e-09 72.7 >3H2T_A Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVCpnf_12 PAK_3533 PAK_03192 1IBV 1IBV_E 28.4 36.0 0.00061 31.3 >1IBV_E HISTIDINE DECARBOXYLASE BETA CHAIN (E.C.4.1.1.22)/HISTIDINE; SUBSTRATE-INDUCED ACTIVATION, ACTIVE FORM, SITE-DIRECTED; HET: PVH, PYR; 2.5A {Lactobacillus sp.} SCOP: d.155.1.1
PVCpnf_13 PAK_3532 PAK_03191 2FKK 2FKK_A 96.9 8.6e-06 1.4e-10 71.8 >2FKK_A Baseplate structural protein Gp10; Bacteriophage T4 Baseplate ; HET: EDO; 1.2A {Enterobacteria phage T4}
PVCpnf_14 PAK_3531 PAK_03190 5JY5 5JY5_A 26.3 42.0 0.00071 23.5 >5JY5_A Thioredoxin; Thioredoxin 1 Cryptococcus neoformans X-ray; HET: SO4, GOL; 1.8A {Cryptococcus neoformans var. grubii serotype A}
PVCpnf_15 PAK_3530 PAK_03189 5E7P 5E7P_A 99.7 1.7e-22 2.9e-27 200.0 >5E7P_A Cell division control protein Cdc48; AAA ATPase, M. Smegmatic, RecA; HET: GOL, PGE, PG4, ADP; 2.507A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
PVCpnf_16 PAK_3529 PAK_03188 3T5S 3T5S_A 34.5 25 0.00041 26.1 >3T5S_A Macrophage migration inhibitory factor; SSGCID, Structural Genomics, Seattle Structural; 2.3A {Giardia lamblia}
PVCpnf_17 PAK_3527 PAK_03187 4WYQ 4WYQ_E 44.5 13 0.00023 18.2 >4WYQ_E Dicer (E.C.3.1.26.3), Trans-activation-responsive RNA-binding protein; RNA interference, microRNA, dsRBP, dsRBD; 3.2A {Homo sapiens}
PVCpnf_18 PAK_3526 PAK_03186 3SZP 3SZP_A 99.7 3.5e-21 5.9e-26 120.2 >3SZP_A Transcriptional regulator, LysR family; winged helix-turn helix, DNA-binding, transcription; 2.202A {Vibrio cholerae}
PVCpnf_19 PAK_3525 PAK_03185 4MIX 4MIX_A 99.9 9.2e-32 1.6e-36 228.1 >4MIX_A Putative insecticidal toxin (E.C.2.4.1.-); tyrosine glycosylation, UDP-GlcNAc, nucleotide-binding domain; HET: UD1; 1.8A {Photorhabdus asymbiotica subsp. asymbiotica}
PVCpnf_20 PAK_3524 PAK_03184 4LDE 4LDE_A 99.4 2.1e-16 3.5e-21 97.6 >4LDE_A Lysozyme, Beta-2 adrenergic receptor (E.C.3.2.1.17); G protein coupled receptor, MEMBRANE; HET: P0G, 1WV; 2.79A {Enterobacteria phage T4, Homo sapiens}
PVCpnf_21 PAK_3523 PAK_03183 3HDF 3HDF_B 99.7 1.6e-21 2.7e-26 119.9 >3HDF_B Lysozyme (E.C.3.2.1.17); lysozyme-like, Antimicrobial, Bacteriolytic enzyme, Glycosidase; HET: GOL, NO3; 1.7A {Enterobacteria phage P21}
PVCpnf_22 PAK_3522 PAK_03182 5KKV 5KKV_A 62.7 4.3 7.2e-05 26.0 >5KKV_A GCN4-p2L; GCN4 coiled-coil, PROTEIN FIBRIL; 1.9A {N/A}
PVCpnf_23 PAK_3521 PAK_03181 1XJU 1XJU_A 100.0 2e-40 3.4e-45 228.5 >1XJU_A Lysozyme (E.C.3.2.1.17); secreted inactive conformation, HYDROLASE; HET: SO4; 1.07A {Enterobacteria phage P1} SCOP: d.2.1.3
PVCcif_1 PAK_1969 PAK_01787 5IV5 5IV5_D 99.6 1.1e-18 1.8e-23 119.6 >5IV5_DF Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCcif_2 PAK_1970 PAK_01788 3J9Q 3J9Q_B 99.9 4.9e-32 8.3e-37 231.0 >3J9Q_B sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCcif_3 PAK_1971 PAK_01789 3J9Q 3J9Q_B 99.9 1e-29 1.7e-34 224.5 >3J9Q_B sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCcif_4 PAK_1972 PAK_01790 3J9Q 3J9Q_B 99.9 8e-29 1.4e-33 213.5 >3J9Q_B sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCcif_5 PAK_1973 PAK_01791 5IV5 5IV5_D 98.9 6.5e-13 1.1e-17 91.4 >5IV5_DE Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCcif_6 PAK_1974 PAK_01792 3RJR 3RJR_C 45.6 13 0.00021 24.9 >3RJR_C Transforming growth factor beta-1; TGF beta, activation, integrin, Cytokine; HET: NAG; 3.05A {Sus scrofa}
PVCcif_7 PAK_1975 PAK_01793 5A3A 5A3A_A 66.2 3.3 5.6e-05 33.6 >5A3A_A SIR2 FAMILY PROTEIN (E.C.2.4.2.30); TRANSFERASE, P-RIBOSYLTRANSFERASE, METALLOPROTEIN, NAD-DEPENDENT, LIPOYLATION; HET: EDO, GLY; 1.54A {STREPTOCOCCUS PYOGENES}
PVCcif_8 PAK_1976 PAK_01794 2P5Z 2P5Z_X 99.9 3.6e-30 6.1e-35 231.6 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVCcif_9 PAK_1977 PAK_01795 2IA7 2IA7_A 99.6 1.8e-19 3.1e-24 120.3 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVCcif_10 PAK_1978 PAK_01796 5C2Y 5C2Y_A 35.5 23 0.00039 27.4 >5C2Y_A RNA polymerase II subunit B1; regulator of transcription, zinc finger; HET: SO4; 2.6A {Saccharomyces cerevisiae}
PVCcif_11 PAK_1979 PAK_01797 3H2T 3H2T_A 96.3 0.0001 1.7e-09 75.1 >3H2T_A Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVCcif_12 PAK_1980 PAK_01798 6BCA 6BCA_A 63.8 3.9 6.7e-05 35.6 >6BCA_A Transforming protein RhoA, A-kinase anchor; Rho GTPase Guanine Nucleotide Exchange; HET: GSP; 1.995A {Homo sapiens}
PVCcif_13 PAK_1981 PAK_01799 2FKK 2FKK_A 97.3 1.6e-06 2.8e-11 72.6 >2FKK_A Baseplate structural protein Gp10; Bacteriophage T4 Baseplate ; HET: EDO; 1.2A {Enterobacteria phage T4}
PVCcif_14 PAK_1982 PAK_01800 3Q1C 3Q1C_A 19.4 71.0 0.0012 34.2 >3Q1C_A LEE-encoded effector EspG; VirA fold, virulence factor, PAK; 1.596A {Escherichia coli O127:H6}
PVCcif_15 PAK_1983 PAK_01801 5E7P 5E7P_A 99.6 2.9e-20 5e-25 184.1 >5E7P_A Cell division control protein Cdc48; AAA ATPase, M. Smegmatic, RecA; HET: GOL, PGE, PG4, ADP; 2.507A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
PVCcif_16 PAK_1984 PAK_01802 3FXD 3FXD_B 34.1 25.0 0.00043 28.1 >3FXD_B Protein IcmQ, Protein IcmR; 4 helix bundle, helix-turn-helix, UNKNOWN; 2.1A {Legionella pneumophila}
PVCcif_17 PAK_1985 PAK_01803 4FBJ 4FBJ_A 100.0 8.7e-93 1.5e-97 629.0 >4FBJ_A Hypothetical protein, NEDD8; Effector-Host target complex, Glutamine deamidase; 1.6A {Photorhabdus luminescens subsp. laumondii}
PVCcif_18 PAK_1986 PAK_01804 2I71 2I71_B 28.5 36 0.00061 31.7 >2I71_B Hypothetical protein; Structural Genomics, APC6294, Conserved hypothetical; 1.7A {Sulfolobus solfataricus} SCOP: e.72.1.1
PVCcif_19 PAK_1987 PAK_01805 1LTA 1LTA_A 97.5 3.7e-07 6.2e-12 71.9 >1LTA_A HEAT-LABILE ENTEROTOXIN (LT) COMPLEX WITH; ENTEROTOXIN; HET: GAL; 2.2A {Escherichia coli} SCOP: d.166.1.1
PVCcif_20 PAK_1988 PAK_01806 5NB9 5NB9_A 61.0 4.8 8.1e-05 32.3 >5NB9_A RNA chaperone ProQ; FinO, ProQ, RNA, chaperone; NMR {Escherichia coli O45:K1 (strain S88 / ExPEC)}
PVClumt_0 PAK_2217 PAK_02015 6EKT 6EKT_A 99.6 8.5e-20 1.4e-24 171.8 >6EKT_A p-47 protein; lipid binding, LIPID BINDING PROTEIN; 1.75A {Clostridium botulinum (strain Kyoto / Type A2)}
PVClumt_1 PAK_2216 PAK_02014 5IV5 5IV5_B 99.4 5.9e-17 1e-21 111.1 >5IV5_BB Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVClumt_2 PAK_2215 PAK_02013 3J9Q 3J9Q_B 99.6 1.1e-18 1.9e-23 149.7 >3J9Q_B sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVClumt_3 PAK_2214 PAK_02012 3J9Q 3J9Q_B 97.8 5.5e-08 9.2e-13 68.7 >3J9Q_B sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVClumt_4 PAK_2213 PAK_02011 3J9Q 3J9Q_B 99.9 2.8e-26 4.7e-31 197.2 >3J9Q_B sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVClumt_5 PAK_2212 PAK_02010 5IV5 5IV5_D 99.2 2.1e-14 3.5e-19 99.1 >5IV5_DE Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVClumt_6 PAK_2211 PAK_02009 1USD 1USD_A 70.9 2.2 3.8e-05 24.5 >1USD_A VASODILATOR-STIMULATED PHOSPHOPROTEIN; SIGNALING PROTEIN, PHOSPHORYLATION, ACTIN-BINDING, KINASE; 1.7A {HOMO SAPIENS} SCOP: h.1.29.1
PVClumt_7 PAK_2210 PAK_02008 3D1B 3D1B_A 28.2 37.0 0.00062 28.4 >3D1B_A RNA-induced transcriptional silencing complex protein; all alpha motif, RITS complex; 1.7A {Schizosaccharomyces pombe}
PVClumt_8 PAK_2209 PAK_02007 2P5Z 2P5Z_X 99.8 2.4e-23 4e-28 187.1 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVClumt_9 PAK_2208 PAK_02006 2IA7 2IA7_A 99.5 1e-17 1.7e-22 112.0 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVClumt_10 PAK_2207 PAK_02005 4DK6 4DK6_C 52.8 8.2 0.00014 24.6 >4DK6_C single domain antibody VHH, RNA-editing; KREPA1, VHH, Single domain antibody; 2.65A {Lama glama}
PVClumt_11 PAK_2206 PAK_02004 5H5Z 5H5Z_B 28.7 36 0.0006 20.1 >5H5Z_B MHC class I antigen, Beta-2-microglobulin; MHC, IMMUNOLOGY, IMMUNE SYSTEM-TRANSRERASE COMPLEX; 1.74A {Ctenopharyngodon idella}
PVClumt_96 PAK_2205 PAK_02003 3H2T 3H2T_A 94.4 0.005 8.5e-08 52.9 >3H2T_A Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVClumt_12 PAK_2204 PAK_02002 1FHO 1FHO_A 30.0 33 0.00055 27.4 >1FHO_A UNC-89; Pleckstrin Homology domain, electrostatics, muscle; NMR {Caenorhabditis elegans} SCOP: b.55.1.1
PVClumt_13 PAK_2203 PAK_02001 1V1H 1V1H_A 92.6 0.027 4.5e-07 42.9 >1V1H_A FIBRITIN, FIBER PROTEIN; ADENOVIRUS, CHIMERA, FIBER PROTEIN; 1.9A {HUMAN ADENOVIRUS TYPE 2, BACTERIOPHAGE T4} SCOP: b.83.1.1, h.1.17.1
PVClumt_97 PAK_2202 PAK_02000 6EKT 6EKT_A 99.3 6e-16 1e-20 152.5 >6EKT_A p-47 protein; lipid binding, LIPID BINDING PROTEIN; 1.75A {Clostridium botulinum (strain Kyoto / Type A2)}
PVClumt_98 PAK_2201 PAK_01999 4AK2 4AK2_A 68.6 2.7 4.6e-05 39.1 >4AK2_A BT_4661; HEPARIN-BINDING PROTEIN, HEPARAN SULPHATE; HET: SGN, IDS; 1.35A {BACTEROIDES THETAIOTAOMICRON}
PVClumt_99 PAK_2200 PAK_01998 3K8P 3K8P_C 33.4 26.0 0.00044 34.3 >3K8P_C Dsl1, Protein transport protein SEC39; Intracellular trafficking, Dsl1 complex, multisubunit; 2.6A {Kluyveromyces lactis}
PVClumt_15 PAK_2199 PAK_01997 5E7P 5E7P_A 99.7 3.8e-22 6.3e-27 197.8 >5E7P_A Cell division control protein Cdc48; AAA ATPase, M. Smegmatic, RecA; HET: GOL, PGE, PG4, ADP; 2.507A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
PVClumt_16 PAK_2198 PAK_01996 1PDO 1PDO_A 56.8 6.3 0.00011 30.1 >1PDO_A MANNOSE PERMEASE; PHOSPHOENOLPYRUVATE DEPENDENT PHOSPHOTRANSFERASE SYSTEM, PHOSPHOTRANSFERASE; 1.7A {Escherichia coli} SCOP: c.54.1.1
PVClumt_17 PAK_2197 PAK_01995 1WRD 1WRD_A 44.0 14.0 0.00023 33.0 >1WRD_A Target of Myb protein 1/Ubiquitin; THREE-HELIX BUNDLE, UBIQUITIN-BINDING PROTEIN, PROTEIN; 1.75A {Bos taurus} SCOP: a.7.8.1
PVClumt_18 PAK_2195 PAK_01994 4MIX 4MIX_A 100.0 1.8e-38 3.1e-43 307.8 >4MIX_A Putative insecticidal toxin (E.C.2.4.1.-); tyrosine glycosylation, UDP-GlcNAc, nucleotide-binding domain; HET: UD1; 1.8A {Photorhabdus asymbiotica subsp. asymbiotica}
PVClopT_1 PAK_2092 PAK_01896 5IV5 5IV5_D 99.4 5.7e-17 9.7e-22 110.7 >5IV5_DE Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVClopT_2 PAK_2091 PAK_01895 3J9Q 3J9Q_B 100.0 5.4e-34 9.1e-39 241.6 >3J9Q_B sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVClopT_4 PAK_2090 PAK_01894 3J9Q 3J9Q_B 99.9 7.2e-29 1.2e-33 213.3 >3J9Q_B sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVClopT_5 PAK_2089 PAK_01893 5IV5 5IV5_D 98.9 8.3e-13 1.4e-17 90.9 >5IV5_DE Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVClopT_6 PAK_2088 PAK_01892 4F6T 4F6T_B 49.6 9.9 0.00017 24.6 >4F6T_B Molybdenum storage protein subunit beta; molybdenum storage, ATP hydrolyzation, hexamer; HET: ATP, 6M0, 8M0; 1.6A {Azotobacter vinelandii}
PVClopT_7 PAK_2087 PAK_01891 5A3A 5A3A_A 63.1 4.2 7e-05 33.0 >5A3A_A SIR2 FAMILY PROTEIN (E.C.2.4.2.30); TRANSFERASE, P-RIBOSYLTRANSFERASE, METALLOPROTEIN, NAD-DEPENDENT, LIPOYLATION; HET: EDO, GLY; 1.54A {STREPTOCOCCUS PYOGENES}
PVClopT_8 PAK_2086 PAK_01890 2P5Z 2P5Z_X 99.9 2.1e-29 3.6e-34 226.7 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVClopT_9 PAK_2085 PAK_01889 2IA7 2IA7_A 99.6 3.6e-20 6.1e-25 121.3 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVClopT_10 PAK_2084 PAK_01888 3OJO 3OJO_B 65.0 3.6 6.1e-05 32.9 >3OJO_B Cap5O; Rossmann fold, complex with cofactor; HET: NAD, PDC; 2.5A {Staphylococcus aureus}
PVClopT_11 PAK_2083 PAK_01887 3H2T 3H2T_A 96.0 0.00026 4.3e-09 75.2 >3H2T_A Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVClopT_12 PAK_2082 PAK_01886 1PQX 1PQX_A 35.9 23 0.00038 31.3 >1PQX_A conserved hypothetical protein; ZR18,NMR structure, AUTOSTRUCTURE,SPINS,AUTOASSIGN, Northeast Structural; NMR {Staphylococcus aureus subsp. aureus Mu50} SCOP: d.267.1.1
PVClopT_14 PAK_2081 PAK_01885 1Z8U 1Z8U_C 28.5 36.0 0.00061 30.2 >1Z8U_C Alpha-hemoglobin stabilizing protein, Hemoglobin alpha; alpha haemoglobin, AHSP, oxidation, interaction; HET: HEM; 2.4A {Homo sapiens} SCOP: a.7.11.1
PVClopT_15 PAK_2080 PAK_01884 5E7P 5E7P_A 99.7 5.7e-22 9.6e-27 196.1 >5E7P_A Cell division control protein Cdc48; AAA ATPase, M. Smegmatic, RecA; HET: GOL, PGE, PG4, ADP; 2.507A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
PVClopT_16 PAK_2079 PAK_01883 4X8K 4X8K_B 32.3 28 0.00048 28.0 >4X8K_B Sigma A Domain 2, RbpA; Transcription activator, Sigma factor; HET: SO4, EDO; 2.202A {Mycobacterium tuberculosis}
PVClopT_17 PAK_2078 PAK_01882 3WYG 3WYG_D 35.4 23 0.00039 23.6 >3WYG_D Gsp1p, Exportin-1, cAMP-dependent protein kinase; HEAT REPEAT, NUCLEAR EXPORT, GTP-BINDING; HET: GTP; 2.15A {Saccharomyces cerevisiae AWRI796}
PVClopT_18 PAK_2077 PAK_01881 1UKF 1UKF_A 99.8 2e-23 3.5e-28 175.0 >1UKF_A Avirulence protein AVRPPH3; AvrPphB, AvrPph3, Avirulence, Hypersensitive Response; 1.35A {Pseudomonas syringae pv. phaseolicola} SCOP: d.3.1.10
PVClopT_19 PAK_2075 PAK_01880 1T3C 1T3C_B 96.2 0.00014 2.4e-09 81.2 >1T3C_B neurotoxin type E (E.C.3.4.24.69); Clostridium botulinum, catalytic domain, E212Q; 1.9A {Clostridium botulinum} SCOP: d.92.1.7
PVCunit1_1 PAK_2876 PAK_02606 5IV5 5IV5_S 99.5 1.5e-17 2.6e-22 113.9 >5IV5_S Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCunit1_2 PAK_2877 PAK_02607 3J9Q 3J9Q_B 100.0 1.9e-33 3.1e-38 239.1 >3J9Q_B sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit1_3 PAK_2878 PAK_02608 3J9Q 3J9Q_B 100.0 4.1e-34 6.9e-39 250.4 >3J9Q_B sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit1_4 PAK_2879 PAK_02609 3J9Q 3J9Q_B 99.9 3.9e-29 6.5e-34 215.6 >3J9Q_B sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit1_5 PAK_2880 PAK_02610 5IV5 5IV5_B 99.0 1.9e-13 3.1e-18 94.1 >5IV5_BB Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCunit1_6 PAK_2881 PAK_02611 5T87 5T87_H 77.8 1.1 1.9e-05 28.5 >5T87_H CdiI immunity protein, CdiA toxin; Contact-dependent growth inhibition, toxin, antitoxin; HET: MSE; 2.4A {Cupriavidus taiwanensis (strain DSM 17343 / BCRC 17206 / CIP 107171 / LMG 19424 / R1)}
PVCunit1_7 PAK_2882 PAK_02612 5A3C 5A3C_A 68.3 2.8 4.7e-05 34.0 >5A3C_A SIR2 FAMILY PROTEIN (E.C.2.4.2.30); TRANSFERASE, ADP-RIBOSYLTRANSFERASE, METALLOPROTEIN, NAD-DEPENDENT, LIPOYLATION; HET: NAD, GLY; 2.03A {STREPTOCOCCUS PYOGENES}
PVCunit1_8 PAK_2883 PAK_02613 2P5Z 2P5Z_X 99.9 1.5e-31 2.5e-36 240.6 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVCunit1_9 PAK_2884 PAK_02614 2IA7 2IA7_A 99.6 6e-19 1e-23 117.9 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVCunit1_10 PAK_2885 PAK_02615 1JW9 1JW9_B 52.0 8.6 0.00015 26.2 >1JW9_B MOLYBDOPTERIN BIOSYNTHESIS MOEB PROTEIN, MOLYBDOPTERIN; MoeB: modified Rossmann fold ; HET: SO4; 1.7A {Escherichia coli} SCOP: c.111.1.1
PVCunit1_11 PAK_2886 PAK_02616 3H2T 3H2T_A 96.4 6.8e-05 1.1e-09 76.5 >3H2T_A Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVCunit1_12 PAK_2887 PAK_02617 3N7C 3N7C_A 30.3 32 0.00054 29.9 >3N7C_A Crystal structure of the C-terminal; Nuclear pore complex, NUP2, Ran-binding; 2.26A {Ashbya gossypii}
PVCunit1_13 PAK_2888 PAK_02618 2FKK 2FKK_A 97.6 2.6e-07 4.4e-12 82.7 >2FKK_A Baseplate structural protein Gp10; Bacteriophage T4 Baseplate ; HET: EDO; 1.2A {Enterobacteria phage T4}
PVCunit1_14 PAK_2889 PAK_02619 4E2I 4E2I_W 30.8 31.0 0.00052 25.8 >4E2I_W Large T antigen, DNA polymerase; replication initiation, Hydrolase-DNA binding complex; HET: ZN; 5.0A {Simian virus 40}
PVCunit1_15 PAK_2890 PAK_02620 5E7P 5E7P_A 99.8 1.1e-22 1.9e-27 201.2 >5E7P_A Cell division control protein Cdc48; AAA ATPase, M. Smegmatic, RecA; HET: GOL, PGE, PG4, ADP; 2.507A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
PVCunit1_16 PAK_2891 PAK_02621 3GGM 3GGM_A 49.2 10.0 0.00017 23.7 >3GGM_A uncharacterized protein BT9727_2919; Bacillus cereus group., Structural Genomics; 2.0A {Bacillus thuringiensis serovar konkukian}
PVCunit1_17 PAK_2892 PAK_02622 2I88 2I88_A 81.6 0.67 1.1e-05 40.9 >2I88_A Colicin-E1; protein-membrane interactions, toxin-membrane interactions, toxin; 2.5A {Escherichia coli}
PVCunit1_18 PAK_2893 PAK_02623 1T2K 1T2K_A 34.8 24 0.00041 28.4 >1T2K_A Interferon regulatory factor 3/Transcription factor; PROTEIN DNA COMPLEX, transcription, Transcription-DNA; 3.0A {Homo sapiens} SCOP: a.4.5.23
PVCunit1_19 PAK_2894 PAK_02624 2OE1 2OE1_B 67.8 2.9 4.9e-05 27.7 >2OE1_B Thioredoxin-3; electron transport, alpha/beta sandwich, reduced; HET: SO4; 2.1A {Saccharomyces cerevisiae}
PVCunit1_20 PAK_2895 PAK_02625 2FKK 2FKK_A 96.3 9.7e-05 1.6e-09 58.2 >2FKK_A Baseplate structural protein Gp10; Bacteriophage T4 Baseplate ; HET: EDO; 1.2A {Enterobacteria phage T4}
PVCunit1_21 PAK_2896 PAK_02626 2XR4 2XR4_A 100.0 2.2e-35 3.7e-40 236.4 >2XR4_A LECTIN; SUGAR BINDING PROTEIN, LUNG, PATHOGEN; HET: SO4; 1.9A {BURKHOLDERIA CENOCEPACIA}
PVCcif_1 plu2531 PLT_02568 5W5F 5W5F_F 99.5 2.9e-18 4.9e-23 117.5 >5W5F_F Tail tube protein gp19; T4 tail tube, dose limit;{Enterobacteria phage T4 sensu lato}
PVCcif_2 plu2530 PLT_02567 3J9Q 3J9Q_B 99.9 1.6e-31 2.8e-36 227.6 >3J9Q_B sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCcif_3 plu2529 PLT_02566 3J9Q 3J9Q_B 100.0 2.9e-35 4.9e-40 258.0 >3J9Q_B sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCcif_4 plu2528 PLT_02565 3J9Q 3J9Q_B 99.9 1.6e-28 2.7e-33 211.6 >3J9Q_B sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCcif_5 plu2527 PLT_02564 5IV5 5IV5_D 99.0 2.1e-13 3.6e-18 93.8 >5IV5_DE Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCcif_6 plu2526 PLT_02563 1USE 1USE_A 70.0 2.4 4.1e-05 24.3 >1USE_A VASODILATOR-STIMULATED PHOSPHOPROTEIN; SIGNALING PROTEIN,, SIGNALING PROTEIN; 1.3A {HOMO SAPIENS} SCOP: h.1.29.1
PVCcif_7 plu2525 PLT_02562 4G9F 4G9F_D 29.1 35 0.00058 22.6 >4G9F_D HLA class I histocompatibility antigen; TCR, T cell, HLA B*2705; HET: SO4; 1.9A {Homo sapiens}
PVCcif_8 plu2524 PLT_02561 2P5Z 2P5Z_X 99.9 4.5e-29 7.6e-34 224.6 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVCcif_9 plu2523 PLT_02560 2IA7 2IA7_A 99.7 3.5e-21 5.8e-26 127.4 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVCcif_10 plu2522 PLT_02559 5IV5 5IV5_Z 61.0 4.8 8.1e-05 25.8 >5IV5_ZA Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCcif_11 plu2521 PLT_02558 3H2T 3H2T_A 96.3 9.2e-05 1.6e-09 75.6 >3H2T_A Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVCcif_12 plu2520 PLT_02557 4D0N 4D0N_B 71.5 2.1 3.6e-05 39.6 >4D0N_B TRANSFORMING PROTEIN RHOA (E.C.3.6.5.2), A-KINASE; CELL CYCLE, AKAP13, LBC, AKAP-LBC; HET: GDP, SO4; 2.1A {HOMO SAPIENS}
PVCcif_13 plu2519 PLT_02556 2FKK 2FKK_A 96.6 3.7e-05 6.2e-10 67.7 >2FKK_A Baseplate structural protein Gp10; Bacteriophage T4 Baseplate ; HET: EDO; 1.2A {Enterobacteria phage T4}
PVCcif_14 plu2518 PLT_02555 5J4U 5J4U_A 47.3 11 0.00019 31.0 >5J4U_A Glutathione transferase family protein; GST, Complex, GSH, TRANSFERASE; HET: GSH; 1.249A {Populus trichocarpa}
PVCcif_15 plu2517 PLT_02554 5E7P 5E7P_A 99.8 8.4e-23 1.4e-27 202.1 >5E7P_A Cell division control protein Cdc48; AAA ATPase, M. Smegmatic, RecA; HET: GOL, PGE, PG4, ADP; 2.507A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
PVCcif_16 plu2516 PLT_02553 3GGM 3GGM_A 32.5 28 0.00047 22.9 >3GGM_A uncharacterized protein BT9727_2919; Bacillus cereus group., Structural Genomics; 2.0A {Bacillus thuringiensis serovar konkukian}
PVCcif_17 plu2515 PLT_02552 4FBJ 4FBJ_A 100.0 1e-103 2e-108 700.8 >4FBJ_A Hypothetical protein, NEDD8; Effector-Host target complex, Glutamine deamidase; 1.6A {Photorhabdus luminescens subsp. laumondii}
PVCcif_18 plu2514 PLT_02551 1LBU 1LBU_A 36.7 22.0 0.00036 28.1 >1LBU_A MURAMOYL-PENTAPEPTIDE CARBOXYPEPTIDASE; HYDROLASE, NUCLEAR RECEPTOR, CARBOXYPEPTIDASE; 1.8A {Streptomyces albus} SCOP: d.65.1.1, a.20.1.1
PVClopT_1 plu2385 PLT_02424 5IV5 5IV5_D 99.4 3.7e-17 6.3e-22 112.0 >5IV5_DE Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVClopT_2 plu2386 PLT_02425 3J9Q 3J9Q_B 99.9 9.7e-32 1.6e-36 228.6 >3J9Q_B sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVClopT_3 plu2387 PLT_02426 3J9Q 3J9Q_B 99.9 1.5e-32 2.5e-37 238.6 >3J9Q_B sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVClopT_4 plu2388 PLT_02427 3J9Q 3J9Q_B 99.9 8.5e-32 1.4e-36 231.1 >3J9Q_B sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVClopT_5 plu2389 PLT_02428 5IV5 5IV5_I 98.8 3.8e-12 6.5e-17 87.6 >5IV5_IA Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVClopT_6 plu2390 PLT_02429 1RH4 1RH4_A 49.4 10 0.00017 21.7 >1RH4_A RIGHT-HANDED COILED COIL TETRAMER; DE NOVO DESIGN; HET: IPA; 1.9A {synthetic construct} SCOP: k.17.1.1
PVClopT_7 plu2391 PLT_02430 5A3C 5A3C_A 64.3 3.8 6.4e-05 33.2 >5A3C_A SIR2 FAMILY PROTEIN (E.C.2.4.2.30); TRANSFERASE, ADP-RIBOSYLTRANSFERASE, METALLOPROTEIN, NAD-DEPENDENT, LIPOYLATION; HET: NAD, GLY; 2.03A {STREPTOCOCCUS PYOGENES}
PVClopT_8 plu2392 PLT_02431 2P5Z 2P5Z_X 99.9 3.5e-32 6e-37 244.6 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVClopT_9 plu2393 PLT_02432 2IA7 2IA7_A 99.7 1.3e-20 2.2e-25 124.9 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVClopT_10 plu2394 PLT_02433 4JIV 4JIV_D 57.1 6.2 0.00011 25.4 >4JIV_D Tail-associated lysozyme (E.C.3.2.1.17), Putative uncharacterized; PAAR-repeat motif, membrane piercing, type; HET: PLM, STE, ELA; 1.903A {Enterobacteria phage T4}
PVClopT_11 plu2395 PLT_02434 3H2T 3H2T_A 96.9 7.8e-06 1.3e-10 86.4 >3H2T_A Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVClopT_12 plu2396 PLT_02435 2JY7 2JY7_A 64.0 3.9 6.6e-05 34.8 >2JY7_A Ubiquitin-binding protein p62; ubiquitin binding, ubiquitin associated domain; NMR {Homo sapiens} SCOP: a.5.2.1
PVClopT_14 plu2397 PLT_02436 5MDX 5MDX_8 30.5 32.0 0.00053 31.3 >5MDX_8 Photosystem II protein D1 (E.C.1.10.3.9); photosynthesis, photosystem II supercomplex, single; HET: HEM, CLA, PHO, CHL;{Arabidopsis thaliana}
PVClopT_15 plu2398 PLT_02437 5E7P 5E7P_A 99.8 2.8e-23 4.7e-28 205.4 >5E7P_A Cell division control protein Cdc48; AAA ATPase, M. Smegmatic, RecA; HET: GOL, PGE, PG4, ADP; 2.507A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
PVClopT_16 plu2399 PLT_02438 4XHF 4XHF_B 29.6 34.0 0.00057 30.5 >4XHF_B NA(+)-TRANSLOCATING NADH-QUINONE REDUCTASE SUBUNIT C; FMN, OXIDOREDUCTASE, COVALENT FLAVINYLATION; HET: FMN; 1.76A {Shewanella oneidensis}
PVClopT_17 plu2400 PLT_02439 2EBF 2EBF_X 100.0 1.4e-88 2.4e-93 698.1 >2EBF_X Dermonecrotic toxin; Pasteurella multocida toxin, Trojan horse-like; HET: TRE; 1.9A {Pasteurella multocida} SCOP: d.3.1.17, c.150.1.2, a.296.1.1
PVClopT_18 plu2401 PLT_02440 1UKF 1UKF_A 99.8 7e-24 1.2e-28 177.7 >1UKF_A Avirulence protein AVRPPH3; AvrPphB, AvrPph3, Avirulence, Hypersensitive Response; 1.35A {Pseudomonas syringae pv. phaseolicola} SCOP: d.3.1.10
PVCunit1_1 plu1730 PLT_01758 5IV5 5IV5_R 99.4 1.9e-16 3.3e-21 108.5 >5IV5_R Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCunit1_2 plu1729 PLT_01757 3J9Q 3J9Q_B 100.0 2.8e-34 4.8e-39 243.7 >3J9Q_B sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit1_3 plu1728 PLT_01756 3J9Q 3J9Q_B 100.0 1.9e-33 3.2e-38 246.4 >3J9Q_B sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit1_4 plu1727 PLT_01755 3J9Q 3J9Q_B 99.9 7.1e-30 1.2e-34 219.6 >3J9Q_B sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit1_5 plu1726 PLT_01754 5IV5 5IV5_S 99.1 7.7e-14 1.3e-18 96.0 >5IV5_S Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCunit1_6 plu1725 PLT_01753 1USD 1USD_A 46.6 12 0.0002 21.4 >1USD_A VASODILATOR-STIMULATED PHOSPHOPROTEIN; SIGNALING PROTEIN, PHOSPHORYLATION, ACTIN-BINDING, KINASE; 1.7A {HOMO SAPIENS} SCOP: h.1.29.1
PVCunit1_7 plu1724 PLT_01752 5A3C 5A3C_A 43.3 14 0.00024 30.0 >5A3C_A SIR2 FAMILY PROTEIN (E.C.2.4.2.30); TRANSFERASE, ADP-RIBOSYLTRANSFERASE, METALLOPROTEIN, NAD-DEPENDENT, LIPOYLATION; HET: NAD, GLY; 2.03A {STREPTOCOCCUS PYOGENES}
PVCunit1_8 plu1723 PLT_01751 2P5Z 2P5Z_X 99.9 1.2e-30 2e-35 234.8 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVCunit1_9 plu1722 PLT_01750 5IV5 5IV5_I 99.3 3e-15 5.1e-20 106.8 >5IV5_IC Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCunit1_10 plu1721 PLT_01749 1I24 1I24_A 40.8 17 0.00028 27.5 >1I24_A SULFOLIPID BIOSYNTHESIS PROTEIN SQD1, NICOTINAMIDE-ADENINE-DINUCLEOTIDE; SDR, SHORT-CHAIN DEHYDROGENASE/REDUCTASE, ROSSMANN FOLD; HET: NAD, UPG, SO4; 1.2A {Arabidopsis thaliana} SCOP: c.2.1.2
PVCunit1_11 plu1720 PLT_01748 3H2T 3H2T_A 95.3 0.0012 2e-08 67.6 >3H2T_A Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVCunit1_12 plu1719 PLT_01747 2FFM 2FFM_A 56.2 6.6 0.00011 34.4 >2FFM_A SAV1430; alpha-beta protein., Structural Genomics, PSI; 2.51A {Staphylococcus aureus subsp. aureus Mu50} SCOP: d.267.1.1
PVCunit1_13 plu1718 PLT_01746 2FKK 2FKK_A 97.3 1.4e-06 2.4e-11 76.8 >2FKK_A Baseplate structural protein Gp10; Bacteriophage T4 Baseplate ; HET: EDO; 1.2A {Enterobacteria phage T4}
PVCunit1_14 plu1717 PLT_01745 2LXT 2LXT_C 12.6 140.0 0.0023 22.7 >2LXT_C CREB-binding protein (E.C.2.3.1.48), Histone-lysine N-methyltransferase; CREB binding protein, mixed-lineage leukemia; NMR {Homo sapiens}
PVCunit1_15 plu1716 PLT_01744 5E7P 5E7P_A 99.7 1.8e-21 3e-26 192.7 >5E7P_A Cell division control protein Cdc48; AAA ATPase, M. Smegmatic, RecA; HET: GOL, PGE, PG4, ADP; 2.507A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
PVCunit1_16 plu1715 PLT_01743 3GGM 3GGM_A 48.7 11 0.00018 24.9 >3GGM_A uncharacterized protein BT9727_2919; Bacillus cereus group., Structural Genomics; 2.0A {Bacillus thuringiensis serovar konkukian}
PVCunit1_17 plu1714 PLT_01742 1EB6 1EB6_A 83.9 0.46 7.7e-06 31.5 >1EB6_A NEUTRAL PROTEASE II (E.C.3.4.24.39); METALLOPROTEINASE, NEUTRAL PROTEASE II, HYDROLASE; HET: EDO; 1.0A {ASPERGILLUS ORYZAE} SCOP: d.92.1.12
PVCunit1_18 plu1713 PLT_01741 3TMH 3TMH_D 41.0 17.0 0.00028 26.3 >3TMH_D Na(+)/H(+) exchange regulatory cofactor NHE-RF3; alpha helical bundle, PDZ fold; 3.8A {Homo sapiens}
PVCunit1_19 plu1712 PLT_01740 2COL 2COL_A 96.9 1.1e-05 1.8e-10 76.0 >2COL_A Bifunctional hemolysin-adenylate cyclase (E.C.4.6.1.1); LYASE, Calcium binding, LYASE-METAL BINDING; 2.2A {Bordetella pertussis}
PVCunit2_1 plu1708 PLT_01736 5IV5 5IV5_I 99.4 3.7e-17 6.2e-22 112.1 >5IV5_IB Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCunit2_2 plu1707 PLT_01735 3J9Q 3J9Q_B 99.9 1e-32 1.7e-37 234.5 >3J9Q_B sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit2_3 plu1706 PLT_01734 3J9Q 3J9Q_B 100.0 1.3e-33 2.1e-38 249.3 >3J9Q_B sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit2_4 plu1705 PLT_01733 3J9Q 3J9Q_B 99.9 3.2e-29 5.4e-34 216.1 >3J9Q_B sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit2_5 plu1704 PLT_01732 5IV5 5IV5_R 98.9 1.1e-12 1.9e-17 90.3 >5IV5_R Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCunit2_6 plu1703 PLT_01731 4E71 4E71_A 46.2 12 0.00021 23.4 >4E71_A Plexin-B2; plexin, transmembrane, signaling, rbd, Structural; 2.26A {Homo sapiens}
PVCunit2_7 plu1702 PLT_01730 5A3C 5A3C_A 66.3 3.3 5.5e-05 33.6 >5A3C_A SIR2 FAMILY PROTEIN (E.C.2.4.2.30); TRANSFERASE, ADP-RIBOSYLTRANSFERASE, METALLOPROTEIN, NAD-DEPENDENT, LIPOYLATION; HET: NAD, GLY; 2.03A {STREPTOCOCCUS PYOGENES}
PVCunit2_8 plu1701 PLT_01729 2P5Z 2P5Z_X 99.9 4.9e-31 8.3e-36 237.2 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVCunit2_9 plu1700 PLT_01728 2IA7 2IA7_A 99.6 3.6e-19 6.1e-24 120.5 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVCunit2_10 plu1699 PLT_01727 2SOB 2SOB_A 40.6 17 0.00029 22.4 >2SOB_A STAPHYLOCOCCAL NUCLEASE; HYDROLASE (PHOSPHORIC DIESTER); NMR {Staphylococcus aureus} SCOP: b.40.1.1
PVCunit2_11 plu1698 PLT_01726 3H2T 3H2T_A 96.2 0.00014 2.3e-09 74.3 >3H2T_A Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVCunit2_12 plu1697 PLT_01725 2RIL 2RIL_A 24.5 48.0 0.00081 25.2 >2RIL_A Antibiotic biosynthesis monooxygenase; YP_001095275.1, Putative monooxygenase, Antibiotic biosynthesis; 1.26A {Shewanella loihica}
PVCunit2_13 plu1696 PLT_01724 1V1H 1V1H_A 95.2 0.0016 2.7e-08 52.2 >1V1H_A FIBRITIN, FIBER PROTEIN; ADENOVIRUS, CHIMERA, FIBER PROTEIN; 1.9A {HUMAN ADENOVIRUS TYPE 2, BACTERIOPHAGE T4} SCOP: b.83.1.1, h.1.17.1
PVCunit2_14 plu1695 PLT_01723 3K9K 3K9K_A 99.7 2.8e-22 4.7e-27 146.1 >3K9K_A Histone-lysine N-methyltransferase SETMAR (E.C.2.1.1.43); transposase, Chromatin regulator, DNA damage; 2.55A {Homo sapiens}
PVCunit2_99 plu1694 PLT_01722 1GYZ 1GYZ_A 18.2 78.0 0.0013 24.4 >1GYZ_A 50S RIBOSOMAL PROTEIN L20; RIBOSOMAL PROTEIN, RIBOSOME, PROTEIN SYNTHESIS; NMR {AQUIFEX AEOLICUS} SCOP: a.144.2.1
PVCunit2_15 plu1693 PLT_01721 5GJR 5GJR_M 99.7 2.3e-21 3.8e-26 188.0 >5GJR_M 26S protease regulatory subunit 4; protein complex, human proteasome, HYDROLASE; HET: ADP; 3.5A {Homo sapiens}
PVCunit2_16 plu1692 PLT_01720 3GGM 3GGM_A 76.6 1.3 2.1e-05 29.3 >3GGM_A uncharacterized protein BT9727_2919; Bacillus cereus group., Structural Genomics; 2.0A {Bacillus thuringiensis serovar konkukian}
PVCunit2_17 plu1691 PLT_01719 2GUT 2GUT_A 48.5 11 0.00018 28.7 >2GUT_A Positive cofactor 2 glutamine/Q-rich-associated protein; KIX, 3 HELICAL BUNDLE, TRANSCRIPTION; NMR {Homo sapiens}
PVCunit2_18 plu1690 PLT_01718 3ONQ 3ONQ_B 55.9 6.7 0.00011 22.6 >3ONQ_B Regulator of polyketide synthase expression; Structural Genomics, PSI-2, Protein Structure; HET: SO4, GOL; 2.098A {Bifidobacterium adolescentis}
PVCunit2_19 plu1689 PLT_01717 5MBV 5MBV_A 36.3 22.0 0.00037 30.0 >5MBV_A RecBCD enzyme subunit RecB (E.C.3.1.11.5); Inhibitor, Complex, DNA repair, Helicase/Nuclease;{Escherichia coli}
PVCunit3_1 plu1689 PLT_01716 5IV5 5IV5_R 99.4 3.1e-16 5.2e-21 107.5 >5IV5_R Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCunit3_2 plu1688 PLT_01715 3J9Q 3J9Q_B 100.0 1.9e-33 3.2e-38 239.2 >3J9Q_B sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit3_3 plu1687 PLT_01714 3J9Q 3J9Q_B 100.0 2.1e-33 3.6e-38 245.9 >3J9Q_B sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit3_4 plu1686 PLT_01713 3J9Q 3J9Q_B 99.9 1.1e-29 1.8e-34 218.4 >3J9Q_B sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit3_5 plu1685 PLT_01712 5IV5 5IV5_D 98.8 3.1e-12 5.3e-17 88.0 >5IV5_DE Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCunit3_6 plu1684 PLT_01711 2E3P 2E3P_B 77.2 1.2 2e-05 26.9 >2E3P_B Lipid-transfer protein CERT; LIPID TRANSFER PROTEIN, CERT, CERAMIDE; HET: 16C; 1.4A {Homo sapiens}
PVCunit3_7 plu1683 PLT_01710 1FLT 1FLT_Y 32.8 27 0.00046 23.6 >1FLT_Y VASCULAR ENDOTHELIAL GROWTH FACTOR, FMS-LIKE; COMPLEX (GROWTH FACTOR-TRANSFERASE), FLT-1 RECEPTOR; 1.7A {Homo sapiens} SCOP: b.1.1.4
PVCunit3_8 plu1682 PLT_01709 2P5Z 2P5Z_X 99.9 8.1e-32 1.4e-36 242.2 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVCunit3_9 plu1681 PLT_01708 2IA7 2IA7_A 99.5 1.4e-18 2.3e-23 116.2 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVCunit3_10 plu1680 PLT_01707 4IX9 4IX9_C 39.7 18 0.0003 24.8 >4IX9_C V-type proton ATPase subunit F; V-ATPase, stalk subunit, subunit F; HET: GOL, TRS; 2.33A {Saccharomyces cerevisiae}
PVCunit3_11 plu1679 PLT_01706 3H2T 3H2T_A 95.8 0.00042 7e-09 70.9 >3H2T_A Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVCunit3_12 plu1678 PLT_01705 3QZC 3QZC_B 26.5 41 0.0007 28.2 >3QZC_B Periplasmic protein CpxP; alpha-helical hairpin, LTXXQ motif, stress; 2.85A {Escherichia coli}
PVCunit3_13 plu1677 PLT_01704 2FKK 2FKK_A 96.7 2.6e-05 4.4e-10 67.0 >2FKK_A Baseplate structural protein Gp10; Bacteriophage T4 Baseplate ; HET: EDO; 1.2A {Enterobacteria phage T4}
PVCunit3_14 plu1676 PLT_01703 5US5 5US5_A 18.3 78.0 0.0013 27.8 >5US5_A UPF0297 protein EF_1202; IreB, dimer, Structural Genomics, PSI-2; NMR {Enterococcus faecalis (strain ATCC 700802 / V583)}
PVCunit3_15 plu1675 PLT_01702 5E7P 5E7P_A 99.8 1e-22 1.7e-27 201.5 >5E7P_A Cell division control protein Cdc48; AAA ATPase, M. Smegmatic, RecA; HET: GOL, PGE, PG4, ADP; 2.507A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
PVCunit3_16 plu1674 PLT_01701 2OPA 2OPA_A 49.4 10 0.00017 22.5 >2OPA_A Probable tautomerase ywhB (E.C.5.3.2.-); homohexamer, 4-Oxalocrotonate Tautomerase, inhibitor, 2-Fluoro-p-Hydroxycinnamate; HET: FHC; 2.4A {Bacillus subtilis}
PVCunit3_17 plu1673 PLT_01700 5XXB 5XXB_e 50.5 9.4 0.00016 26.4 >5XXB_e uL2, uL3, uL4, uL18, eL6; parasitic ribosome, rRNA, rproteins, RIBOSOME; 3.17A {Toxoplasma gondii}
PVCunit3_18 plu1672 PLT_01699 4Q2G 4Q2G_B 27.6 38.0 0.00065 30.4 >4Q2G_B Phosphatidate cytidylyltransferase (E.C.2.7.7.41); intramembrane enzyme, CdsA fold, phospholipid; HET: BNG; 3.4A {Thermotoga maritima MSB8}
PVCunit3_19 plu1671 PLT_01698 2W8M 2W8M_B 24.2 49 0.00082 31.1 >2W8M_B ORF D212; SSV1, CRENARCHAEAL VIRUS, HYDROLASE; 2.4A {SULFOLOBUS VIRUS RAGGED HILLS}
PVCunit4_1 plu1667 PLT_01696 5IV5 5IV5_D 99.4 2.9e-17 5e-22 112.6 >5IV5_DE Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCunit4_2 plu1666 PLT_01695 3J9Q 3J9Q_B 99.9 4e-33 6.8e-38 237.2 >3J9Q_B sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit4_3 plu1665 PLT_01694 3J9Q 3J9Q_B 100.0 1.6e-34 2.7e-39 254.0 >3J9Q_B sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit4_4 plu1664 PLT_01693 3J9Q 3J9Q_B 99.9 2.1e-29 3.5e-34 217.9 >3J9Q_B sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit4_5 plu1663 PLT_01692 5IV5 5IV5_D 98.9 5.9e-13 9.9e-18 91.6 >5IV5_DE Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCunit4_6 plu1662 PLT_01691 1CZ0 1CZ0_A 61.8 4.6 7.7e-05 26.8 >1CZ0_A INTRON-ENCODED HOMING ENDONUCLEASE I-PPOI (E.C.3.1.-.-)/DNA; PROTEIN-DNA COMPLEX, DISTORTED DNA, HIS-CYS; 2.1A {Physarum polycephalum} SCOP: d.4.1.3
PVCunit4_7 plu1661 PLT_01690 5A3A 5A3A_A 63.6 4 6.8e-05 33.1 >5A3A_A SIR2 FAMILY PROTEIN (E.C.2.4.2.30); TRANSFERASE, P-RIBOSYLTRANSFERASE, METALLOPROTEIN, NAD-DEPENDENT, LIPOYLATION; HET: EDO, GLY; 1.54A {STREPTOCOCCUS PYOGENES}
PVCunit4_8 plu1660 PLT_01689 2P5Z 2P5Z_X 99.9 1.4e-32 2.4e-37 247.1 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVCunit4_9 plu1659 PLT_01688 2IA7 2IA7_A 99.6 4.9e-19 8.2e-24 119.9 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVCunit4_10 plu1658 PLT_01687 5C2Y 5C2Y_B 32.0 29 0.00049 26.9 >5C2Y_B RNA polymerase II subunit B1; regulator of transcription, zinc finger; HET: SO4; 2.6A {Saccharomyces cerevisiae}
PVCunit4_11 plu1657 PLT_01686 3H2T 3H2T_A 96.0 0.00027 4.6e-09 72.2 >3H2T_A Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVCunit4_12 plu1656 PLT_01685 4H3K 4H3K_E 28.9 35.0 0.00059 36.0 >4H3K_E Symplekin, RNA polymerase II subunit; Heat repeat, phosphatase, RNA polymerase; 2.0A {Homo sapiens}
PVCunit4_13 plu1655 PLT_01684 2FKK 2FKK_A 97.1 2.9e-06 4.9e-11 74.3 >2FKK_A Baseplate structural protein Gp10; Bacteriophage T4 Baseplate ; HET: EDO; 1.2A {Enterobacteria phage T4}
PVCunit4_14 plu1654 PLT_01683 2BPT 2BPT_B 15.6 99.0 0.0017 24.5 >2BPT_B IMPORTIN BETA-1 SUBUNIT, NUCLEOPORIN NUP1; NUCLEAR TRANSPORT, NUCLEOCYTOPLASMIC TRANSPORT, NUCLEAR; 1.99A {SACCHAROMYCES CEREVISIAE}
PVCunit4_15 plu1653 PLT_01682 5E7P 5E7P_A 99.7 8.6e-22 1.5e-26 195.1 >5E7P_A Cell division control protein Cdc48; AAA ATPase, M. Smegmatic, RecA; HET: GOL, PGE, PG4, ADP; 2.507A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
PVCunit4_16 plu1652 PLT_01681 3FM2 3FM2_A 41.1 17 0.00028 28.0 >3FM2_A Uncharacterized protein, distantly related to; STRUCTURAL GENOMICS, JOINT CENTER FOR; HET: ACT; 1.8A {Anabaena variabilis ATCC 29413}
PVCunit4_17 plu1651 PLT_01680 2I88 2I88_A 56.2 6.6 0.00011 35.4 >2I88_A Colicin-E1; protein-membrane interactions, toxin-membrane interactions, toxin; 2.5A {Escherichia coli}
PVCpnf_1 PAU_03353 PAU_03392 3eaa 3eaa_A 61.6 1.9 7.8e-05 28.8 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVCpnf_2 PAU_03352 PAU_03391 3j9q 3j9q_A 100.0 3.1e-34 1.2e-38 241.3 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCpnf_3 PAU_03351 PAU_03390 3j9q 3j9q_A 99.9 3.6e-33 1.4e-37 240.8 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCpnf_4 PAU_03350 PAU_03389 3j9q 3j9q_A 99.9 9.7e-28 3.8e-32 205.2 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCpnf_5 PAU_03349 PAU_03388 3eaa 3eaa_A 91.8 0.018 7.3e-07 39.1 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVCpnf_6 PAU_03348 PAU_03387 2w4o 2w4o_A 57.7 2.5 0.0001 26.1 >2w4o_A Calcium/calmodulin-dependent protein kinase type; calmodulin-binding, nucleotide-binding, serine/threonine-Pro kinase, ATP-binding, phosphoprotein; HET: DKI; 2.17A {Homo sapiens} No DOI found.
PVCpnf_7 PAU_03347 PAU_03386 2v6x 2v6x_B 36.8 9.1 0.00036 26.4 >2v6x_B DOA4-independent degradation protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae} 10.1038/nature06171
PVCpnf_8 PAU_03346 PAU_03385 2p5z 2p5z_X 99.9 1.2e-26 4.7e-31 210.2 >2p5z_X Type VI secretion system component; structural genomics, unknown function, PSI-2, protein struct initiative; 2.60A {Escherichia coli O6} SCOP: b.40.8.1 b.106.1.1 b.106.1.1 10.1073/pnas.0813360106
PVCpnf_9 PAU_03345 PAU_03384 2ia7 2ia7_A 99.7 1.7e-22 6.6e-27 132.7 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCpnf_10 PAU_03344 PAU_03383 1ukf 1ukf_A 74.5 0.67 2.7e-05 34.7 >1ukf_A Avirulence protein AVRPPH3; AVRPPHB, hypersensitive response, hydrolase; 1.35A {Pseudomonas syringae PV} SCOP: d.3.1.10 10.1073/pnas.2036536100
PVCpnf_11 PAU_03343 PAU_03382 3h2t 3h2t_A 96.8 7.6e-06 3e-10 79.8 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCpnf_12 PAU_03342 PAU_03381 1w5d 1w5d_A 33.8 11 0.00043 36.9 >1w5d_A Penicillin-binding protein; D-Ala-D-Ala-carboxypeptidase, peptidoglycan, beta-lactam, hydrolase, peptidoglycan synthesis; 2.1A {Bacillus subtilis} SCOP: e.3.1.3 PDB: 2j9p_A* 10.1016/j.jmb.2007.05.071
PVCpnf_13 PAU_03341 PAU_03380 3izo 3izo_F 98.2 1.2e-09 4.6e-14 109.0 >3izo_F Fiber; pentameric penton base, trimeri viral protein; 3.60A {Human adenovirus 5} 10.1016/j.jmb.2010.11.043
PVCpnf_14 PAU_03340 PAU_03379 3c9p 3c9p_A 31.6 12 0.0005 32.1 >3c9p_A Uncharacterized protein SP1917; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 1.96A {Streptococcus pneumoniae} No DOI found.
PVCpnf_15 PAU_03339 PAU_03378 3cf2 3cf2_A 99.8 1.1e-25 4.4e-30 222.4 >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* 10.1016/j.str.2008.02.010
PVCpnf_16 PAU_03338 PAU_03377 2fq3 2fq3_A 20.2 28 0.0011 24.8 >2fq3_A Transcription regulatory protein SWI3; four-helix bundle; 1.40A {Saccharomyces cerevisiae} SCOP: a.4.1.18 10.1073/pnas.0510949103
PVCpnf_17 PAU_03337 PAU_03376 1yrt 1yrt_A 98.4 1e-10 4.2e-15 107.0 >1yrt_A Bifunctional hemolysin-adenylate cyclase; CYAA, layse, toxin; 2.10A {Bordetella pertussis} PDB: 1yru_A 1zot_A* 2col_A 10.1038/sj.emboj.7600800
PVCpnf_18 PAU_03336 PAU_03375 2qzc 2qzc_A 50.3 4.0 0.00016 22.8 >2qzc_A Transcriptional activator TENA-1; heme oxygenase-like fold, structural genomics, joint center structural genomics, JCSG; 1.50A {Sulfolobus solfataricus P2} No DOI found.
PVCpnf_19 PAU_03334 PAU_03374 3gqe 3gqe_A 61.6 1.9 7.8e-05 25.6 >3gqe_A Non-structural protein 3; macro domain, X domain, venezuelan equine encephalitis virus alphavirus; HET: BCN; 2.30A {Venezuelan equine encephalitis virus} PDB: 3gqo_A* 10.1128/JVI.00189-09
PVCpnf_20 PAU_03333 PAU_03373 3szp 3szp_A 99.7 1.6e-21 6.4e-26 124.8 >3szp_A Transcriptional regulator, LYSR family; winged helix-turn helix, DNA-binding, transcription factor; 2.20A {Vibrio cholerae} PDB: 3t1b_B 10.1111/j.1365-2958.2011.07919.x
PVCpnf_21 PAU_03332 PAU_03372 1hq0 1hq0_A 100.0 7.1e-65 2.8e-69 458.4 >1hq0_A CNF1, cytotoxic necrotizing factor 1; beta sandwich, RHO deamidase, RHO transglutaminase, toxin; 1.83A {Escherichia coli} SCOP: d.194.1.1 PDB: 1hzg_A 10.1038/89610
PVCpnf_22 PAU_03331 PAU_03371 2oyz 2oyz_A 61.4 2.0 7.9e-05 24.6 >2oyz_A UPF0345 protein VPA0057; unknown function, structural genomi 2, protein structure initiative, midwest center for structu genomics, MCSG; 1.71A {Vibrio parahaemolyticus} SCOP: b.82.1.22 No DOI found.
PVCpnf_23 PAU_03330 PAU_03370 3hdf 3hdf_A 100.0 8.3e-42 3.3e-46 227.1 >3hdf_A Lysozyme; antimicrobial, bacteriolytic enzyme, glycosid hydrolase, late protein; 1.70A {Enterobacteria phage P21} 10.1038/nsmb.1681
PVCpnf_24 PAU_03329 PAU_03369 3vp9 3vp9_A 54.3 3.2 0.00013 29.4 >3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A 10.1074/jbc.M112.369652
PVCcif_1 PAU_01993 PAU_01961 1tvs 1tvs_A 33.1 11 0.00045 25.9 >1tvs_A Transactivator protein; transcription regulation; NMR {Equine infectious anemia virus} SCOP: j.40.1.1 PDB: 1tvt_A 10.1111/j.1432-1033.1994.0855b.x
PVCcif_2 PAU_01994 PAU_01962 3j9q 3j9q_A 99.9 5.2e-33 2.1e-37 234.6 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCcif_3 PAU_01995 PAU_01963 3j9q 3j9q_A 99.9 1e-30 4e-35 228.5 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCcif_4 PAU_01996 PAU_01964 3j9q 3j9q_A 99.9 9.1e-28 3.6e-32 204.7 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCcif_5 PAU_01997 PAU_01965 3eaa 3eaa_A 52.9 3.4 0.00014 27.6 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVCcif_6 PAU_01998 PAU_01966 2o6n 2o6n_A 48.1 4.6 0.00018 21.6 >2o6n_A RH4B designed peptide; right-handed, tetramer, de novo protein; HET: CGU; 1.10A {Synthetic} SCOP: k.17.1.1 PDB: 1tgg_A* 10.1110/ps.062702907
PVCcif_7 PAU_01999 PAU_01967 1ajk 1ajk_A 33.0 11 0.00046 26.9 >1ajk_A CPA16M-84, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase; glucanase, circular permutation; HET: EPE; 1.80A {Paenibacillus macerans} SCOP: b.29.1.2 10.1002/(SICI)1097-0134(19980201)30:2<155::AID-PROT5>3.0.CO;2-M
PVCcif_8 PAU_02000 PAU_01968 2p5z 2p5z_X 99.9 9.4e-27 3.8e-31 210.6 >2p5z_X Type VI secretion system component; structural genomics, unknown function, PSI-2, protein struct initiative; 2.60A {Escherichia coli O6} SCOP: b.40.8.1 b.106.1.1 b.106.1.1 10.1073/pnas.0813360106
PVCcif_9 PAU_02001 PAU_01969 2ia7 2ia7_A 99.7 1.4e-22 5.5e-27 133.9 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCcif_10 PAU_02002 PAU_01970 3kkq 3kkq_A 34.5 10 0.00042 23.2 >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* 10.1074/jbc.M110.125161
PVCcif_11 PAU_02003 PAU_01971 3h2t 3h2t_A 94.6 0.0016 6.5e-08 64.8 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCcif_12 PAU_02004 PAU_01972 1pqx 1pqx_A 42.5 6.4 0.00026 32.2 >1pqx_A Conserved hypothetical protein; ZR18,structure, autostructure,spins,autoassign, northeast structural genomics consortium; NMR {Staphylococcus aureus subsp} SCOP: d.267.1.1 PDB: 2ffm_A 2m6q_A 2m8w_A No DOI found.
PVCcif_13 PAU_02005 PAU_01973 1ocy 1ocy_A 98.3 4.7e-10 1.9e-14 88.9 >1ocy_A Bacteriophage T4 short tail fibre; structural protein, fibrous protein, LIPO-polysaccharide binding, bacteriophage structural protein; HET: CIT; 1.5A {Bacteriophage T4} SCOP: d.231.1.1 10.1016/S0022-2836(03)00755-1
PVCcif_14 PAU_02006 PAU_01974 2jtg 2jtg_A 50.5 4.0 0.00016 29.2 >2jtg_A THAP domain-containing protein 1; zinc finger, CCCH, DNA-binding, metal-binding, zinc- finger, metal binding protein; NMR {Homo sapiens} PDB: 2ko0_A 2l1g_A* 10.1074/jbc.M707537200
PVCcif_15 PAU_02007 PAU_01975 3cf2 3cf2_A 99.8 7e-25 2.8e-29 216.4 >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* 10.1016/j.str.2008.02.010
PVCcif_16 PAU_02008 PAU_01976 1yg0 1yg0_A 32.0 12 0.00049 20.6 >1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori} No DOI found.
PVCcif_17 PAU_02009 PAU_01977 3eir 3eir_A 100.0 9.4e-90 3.7e-94 611.6 >3eir_A Putative ATP/GTP binding protein; papain-like fold, unknown function; 2.10A {Burkholderia pseudomallei} PDB: 3eit_A 3gqm_A 4hcp_A 4hcn_A 10.1073/pnas.0900212106
PVCcif_18 PAU_02010 PAU_01978 2b9i 2b9i_C 28.4 15 0.00061 22.2 >2b9i_C MSG5, tyrosine-protein phosphatase MSG5; transferase; HET: ADP; 2.50A {Saccharomyces cerevisiae} 10.1016/j.molcel.2005.10.030
PVCcif_19 PAU_02011 PAU_01979 3mw6 3mw6_A 62.0 1.9 7.6e-05 34.3 >3mw6_A Uncharacterized protein NMB1681; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.21A {Neisseria meningitidis} No DOI found.
PVCcif_20 PAU_02012 PAU_01980 1xzo 1xzo_A 36.2 9.4 0.00038 23.2 >1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A 10.1021/bi0480537
PVClumt_0 PAU_02249
PVClumt_1 PAU_02247 PAU_02206 3lm5 3lm5_A 56.6 2.7 0.00011 29.4 >3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* Key error. ID likely deprecated.
PVClumt_2 PAU_02246 PAU_02205 3j9q 3j9q_A 99.9 4.6e-30 1.8e-34 222.4 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClumt_4 PAU_02245 PAU_02204 3j9q 3j9q_A 99.8 1.4e-25 5.4e-30 190.7 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClumt_5 PAU_02244 PAU_02203 3eaa 3eaa_A 48.0 4.7 0.00019 27.0 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVClumt_6 PAU_02243 PAU_02202 1use 1use_A 67.8 1.2 4.9e-05 23.9 >1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A 10.1073/pnas.0403069101
PVClumt_7 PAU_02242 PAU_02201 2cvi 2cvi_A 24.3 20 0.00081 21.6 >2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A No DOI found.
PVClumt_8 PAU_02241 PAU_02200 2p5z 2p5z_X 99.7 3.9e-22 1.6e-26 179.7 >2p5z_X Type VI secretion system component; structural genomics, unknown function, PSI-2, protein struct initiative; 2.60A {Escherichia coli O6} SCOP: b.40.8.1 b.106.1.1 b.106.1.1 10.1073/pnas.0813360106
PVClumt_9 PAU_02240 PAU_02199 2ia7 2ia7_A 99.7 4e-21 1.6e-25 127.0 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVClumt_10 afp10 PAU_02198 1b0a 1b0a_A 57.7 2.5 0.0001 30.1 >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 10.1110/ps.8.6.1342
PVClumt_11 afp11 PAU_02197 3h2t 3h2t_A 95.9 0.00015 6e-09 69.3 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVClumt_12 PAU_02237 PAU_02196 1yo5 1yo5_C 43.8 6 0.00024 32.8 >1yo5_C SAM pointed domain containing ETS transcription factor; protein-DNA complex, double helix, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.4.5.21 10.1021/bi047352t
PVClumt_13 PAU_02236 PAU_02195 1v1h 1v1h_A 97.7 6.4e-08 2.5e-12 71.3 >1v1h_A Fibritin, fiber protein; chimera; 1.9A {Human adenovirus type 2} SCOP: b.83.1.1 h.1.17.1 PDB: 1v1i_A 10.1016/j.jmb.2004.07.008
PVClumt_97 PAU_02235 PAU_02194 1osn 1osn_A 45.7 5.3 0.00021 36.9 >1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1 10.1074/jbc.M302025200
PVClumt_98 PAU_02234 PAU_02193 1pby 1pby_A 41.0 7.1 0.00028 34.8 >1pby_A Quinohemoprotein amine dehydrogenase 60 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: a.3.1.7 a.3.1.7 b.1.18.14 b.1.18.14 b.61.4.1 PDB: 1jju_A* 10.1107/S090744490301429X
PVClumt_99 PAU_02233 PAU_02192 1tdp 1tdp_A 20.6 27.0 0.0011 26.9 >1tdp_A Carnobacteriocin B2 immunity protein; four-helix bundle, antimicrobial protein; NMR {Carnobacterium maltaromaticum} SCOP: a.29.8.1 10.1021/bi048854+
PVClumt_15 PAU_02232 PAU_02191 3cf2 3cf2_A 99.8 6.8e-26 2.7e-30 224.1 >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* 10.1016/j.str.2008.02.010
PVClumt_16 PAU_02231 PAU_02190 3lfh 3lfh_A 44.5 5.7 0.00023 29.6 >3lfh_A Manxa, phosphotransferase system, mannose/fructose-speci component IIA; PTS; 1.80A {Thermoanaerobacter tengcongensis} No DOI found.
PVClumt_17 PAU_02230 PAU_02189 2vk9 2vk9_A 96.7 9e-06 3.6e-10 94.0 >2vk9_A Alpha-toxin; glycosyltransferase; 2.85A {Clostridium novyi} SCOP: c.68.1.22 10.1016/j.jmb.2007.12.065
PVClopT_1 PAU_02112 PAU_02074 3eaa 3eaa_A 79.8 0.37 1.5e-05 32.3 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVClopT_2 PAU_02111 PAU_02073 3j9q 3j9q_A 100.0 2.9e-35 1.2e-39 247.0 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClopT_4 PAU_02110 PAU_02072 3j9q 3j9q_A 99.9 5.4e-31 2.2e-35 224.1 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClopT_5 PAU_02109 PAU_02071 3eaa 3eaa_A 66.6 1.4 5.4e-05 29.7 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVClopT_6 PAU_02108 PAU_02070 3lua 3lua_A 51.2 3.8 0.00015 20.0 >3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum} No DOI found.
PVClopT_7 PAU_02107 PAU_02069 3gsn 3gsn_A 22.8 23 0.00091 22.3 >3gsn_A RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human cytomegalovirus, PP65, T cell receptor (TCR), immune response, public response; 2.80A {Homo sapiens} PDB: 5d2l_I 10.4049/jimmunol.0900556
PVClopT_8 PAU_02106 PAU_02068 2p5z 2p5z_X 99.9 7.4e-29 2.9e-33 224.3 >2p5z_X Type VI secretion system component; structural genomics, unknown function, PSI-2, protein struct initiative; 2.60A {Escherichia coli O6} SCOP: b.40.8.1 b.106.1.1 b.106.1.1 10.1073/pnas.0813360106
PVClopT_9 PAU_02105 PAU_02067 2ia7 2ia7_A 99.8 3.5e-24 1.4e-28 140.7 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVClopT_10 PAU_02104 PAU_02066 3ojo 3ojo_A 32.5 12 0.00047 28.1 >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* 10.1074/jbc.M110.216002
PVClopT_11 PAU_02103 PAU_02065 3h2t 3h2t_A 95.3 0.00057 2.3e-08 70.6 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVClopT_12 PAU_02102 PAU_02064 1pqx 1pqx_A 37.3 8.8 0.00035 31.5 >1pqx_A Conserved hypothetical protein; ZR18,structure, autostructure,spins,autoassign, northeast structural genomics consortium; NMR {Staphylococcus aureus subsp} SCOP: d.267.1.1 PDB: 2ffm_A 2m6q_A 2m8w_A No DOI found.
PVClopT_14 PAU_02101 PAU_02063 2elv 2elv_A 27.2 17 0.00067 15.4 >2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rux_A No DOI found.
PVClopT_15 PAU_02100 PAU_02062 3cf2 3cf2_A 99.8 2.8e-24 1.1e-28 212.0 >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* 10.1016/j.str.2008.02.010
PVClopT_16 PAU_02099 PAU_02061 3ggm 3ggm_A 19.6 29.0 0.0012 21.4 >3ggm_A Uncharacterized protein BT9727_2919; bacillus cereus group., structural genomics, PSI-2, protein structure initiative; 2.00A {Bacillus thuringiensis serovarkonkukian} No DOI found.
PVClopT_17 PAU_02098 PAU_02060 2ebf 2ebf_X 100.0 4.3e-86 1.7e-90 677.7 >2ebf_X Dermonecrotic toxin; pasteurella multocida toxin, trojan horse-like fold; HET: TRE; 1.90A {Pasteurella multocida} SCOP: a.296.1.1 c.150.1.2 d.3.1.17 PDB: 2ec5_A 2ebh_X* 10.1073/pnas.0608197104
PVClopT_18 PAU_02097 PAU_02059 2jsp 2jsp_A 17.0 37 0.0015 25.1 >2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens} 10.1073/pnas.0706659104
PVClopT_19 PAU_02096 PAU_02058 1ukf 1ukf_A 99.9 2.2e-27 8.8e-32 200.1 >1ukf_A Avirulence protein AVRPPH3; AVRPPHB, hypersensitive response, hydrolase; 1.35A {Pseudomonas syringae PV} SCOP: d.3.1.10 10.1073/pnas.2036536100
PVClopT_20 PAU_02095 PAU_02057 1g12 1g12_A 93.1 0.0081 3.2e-07 49.9 >1g12_A Peptidyl-Lys metalloendopeptidase; zinc cordinate,metalloprotease, hydrolase; HET: MAN; 1.60A {Grifola frondosa} SCOP: d.92.1.12 PDB: 1ge5_A* 1ge6_A* 1ge7_A* 10.1107/S0907444900019740
PVCunit1_1 afp1 PAU_02775 3eaa 3eaa_A 67.6 1.2 5e-05 29.8 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVCunit1_2 afp2 PAU_02776 3j9q 3j9q_A 100.0 3e-36 1.2e-40 253.9 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit1_3 afp3 PAU_02777 3j9q 3j9q_A 100.0 7.3e-35 2.9e-39 253.3 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit1_4 afp4 PAU_02778 3j9q 3j9q_A 99.9 2.8e-29 1.1e-33 214.1 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit1_5 afp5 PAU_02779 3eaa 3eaa_A 50.5 4.0 0.00016 27.3 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVCunit1_6 afp7 PAU_02780 3ju0 3ju0_A 44.9 5.6 0.00022 22.0 >3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum} 10.1074/jbc.M109.059261
PVCunit1_7 afp7 PAU_02781 1avo 1avo_B 31.4 13 0.0005 27.0 >1avo_B 11S regulator; proteasome activator, cell adhesion, interferon induction; 2.80A {Homo sapiens} SCOP: a.24.8.1 10.1038/37670
PVCunit1_8 PAU_02796 PAU_02782 2p5z 2p5z_X 99.9 2.9e-30 1.2e-34 233.5 >2p5z_X Type VI secretion system component; structural genomics, unknown function, PSI-2, protein struct initiative; 2.60A {Escherichia coli O6} SCOP: b.40.8.1 b.106.1.1 b.106.1.1 10.1073/pnas.0813360106
PVCunit1_9 afp9 PAU_02783 2ia7 2ia7_A 99.7 6.3e-22 2.5e-26 130.9 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCunit1_10 afp10 PAU_02784 1pml 1pml_A 36.7 9.1 0.00036 21.3 >1pml_A Tissue plasminogen activator kringle 2; hydrolase(serine protease); 2.38A {Homo sapiens} SCOP: g.14.1.1 PDB: 1pk2_A* 1tpk_A 10.1002/pro.5560030605
PVCunit1_11 afp11 PAU_02785 3h2t 3h2t_A 95.3 0.00061 2.4e-08 67.8 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCunit1_12 afp12 PAU_02786 1pqx 1pqx_A 18.9 31 0.0012 28.5 >1pqx_A Conserved hypothetical protein; ZR18,structure, autostructure,spins,autoassign, northeast structural genomics consortium; NMR {Staphylococcus aureus subsp} SCOP: d.267.1.1 PDB: 2ffm_A 2m6q_A 2m8w_A No DOI found.
PVCunit1_13 PAU_02801 PAU_02787 1ocy 1ocy_A 98.1 1.9e-09 7.4e-14 89.2 >1ocy_A Bacteriophage T4 short tail fibre; structural protein, fibrous protein, LIPO-polysaccharide binding, bacteriophage structural protein; HET: CIT; 1.5A {Bacteriophage T4} SCOP: d.231.1.1 10.1016/S0022-2836(03)00755-1
PVCunit1_14 orf25 PAU_02788 2dgb 2dgb_A 27.4 17 0.00066 27.2 >2dgb_A Hypothetical protein PURS; purine, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Thermus thermophilus} PDB: 2cuw_A No DOI found.
PVCunit1_15 PAU_02803 PAU_02789 3cf2 3cf2_A 99.9 1.4e-26 5.5e-31 228.7 >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* 10.1016/j.str.2008.02.010
PVCunit1_16 PAU_02804 PAU_02790 3zfk 3zfk_A 27.3 17 0.00066 27.9 >3zfk_A Colicin-E7; hydrolase, artificial metallonuclease, allosteric control; 1.70A {Escherichia coli} PDB: 1pt3_A 2jaz_B 3gkl_A 3gjn_B 3fbd_A 2jbg_B 2ivh_A 2jb0_B 1ujz_B 2erh_B 10.1039/c4mt00195h
PVCunit1_17 hrpN PAU_02791 2i88 2i88_A 59.7 2.2 8.8e-05 35.8 >2i88_A Colicin-E1; protein-membrane interactions, toxin-membrane interactions, toxin structure, voltage-gated channel, membrane protein; 2.50A {Escherichia coli} 10.1016/S0969-2126(97)00200-1
PVCunit1_18 PAU_02806 PAU_02792 1t6u 1t6u_A 22.8 23 0.00091 27.7 >1t6u_A Superoxide dismutase [NI]; nickel, 4-helix bundle, hexamer, nisod, SOD, high resolution, oxidoreductase; 1.30A {Streptomyces coelicolor} SCOP: a.24.22.1 PDB: 1t6q_A 1t6i_A 3g4z_A 3g4x_A 4ncq_A 3g50_A 1q0g_A 1q0f_A 1q0d_A 1q0k_A 1q0m_A 10.1021/bi0496081
PVCunit1_19 PAU_02807 PAU_02793 2fiq 2fiq_A 22.3 24 0.00094 30.9 >2fiq_A Putative tagatose 6-phosphate kinase 1; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics; 2.25A {Escherichia coli} SCOP: c.1.10.7 No DOI found.
PVCunit1_20 PAU_02808 PAU_02794 2chh 2chh_A 99.9 7e-33 2.8e-37 219.1 >2chh_A Protein RSC3288; lectin, sugar-binding protein, D-mannose, plant pathogen, hypothetical protein; HET: MAN BMA; 1.0A {Ralstonia solanacearum} SCOP: b.115.1.1 PDB: 1uqx_A* 10.1111/j.1365-2958.2004.04020.x
PVCpnf_1 PAK_3544 PAK_03203 3eaa 3eaa_A 75.7 0.59 2.4e-05 31.4 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVCpnf_2 PAK_3543 PAK_03202 3j9q 3j9q_A 100.0 5.6e-34 2.2e-38 239.7 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCpnf_3 PAK_3542 PAK_03201 3j9q 3j9q_A 99.9 8.9e-33 3.6e-37 238.7 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCpnf_4 PAK_3541 PAK_03200 3j9q 3j9q_A 99.9 1.2e-28 4.8e-33 210.3 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCpnf_5 PAK_3540 PAK_03199 3eaa 3eaa_A 91.8 0.018 7.3e-07 39.1 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVCpnf_6 PAK_3539 PAK_03198 2w4o 2w4o_A 57.7 2.5 0.0001 26.1 >2w4o_A Calcium/calmodulin-dependent protein kinase type; calmodulin-binding, nucleotide-binding, serine/threonine-Pro kinase, ATP-binding, phosphoprotein; HET: DKI; 2.17A {Homo sapiens} No DOI found.
PVCpnf_7 PAK_3538 PAK_03197 2cv8 2cv8_A 20.3 28 0.0011 25.6 >2cv8_A TRNA-splicing endonuclease; tRNA-intron endonuclease, structural genomics, NPPSFA; 2.80A {Sulfolobus tokodaii} No DOI found.
PVCpnf_8 PAK_3537 PAK_03196 2p5z 2p5z_X 99.9 7.6e-27 3e-31 211.4 >2p5z_X Type VI secretion system component; structural genomics, unknown function, PSI-2, protein struct initiative; 2.60A {Escherichia coli O6} SCOP: b.40.8.1 b.106.1.1 b.106.1.1 10.1073/pnas.0813360106
PVCpnf_9 PAK_3536 PAK_03195 2ia7 2ia7_A 99.7 2.4e-22 9.6e-27 131.9 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCpnf_10 PAK_3535 PAK_03194 1ukf 1ukf_A 67.4 1.3 5e-05 33.1 >1ukf_A Avirulence protein AVRPPH3; AVRPPHB, hypersensitive response, hydrolase; 1.35A {Pseudomonas syringae PV} SCOP: d.3.1.10 10.1073/pnas.2036536100
PVCpnf_11 PAK_3534 PAK_03193 3h2t 3h2t_A 95.7 0.00021 8.4e-09 69.6 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCpnf_12 PAK_3533 PAK_03192 2wfc 2wfc_A 30.4 13 0.00054 29.1 >2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina} No DOI found.
PVCpnf_13 PAK_3532 PAK_03191 3izo 3izo_F 96.8 6.6e-06 2.6e-10 80.6 >3izo_F Fiber; pentameric penton base, trimeri viral protein; 3.60A {Human adenovirus 5} 10.1016/j.jmb.2010.11.043
PVCpnf_14 PAK_3531 PAK_03190 3fx7 3fx7_A 27.9 16 0.00063 26.0 >3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} PDB: 2gts_A 10.1093/jb/mvp098
PVCpnf_15 PAK_3530 PAK_03189 3cf2 3cf2_A 99.8 4.6e-26 1.8e-30 225.1 >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* 10.1016/j.str.2008.02.010
PVCpnf_16 PAK_3529 PAK_03188 3t5s 3t5s_A 43.7 6 0.00024 27.7 >3t5s_A Gilaa.00834.A, macrophage migration inhibitory factor; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Giardia lamblia} 10.1007/s10969-013-9155-9
PVCpnf_17 PAK_3527 PAK_03187 3gqe 3gqe_A 53.1 3.4 0.00014 24.5 >3gqe_A Non-structural protein 3; macro domain, X domain, venezuelan equine encephalitis virus alphavirus; HET: BCN; 2.30A {Venezuelan equine encephalitis virus} PDB: 3gqo_A* 10.1128/JVI.00189-09
PVCpnf_18 PAK_3526 PAK_03186 3szp 3szp_A 99.7 1.9e-21 7.7e-26 124.5 >3szp_A Transcriptional regulator, LYSR family; winged helix-turn helix, DNA-binding, transcription factor; 2.20A {Vibrio cholerae} PDB: 3t1b_B 10.1111/j.1365-2958.2011.07919.x
PVCpnf_19 PAK_3525 PAK_03185 2vk9 2vk9_A 88.3 0.072 2.9e-06 49.7 >2vk9_A Alpha-toxin; glycosyltransferase; 2.85A {Clostridium novyi} SCOP: c.68.1.22 10.1016/j.jmb.2007.12.065
PVCpnf_20 PAK_3524 PAK_03184 2anv 2anv_A 99.4 6.5e-17 2.6e-21 93.3 >2anv_A Lysozyme; direct methods, lanthinide binding sites, hydrolase; 1.04A {Enterobacteria phage P22} PDB: 2anx_A 10.1107/S0907444905037212
PVCpnf_21 PAK_3523 PAK_03183 3hdf 3hdf_A 99.7 6.7e-23 2.7e-27 126.2 >3hdf_A Lysozyme; antimicrobial, bacteriolytic enzyme, glycosid hydrolase, late protein; 1.70A {Enterobacteria phage P21} 10.1038/nsmb.1681
PVCpnf_22 PAK_3522 PAK_03182 1l8d 1l8d_A 73.7 0.73 2.9e-05 29.6 >1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1 10.1038/nature00922
PVCpnf_23 PAK_3521 PAK_03181 3hdf 3hdf_A 100.0 8.8e-43 3.5e-47 231.9 >3hdf_A Lysozyme; antimicrobial, bacteriolytic enzyme, glycosid hydrolase, late protein; 1.70A {Enterobacteria phage P21} 10.1038/nsmb.1681
PVCcif_1 PAK_1969 PAK_01787 1tvs 1tvs_A 33.0 11 0.00046 25.9 >1tvs_A Transactivator protein; transcription regulation; NMR {Equine infectious anemia virus} SCOP: j.40.1.1 PDB: 1tvt_A 10.1111/j.1432-1033.1994.0855b.x
PVCcif_2 PAK_1970 PAK_01788 3j9q 3j9q_A 100.0 3.3e-34 1.3e-38 242.0 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCcif_3 PAK_1971 PAK_01789 3j9q 3j9q_A 99.9 1.8e-31 7.1e-36 233.3 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCcif_4 PAK_1972 PAK_01790 3j9q 3j9q_A 99.9 1.7e-27 6.7e-32 203.1 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCcif_5 PAK_1973 PAK_01791 3ix3 3ix3_A 19.4 30 0.0012 21.6 >3ix3_A Transcriptional activator protein LASR; quorum sensing receptor, triphenyl mimics, DNA- binding, quorum sensing; HET: OHN; 1.40A {Pseudomonas aeruginosa} PDB: 3ix4_A* 3ix8_A* 3jpu_A* 2uv0_E* 4ng2_A* No DOI found.
PVCcif_6 PAK_1974 PAK_01792 3rjr 3rjr_A 55.1 3.0 0.00012 26.2 >3rjr_A Transforming growth factor beta-1; TGF beta, activation, integrin, cytokine; HET: NAG; 3.05A {Sus scrofa} 10.1038/nature10152
PVCcif_7 PAK_1975 PAK_01793 3vu9 3vu9_A 31.2 13 0.00051 31.3 >3vu9_A PSY3, platinum sensitivity protein 3; DNA repair, recombination, DNA binding protein; 1.75A {Saccharomyces cerevisiae} PDB: 4dt1_B 4eq6_B 10.1038/ncomms2678
PVCcif_8 PAK_1976 PAK_01794 2p5z 2p5z_X 99.9 1.1e-27 4.5e-32 216.6 >2p5z_X Type VI secretion system component; structural genomics, unknown function, PSI-2, protein struct initiative; 2.60A {Escherichia coli O6} SCOP: b.40.8.1 b.106.1.1 b.106.1.1 10.1073/pnas.0813360106
PVCcif_9 PAK_1977 PAK_01795 2ia7 2ia7_A 99.7 1.3e-22 5.1e-27 134.1 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCcif_10 PAK_1978 PAK_01796 1ytl 1ytl_A 45.5 5.4 0.00022 26.7 >1ytl_A Acetyl-COA decarboxylase/synthase complex epsilon 2; structural genomics; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6 No DOI found.
PVCcif_11 PAK_1979 PAK_01797 3h2t 3h2t_A 94.4 0.0023 9.2e-08 63.5 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCcif_12 PAK_1980 PAK_01798 1fho 1fho_A 74.1 0.7 2.8e-05 36.3 >1fho_A UNC-89; pleckstrin homology domain, electrostatics, muscle, signal transduction, signaling protein; NMR {Caenorhabditis elegans} SCOP: b.55.1.1 10.1016/S0969-2126(00)00509-8
PVCcif_13 PAK_1981 PAK_01799 1ocy 1ocy_A 98.2 7.3e-10 2.9e-14 87.7 >1ocy_A Bacteriophage T4 short tail fibre; structural protein, fibrous protein, LIPO-polysaccharide binding, bacteriophage structural protein; HET: CIT; 1.5A {Bacteriophage T4} SCOP: d.231.1.1 10.1016/S0022-2836(03)00755-1
PVCcif_14 PAK_1982 PAK_01800 2l55 2l55_A 17.6 35.0 0.0014 26.4 >2l55_A SILB,silver efflux protein, MFP component of the components proton antiporter metal...; APO form, AG(I)-binding site; NMR {Cupriavidus metallidurans} 10.1021/bi200005k
PVCcif_15 PAK_1983 PAK_01801 3cf2 3cf2_A 99.8 2.1e-23 8.3e-28 206.0 >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* 10.1016/j.str.2008.02.010
PVCcif_16 PAK_1984 PAK_01802 2l3m 2l3m_A 38.9 8 0.00032 21.5 >2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis} No DOI found.
PVCcif_17 PAK_1985 PAK_01803 3eir 3eir_A 100.0 4.9e-85 2e-89 581.5 >3eir_A Putative ATP/GTP binding protein; papain-like fold, unknown function; 2.10A {Burkholderia pseudomallei} PDB: 3eit_A 3gqm_A 4hcp_A 4hcn_A 10.1073/pnas.0900212106
PVCcif_18 PAK_1986 PAK_01804 3r2n 3r2n_A 36.0 9.5 0.00038 27.7 >3r2n_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.30A {Mycobacterium leprae} 10.1016/j.tube.2014.12.003
PVCcif_19 PAK_1987 PAK_01805 1tii 1tii_A 97.1 1.5e-06 6.1e-11 68.1 >1tii_A LT-IIB, heat labIle enterotoxin type IIB; ADP-ribosyl transferase, ADP-ribosylation, ganglioside receptor; 2.25A {Escherichia coli} SCOP: d.166.1.1 10.1016/S0969-2126(96)00073-1
PVCcif_20 PAK_1988 PAK_01806 3mw6 3mw6_A 74.2 0.69 2.8e-05 35.9 >3mw6_A Uncharacterized protein NMB1681; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.21A {Neisseria meningitidis} No DOI found.
PVClumt_0 PAK_2217
PVClumt_1 PAK_2216 PAK_02014 3eaa 3eaa_A 60.8 2.1 8.2e-05 28.7 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVClumt_2 PAK_2215 PAK_02013 3j9q 3j9q_A 99.5 7.4e-19 2.9e-23 148.6 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClumt_3 PAK_2214 PAK_02012 3j9q 3j9q_A 98.2 1.1e-09 4.6e-14 75.3 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClumt_4 PAK_2213 PAK_02011 3j9q 3j9q_A 99.9 7.7e-27 3.1e-31 198.4 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClumt_5 PAK_2212 PAK_02010 3eaa 3eaa_A 68.6 1.1 4.6e-05 30.1 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVClumt_6 PAK_2211 PAK_02009 1use 1use_A 68.7 1.1 4.5e-05 24.0 >1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A 10.1073/pnas.0403069101
PVClumt_7 PAK_2210 PAK_02008 2cvi 2cvi_A 24.1 21 0.00083 21.6 >2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A No DOI found.
PVClumt_8 PAK_2209 PAK_02007 2p5z 2p5z_X 99.7 1e-21 4e-26 177.1 >2p5z_X Type VI secretion system component; structural genomics, unknown function, PSI-2, protein struct initiative; 2.60A {Escherichia coli O6} SCOP: b.40.8.1 b.106.1.1 b.106.1.1 10.1073/pnas.0813360106
PVClumt_9 PAK_2208 PAK_02006 2ia7 2ia7_A 99.7 8.3e-21 3.3e-25 125.5 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVClumt_10 PAK_2207 PAK_02005 1b0a 1b0a_A 60.7 2.1 8.3e-05 30.6 >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 10.1110/ps.8.6.1342
PVClumt_11 PAK_2206 PAK_02004 2kcp 2kcp_A 39.0 8.0 0.00032 30.1 >2kcp_A 30S ribosomal protein S8E; RPS8E, beta, NESG, ribonucleoprotein, structural genomics, PSI-2; NMR {Methanothermobacter thermautotrophicusstr} PDB: 2kcy_A No DOI found.
PVClumt_96 PAK_2205 PAK_02003 3h2t 3h2t_A 94.8 0.0013 5.4e-08 55.0 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVClumt_12 PAK_2204 PAK_02002 1yo5 1yo5_C 43.3 6.1 0.00024 32.7 >1yo5_C SAM pointed domain containing ETS transcription factor; protein-DNA complex, double helix, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.4.5.21 10.1021/bi047352t
PVClumt_13 PAK_2203 PAK_02001 1v1h 1v1h_A 95.3 0.00056 2.2e-08 49.6 >1v1h_A Fibritin, fiber protein; chimera; 1.9A {Human adenovirus type 2} SCOP: b.83.1.1 h.1.17.1 PDB: 1v1i_A 10.1016/j.jmb.2004.07.008
PVClumt_97 PAK_2202 PAK_02000 1osn 1osn_A 28.3 16 0.00062 33.8 >1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1 10.1074/jbc.M302025200
PVClumt_98 PAK_2201 PAK_01999 2wgn 2wgn_B 43.6 6.1 0.00024 28.9 >2wgn_B Inhibitor of cysteine peptidase compnd 3; hydrolase inhibitor, dynamics, peptidase inhibitor, cathepsi hydrolase inhibitor; NMR {Pseudomonas aeruginosa} No DOI found.
PVClumt_99 PAK_2200 PAK_01998 3k8p 3k8p_C 37.3 8.8 0.00035 34.5 >3k8p_C DSL1, KLLA0C02695P; intracellular trafficking, DSL1 complex, multisubunit tethering complex, snare proteins; 2.60A {Kluyveromyces lactis} 10.1016/j.cell.2009.11.002
PVClumt_15 PAK_2199 PAK_01997 3cf2 3cf2_A 99.9 4.2e-27 1.7e-31 232.7 >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* 10.1016/j.str.2008.02.010
PVClumt_16 PAK_2198 PAK_01996 3lfh 3lfh_A 44.4 5.8 0.00023 29.5 >3lfh_A Manxa, phosphotransferase system, mannose/fructose-speci component IIA; PTS; 1.80A {Thermoanaerobacter tengcongensis} No DOI found.
PVClumt_17 PAK_2197 PAK_01995 1wrd 1wrd_A 31.1 13 0.00052 30.8 >1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1 PDB: 2n2n_A 10.1016/j.febslet.2005.08.076
PVClumt_18 PAK_2195 PAK_01994 1ukf 1ukf_A 89.4 0.051 2e-06 51.3 >1ukf_A Avirulence protein AVRPPH3; AVRPPHB, hypersensitive response, hydrolase; 1.35A {Pseudomonas syringae PV} SCOP: d.3.1.10 10.1073/pnas.2036536100
PVClopT_1 PAK_2092 PAK_01896 3eaa 3eaa_A 77.9 0.46 1.8e-05 31.8 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVClopT_2 PAK_2091 PAK_01895 3j9q 3j9q_A 100.0 4.5e-35 1.8e-39 245.9 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClopT_4 PAK_2090 PAK_01894 3j9q 3j9q_A 99.9 2e-29 7.9e-34 214.5 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClopT_5 PAK_2089 PAK_01893 3eaa 3eaa_A 61.6 2.0 7.8e-05 28.8 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVClopT_6 PAK_2088 PAK_01892 3kxe 3kxe_C 31.5 13 0.0005 19.5 >3kxe_C Antitoxin protein PARD-1; complex, TA system, protein binding; 2.60A {Caulobacter crescentus NA1000} 10.1021/bi902133s
PVClopT_7 PAK_2087 PAK_01891 3r06 3r06_A 52.2 3.6 0.00014 24.9 >3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B* 10.1074/jbc.M111.332783
PVClopT_8 PAK_2086 PAK_01890 2p5z 2p5z_X 99.9 1.3e-27 5.2e-32 216.2 >2p5z_X Type VI secretion system component; structural genomics, unknown function, PSI-2, protein struct initiative; 2.60A {Escherichia coli O6} SCOP: b.40.8.1 b.106.1.1 b.106.1.1 10.1073/pnas.0813360106
PVClopT_9 PAK_2085 PAK_01889 2ia7 2ia7_A 99.8 1.3e-24 5.3e-29 140.9 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVClopT_10 PAK_2084 PAK_01888 3ojo 3ojo_A 70.4 0.98 3.9e-05 34.2 >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* 10.1074/jbc.M110.216002
PVClopT_11 PAK_2083 PAK_01887 3h2t 3h2t_A 94.9 0.0011 4.4e-08 68.5 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVClopT_12 PAK_2082 PAK_01886 1pqx 1pqx_A 37.7 8.6 0.00034 31.5 >1pqx_A Conserved hypothetical protein; ZR18,structure, autostructure,spins,autoassign, northeast structural genomics consortium; NMR {Staphylococcus aureus subsp} SCOP: d.267.1.1 PDB: 2ffm_A 2m6q_A 2m8w_A No DOI found.
PVClopT_14 PAK_2081 PAK_01885 1nvp 1nvp_B 31.0 13 0.00052 26.2 >1nvp_B Transcription initiation factor IIA alpha chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: a.32.1.1 10.1016/S0022-2836(03)00887-8
PVClopT_15 PAK_2080 PAK_01884 3cf2 3cf2_A 99.8 1.7e-24 6.6e-29 213.7 >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* 10.1016/j.str.2008.02.010
PVClopT_16 PAK_2079 PAK_01883 1osd 1osd_A 16.7 38 0.0015 18.8 >1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A 10.1016/j.jmb.2004.03.022
PVClopT_17 PAK_2078 PAK_01882 2l1n 2l1n_A 52.8 3.5 0.00014 27.8 >2l1n_A Uncharacterized protein; DUF1823, hypothetical protein, cyanobacteria, structural GEN PSI-biology, protein structure initiative; NMR {Synechococcus elongatus} No DOI found.
PVClopT_18 PAK_2077 PAK_01881 1ukf 1ukf_A 99.9 1.3e-26 5.1e-31 195.4 >1ukf_A Avirulence protein AVRPPH3; AVRPPHB, hypersensitive response, hydrolase; 1.35A {Pseudomonas syringae PV} SCOP: d.3.1.10 10.1073/pnas.2036536100
PVClopT_19 PAK_2075 PAK_01880 2qn0 2qn0_A 92.8 0.01 4e-07 64.2 >2qn0_A Neurotoxin; botulism, snares, protease; 1.75A {Clostridium botulinum} PDB: 3deb_A 10.1021/bi701162d
PVCunit1_1 PAK_2876 PAK_02606 3eaa 3eaa_A 67.8 1.2 4.9e-05 29.8 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVCunit1_2 PAK_2877 PAK_02607 3j9q 3j9q_A 100.0 9e-34 3.6e-38 238.8 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit1_3 PAK_2878 PAK_02608 3j9q 3j9q_A 99.9 1.8e-33 7.3e-38 244.0 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit1_4 PAK_2879 PAK_02609 3j9q 3j9q_A 99.9 9.4e-30 3.7e-34 217.1 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit1_5 PAK_2880 PAK_02610 3v4h 3v4h_A 56.6 2.7 0.00011 29.6 >3v4h_A Hypothetical protein; structural genomics, center for structural genomics of infec diseases, csgid, unknown function; 2.10A {Yersinia pestis} No DOI found.
PVCunit1_6 PAK_2881 PAK_02611 3pry 3pry_A 48.3 4.6 0.00018 26.4 >3pry_A Heat shock protein HSP 90-beta; structural genomics, structural genomics consortium, SGC, HE protein, chaperone; 2.28A {Homo sapiens} No DOI found.
PVCunit1_7 PAK_2882 PAK_02612 1q1a 1q1a_A 30.0 14 0.00055 28.2 >1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A* 10.1016/j.str.2003.09.016
PVCunit1_8 PAK_2883 PAK_02613 2p5z 2p5z_X 99.9 9.3e-29 3.7e-33 223.7 >2p5z_X Type VI secretion system component; structural genomics, unknown function, PSI-2, protein struct initiative; 2.60A {Escherichia coli O6} SCOP: b.40.8.1 b.106.1.1 b.106.1.1 10.1073/pnas.0813360106
PVCunit1_9 PAK_2884 PAK_02614 2ia7 2ia7_A 99.7 1.6e-21 6.4e-26 128.9 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCunit1_10 PAK_2885 PAK_02615 3ojo 3ojo_A 34.3 11 0.00042 28.4 >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* 10.1074/jbc.M110.216002
PVCunit1_11 PAK_2886 PAK_02616 3h2t 3h2t_A 95.3 0.00058 2.3e-08 67.9 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCunit1_12 PAK_2887 PAK_02617 2xem 2xem_A 29.5 14 0.00057 29.2 >2xem_A DYNE7, TEBC; biosynthetic protein, polyketide biosynthesis, enediyne anti agent, thioesterase; HET: SSV; 2.10A {Micromonospora chersina} PDB: 2xfl_A 10.1016/j.jmb.2010.09.041
PVCunit1_13 PAK_2888 PAK_02618 3izo 3izo_F 99.0 1.7e-13 6.8e-18 136.3 >3izo_F Fiber; pentameric penton base, trimeri viral protein; 3.60A {Human adenovirus 5} 10.1016/j.jmb.2010.11.043
PVCunit1_14 PAK_2889 PAK_02619 3dzd 3dzd_A 20.9 27 0.0011 27.1 >3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A 10.1016/j.jmb.2008.10.024
PVCunit1_15 PAK_2890 PAK_02620 3cf2 3cf2_A 99.8 4.4e-26 1.7e-30 225.1 >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* 10.1016/j.str.2008.02.010
PVCunit1_16 PAK_2891 PAK_02621 3ggm 3ggm_A 24.4 20 0.00081 21.1 >3ggm_A Uncharacterized protein BT9727_2919; bacillus cereus group., structural genomics, PSI-2, protein structure initiative; 2.00A {Bacillus thuringiensis serovarkonkukian} No DOI found.
PVCunit1_17 PAK_2892 PAK_02622 1cii 1cii_A 61.3 2.0 7.9e-05 41.3 >1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1 10.1038/385461a0
PVCunit1_18 PAK_2893 PAK_02623 1t6u 1t6u_A 22.4 24 0.00094 27.7 >1t6u_A Superoxide dismutase [NI]; nickel, 4-helix bundle, hexamer, nisod, SOD, high resolution, oxidoreductase; 1.30A {Streptomyces coelicolor} SCOP: a.24.22.1 PDB: 1t6q_A 1t6i_A 3g4z_A 3g4x_A 4ncq_A 3g50_A 1q0g_A 1q0f_A 1q0d_A 1q0k_A 1q0m_A 10.1021/bi0496081
PVCunit1_19 PAK_2894 PAK_02624 3fnb 3fnb_A 67.1 1.3 5.2e-05 34.1 >3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix bundle, structural genomics protein structure initiative; HET: PGE; 2.12A {Streptococcus mutans} No DOI found.
PVCunit1_20 PAK_2895 PAK_02625 1ocy 1ocy_A 97.0 3e-06 1.2e-10 62.6 >1ocy_A Bacteriophage T4 short tail fibre; structural protein, fibrous protein, LIPO-polysaccharide binding, bacteriophage structural protein; HET: CIT; 1.5A {Bacteriophage T4} SCOP: d.231.1.1 10.1016/S0022-2836(03)00755-1
PVCunit1_21 PAK_2896 PAK_02626 2chh 2chh_A 100.0 4.5e-35 1.8e-39 231.5 >2chh_A Protein RSC3288; lectin, sugar-binding protein, D-mannose, plant pathogen, hypothetical protein; HET: MAN BMA; 1.0A {Ralstonia solanacearum} SCOP: b.115.1.1 PDB: 1uqx_A* 10.1111/j.1365-2958.2004.04020.x
PVCcif_1 plu2531 PLT_02568 3jqo 3jqo_B 40.5 7.2 0.00029 26.8 >3jqo_B TRAO protein; helical outer membrane TM, outer membrane protein complex, T protein; HET: LDA; 2.60A {Escherichia coli} PDB: 3zbi_B 2ofq_A 10.1038/nature08588
PVCcif_2 plu2530 PLT_02567 3j9q 3j9q_A 99.9 1.5e-31 6e-36 225.6 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCcif_3 plu2529 PLT_02566 3j9q 3j9q_A 100.0 1.3e-35 5.3e-40 257.8 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCcif_4 plu2528 PLT_02565 3j9q 3j9q_A 99.9 2.2e-28 8.6e-33 208.5 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCcif_5 plu2527 PLT_02564 3eaa 3eaa_A 64.4 1.6 6.4e-05 29.3 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVCcif_6 plu2526 PLT_02563 1use 1use_A 63.2 1.7 6.9e-05 23.2 >1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A 10.1073/pnas.0403069101
PVCcif_7 plu2525 PLT_02562 2i8d 2i8d_A 22.4 23 0.00094 23.3 >2i8d_A Uncharacterized conserved protein of COG5646; ZP_00384875.1, structural genomics, PSI-2, protein structure initiative; HET: MSE UNL; 1.69A {Lactobacillus casei} SCOP: d.198.4.1 No DOI found.
PVCcif_8 plu2524 PLT_02561 2p5z 2p5z_X 99.9 1.5e-26 5.8e-31 209.3 >2p5z_X Type VI secretion system component; structural genomics, unknown function, PSI-2, protein struct initiative; 2.60A {Escherichia coli O6} SCOP: b.40.8.1 b.106.1.1 b.106.1.1 10.1073/pnas.0813360106
PVCcif_9 plu2523 PLT_02560 2ia7 2ia7_A 99.8 6.3e-26 2.5e-30 148.8 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCcif_10 plu2522 PLT_02559 2vb2 2vb2_X 69.6 1.1 4.2e-05 28.8 >2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X 10.1038/nchembio.2007.57
PVCcif_11 plu2521 PLT_02558 3h2t 3h2t_A 95.3 0.00061 2.4e-08 67.9 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCcif_12 plu2520 PLT_02557 1fho 1fho_A 68.9 1.1 4.5e-05 35.0 >1fho_A UNC-89; pleckstrin homology domain, electrostatics, muscle, signal transduction, signaling protein; NMR {Caenorhabditis elegans} SCOP: b.55.1.1 10.1016/S0969-2126(00)00509-8
PVCcif_13 plu2519 PLT_02556 2xgf 2xgf_A 96.6 1.2e-05 4.8e-10 69.2 >2xgf_A Long tail fiber protein P37; viral protein; 2.20A {Enterobacteria phage T4} 10.1073/pnas.1011218107
PVCcif_14 plu2518 PLT_02555 3b1j 3b1j_C 40.0 7.5 0.0003 25.8 >3b1j_C CP12; alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_C* 10.1016/j.str.2011.08.016
PVCcif_15 plu2517 PLT_02554 3cf2 3cf2_A 99.8 1.1e-25 4.4e-30 222.3 >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* 10.1016/j.str.2008.02.010
PVCcif_16 plu2516 PLT_02553 3d4u 3d4u_A 42.6 6.4 0.00026 30.9 >3d4u_A Tafia, carboxypeptidase B2; protease-inhibitor complex, glycoprotein, hydrolase, metal-binding, metalloprotease, protease, secret zymogen; 1.70A {Bos taurus} PDB: 3lms_A 10.1016/j.molcel.2008.05.031
PVCcif_17 plu2515 PLT_02552 3eir 3eir_A 100.0 1.9e-91 7.6e-96 624.5 >3eir_A Putative ATP/GTP binding protein; papain-like fold, unknown function; 2.10A {Burkholderia pseudomallei} PDB: 3eit_A 3gqm_A 4hcp_A 4hcn_A 10.1073/pnas.0900212106
PVCcif_18 plu2514 PLT_02551 3wmi 3wmi_B 27.4 16 0.00066 25.0 >3wmi_B EIAV GP45 wild type; alpha-helix, virus fusion, viral protein; 1.90A {Equine} PDB: 3wmj_B No DOI found.
PVClopT_1 plu2385 PLT_02424 3eaa 3eaa_A 79.2 0.4 1.6e-05 32.3 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVClopT_2 plu2386 PLT_02425 3j9q 3j9q_A 99.9 4.9e-33 2e-37 234.2 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClopT_3 plu2387 PLT_02426 3j9q 3j9q_A 100.0 4.6e-34 1.8e-38 245.7 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClopT_4 plu2388 PLT_02427 3j9q 3j9q_A 99.9 7e-31 2.8e-35 223.2 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClopT_5 plu2389 PLT_02428 3eaa 3eaa_A 55.4 2.9 0.00012 27.9 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVClopT_6 plu2390 PLT_02429 1rh4 1rh4_A 46.3 5.1 0.0002 21.4 >1rh4_A Right-handed coiled coil tetramer; de novo design; 1.90A {Synthetic construct} SCOP: k.17.1.1 10.1126/science.282.5393.1462
PVClopT_7 plu2391 PLT_02430 3riy 3riy_A 28.4 15 0.00061 27.4 >3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase, posttranslational modification, binding domain, rossmann fold domain; HET: SLL NAD; 1.55A {Homo sapiens} PDB: 3rig_A* 4f4u_A* 4f56_A* 4hda_A* 2b4y_A* 2nyr_A* 4g1c_A* 4utv_A* 4utn_A 4utr_A* 4utx_A* 4utz_A* 4uu7_A* 4uu8_A* 4uua_A* 4uub_A* 10.1126/science.1207861
PVClopT_8 plu2392 PLT_02431 2p5z 2p5z_X 99.9 2.6e-30 1e-34 233.9 >2p5z_X Type VI secretion system component; structural genomics, unknown function, PSI-2, protein struct initiative; 2.60A {Escherichia coli O6} SCOP: b.40.8.1 b.106.1.1 b.106.1.1 10.1073/pnas.0813360106
PVClopT_9 plu2393 PLT_02432 2ia7 2ia7_A 99.8 1.5e-24 6.1e-29 142.4 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVClopT_10 plu2394 PLT_02433 1ytl 1ytl_A 46.9 5 0.0002 26.9 >1ytl_A Acetyl-COA decarboxylase/synthase complex epsilon 2; structural genomics; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6 No DOI found.
PVClopT_11 plu2395 PLT_02434 3h2t 3h2t_A 96.5 2.4e-05 9.6e-10 80.8 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVClopT_12 plu2396 PLT_02435 1pqx 1pqx_A 47.9 4.7 0.00019 33.2 >1pqx_A Conserved hypothetical protein; ZR18,structure, autostructure,spins,autoassign, northeast structural genomics consortium; NMR {Staphylococcus aureus subsp} SCOP: d.267.1.1 PDB: 2ffm_A 2m6q_A 2m8w_A No DOI found.
PVClopT_14 plu2397 PLT_02436 2j9w 2j9w_A 29.6 14 0.00057 29.3 >2j9w_A VPS28, VPS28-PROV protein; NZF finger, HIV budding, protein transport; 1.30A {Xenopus laevis} 10.1038/sj.emboj.7601501
PVClopT_15 plu2398 PLT_02437 3cf2 3cf2_A 99.8 1.2e-25 5e-30 221.8 >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* 10.1016/j.str.2008.02.010
PVClopT_16 plu2399 PLT_02438 2w50 2w50_A 20.2 28 0.0011 26.4 >2w50_A ArMet-like protein 1; MANF, CDNF, saposin, secreted, ER stress, alternative splicing, hormone, growth factor, neurotrophic factor; 1.60A {Homo sapiens} PDB: 2lpn_A 10.1093/protein/gzn080
PVClopT_17 plu2400 PLT_02439 2ebf 2ebf_X 100.0 8.6e-82 3.4e-86 645.6 >2ebf_X Dermonecrotic toxin; pasteurella multocida toxin, trojan horse-like fold; HET: TRE; 1.90A {Pasteurella multocida} SCOP: a.296.1.1 c.150.1.2 d.3.1.17 PDB: 2ec5_A 2ebh_X* 10.1073/pnas.0608197104
PVClopT_18 plu2401 PLT_02440 1ukf 1ukf_A 99.9 1.3e-26 5.3e-31 195.2 >1ukf_A Avirulence protein AVRPPH3; AVRPPHB, hypersensitive response, hydrolase; 1.35A {Pseudomonas syringae PV} SCOP: d.3.1.10 10.1073/pnas.2036536100
PVCunit1_1 plu1730 PLT_01758 3eaa 3eaa_A 71.9 0.86 3.4e-05 30.6 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVCunit1_2 plu1729 PLT_01757 3j9q 3j9q_A 100.0 3e-35 1.2e-39 247.4 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit1_3 plu1728 PLT_01756 3j9q 3j9q_A 100.0 6.5e-34 2.6e-38 246.9 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit1_4 plu1727 PLT_01755 3j9q 3j9q_A 99.9 9.7e-30 3.9e-34 216.4 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit1_5 plu1726 PLT_01754 3eaa 3eaa_A 80.0 0.35 1.4e-05 32.6 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVCunit1_6 plu1725 PLT_01753 1use 1use_A 58.6 2.4 9.6e-05 22.6 >1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A 10.1073/pnas.0403069101
PVCunit1_7 plu1724 PLT_01752 2mhd 2mhd_A 27.0 17 0.00067 27.6 >2mhd_A Uncharacterized protein; lipocalin 4, beta barrel, structural genomics, unknown funct; NMR {Bacteroides uniformis} No DOI found.
PVCunit1_8 plu1723 PLT_01751 2p5z 2p5z_X 99.9 5.7e-29 2.3e-33 225.1 >2p5z_X Type VI secretion system component; structural genomics, unknown function, PSI-2, protein struct initiative; 2.60A {Escherichia coli O6} SCOP: b.40.8.1 b.106.1.1 b.106.1.1 10.1073/pnas.0813360106
PVCunit1_9 plu1722 PLT_01750 2ia7 2ia7_A 99.3 1.3e-15 5.2e-20 107.0 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCunit1_10 plu1721 PLT_01749 3v2h 3v2h_A 33.5 11 0.00044 24.0 >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} No DOI found.
PVCunit1_11 plu1720 PLT_01748 3h2t 3h2t_A 93.3 0.0066 2.6e-07 60.4 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCunit1_12 plu1719 PLT_01747 1pqx 1pqx_A 51.1 3.9 0.00015 33.5 >1pqx_A Conserved hypothetical protein; ZR18,structure, autostructure,spins,autoassign, northeast structural genomics consortium; NMR {Staphylococcus aureus subsp} SCOP: d.267.1.1 PDB: 2ffm_A 2m6q_A 2m8w_A No DOI found.
PVCunit1_13 plu1718 PLT_01746 1ocy 1ocy_A 97.5 1.9e-07 7.5e-12 77.7 >1ocy_A Bacteriophage T4 short tail fibre; structural protein, fibrous protein, LIPO-polysaccharide binding, bacteriophage structural protein; HET: CIT; 1.5A {Bacteriophage T4} SCOP: d.231.1.1 10.1016/S0022-2836(03)00755-1
PVCunit1_14 plu1717 PLT_01745 2yy0 2yy0_A 10.8 71.0 0.0028 22.5 >2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens} No DOI found.
PVCunit1_15 plu1716 PLT_01744 3cf2 3cf2_A 99.8 6e-24 2.4e-28 209.9 >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* 10.1016/j.str.2008.02.010
PVCunit1_16 plu1715 PLT_01743 3ggm 3ggm_A 19.3 30 0.0012 21.4 >3ggm_A Uncharacterized protein BT9727_2919; bacillus cereus group., structural genomics, PSI-2, protein structure initiative; 2.00A {Bacillus thuringiensis serovarkonkukian} No DOI found.
PVCunit1_17 plu1714 PLT_01742 1eb6 1eb6_A 84.2 0.19 7.4e-06 32.3 >1eb6_A Neutral protease II; metalloproteinase, zinc, hydrolase; 1.0A {Aspergillus oryzae} SCOP: d.92.1.12 10.1107/S090744490101335X
PVCunit1_18 plu1713 PLT_01741 2hwn 2hwn_E 27.0 17 0.00068 21.9 >2hwn_E A kinase binding peptide; PKA, AKAP, dimerization/docking, D/D, regulatory subunit, TR; 1.60A {Rattus norvegicus} 10.1016/j.molcel.2006.09.015
PVCunit1_19 plu1712 PLT_01740 1yrt 1yrt_A 98.0 5.1e-09 2e-13 96.0 >1yrt_A Bifunctional hemolysin-adenylate cyclase; CYAA, layse, toxin; 2.10A {Bordetella pertussis} PDB: 1yru_A 1zot_A* 2col_A 10.1038/sj.emboj.7600800
PVCunit2_1 plu1708 PLT_01736 3eaa 3eaa_A 62.3 1.9 7.4e-05 28.9 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVCunit2_2 plu1707 PLT_01735 3j9q 3j9q_A 99.9 1.8e-33 7e-38 236.9 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit2_3 plu1706 PLT_01734 3j9q 3j9q_A 100.0 3.2e-34 1.3e-38 250.7 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit2_4 plu1705 PLT_01733 3j9q 3j9q_A 99.9 8.1e-30 3.2e-34 217.5 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit2_5 plu1704 PLT_01732 1vk9 1vk9_A 31.7 12 0.00049 27.4 >1vk9_A Conserved hypothetical protein TM1506; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: UNL; 2.70A {Thermotoga maritima} SCOP: c.97.1.3 10.1002/prot.21992
PVCunit2_6 plu1703 PLT_01731 3k4i 3k4i_A 57.4 2.6 0.0001 27.5 >3k4i_A Uncharacterized protein; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; 1.69A {Pseudomonas syringae PV} No DOI found.
PVCunit2_7 plu1702 PLT_01730 3riy 3riy_A 30.3 14 0.00054 27.7 >3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase, posttranslational modification, binding domain, rossmann fold domain; HET: SLL NAD; 1.55A {Homo sapiens} PDB: 3rig_A* 4f4u_A* 4f56_A* 4hda_A* 2b4y_A* 2nyr_A* 4g1c_A* 4utv_A* 4utn_A 4utr_A* 4utx_A* 4utz_A* 4uu7_A* 4uu8_A* 4uua_A* 4uub_A* 10.1126/science.1207861
PVCunit2_8 plu1701 PLT_01729 2p5z 2p5z_X 99.9 1.5e-29 5.8e-34 228.9 >2p5z_X Type VI secretion system component; structural genomics, unknown function, PSI-2, protein struct initiative; 2.60A {Escherichia coli O6} SCOP: b.40.8.1 b.106.1.1 b.106.1.1 10.1073/pnas.0813360106
PVCunit2_9 plu1700 PLT_01728 2ia7 2ia7_A 99.7 1.8e-22 7.1e-27 135.3 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCunit2_10 plu1699 PLT_01727 1pml 1pml_A 35.0 10 0.0004 21.1 >1pml_A Tissue plasminogen activator kringle 2; hydrolase(serine protease); 2.38A {Homo sapiens} SCOP: g.14.1.1 PDB: 1pk2_A* 1tpk_A 10.1002/pro.5560030605
PVCunit2_11 plu1698 PLT_01726 3h2t 3h2t_A 95.9 0.00015 6.1e-09 72.1 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCunit2_12 plu1697 PLT_01725 3sok 3sok_A 26.5 18 0.0007 29.4 >3sok_A Fimbrial protein; pilus subunit, extracellular, cell adhesion; 2.30A {Dichelobacter nodosus} 10.1074/jbc.M111.297242
PVCunit2_13 plu1696 PLT_01724 3izo 3izo_F 98.4 1e-10 4.1e-15 110.8 >3izo_F Fiber; pentameric penton base, trimeri viral protein; 3.60A {Human adenovirus 5} 10.1016/j.jmb.2010.11.043
PVCunit2_14 plu1695 PLT_01723 3f2k 3f2k_A 99.5 2.8e-18 1.1e-22 126.9 >3f2k_A Histone-lysine N-methyltransferase setmar; histone-lysine N-methyltransferase setmar, SET domain and mariner transposase fusion; 1.85A {Homo sapiens} PDB: 3k9k_A 3k9j_A No DOI found.
PVCunit2_15 plu1694 PLT_01722 2dgb 2dgb_A 21.1 26 0.001 25.9 >2dgb_A Hypothetical protein PURS; purine, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Thermus thermophilus} PDB: 2cuw_A No DOI found.
PVCunit2_16 plu1693 PLT_01721 3cf2 3cf2_A 99.8 7.2e-24 2.9e-28 209.1 >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* 10.1016/j.str.2008.02.010
PVCunit2_17 plu1692 PLT_01720 3ggm 3ggm_A 55.2 3.0 0.00012 26.3 >3ggm_A Uncharacterized protein BT9727_2919; bacillus cereus group., structural genomics, PSI-2, protein structure initiative; 2.00A {Bacillus thuringiensis serovarkonkukian} No DOI found.
PVCunit2_18 plu1691 PLT_01719 3u8p 3u8p_A 21.3 26.0 0.001 31.5 >3u8p_A Cytochrome B562 integral fusion with enhanced GRE fluorescent protein; directed evolution, domain insertion, energy transfer, fluor quenching; HET: CRO HEM; 2.75A {Aequorea victoria} 10.1021/ja301987h
PVCunit2_19 plu1690 PLT_01718 2rio 2rio_A 78.5 0.43 1.7e-05 28.8 >2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* 10.1016/j.cell.2007.10.057
PVCunit2_20 plu1689 PLT_01717 2uuz 2uuz_A 36.2 9.4 0.00037 30.0 >2uuz_A GAMS, HOST-nuclease inhibitor protein GAM; recbcd inhibitor, putative DNA mimic; 2.3A {Bacteriophage lambda} PDB: 2uv1_A 10.1016/j.jmb.2007.05.037
PVCunit3_1 plu1689 PLT_01716 1klf 1klf_A 72.8 0.8 3.2e-05 31.2 >1klf_A FIMC chaperone, chaperone protein FIMC; adhesin-chaperone complex, mannose-bound, chaperone/adhesin complex complex; HET: MAN; 2.79A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 PDB: 1kiu_A* 3rfz_C 3sqb_A 4j3o_C 1qun_A 1bf8_A 1ze3_C 3bwu_C 3jwn_C 4dwh_A* 10.1046/j.1365-2958.2002.02915.x
PVCunit3_2 plu1688 PLT_01715 3j9q 3j9q_A 100.0 5.3e-34 2.1e-38 240.2 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit3_3 plu1687 PLT_01714 3j9q 3j9q_A 100.0 1e-33 4e-38 245.6 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit3_4 plu1686 PLT_01713 3j9q 3j9q_A 99.9 2.4e-29 9.7e-34 213.9 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit3_5 plu1685 PLT_01712 3eaa 3eaa_A 52.4 3.5 0.00014 27.5 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVCunit3_6 plu1684 PLT_01711 2hsg 2hsg_A 66.3 1.4 5.5e-05 25.6 >2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A* 10.1016/j.bbapap.2007.03.020
PVCunit3_7 plu1683 PLT_01710 1avo 1avo_B 24.6 20 0.0008 25.9 >1avo_B 11S regulator; proteasome activator, cell adhesion, interferon induction; 2.80A {Homo sapiens} SCOP: a.24.8.1 10.1038/37670
PVCunit3_8 plu1682 PLT_01709 2p5z 2p5z_X 99.9 8.7e-29 3.5e-33 223.9 >2p5z_X Type VI secretion system component; structural genomics, unknown function, PSI-2, protein struct initiative; 2.60A {Escherichia coli O6} SCOP: b.40.8.1 b.106.1.1 b.106.1.1 10.1073/pnas.0813360106
PVCunit3_9 plu1681 PLT_01708 2ia7 2ia7_A 99.7 4.8e-21 1.9e-25 126.6 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCunit3_10 plu1680 PLT_01707 3ncq 3ncq_A 37.6 8.6 0.00034 23.1 >3ncq_A Nitrogen regulatory protein P-II (GLNB-2); PII signaling, nucleotide binding, GLNK, signaling Pro; HET: ATP; 1.24A {Archaeoglobus fulgidus} PDB: 3ncp_A* 3ncr_A* 10.1016/j.jmb.2010.07.020
PVCunit3_11 plu1679 PLT_01706 3h2t 3h2t_A 93.9 0.004 1.6e-07 61.9 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCunit3_12 plu1678 PLT_01705 1pqx 1pqx_A 25.7 18 0.00074 29.4 >1pqx_A Conserved hypothetical protein; ZR18,structure, autostructure,spins,autoassign, northeast structural genomics consortium; NMR {Staphylococcus aureus subsp} SCOP: d.267.1.1 PDB: 2ffm_A 2m6q_A 2m8w_A No DOI found.
PVCunit3_13 plu1677 PLT_01704 1ocy 1ocy_A 96.5 2e-05 8.1e-10 63.6 >1ocy_A Bacteriophage T4 short tail fibre; structural protein, fibrous protein, LIPO-polysaccharide binding, bacteriophage structural protein; HET: CIT; 1.5A {Bacteriophage T4} SCOP: d.231.1.1 10.1016/S0022-2836(03)00755-1
PVCunit3_14 plu1676 PLT_01703 2qcp 2qcp_X 23.0 23 0.0009 26.4 >2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X 10.1110/ps.073021307
PVCunit3_15 plu1675 PLT_01702 3cf2 3cf2_A 99.8 1.2e-25 5e-30 221.9 >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* 10.1016/j.str.2008.02.010
PVCunit3_16 plu1674 PLT_01701 3ggm 3ggm_A 33.5 11 0.00044 22.7 >3ggm_A Uncharacterized protein BT9727_2919; bacillus cereus group., structural genomics, PSI-2, protein structure initiative; 2.00A {Bacillus thuringiensis serovarkonkukian} No DOI found.
PVCunit3_17 plu1673 PLT_01700 1sqr 1sqr_A 42.0 6.6 0.00026 24.9 >1sqr_A 50S ribosomal protein L35AE; PFR48, structure, autostructure, northeast structural genomics consortium, beta-barrel; NMR {Pyrococcus furiosus} SCOP: b.43.3.3 PDB: 2lp6_A No DOI found.
PVCunit3_18 plu1672 PLT_01699 3i6x 3i6x_A 17.2 36 0.0014 26.7 >3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical, calmodulin-binding, cell membrane, membrane, phosphoprotein, protein binding; 2.50A {Homo sapiens} 10.1021/acs.biochem.6b00745
PVCunit3_19 plu1671 PLT_01698 2l8k 2l8k_A 23.4 22 0.00087 28.6 >2l8k_A NSP7, non-structural protein 7; viral protein; NMR {Equine arteritis virus} 10.1128/JVI.00255-11
PVCunit4_1 plu1667 PLT_01696 3eaa 3eaa_A 69.5 1.1 4.3e-05 30.1 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVCunit4_2 plu1666 PLT_01695 3j9q 3j9q_A 99.9 1.7e-33 6.8e-38 237.1 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit4_3 plu1665 PLT_01694 3j9q 3j9q_A 100.0 6.6e-35 2.6e-39 254.0 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit4_4 plu1664 PLT_01693 3j9q 3j9q_A 99.9 1.3e-29 5e-34 217.0 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit4_5 plu1663 PLT_01692 3v4h 3v4h_A 54.6 3.1 0.00012 29.3 >3v4h_A Hypothetical protein; structural genomics, center for structural genomics of infec diseases, csgid, unknown function; 2.10A {Yersinia pestis} No DOI found.
PVCunit4_6 plu1662 PLT_01691 3hk4 3hk4_A 53.4 3.3 0.00013 21.0 >3hk4_A MLR7391 protein; NTF2-like protein, structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, lyase; HET: MSE; 1.96A {Mesorhizobium loti} No DOI found.
PVCunit4_7 plu1661 PLT_01690 2kjl 2kjl_A 35.0 10 0.0004 25.0 >2kjl_A Cyanovirin-N homolog; CVNH, lectin, sugar binding protein; NMR {Tuber borchii} PDB: 3hnu_X 3hnx_A 3hp8_A* 10.1016/j.str.2008.01.015
PVCunit4_8 plu1660 PLT_01689 2p5z 2p5z_X 99.9 1.7e-30 6.9e-35 235.0 >2p5z_X Type VI secretion system component; structural genomics, unknown function, PSI-2, protein struct initiative; 2.60A {Escherichia coli O6} SCOP: b.40.8.1 b.106.1.1 b.106.1.1 10.1073/pnas.0813360106
PVCunit4_9 plu1659 PLT_01688 2ia7 2ia7_A 99.7 6.5e-22 2.6e-26 132.6 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCunit4_10 plu1658 PLT_01687 1pml 1pml_A 31.3 13 0.00051 20.6 >1pml_A Tissue plasminogen activator kringle 2; hydrolase(serine protease); 2.38A {Homo sapiens} SCOP: g.14.1.1 PDB: 1pk2_A* 1tpk_A 10.1002/pro.5560030605
PVCunit4_11 plu1657 PLT_01686 3h2t 3h2t_A 95.2 0.00071 2.8e-08 67.3 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCunit4_12 plu1656 PLT_01685 3p9y 3p9y_A 31.8 12.0 0.00049 36.1 >3p9y_A CG14216, LD40846P; phosphatase, CIS proline, LMW PTP-like fold, RNA polymerase hydrolase; HET: N7P SEP SET IMD PG4; 2.10A {Drosophila melanogaster} PDB: 4imi_B* 4imj_B* 4ygx_B* 3fdf_A 3fmv_A 3omx_A 3omw_A 10.1074/jbc.M110.197129
PVCunit4_13 plu1655 PLT_01684 1ocy 1ocy_A 97.9 9e-09 3.6e-13 85.0 >1ocy_A Bacteriophage T4 short tail fibre; structural protein, fibrous protein, LIPO-polysaccharide binding, bacteriophage structural protein; HET: CIT; 1.5A {Bacteriophage T4} SCOP: d.231.1.1 10.1016/S0022-2836(03)00755-1
PVCunit4_14 plu1654 PLT_01683 3soo 3soo_A 11.9 62.0 0.0025 24.9 >3soo_A LINE-1 type transposase domain-containing protein; alpha/beta protein, structural genomics, joint center for ST genomics, JCSG; 2.73A {Homo sapiens} PDB: 2lr6_A No DOI found.
PVCunit4_15 plu1653 PLT_01682 3cf2 3cf2_A 99.8 4.3e-25 1.7e-29 218.2 >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* 10.1016/j.str.2008.02.010
PVCunit4_16 plu1652 PLT_01681 2k2p 2k2p_A 18.7 32 0.0013 21.7 >2k2p_A Uncharacterized protein ATU1203; putative metal-binding domain ATU1203, ontario centre for ST proteomics, structural genomics; NMR {Agrobacterium tumefaciens str} PDB: 2n4c_A 2n4d_A No DOI found.
PVCunit4_17 plu1651 PLT_01680 2yy0 2yy0_A 43.3 6.1 0.00024 26.5 >2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens} No DOI found.
PVCpnf1 PAU_03353 PAU_03392 3eaa 3eaa_A 62.9 2.7 7.1e-05 29.0 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVCpnf2 PAU_03352 PAU_03391 3j9q 3j9q_A 100.0 2e-34 5.3e-39 243.5 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCpnf3 PAU_03351 PAU_03390 3j9q 3j9q_A 99.9 4e-33 1e-37 241.7 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCpnf4 PAU_03350 PAU_03389 3j9q 3j9q_A 99.8 6.5e-26 1.7e-30 195.0 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCpnf5 PAU_03349 PAU_03388 3eaa 3eaa_A 92.7 0.017 4.4e-07 40.3 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVCpnf6 PAU_03348 PAU_03387 4aaa 4aaa_A 78.2 0.68 1.8e-05 28.3 >4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A* No DOI found.
PVCpnf7 PAU_03347 PAU_03386 2v6x 2v6x_B 36.8 14 0.00036 26.4 >2v6x_B DOA4-independent degradation protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae} 10.1038/nature06171
PVCpnf8 PAU_03346 PAU_03385 4uhv 4uhv_A 99.9 8.2e-29 2.1e-33 236.9 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVCpnf9 PAU_03345 PAU_03384 2ia7 2ia7_A 99.7 1e-21 2.6e-26 130.8 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCpnf10 PAU_03344 PAU_03383 1ukf 1ukf_A 82.0 0.4 1.1e-05 36.7 >1ukf_A Avirulence protein AVRPPH3; AVRPPHB, hypersensitive response, hydrolase; 1.35A {Pseudomonas syringae PV} SCOP: d.3.1.10 10.1073/pnas.2036536100
PVCpnf11 PAU_03343 PAU_03382 3h2t 3h2t_A 97.4 4.4e-07 1.2e-11 89.7 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCpnf12 PAU_03342 PAU_03381 2ex2 2ex2_A 39.3 12.0 0.00031 38.0 >2ex2_A Penicillin-binding protein 4; cephem, penem, D-Ala alanine-carboxypeptidase, D-alanyl-D-alanine-endopeptidase, hydrolase; 1.55A {Escherichia coli} SCOP: e.3.1.3 PDB: 2ex6_A* 2ex8_A* 2ex9_A* 2exa_A* 2exb_A* 10.1021/bi051533t
PVCpnf13 PAU_03341 PAU_03380 3izo 3izo_F 98.1 2.8e-09 7.3e-14 107.6 >3izo_F Fiber; pentameric penton base, trimeri viral protein; 3.60A {Human adenovirus 5} 10.1016/j.jmb.2010.11.043
PVCpnf14 PAU_03340 PAU_03379 3c9p 3c9p_A 32.4 18 0.00047 32.2 >3c9p_A Uncharacterized protein SP1917; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 1.96A {Streptococcus pneumoniae} No DOI found.
PVCpnf15 PAU_03339 PAU_03378 5g4f 5g4f_A 99.9 2.1e-26 5.5e-31 222.3 >5g4f_A VCP-like ATPase; hydrolase, VAT, proteasome, protein dynamics, unfoldase, conformations, AAA ATPase; 7.00A {Thermoplasma acidophilum} PDB: 5g4g_A 1cz4_A 1cz5_A 10.1073/pnas.1603980113
PVCpnf16 PAU_03338 PAU_03377 5jbr 5jbr_A 29.2 22 0.00058 23.9 >5jbr_A Uncharacterized protein BCAV_2135; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 1.65A {Beutenbergia cavernae} No DOI found.
PVCpnf17 PAU_03337 PAU_03376 1yrt 1yrt_A 98.5 9e-11 2.4e-15 108.6 >1yrt_A Bifunctional hemolysin-adenylate cyclase; CYAA, layse, toxin; 2.10A {Bordetella pertussis} PDB: 1yru_A 1zot_A* 2col_A 10.1038/sj.emboj.7600800
PVCpnf18 PAU_03336 PAU_03375 5g4d 5g4d_A 60.4 3.2 8.5e-05 23.4 >5g4d_A CAS2, crispr-associated endoribonuclease CAS2; immune system, cripsr-CAS complex, adaptation; 1.70A {Thermococcus onnurineus} PDB: 4tno_A 2i0x_A 10.1002/pro.2981
PVCpnf19 PAU_03334 PAU_03374 3gqe 3gqe_A 62.7 2.7 7.2e-05 25.6 >3gqe_A Non-structural protein 3; macro domain, X domain, venezuelan equine encephalitis virus alphavirus; HET: BCN; 2.30A {Venezuelan equine encephalitis virus} PDB: 3gqo_A* 10.1128/JVI.00189-09
PVCpnf20 PAU_03333 PAU_03373 3fxq 3fxq_A 99.7 2.4e-21 6.3e-26 122.5 >3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A* 10.1111/j.1365-2958.2010.07043.x
PVCpnf21 PAU_03332 PAU_03372 1hq0 1hq0_A 100.0 1.1e-64 2.8e-69 458.4 >1hq0_A CNF1, cytotoxic necrotizing factor 1; beta sandwich, RHO deamidase, RHO transglutaminase, toxin; 1.83A {Escherichia coli} SCOP: d.194.1.1 PDB: 1hzg_A 10.1038/89610
PVCpnf22 PAU_03331 PAU_03371 2oyz 2oyz_A 62.7 2.8 7.2e-05 24.7 >2oyz_A UPF0345 protein VPA0057; unknown function, structural genomi 2, protein structure initiative, midwest center for structu genomics, MCSG; 1.71A {Vibrio parahaemolyticus} SCOP: b.82.1.22 No DOI found.
PVCpnf23 PAU_03330 PAU_03370 3hdf 3hdf_A 100.0 1.6e-41 4.1e-46 227.5 >3hdf_A Lysozyme; antimicrobial, bacteriolytic enzyme, glycosid hydrolase, late protein; 1.70A {Enterobacteria phage P21} 10.1038/nsmb.1681
PVCpnf24 PAU_03329 PAU_03369 3vp9 3vp9_A 61.6 3 7.8e-05 30.4 >3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A 10.1074/jbc.M112.369652
PVCcif1 PAU_01993 PAU_01961 3jqo 3jqo_B 41.5 10 0.00027 27.0 >3jqo_B TRAO protein; helical outer membrane TM, outer membrane protein complex, T protein; HET: LDA; 2.60A {Escherichia coli} PDB: 3zbi_B 2ofq_A 10.1038/nature08588
PVCcif2 PAU_01994 PAU_01962 3j9q 3j9q_A 99.9 4.5e-33 1.2e-37 236.1 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCcif3 PAU_01995 PAU_01963 3j9q 3j9q_A 99.9 1.3e-30 3.4e-35 228.9 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCcif4 PAU_01996 PAU_01964 3j9q 3j9q_A 99.9 9.7e-27 2.5e-31 199.5 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCcif5 PAU_01997 PAU_01965 4tv4 4tv4_A 57.2 4.0 0.0001 29.5 >4tv4_A Uncharacterized protein; unknown function, ssgcid, virulence, structural genomics; 2.10A {Burkholderia pseudomallei} No DOI found.
PVCcif6 PAU_01998 PAU_01966 3nyi 3nyi_A 42.8 9.7 0.00025 24.7 >3nyi_A FAT acid-binding protein; stearic acid, DEGV family protein, structural genomics, PSI- protein structure initiative; HET: STE; 1.90A {Eubacterium ventriosum} No DOI found.
PVCcif7 PAU_01999 PAU_01967 5a3a 5a3a_A 47.5 7.3 0.00019 30.9 >5a3a_A SIR2 family protein; transferase, P-ribosyltransferase, metalloprotein, NAD-depen lipoylation, regulatory enzyme, rossmann fold; 1.54A {Streptococcus pyogenes} PDB: 5a3b_A* 5a3c_A* 10.1016/j.molcel.2015.06.013
PVCcif8 PAU_02000 PAU_01968 4uhv 4uhv_A 99.9 1e-27 2.6e-32 229.1 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVCcif9 PAU_02001 PAU_01969 2ia7 2ia7_A 99.7 8.1e-22 2.1e-26 132.1 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCcif10 PAU_02002 PAU_01970 3dfz 3dfz_A 35.9 15 0.00038 26.2 >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} 10.1042/BJ20080785
PVCcif11 PAU_02003 PAU_01971 3h2t 3h2t_A 96.4 5.2e-05 1.4e-09 76.8 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCcif12 PAU_02004 PAU_01972 4orl 4orl_A 63.3 2.6 6.9e-05 37.5 >4orl_A Uncharacterized protein; PF16022 family, DUF4783, structural genomics, joint center F structural genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Bacteroides ovatus} No DOI found.
PVCcif13 PAU_02005 PAU_01973 1ocy 1ocy_A 98.4 2.3e-10 6e-15 91.7 >1ocy_A Bacteriophage T4 short tail fibre; structural protein, fibrous protein, LIPO-polysaccharide binding, bacteriophage structural protein; HET: CIT; 1.5A {Bacteriophage T4} SCOP: d.231.1.1 10.1016/S0022-2836(03)00755-1
PVCcif14 PAU_02006 PAU_01974 2d8r 2d8r_A 42.5 9.8 0.00026 29.1 >2d8r_A THAP domain-containing protein 2; NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.16 No DOI found.
PVCcif15 PAU_02007 PAU_01975 5e7p 5e7p_A 99.8 4.8e-26 1.3e-30 230.3 >5e7p_A Cell division control protein CDC48; AAA ATPase, M. smegmatic, RECA, hydrolase; HET: ADP PG4 PGE; 2.51A {Mycobacterium smegmatis} 10.1128/JB.00905-15
PVCcif16 PAU_02008 PAU_01976 4adx 4adx_G 38.8 12 0.00032 27.2 >4adx_G RPLX; ribosome, protein synthesis; 6.60A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2jxt_A 10.1016/j.jmb.2012.01.018
PVCcif17 PAU_02009 PAU_01977 4fbj 4fbj_A 100.0 4.2e-96 1e-100 648.7 >4fbj_A CIF, hypothetical protein; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Photorhabdus luminescens subsp} PDB: 3gqj_A No DOI found.
PVCcif18 PAU_02010 PAU_01978 2b9i 2b9i_C 28.4 24 0.00061 22.2 >2b9i_C MSG5, tyrosine-protein phosphatase MSG5; transferase; HET: ADP; 2.50A {Saccharomyces cerevisiae} 10.1016/j.molcel.2005.10.030
PVCcif19 PAU_02011 PAU_01979 2hxj 2hxj_A 61.1 3.1 8.1e-05 34.1 >2hxj_A Hypothetical protein; APC83807, structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.21A {Neisseria meningitidis MC58} SCOP: a.136.1.1 PDB: 3mw6_A Key error. ID likely deprecated.
PVCcif20 PAU_02012 PAU_01980 3gkn 3gkn_A 37.8 13 0.00034 22.7 >3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A 10.1016/j.jmb.2009.05.030
PVClumT1 PAU_02247 PAU_02206 3eaa 3eaa_A 61.3 3.0 7.9e-05 28.7 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVClumT2 PAU_02246 PAU_02205 3j9q 3j9q_A 99.9 8.1e-31 2.1e-35 228.3 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClumT3 PAU_02245 PAU_02204 3j9q 3j9q_A 99.9 2.8e-28 7.4e-33 208.3 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClumT4 PAU_02244 PAU_02203 3eaa 3eaa_A 52.9 5.3 0.00014 27.7 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVClumT5 PAU_02243 PAU_02202 1use 1use_A 67.8 1.9 4.9e-05 23.9 >1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A 10.1073/pnas.0403069101
PVClumT6 PAU_02242 PAU_02201 4v2x 4v2x_A 32.7 18.0 0.00047 31.3 >4v2x_A Endo-beta-1,4-glucanase (cellulase B); hydrolase, TRI-modular; 1.64A {Bacillus halodurans} 10.1074/jbc.M115.637827
PVClumT7 PAU_02241 PAU_02200 2p5z 2p5z_X 99.7 5.6e-22 1.5e-26 179.9 >2p5z_X Type VI secretion system component; structural genomics, unknown function, PSI-2, protein struct initiative; 2.60A {Escherichia coli O6} SCOP: b.40.8.1 b.106.1.1 b.106.1.1 10.1073/pnas.0813360106
PVClumT8 PAU_02240 PAU_02199 2ia7 2ia7_A 99.7 3.7e-22 9.6e-27 133.8 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVClumT9 afp10 PAU_02198 4jiv 4jiv_D 69.6 1.6 4.2e-05 27.5 >4jiv_D VCA0105, putative uncharacterized protein; PAAR-repeat motif, membrane piercing, type VI secretion SYST vibrio cholerae VGRG2; HET: PLM STE ELA; 1.90A {Vibrio cholerae o1 biovar eltor} 10.1038/nature12453
PVClumT10 afp11 PAU_02197 3h2t 3h2t_A 96.8 9.6e-06 2.5e-10 78.8 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVClumT11 PAU_02237 PAU_02196 1yo5 1yo5_C 39.5 12 0.00031 32.1 >1yo5_C SAM pointed domain containing ETS transcription factor; protein-DNA complex, double helix, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.4.5.21 10.1021/bi047352t
PVClumT12 PAU_02236 PAU_02195 1v1h 1v1h_A 97.7 9.4e-08 2.4e-12 71.3 >1v1h_A Fibritin, fiber protein; chimera; 1.9A {Human adenovirus type 2} SCOP: b.83.1.1 h.1.17.1 PDB: 1v1i_A 10.1016/j.jmb.2004.07.008
PVClumT13 PAU_02235 PAU_02194 1osn 1osn_A 41.0 11 0.00028 36.0 >1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1 10.1074/jbc.M302025200
PVClumT14 PAU_02234 PAU_02193 4uid 4uid_A 63.3 2.6 6.9e-05 31.3 >4uid_A S-layer SBSC, surface layer protein; sugar binding protein, G. stearothermophilus; 2.80A {Geobacillus stearothermophilus} No DOI found.
PVClumT15 PAU_02233 PAU_02192 1tdp 1tdp_A 22.1 37.0 0.00096 27.2 >1tdp_A Carnobacteriocin B2 immunity protein; four-helix bundle, antimicrobial protein; NMR {Carnobacterium maltaromaticum} SCOP: a.29.8.1 10.1021/bi048854+
PVClumT16 PAU_02232 PAU_02191 5ftj 5ftj_A 99.8 2.9e-25 7.6e-30 220.3 >5ftj_A Transitional endoplasmic reticulum ATPase; hydrolase, single-particle, AAA ATPase; HET: ADP OJA; 2.30A {Homo sapiens} PDB: 3cf1_A* 3cf3_A* 3cf2_A* 5ftk_A* 5ftl_A* 5ftm_A* 5ftn_A* 1r7r_A* 5c19_A 5c1b_A* 5c18_A* 3cf0_A* 10.1126/science.aad7974
PVClumT17 PAU_02231 PAU_02190 3lfh 3lfh_A 39.7 12 0.0003 28.9 >3lfh_A Manxa, phosphotransferase system, mannose/fructose-speci component IIA; PTS; 1.80A {Thermoanaerobacter tengcongensis} No DOI found.
PVClumT18 PAU_02230 PAU_02189 4mix 4mix_A 100.0 6e-57 1.6e-61 486.1 >4mix_A Putative insecticidal toxin; tyrosine glycosylation, UDP-GLCNAC, nucleotide-binding domai rossmann-like, glycosyltransferase; HET: MSE UD1; 1.80A {Photorhabdus asymbiotica subsp} 10.1038/nsmb.2688
PVClopT1 PAU_02112 PAU_02074 3eaa 3eaa_A 83.5 0.32 8.3e-06 33.5 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVClopT2 PAU_02111 PAU_02073 3j9q 3j9q_A 100.0 2.8e-35 7.3e-40 248.2 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClopT3 PAU_02110 PAU_02072 3j9q 3j9q_A 99.9 3.9e-31 1e-35 226.1 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClopT4 PAU_02109 PAU_02071 4tv4 4tv4_A 70.8 1.5 3.8e-05 31.8 >4tv4_A Uncharacterized protein; unknown function, ssgcid, virulence, structural genomics; 2.10A {Burkholderia pseudomallei} No DOI found.
PVClopT5 PAU_02108 PAU_02070 4hf1 4hf1_A 81.1 0.47 1.2e-05 28.7 >4hf1_A HTH-type transcriptional regulator ISCR; WHTH, protein-DNA complex, iron-sulfur cluster, winged helix helix, transcriptional regulator, redox sensor; HET: DNA; 2.22A {Escherichia coli} PDB: 4hf2_A* 4chu_A 10.1038/nsmb.2568
PVClopT6 PAU_02107 PAU_02069 2vol 2vol_A 28.5 23 0.00061 22.9 >2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A Key error. ID likely deprecated.
PVClopT7 PAU_02106 PAU_02068 4uhv 4uhv_A 99.9 8.6e-30 2.2e-34 243.3 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVClopT8 PAU_02105 PAU_02067 2ia7 2ia7_A 99.8 2.3e-23 6e-28 138.6 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVClopT9 PAU_02104 PAU_02066 3ojo 3ojo_A 31.3 19 0.00051 28.0 >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* 10.1074/jbc.M110.216002
PVClopT10 PAU_02103 PAU_02065 3h2t 3h2t_A 97.1 2.3e-06 6.1e-11 89.7 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVClopT11 PAU_02102 PAU_02064 1pqx 1pqx_A 37.4 13 0.00035 31.4 >1pqx_A Conserved hypothetical protein; ZR18,structure, autostructure,spins,autoassign, northeast structural genomics consortium; NMR {Staphylococcus aureus subsp} SCOP: d.267.1.1 PDB: 2ffm_A 2m6q_A 2m8w_A No DOI found.
PVClopT12 PAU_02101 PAU_02063 4yap 4yap_A 31.1 20 0.00052 29.1 >4yap_A Glutathione S-transferase homolog; GSH-lyase GSH-dependent; 1.11A {Sphingobium SP} PDB: 4g10_A 4yav_A* 10.1074/jbc.M115.700427
PVClopT13 PAU_02100 PAU_02062 5e7p 5e7p_A 99.9 2e-26 5.3e-31 232.9 >5e7p_A Cell division control protein CDC48; AAA ATPase, M. smegmatic, RECA, hydrolase; HET: ADP PG4 PGE; 2.51A {Mycobacterium smegmatis} 10.1128/JB.00905-15
PVClopT14 PAU_02099 PAU_02061 3rbt 3rbt_A 19.3 46.0 0.0012 25.1 >3rbt_A Glutathione transferase O1; glutathione S-transferase omega3; 2.20A {Bombyx mori} 10.1016/j.jmb.2011.07.019
PVClopT15 PAU_02098 PAU_02060 2ebf 2ebf_X 100.0 5.6e-90 1.5e-94 707.6 >2ebf_X Dermonecrotic toxin; pasteurella multocida toxin, trojan horse-like fold; HET: TRE; 1.90A {Pasteurella multocida} SCOP: a.296.1.1 c.150.1.2 d.3.1.17 PDB: 2ec5_A 2ebh_X* 10.1073/pnas.0608197104
PVClopT16 PAU_02097 PAU_02059 2jsp 2jsp_A 15.3 66.0 0.0017 24.7 >2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens} 10.1073/pnas.0706659104
PVClopT17 PAU_02096 PAU_02058 1ukf 1ukf_A 99.9 1.4e-26 3.8e-31 195.3 >1ukf_A Avirulence protein AVRPPH3; AVRPPHB, hypersensitive response, hydrolase; 1.35A {Pseudomonas syringae PV} SCOP: d.3.1.10 10.1073/pnas.2036536100
PVClopT18 PAU_02095 PAU_02057 4igl 4igl_B 100.0 8.8e-59 2.3e-63 451.0 >4igl_B YENC2; beta-propeller, RHS, toxin complex, toxin transporter/chaper secreted, toxin; 2.49A {Yersinia} 10.1038/nature12465
PVCunit1_1 afp1 PAU_02775 3eaa 3eaa_A 73.0 1.2 3.1e-05 30.8 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVCunit1_2 afp2 PAU_02776 3j9q 3j9q_A 100.0 3.7e-36 9.7e-41 254.4 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit1_3 afp3 PAU_02777 3j9q 3j9q_A 100.0 2.6e-35 6.9e-40 257.2 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit1_4 afp4 PAU_02778 3j9q 3j9q_A 99.9 3.6e-29 9.5e-34 214.6 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit1_5 afp5 PAU_02779 4tv4 4tv4_A 63.6 2.6 6.7e-05 30.5 >4tv4_A Uncharacterized protein; unknown function, ssgcid, virulence, structural genomics; 2.10A {Burkholderia pseudomallei} No DOI found.
PVCunit1_6 afp7 PAU_02780 4e71 4e71_A 48.8 6.8 0.00018 24.0 >4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens} No DOI found.
PVCunit1_7 afp7 PAU_02781 5a3a 5a3a_A 45.8 8.1 0.00021 30.6 >5a3a_A SIR2 family protein; transferase, P-ribosyltransferase, metalloprotein, NAD-depen lipoylation, regulatory enzyme, rossmann fold; 1.54A {Streptococcus pyogenes} PDB: 5a3b_A* 5a3c_A* 10.1016/j.molcel.2015.06.013
PVCunit1_8 PAU_02796 PAU_02782 4uhv 4uhv_A 99.9 1.4e-30 3.7e-35 248.7 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVCunit1_9 afp9 PAU_02783 2ia7 2ia7_A 99.7 5.4e-22 1.4e-26 133.1 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCunit1_10 afp10 PAU_02784 1pml 1pml_A 37.7 13 0.00034 21.4 >1pml_A Tissue plasminogen activator kringle 2; hydrolase(serine protease); 2.38A {Homo sapiens} SCOP: g.14.1.1 PDB: 1pk2_A* 1tpk_A 10.1002/pro.5560030605
PVCunit1_11 afp11 PAU_02785 3h2t 3h2t_A 96.7 1.5e-05 3.9e-10 80.6 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCunit1_12 afp12 PAU_02786 1pqx 1pqx_A 18.2 51.0 0.0013 28.2 >1pqx_A Conserved hypothetical protein; ZR18,structure, autostructure,spins,autoassign, northeast structural genomics consortium; NMR {Staphylococcus aureus subsp} SCOP: d.267.1.1 PDB: 2ffm_A 2m6q_A 2m8w_A No DOI found.
PVCunit1_13 PAU_02801 PAU_02787 1ocy 1ocy_A 98.3 6.7e-10 1.8e-14 92.9 >1ocy_A Bacteriophage T4 short tail fibre; structural protein, fibrous protein, LIPO-polysaccharide binding, bacteriophage structural protein; HET: CIT; 1.5A {Bacteriophage T4} SCOP: d.231.1.1 10.1016/S0022-2836(03)00755-1
PVCunit1_14 orf25 PAU_02788 3dzd 3dzd_A 24.8 30 0.00078 28.5 >3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A 10.1016/j.jmb.2008.10.024
PVCunit1_15 PAU_02803 PAU_02789 5e7p 5e7p_A 99.9 4.9e-28 1.3e-32 244.9 >5e7p_A Cell division control protein CDC48; AAA ATPase, M. smegmatic, RECA, hydrolase; HET: ADP PG4 PGE; 2.51A {Mycobacterium smegmatis} 10.1128/JB.00905-15
PVCunit1_16 PAU_02804 PAU_02790 4uhq 4uhq_A 35.4 15 0.00039 29.3 >4uhq_A Large component of pyocin AP41; hydrolase, bacteriocin, DNAse; HET: CIT; 1.50A {Pseudomonas aeruginosa} PDB: 4uhp_A* 10.1016/j.jmb.2015.07.014
PVCunit1_17 hrpN PAU_02791 1yqf 1yqf_A 60.7 3.2 8.3e-05 33.9 >1yqf_A Hypothetical protein LMAJ011689; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.30A {Leishmania major} SCOP: d.25.1.1 No DOI found.
PVCunit1_18 PAU_02806 PAU_02792 1t6u 1t6u_A 24.5 31 0.0008 28.1 >1t6u_A Superoxide dismutase [NI]; nickel, 4-helix bundle, hexamer, nisod, SOD, high resolution, oxidoreductase; 1.30A {Streptomyces coelicolor} SCOP: a.24.22.1 PDB: 1t6q_A 1t6i_A 3g4z_A 3g4x_A 4ncq_A 3g50_A 1q0g_A 1q0f_A 1q0d_A 1q0k_A 1q0m_A 10.1021/bi0496081
PVCunit1_19 PAU_02807 PAU_02793 3kx6 3kx6_A 19.7 45 0.0012 31.3 >3kx6_A Fructose-bisphosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, glycolysis, lyase, STRU genomics; HET: CIT; 2.10A {Babesia bovis} No DOI found.
PVCunit1_20 PAU_02808 PAU_02794 1vyy 1vyy_A 99.9 8.9e-33 2.3e-37 218.9 >1vyy_A Lectin; sugar-binding protein, D-mannose, plant pathogen; HET: BMA MAN; 1.00A {Ralstonia solanacearum} PDB: 1uqx_A* 2chh_A* Key error. ID likely deprecated.
PVCpnf1 PAK_3544 PAK_03203 3eaa 3eaa_A 78.5 0.66 1.7e-05 32.1 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVCpnf2 PAK_3543 PAK_03202 3j9q 3j9q_A 100.0 3e-34 7.9e-39 242.5 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCpnf3 PAK_3542 PAK_03201 3j9q 3j9q_A 99.9 8.7e-33 2.3e-37 239.9 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCpnf4 PAK_3541 PAK_03200 3j9q 3j9q_A 99.9 7.1e-27 1.8e-31 200.5 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCpnf5 PAK_3540 PAK_03199 3eaa 3eaa_A 92.6 0.018 4.7e-07 40.1 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVCpnf6 PAK_3539 PAK_03198 4aaa 4aaa_A 78.2 0.68 1.8e-05 28.3 >4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A* No DOI found.
PVCpnf7 PAK_3538 PAK_03197 1pp0 1pp0_A 18.8 48.0 0.0013 26.7 >1pp0_A Volvatoxin A2; ingot crystal form; 1.42A {Volvariella volvacea} SCOP: d.103.1.1 PDB: 1pp6_A 1vgf_A 1vcy_A 10.1016/j.jmb.2004.08.045
PVCpnf8 PAK_3537 PAK_03196 4uhv 4uhv_A 99.9 9.9e-29 2.6e-33 236.3 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVCpnf9 PAK_3536 PAK_03195 2ia7 2ia7_A 99.7 1.5e-21 3.9e-26 129.9 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCpnf10 PAK_3535 PAK_03194 1ukf 1ukf_A 77.5 0.75 1.9e-05 35.1 >1ukf_A Avirulence protein AVRPPH3; AVRPPHB, hypersensitive response, hydrolase; 1.35A {Pseudomonas syringae PV} SCOP: d.3.1.10 10.1073/pnas.2036536100
PVCpnf11 PAK_3534 PAK_03193 3h2t 3h2t_A 96.8 8.4e-06 2.2e-10 80.7 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCpnf12 PAK_3533 PAK_03192 2jpf 2jpf_A 32.7 18.0 0.00046 34.1 >2jpf_A Hypothetical protein; all alpha helical protein, type III secretion effector protein, structural genomics; NMR {Bordetella parapertussis} No DOI found.
PVCpnf13 PAK_3532 PAK_03191 2xgf 2xgf_A 97.8 4e-08 1.1e-12 86.2 >2xgf_A Long tail fiber protein P37; viral protein; 2.20A {Enterobacteria phage T4} 10.1073/pnas.1011218107
PVCpnf14 PAK_3531 PAK_03190 3fx7 3fx7_A 45.3 8.3 0.00022 28.7 >3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} PDB: 2gts_A 10.1093/jb/mvp098
PVCpnf15 PAK_3530 PAK_03189 5g4f 5g4f_A 99.9 7e-27 1.8e-31 225.6 >5g4f_A VCP-like ATPase; hydrolase, VAT, proteasome, protein dynamics, unfoldase, conformations, AAA ATPase; 7.00A {Thermoplasma acidophilum} PDB: 5g4g_A 1cz4_A 1cz5_A 10.1073/pnas.1603980113
PVCpnf16 PAK_3529 PAK_03188 3t5s 3t5s_A 61.4 3 7.9e-05 30.2 >3t5s_A Gilaa.00834.A, macrophage migration inhibitory factor; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Giardia lamblia} 10.1007/s10969-013-9155-9
PVCpnf17 PAK_3527 PAK_03187 4ae8 4ae8_A 59.8 3.4 8.8e-05 27.4 >4ae8_A Thioesterase superfamily member 4; hydrolase, hotdog-fold; 1.59A {Homo sapiens} PDB: 4gah_A* 10.1128/MCB.00312-12
PVCpnf18 PAK_3526 PAK_03186 3fxq 3fxq_A 99.7 2.7e-21 7e-26 122.2 >3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A* 10.1111/j.1365-2958.2010.07043.x
PVCpnf19 PAK_3525 PAK_03185 4mix 4mix_A 100.0 5e-35 1.3e-39 251.4 >4mix_A Putative insecticidal toxin; tyrosine glycosylation, UDP-GLCNAC, nucleotide-binding domai rossmann-like, glycosyltransferase; HET: MSE UD1; 1.80A {Photorhabdus asymbiotica subsp} 10.1038/nsmb.2688
PVCpnf20 PAK_3524 PAK_03184 1xju 1xju_A 99.4 4.1e-17 1.1e-21 98.8 >1xju_A Lysozyme; secreted inactive conformation, hydrolase; 1.07A {Enterobacteria phage P1} SCOP: d.2.1.3 10.1126/science.1105143
PVCpnf21 PAK_3523 PAK_03183 3hdf 3hdf_A 99.7 1.5e-22 3.8e-27 125.9 >3hdf_A Lysozyme; antimicrobial, bacteriolytic enzyme, glycosid hydrolase, late protein; 1.70A {Enterobacteria phage P21} 10.1038/nsmb.1681
PVCpnf22 PAK_3522 PAK_03182 1l8d 1l8d_A 69.1 1.7 4.4e-05 28.9 >1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1 10.1038/nature00922
PVCpnf23 PAK_3521 PAK_03181 3hdf 3hdf_A 100.0 1.8e-42 4.7e-47 232.0 >3hdf_A Lysozyme; antimicrobial, bacteriolytic enzyme, glycosid hydrolase, late protein; 1.70A {Enterobacteria phage P21} 10.1038/nsmb.1681
PVCcif1 PAK_1969 PAK_01787 3jqo 3jqo_B 40.9 11 0.00028 26.9 >3jqo_B TRAO protein; helical outer membrane TM, outer membrane protein complex, T protein; HET: LDA; 2.60A {Escherichia coli} PDB: 3zbi_B 2ofq_A 10.1038/nature08588
PVCcif2 PAK_1970 PAK_01788 3j9q 3j9q_A 100.0 3.7e-34 9.7e-39 242.8 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCcif3 PAK_1971 PAK_01789 3j9q 3j9q_A 99.9 1.8e-31 4.8e-36 234.4 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCcif4 PAK_1972 PAK_01790 3j9q 3j9q_A 99.9 3.9e-27 1e-31 202.0 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCcif5 PAK_1973 PAK_01791 4tv4 4tv4_A 40.1 11 0.0003 27.1 >4tv4_A Uncharacterized protein; unknown function, ssgcid, virulence, structural genomics; 2.10A {Burkholderia pseudomallei} No DOI found.
PVCcif6 PAK_1974 PAK_01792 3rjr 3rjr_A 53.8 5 0.00013 26.1 >3rjr_A Transforming growth factor beta-1; TGF beta, activation, integrin, cytokine; HET: NAG; 3.05A {Sus scrofa} 10.1038/nature10152
PVCcif7 PAK_1975 PAK_01793 5a3a 5a3a_A 50.8 6 0.00016 31.4 >5a3a_A SIR2 family protein; transferase, P-ribosyltransferase, metalloprotein, NAD-depen lipoylation, regulatory enzyme, rossmann fold; 1.54A {Streptococcus pyogenes} PDB: 5a3b_A* 5a3c_A* 10.1016/j.molcel.2015.06.013
PVCcif8 PAK_1976 PAK_01794 4uhv 4uhv_A 99.9 4.6e-28 1.2e-32 231.4 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVCcif9 PAK_1977 PAK_01795 2ia7 2ia7_A 99.7 9.7e-22 2.5e-26 131.7 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCcif10 PAK_1978 PAK_01796 2k4r 2k4r_A 37.5 13 0.00035 21.5 >2k4r_A Neurotrypsin; kringle domain, disulfide-rich protein fold, serine endopeptidase, hydrolase, extracellular proteolysis; NMR {Rattus norvegicus} PDB: 2k51_A 10.1021/bi800555z
PVCcif11 PAK_1979 PAK_01797 3h2t 3h2t_A 96.1 0.00012 3.2e-09 74.0 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCcif12 PAK_1980 PAK_01798 5efx 5efx_A 68.5 1.8 4.6e-05 36.3 >5efx_A RHO guanine nucleotide exchange factor 2; RHO GTPase, activity, signaling protein; 2.45A {Homo sapiens} 10.1016/j.bbrc.2016.01.150
PVCcif13 PAK_1981 PAK_01799 1ocy 1ocy_A 98.3 5.2e-10 1.4e-14 89.6 >1ocy_A Bacteriophage T4 short tail fibre; structural protein, fibrous protein, LIPO-polysaccharide binding, bacteriophage structural protein; HET: CIT; 1.5A {Bacteriophage T4} SCOP: d.231.1.1 10.1016/S0022-2836(03)00755-1
PVCcif14 PAK_1982 PAK_01800 1tuz 1tuz_A 21.4 39.0 0.001 26.1 >1tuz_A Diacylglycerol kinase alpha; transferase, HR532, nesgc, structural genomics, PSI, protein structure initiative; NMR {Homo sapiens} SCOP: a.39.1.7 No DOI found.
PVCcif15 PAK_1983 PAK_01801 5e7p 5e7p_A 99.8 5.5e-25 1.4e-29 222.7 >5e7p_A Cell division control protein CDC48; AAA ATPase, M. smegmatic, RECA, hydrolase; HET: ADP PG4 PGE; 2.51A {Mycobacterium smegmatis} 10.1128/JB.00905-15
PVCcif16 PAK_1984 PAK_01802 3fxd 3fxd_B 34.1 16 0.00043 28.1 >3fxd_B Protein ICMR; helix bundle, helix-turn-helix, unknown function; 2.10A {Legionella pneumophila subsp} PDB: 3fxe_B 10.1016/j.str.2009.02.011
PVCcif17 PAK_1985 PAK_01803 4fbj 4fbj_A 100.0 2.4e-91 6.3e-96 618.6 >4fbj_A CIF, hypothetical protein; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Photorhabdus luminescens subsp} PDB: 3gqj_A No DOI found.
PVCcif18 PAK_1986 PAK_01804 3r2n 3r2n_A 31.0 20 0.00052 26.9 >3r2n_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.30A {Mycobacterium leprae} 10.1016/j.tube.2014.12.003
PVCcif19 PAK_1987 PAK_01805 5ewy 5ewy_A 97.3 6.2e-07 1.6e-11 74.4 >5ewy_A Putative ADP-ribosyltransferase scabin; inhibitor, transferase-transferase inhibitor CO; HET: 5TQ; 1.40A {Streptomyces scabiei 87} PDB: 5ewk_A* 10.1074/jbc.M115.707653
PVCcif20 PAK_1988 PAK_01806 2hxj 2hxj_A 74.1 1.1 2.8e-05 35.9 >2hxj_A Hypothetical protein; APC83807, structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.21A {Neisseria meningitidis MC58} SCOP: a.136.1.1 PDB: 3mw6_A Key error. ID likely deprecated.
PVClumt1 PAK_2216 PAK_02014 3eaa 3eaa_A 69.3 1.7 4.3e-05 30.1 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVClumt2 PAK_2215 PAK_02013 3j9q 3j9q_A 99.6 1.4e-19 3.6e-24 154.2 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClumt3 PAK_2214 PAK_02012 3j9q 3j9q_A 98.2 1.5e-09 3.9e-14 75.6 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClumt4 PAK_2213 PAK_02011 3j9q 3j9q_A 99.9 7.2e-29 1.9e-33 212.0 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClumt5 PAK_2212 PAK_02010 3eaa 3eaa_A 72.5 1.2 3.3e-05 30.9 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVClumt6 PAK_2211 PAK_02009 1use 1use_A 68.7 1.7 4.5e-05 24.0 >1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A 10.1073/pnas.0403069101
PVClumt7 PAK_2210 PAK_02008 4v2x 4v2x_A 33.0 17.0 0.00046 31.3 >4v2x_A Endo-beta-1,4-glucanase (cellulase B); hydrolase, TRI-modular; 1.64A {Bacillus halodurans} 10.1074/jbc.M115.637827
PVClumt8 PAK_2209 PAK_02007 2p5z 2p5z_X 99.7 1.5e-21 3.8e-26 177.2 >2p5z_X Type VI secretion system component; structural genomics, unknown function, PSI-2, protein struct initiative; 2.60A {Escherichia coli O6} SCOP: b.40.8.1 b.106.1.1 b.106.1.1 10.1073/pnas.0813360106
PVClumt9 PAK_2208 PAK_02006 2ia7 2ia7_A 99.7 6.7e-22 1.7e-26 132.6 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVClumt10 PAK_2207 PAK_02005 3ull 3ull_A 58.1 3.8 9.8e-05 26.7 >3ull_A DNA binding protein; DNA replication, mitochondrion, transit peptide; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 PDB: 1s3o_A* 2dud_A 10.1038/nsb0297-153
PVClumt11 PAK_2206 PAK_02004 2kcp 2kcp_A 37.9 13 0.00034 29.9 >2kcp_A 30S ribosomal protein S8E; RPS8E, beta, NESG, ribonucleoprotein, structural genomics, PSI-2; NMR {Methanothermobacter thermautotrophicusstr} PDB: 2kcy_A No DOI found.
PVClumt12 PAK_2205 PAK_02003 3h2t 3h2t_A 96.2 8.2e-05 2.1e-09 63.5 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVClumt13 PAK_2204 PAK_02002 1yo5 1yo5_C 39.0 12 0.00032 32.1 >1yo5_C SAM pointed domain containing ETS transcription factor; protein-DNA complex, double helix, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.4.5.21 10.1021/bi047352t
PVClumt14 PAK_2203 PAK_02001 1v1h 1v1h_A 95.3 0.00092 2.4e-08 49.5 >1v1h_A Fibritin, fiber protein; chimera; 1.9A {Human adenovirus type 2} SCOP: b.83.1.1 h.1.17.1 PDB: 1v1i_A 10.1016/j.jmb.2004.07.008
PVClumt15 PAK_2202 PAK_02000 1osn 1osn_A 25.9 28 0.00073 33.2 >1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1 10.1074/jbc.M302025200
PVClumt16 PAK_2201 PAK_01999 4uid 4uid_A 64.8 2.4 6.2e-05 31.5 >4uid_A S-layer SBSC, surface layer protein; sugar binding protein, G. stearothermophilus; 2.80A {Geobacillus stearothermophilus} No DOI found.
PVClumt17 PAK_2200 PAK_01998 3k8p 3k8p_C 34.7 16.0 0.00041 34.1 >3k8p_C DSL1, KLLA0C02695P; intracellular trafficking, DSL1 complex, multisubunit tethering complex, snare proteins; 2.60A {Kluyveromyces lactis} 10.1016/j.cell.2009.11.002
PVClumt18 PAK_2199 PAK_01997 5ftj 5ftj_A 99.9 1.6e-26 4.2e-31 229.2 >5ftj_A Transitional endoplasmic reticulum ATPase; hydrolase, single-particle, AAA ATPase; HET: ADP OJA; 2.30A {Homo sapiens} PDB: 3cf1_A* 3cf3_A* 3cf2_A* 5ftk_A* 5ftl_A* 5ftm_A* 5ftn_A* 1r7r_A* 5c19_A 5c1b_A* 5c18_A* 3cf0_A* 10.1126/science.aad7974
PVClumt19 PAK_2198 PAK_01996 3lfh 3lfh_A 39.5 12 0.00031 28.9 >3lfh_A Manxa, phosphotransferase system, mannose/fructose-speci component IIA; PTS; 1.80A {Thermoanaerobacter tengcongensis} No DOI found.
PVClumt20 PAK_2197 PAK_01995 1wrd 1wrd_A 43.2 9.4 0.00025 32.8 >1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1 PDB: 2n2n_A 10.1016/j.febslet.2005.08.076
PVClumt21 PAK_2195 PAK_01994 4mix 4mix_A 100.0 8.9e-44 2.3e-48 348.7 >4mix_A Putative insecticidal toxin; tyrosine glycosylation, UDP-GLCNAC, nucleotide-binding domai rossmann-like, glycosyltransferase; HET: MSE UD1; 1.80A {Photorhabdus asymbiotica subsp} 10.1038/nsmb.2688
PVClopt1 PAK_2092 PAK_01896 3eaa 3eaa_A 82.2 0.39 1e-05 33.1 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVClopt2 PAK_2091 PAK_01895 3j9q 3j9q_A 100.0 2.5e-35 6.4e-40 248.6 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClopt3 PAK_2090 PAK_01894 3j9q 3j9q_A 99.9 1.8e-29 4.6e-34 215.9 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClopt4 PAK_2089 PAK_01893 3eaa 3eaa_A 64.9 2.3 6.1e-05 29.4 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVClopt5 PAK_2088 PAK_01892 2v1l 2v1l_A 26.7 26 0.00069 22.5 >2v1l_A Hypothetical protein; pathogenicity island, unknown function; 2.13A {Vibrio cholerae} 10.1002/prot.21993
PVClopt6 PAK_2087 PAK_01891 3zo0 3zo0_A 61.8 2.9 7.7e-05 27.8 >3zo0_A IG gamma-2A chain C region, A allele; immune system-ligase complex; HET: NAG BMA MAN GAL FUC; 1.99A {Mus musculus} PDB: 2rgs_A* 10.1073/pnas.0800159105
PVClopt7 PAK_2086 PAK_01890 4uhv 4uhv_A 99.9 8.4e-29 2.2e-33 236.5 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVClopt8 PAK_2085 PAK_01889 2ia7 2ia7_A 99.8 2.2e-23 5.8e-28 137.0 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVClopt9 PAK_2084 PAK_01888 3ojo 3ojo_A 69.6 1.6 4.2e-05 34.0 >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* 10.1074/jbc.M110.216002
PVClopt10 PAK_2083 PAK_01887 3h2t 3h2t_A 96.8 9.7e-06 2.5e-10 85.1 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVClopt11 PAK_2082 PAK_01886 1ip9 1ip9_A 49.1 6.6 0.00017 31.0 >1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A 10.1093/emboj/20.15.3947
PVClopt12 PAK_2081 PAK_01885 1nvp 1nvp_B 34.5 16 0.00042 26.7 >1nvp_B Transcription initiation factor IIA alpha chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: a.32.1.1 PDB: 5fur_B* 10.1016/S0022-2836(03)00887-8
PVClopt13 PAK_2080 PAK_01884 5e7p 5e7p_A 99.8 4.3e-26 1.1e-30 230.6 >5e7p_A Cell division control protein CDC48; AAA ATPase, M. smegmatic, RECA, hydrolase; HET: ADP PG4 PGE; 2.51A {Mycobacterium smegmatis} 10.1128/JB.00905-15
PVClopt14 PAK_2079 PAK_01883 4x8k 4x8k_B 31.6 19.0 0.0005 28.0 >4x8k_B RNA polymerase-binding protein RBPA, RNA polymerase sigma factor SIGA; transcription activator; HET: EDO; 2.20A {Mycobacterium tuberculosis} PDB: 2m6p_A 10.1073/pnas.1504942112
PVClopt15 PAK_2078 PAK_01882 2l1n 2l1n_A 52.8 5.3 0.00014 27.8 >2l1n_A Uncharacterized protein; DUF1823, hypothetical protein, cyanobacteria, structural GEN PSI-biology, protein structure initiative; NMR {Synechococcus elongatus} No DOI found.
PVClopt16 PAK_2077 PAK_01881 1ukf 1ukf_A 99.8 2.5e-25 6.6e-30 187.7 >1ukf_A Avirulence protein AVRPPH3; AVRPPHB, hypersensitive response, hydrolase; 1.35A {Pseudomonas syringae PV} SCOP: d.3.1.10 10.1073/pnas.2036536100
PVClopt17 PAK_2075 PAK_01880 1t3c 1t3c_A 93.5 0.0089 2.3e-07 65.9 >1t3c_A Neurotoxin type E; catalytic domain, E212Q mutant, light chain, hydrolase; 1.90A {Clostridium botulinum} SCOP: d.92.1.7 PDB: 3d3x_A 1t3a_A 1zl5_A 1zl6_A 1zn3_A 1zkw_A 1zkx_A 10.1021/bi036278w
PVCunit1_1 PAK_2876 PAK_02606 3eaa 3eaa_A 73.2 1.2 3.1e-05 30.8 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVCunit1_2 PAK_2877 PAK_02607 3j9q 3j9q_A 100.0 3.8e-34 1e-38 242.1 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit1_3 PAK_2878 PAK_02608 3j9q 3j9q_A 100.0 6.9e-34 1.8e-38 247.8 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit1_4 PAK_2879 PAK_02609 3j9q 3j9q_A 99.9 6.1e-30 1.6e-34 219.4 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit1_5 PAK_2880 PAK_02610 4tv4 4tv4_A 63.0 2.7 7e-05 30.4 >4tv4_A Uncharacterized protein; unknown function, ssgcid, virulence, structural genomics; 2.10A {Burkholderia pseudomallei} No DOI found.
PVCunit1_6 PAK_2881 PAK_02611 4yci 4yci_A 66.4 2.1 5.4e-05 26.8 >4yci_A Bone morphogenetic protein 9 growth factor domain; Pro-BMP complex, transforming growth factor-beta cytokine; HET: NAG; 3.25A {Mus musculus} PDB: 4ycg_A* 10.1073/pnas.1501303112
PVCunit1_7 PAK_2882 PAK_02612 5a3a 5a3a_A 54.5 4.8 0.00012 32.0 >5a3a_A SIR2 family protein; transferase, P-ribosyltransferase, metalloprotein, NAD-depen lipoylation, regulatory enzyme, rossmann fold; 1.54A {Streptococcus pyogenes} PDB: 5a3b_A* 5a3c_A* 10.1016/j.molcel.2015.06.013
PVCunit1_8 PAK_2883 PAK_02613 4uhv 4uhv_A 99.9 2.4e-30 6.4e-35 247.1 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVCunit1_9 PAK_2884 PAK_02614 2ia7 2ia7_A 99.7 1e-21 2.6e-26 131.7 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCunit1_10 PAK_2885 PAK_02615 1ngv 1ngv_A 43.2 9.4 0.00025 31.0 >1ngv_A Amyloid beta precursor protein-binding protein 1; signaling protein; 2.60A {Homo sapiens} PDB: 3gzn_A* 1yov_A 2nvu_A* 1r4m_A 1r4n_A* 1tt5_A 3dbh_A 3dbl_A 3dbr_A Key error. ID likely deprecated.
PVCunit1_11 PAK_2886 PAK_02616 3h2t 3h2t_A 96.6 1.9e-05 4.9e-10 79.9 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCunit1_12 PAK_2887 PAK_02617 1s5u 1s5u_A 40.5 11 0.00029 29.0 >1s5u_A Protein YBGC; structural genomics, hypothetical protein, thioesterase fold, PSI, protein structure initiative; 1.70A {Escherichia coli} SCOP: d.38.1.1 PDB: 5kl9_A* 5t07_A* 5t06_A* No DOI found.
PVCunit1_13 PAK_2888 PAK_02618 3izo 3izo_F 98.9 5.7e-13 1.5e-17 133.9 >3izo_F Fiber; pentameric penton base, trimeri viral protein; 3.60A {Human adenovirus 5} 10.1016/j.jmb.2010.11.043
PVCunit1_14 PAK_2889 PAK_02619 1ojh 1ojh_A 20.8 41.0 0.0011 26.2 >1ojh_A NBLA; degradation protein, phycobilisome degradation, protein BIND; HET: MSE; 1.80A {Anabaena SP} SCOP: a.214.1.1 10.1074/jbc.M507243200
PVCunit1_15 PAK_2890 PAK_02620 5e7p 5e7p_A 99.9 1.8e-26 4.6e-31 233.6 >5e7p_A Cell division control protein CDC48; AAA ATPase, M. smegmatic, RECA, hydrolase; HET: ADP PG4 PGE; 2.51A {Mycobacterium smegmatis} 10.1128/JB.00905-15
PVCunit1_16 PAK_2891 PAK_02621 5fvk 5fvk_C 25.4 29.0 0.00076 20.8 >5fvk_C VFA1, VPS4-associated protein 1; hydrolase, MIT domain, yeast, ATPase; 1.66A {Saccharomyces cerevisiae} PDB: 4niq_C 10.1016/j.jmb.2016.04.007
PVCunit1_17 PAK_2892 PAK_02622 1cii 1cii_A 63.2 2.7 6.9e-05 41.7 >1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1 10.1038/385461a0
PVCunit1_18 PAK_2893 PAK_02623 3mfx 3mfx_A 51.3 5.8 0.00015 23.5 >3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis} No DOI found.
PVCunit1_19 PAK_2894 PAK_02624 3fnb 3fnb_A 74.6 1.0 2.7e-05 35.5 >3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix bundle, structural genomics protein structure initiative; HET: PGE; 2.12A {Streptococcus mutans} No DOI found.
PVCunit1_20 PAK_2895 PAK_02625 1ocy 1ocy_A 97.2 1.6e-06 4.1e-11 65.1 >1ocy_A Bacteriophage T4 short tail fibre; structural protein, fibrous protein, LIPO-polysaccharide binding, bacteriophage structural protein; HET: CIT; 1.5A {Bacteriophage T4} SCOP: d.231.1.1 10.1016/S0022-2836(03)00755-1
PVCunit1_21 PAK_2896 PAK_02626 1vyy 1vyy_A 100.0 5.8e-35 1.5e-39 231.2 >1vyy_A Lectin; sugar-binding protein, D-mannose, plant pathogen; HET: BMA MAN; 1.00A {Ralstonia solanacearum} PDB: 1uqx_A* 2chh_A* Key error. ID likely deprecated.
PVCcif1 plu2531 PLT_02568 3jqo 3jqo_B 47.2 7.4 0.00019 27.7 >3jqo_B TRAO protein; helical outer membrane TM, outer membrane protein complex, T protein; HET: LDA; 2.60A {Escherichia coli} PDB: 3zbi_B 2ofq_A 10.1038/nature08588
PVCcif2 plu2530 PLT_02567 3j9q 3j9q_A 99.9 1.5e-31 4e-36 226.6 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCcif3 plu2529 PLT_02566 3j9q 3j9q_A 100.0 3.8e-36 9.8e-41 262.4 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCcif4 plu2528 PLT_02565 3j9q 3j9q_A 99.9 2.2e-28 5.7e-33 209.6 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCcif5 plu2527 PLT_02564 4tv4 4tv4_A 68.0 1.8 4.8e-05 31.3 >4tv4_A Uncharacterized protein; unknown function, ssgcid, virulence, structural genomics; 2.10A {Burkholderia pseudomallei} No DOI found.
PVCcif6 plu2526 PLT_02563 1use 1use_A 63.2 2.7 6.9e-05 23.2 >1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A 10.1073/pnas.0403069101
PVCcif7 plu2525 PLT_02562 4bs6 4bs6_A 22.6 35 0.00092 24.5 >4bs6_A Cathepsin S; hydrolase, cysteine protease, covalent ligand; HET: JG7; 1.20A {Mus musculus} PDB: 4bpv_A* 4bqv_A* 4bs5_A* 4bsq_A* 4mzo_A* 4mzs_A* 4p6e_A* 2h7j_A* 2f1g_A* 2hh5_B* 2hhn_A* 2hxz_A* 2op3_A* 1ms6_A* 2r9m_A* 2r9n_A* 2r9o_A* 3n3g_A* 3n4c_A* 4p6g_A* 3ovx_A* 2frq_A* 2fra_A* 2fq9_A* 2ft2_A* 2fud_A* 2g7y_A* 1nqc_A* 1npz_A* 2g6d_A* ... No DOI found.
PVCcif8 plu2524 PLT_02561 4uhv 4uhv_A 99.9 3.3e-27 8.6e-32 225.6 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVCcif9 plu2523 PLT_02560 2ia7 2ia7_A 99.8 5.4e-25 1.4e-29 146.2 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCcif10 plu2522 PLT_02559 4jiw 4jiw_D 77.4 0.75 2e-05 28.8 >4jiw_D C1882, putative uncharacterized protein; PAAR-repeat motif, membrane piercing, type VI secretion SYST spike, cell puncturing device, beta-helix; 3.40A {Escherichia coli} 10.1038/nature12453
PVCcif11 plu2521 PLT_02558 3h2t 3h2t_A 96.6 2.6e-05 6.7e-10 79.0 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCcif12 plu2520 PLT_02557 1fho 1fho_A 64.0 2.5 6.5e-05 33.9 >1fho_A UNC-89; pleckstrin homology domain, electrostatics, muscle, signal transduction, signaling protein; NMR {Caenorhabditis elegans} SCOP: b.55.1.1 10.1016/S0969-2126(00)00509-8
PVCcif13 plu2519 PLT_02556 2xgf 2xgf_A 96.8 1.2e-05 3e-10 70.6 >2xgf_A Long tail fiber protein P37; viral protein; 2.20A {Enterobacteria phage T4} 10.1073/pnas.1011218107
PVCcif14 plu2518 PLT_02555 3b1j 3b1j_C 41.9 10 0.00027 26.0 >3b1j_C CP12; alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_C* 10.1016/j.str.2011.08.016
PVCcif15 plu2517 PLT_02554 5e7p 5e7p_A 99.9 3.4e-27 8.9e-32 238.8 >5e7p_A Cell division control protein CDC48; AAA ATPase, M. smegmatic, RECA, hydrolase; HET: ADP PG4 PGE; 2.51A {Mycobacterium smegmatis} 10.1128/JB.00905-15
PVCcif16 plu2516 PLT_02553 1u1j 1u1j_A 39.0 12 0.00032 35.6 >1u1j_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; methionine, synthase, methyltetrahydrofolate; HET: C2F; 2.40A {Arabidopsis thaliana} SCOP: c.1.22.2 c.1.22.2 PDB: 1u1h_A* 1u1u_A 1u22_A* 10.1074/jbc.C400325200
PVCcif17 plu2515 PLT_02552 4fbj 4fbj_A 100.0 3e-109 7e-114 735.1 >4fbj_A CIF, hypothetical protein; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Photorhabdus luminescens subsp} PDB: 3gqj_A No DOI found.
PVCcif18 plu2514 PLT_02551 3wmi 3wmi_B 20.6 41 0.0011 24.0 >3wmi_B EIAV GP45 wild type; alpha-helix, virus fusion, viral protein; 1.90A {Equine} PDB: 3wmj_B No DOI found.
PVClopt1 plu2385 PLT_02424 3eaa 3eaa_A 82.7 0.37 9.5e-06 33.4 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVClopt2 plu2386 PLT_02425 3j9q 3j9q_A 99.9 4.2e-33 1.1e-37 235.7 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClopt3 plu2387 PLT_02426 3j9q 3j9q_A 100.0 4.1e-34 1.1e-38 247.2 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClopt4 plu2388 PLT_02427 3j9q 3j9q_A 99.9 5.2e-31 1.3e-35 225.1 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClopt5 plu2389 PLT_02428 4tv4 4tv4_A 66.1 2.1 5.6e-05 30.9 >4tv4_A Uncharacterized protein; unknown function, ssgcid, virulence, structural genomics; 2.10A {Burkholderia pseudomallei} No DOI found.
PVClopt6 plu2390 PLT_02429 4zmk 4zmk_A 51.9 5.6 0.00015 24.7 >4zmk_A Telomere length regulator TAZ1; dimerization domain, fission yeast, DNA binding PR; 1.50A {Schizosaccharomyces pombe} 10.1038/cr.2015.76
PVClopt7 plu2391 PLT_02430 5a3a 5a3a_A 48.7 6.8 0.00018 31.1 >5a3a_A SIR2 family protein; transferase, P-ribosyltransferase, metalloprotein, NAD-depen lipoylation, regulatory enzyme, rossmann fold; 1.54A {Streptococcus pyogenes} PDB: 5a3b_A* 5a3c_A* 10.1016/j.molcel.2015.06.013
PVClopt8 plu2392 PLT_02431 4uhv 4uhv_A 99.9 3.8e-31 1e-35 252.7 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVClopt9 plu2393 PLT_02432 2ia7 2ia7_A 99.8 1.1e-23 2.7e-28 140.3 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVClopt10 plu2394 PLT_02433 4jiw 4jiw_D 61.0 3.1 8.1e-05 26.0 >4jiw_D C1882, putative uncharacterized protein; PAAR-repeat motif, membrane piercing, type VI secretion SYST spike, cell puncturing device, beta-helix; 3.40A {Escherichia coli} 10.1038/nature12453
PVClopt11 plu2395 PLT_02434 3h2t 3h2t_A 97.5 2.7e-07 7.1e-12 96.6 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVClopt12 plu2396 PLT_02435 1pqx 1pqx_A 49.6 6.5 0.00017 33.3 >1pqx_A Conserved hypothetical protein; ZR18,structure, autostructure,spins,autoassign, northeast structural genomics consortium; NMR {Staphylococcus aureus subsp} SCOP: d.267.1.1 PDB: 2ffm_A 2m6q_A 2m8w_A No DOI found.
PVClopt13 plu2397 PLT_02436 2j9w 2j9w_A 27.5 25 0.00065 28.7 >2j9w_A VPS28, VPS28-PROV protein; NZF finger, HIV budding, protein transport; 1.30A {Xenopus laevis} 10.1038/sj.emboj.7601501
PVClopt14 plu2398 PLT_02437 5e7p 5e7p_A 99.9 4.6e-27 1.2e-31 237.8 >5e7p_A Cell division control protein CDC48; AAA ATPase, M. smegmatic, RECA, hydrolase; HET: ADP PG4 PGE; 2.51A {Mycobacterium smegmatis} 10.1128/JB.00905-15
PVClopt15 plu2399 PLT_02438 3b33 3b33_A 21.2 40.0 0.001 18.4 >3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633} No DOI found.
PVClopt16 plu2400 PLT_02439 2ebf 2ebf_X 100.0 1.6e-85 4.1e-90 674.4 >2ebf_X Dermonecrotic toxin; pasteurella multocida toxin, trojan horse-like fold; HET: TRE; 1.90A {Pasteurella multocida} SCOP: a.296.1.1 c.150.1.2 d.3.1.17 PDB: 2ec5_A 2ebh_X* 10.1073/pnas.0608197104
PVClopt17 plu2401 PLT_02440 1ukf 1ukf_A 99.8 1.6e-25 4.2e-30 188.8 >1ukf_A Avirulence protein AVRPPH3; AVRPPHB, hypersensitive response, hydrolase; 1.35A {Pseudomonas syringae PV} SCOP: d.3.1.10 10.1073/pnas.2036536100
PVCunit1_1 plu1730 PLT_01758 3eaa 3eaa_A 77.0 0.79 2.1e-05 31.7 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVCunit1_2 plu1729 PLT_01757 3j9q 3j9q_A 100.0 2.6e-35 6.7e-40 248.9 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit1_3 plu1728 PLT_01756 3j9q 3j9q_A 100.0 8.6e-34 2.2e-38 247.3 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit1_4 plu1727 PLT_01755 3j9q 3j9q_A 99.9 2.5e-29 6.6e-34 215.0 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit1_5 plu1726 PLT_01754 3eaa 3eaa_A 82.2 0.39 1e-05 33.3 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVCunit1_6 plu1725 PLT_01753 1use 1use_A 58.6 3.7 9.6e-05 22.6 >1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A 10.1073/pnas.0403069101
PVCunit1_7 plu1724 PLT_01752 1avo 1avo_B 32.8 18 0.00046 27.2 >1avo_B 11S regulator; proteasome activator, cell adhesion, interferon induction; 2.80A {Homo sapiens} SCOP: a.24.8.1 10.1038/37670
PVCunit1_8 plu1723 PLT_01751 4uhv 4uhv_A 99.9 4e-29 1e-33 238.8 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVCunit1_9 plu1722 PLT_01750 2ia7 2ia7_A 99.2 2.9e-15 7.7e-20 106.9 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCunit1_10 plu1721 PLT_01749 2fwm 2fwm_X 33.8 17 0.00043 23.1 >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossmann fold, chorismate metabolism, short-CH oxidoreductase, tetramer; 2.00A {Escherichia coli} 10.1107/S0907444906015824
PVCunit1_11 plu1720 PLT_01748 3h2t 3h2t_A 96.0 0.00015 4e-09 73.4 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCunit1_12 plu1719 PLT_01747 1pqx 1pqx_A 53.4 5.1 0.00013 33.8 >1pqx_A Conserved hypothetical protein; ZR18,structure, autostructure,spins,autoassign, northeast structural genomics consortium; NMR {Staphylococcus aureus subsp} SCOP: d.267.1.1 PDB: 2ffm_A 2m6q_A 2m8w_A No DOI found.
PVCunit1_13 plu1718 PLT_01746 1ocy 1ocy_A 98.0 9.6e-09 2.5e-13 86.7 >1ocy_A Bacteriophage T4 short tail fibre; structural protein, fibrous protein, LIPO-polysaccharide binding, bacteriophage structural protein; HET: CIT; 1.5A {Bacteriophage T4} SCOP: d.231.1.1 10.1016/S0022-2836(03)00755-1
PVCunit1_14 plu1717 PLT_01745 5l3x 5l3x_B 17.9 52.0 0.0013 32.1 >5l3x_B Negative elongation factor C/D; transcription, repressor, transcription regulation, gene EXP; 2.75A {Homo sapiens} 10.7554/eLife.14981
PVCunit1_15 plu1716 PLT_01744 5e7p 5e7p_A 99.8 2.9e-25 7.6e-30 224.7 >5e7p_A Cell division control protein CDC48; AAA ATPase, M. smegmatic, RECA, hydrolase; HET: ADP PG4 PGE; 2.51A {Mycobacterium smegmatis} 10.1128/JB.00905-15
PVCunit1_16 plu1715 PLT_01743 1vwx 1vwx_f 22.5 36 0.00093 27.1 >1vwx_f Ribosomal protein EL33; mammalian, ribosome; 3.40A {Sus scrofa} PDB: 1vwz_f 1vx1_f 1vx4_f 3j3b_f 4cxd_f 4upx_f 4uq1_f 4w20_f 4w22_f 4w25_f 4w27_f Key error. ID likely deprecated.
PVCunit1_17 plu1714 PLT_01742 1eb6 1eb6_A 82.4 0.38 1e-05 31.5 >1eb6_A Neutral protease II; metalloproteinase, zinc, hydrolase; 1.0A {Aspergillus oryzae} SCOP: d.92.1.12 10.1107/S090744490101335X
PVCunit1_18 plu1713 PLT_01741 2hwn 2hwn_E 27.0 26 0.00068 21.9 >2hwn_E A kinase binding peptide; PKA, AKAP, dimerization/docking, D/D, regulatory subunit, TR; 1.60A {Rattus norvegicus} 10.1016/j.molcel.2006.09.015
PVCunit1_19 plu1712 PLT_01740 1yrt 1yrt_A 98.1 2.8e-09 7.3e-14 98.9 >1yrt_A Bifunctional hemolysin-adenylate cyclase; CYAA, layse, toxin; 2.10A {Bordetella pertussis} PDB: 1yru_A 1zot_A* 2col_A 10.1038/sj.emboj.7600800
PVCunit2_1 plu1708 PLT_01736 3eaa 3eaa_A 69.5 1.6 4.2e-05 30.1 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVCunit2_2 plu1707 PLT_01735 3j9q 3j9q_A 100.0 1.2e-33 3.2e-38 239.0 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit2_3 plu1706 PLT_01734 3j9q 3j9q_A 100.0 1.6e-34 4.3e-39 253.7 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit2_4 plu1705 PLT_01733 3j9q 3j9q_A 99.9 7.2e-30 1.9e-34 219.0 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit2_5 plu1704 PLT_01732 4etv 4etv_A 39.0 12 0.00032 27.6 >4etv_A Ryanodine receptor 2; phosphorylation, cardiac, metal transport; 1.65A {Mus musculus} 10.1016/j.str.2012.04.015
PVCunit2_6 plu1703 PLT_01731 4e71 4e71_A 53.7 5.0 0.00013 24.5 >4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens} No DOI found.
PVCunit2_7 plu1702 PLT_01730 5a3a 5a3a_A 64.0 2.5 6.6e-05 33.5 >5a3a_A SIR2 family protein; transferase, P-ribosyltransferase, metalloprotein, NAD-depen lipoylation, regulatory enzyme, rossmann fold; 1.54A {Streptococcus pyogenes} PDB: 5a3b_A* 5a3c_A* 10.1016/j.molcel.2015.06.013
PVCunit2_8 plu1701 PLT_01729 4uhv 4uhv_A 99.9 2.2e-30 5.8e-35 247.3 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVCunit2_9 plu1700 PLT_01728 2ia7 2ia7_A 99.7 1.1e-22 2.9e-27 138.2 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCunit2_10 plu1699 PLT_01727 2k4r 2k4r_A 34.4 16 0.00042 21.1 >2k4r_A Neurotrypsin; kringle domain, disulfide-rich protein fold, serine endopeptidase, hydrolase, extracellular proteolysis; NMR {Rattus norvegicus} PDB: 2k51_A 10.1021/bi800555z
PVCunit2_11 plu1698 PLT_01726 3h2t 3h2t_A 96.8 8e-06 2.1e-10 82.6 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCunit2_12 plu1697 PLT_01725 3sok 3sok_A 25.8 28.0 0.00073 29.3 >3sok_A Fimbrial protein; pilus subunit, extracellular, cell adhesion; 2.30A {Dichelobacter nodosus} 10.1074/jbc.M111.297242
PVCunit2_13 plu1696 PLT_01724 3izo 3izo_F 98.4 3.3e-10 8.5e-15 108.7 >3izo_F Fiber; pentameric penton base, trimeri viral protein; 3.60A {Human adenovirus 5} 10.1016/j.jmb.2010.11.043
PVCunit2_14 plu1695 PLT_01723 4u7b 4u7b_A 99.8 2e-23 5.3e-28 167.0 >4u7b_A Mariner MOS1 transposase; transposon synaptic complex, helix-turn-helix, like fold, DNA transposition, hydrolase-DNA complex; HET: DNA; 3.09A {Drosophila mauritiana} PDB: 4r79_A 3hos_A* 3hot_A 10.1093/nar/gkv096
PVCunit2_15 plu1694 PLT_01722 2mdp 2mdp_A 23.8 32.0 0.00085 28.7 >2mdp_A Gene 1.2 protein; dntpase inhibitor, viral protein; NMR {Enterobacteria phage T7} No DOI found.
PVCunit2_16 plu1693 PLT_01721 5e7p 5e7p_A 99.8 7.7e-26 2e-30 228.7 >5e7p_A Cell division control protein CDC48; AAA ATPase, M. smegmatic, RECA, hydrolase; HET: ADP PG4 PGE; 2.51A {Mycobacterium smegmatis} 10.1128/JB.00905-15
PVCunit2_17 plu1692 PLT_01720 3ggm 3ggm_A 54.2 4.9 0.00013 26.2 >3ggm_A Uncharacterized protein BT9727_2919; bacillus cereus group., structural genomics, PSI-2, protein structure initiative; 2.00A {Bacillus thuringiensis serovarkonkukian} No DOI found.
PVCunit2_18 plu1691 PLT_01719 3u8p 3u8p_A 21.9 37.0 0.00097 31.6 >3u8p_A Cytochrome B562 integral fusion with enhanced GRE fluorescent protein; directed evolution, domain insertion, energy transfer, fluor quenching; HET: CRO HEM; 2.75A {Aequorea victoria} 10.1021/ja301987h
PVCunit2_19 plu1690 PLT_01718 2rio 2rio_A 79.3 0.6 1.6e-05 29.0 >2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* 10.1016/j.cell.2007.10.057
PVCunit2_20 plu1689 PLT_01717 2lqt 2lqt_A 37.7 13 0.00034 28.2 >2lqt_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 7; CHCH domain, mitochondrial import, alpha-hairpin, MIA40-DEPE disulfide relay system; NMR {Homo sapiens} 10.1016/j.jsb.2012.07.007
PVCunit3_1 plu1689 PLT_01716 1l4i 1l4i_A 69.3 1.7 4.3e-05 30.5 >1l4i_A SFAE protein; periplasmic chaperone, immunoglobulin fold; 2.20A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 10.1107/S0907444902005954
PVCunit3_2 plu1688 PLT_01715 3j9q 3j9q_A 100.0 8.9e-34 2.3e-38 240.0 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit3_3 plu1687 PLT_01714 3j9q 3j9q_A 100.0 3.8e-34 1e-38 249.4 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit3_4 plu1686 PLT_01713 3j9q 3j9q_A 99.9 9.2e-29 2.4e-33 211.5 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit3_5 plu1685 PLT_01712 4tv4 4tv4_A 61.4 3.0 7.9e-05 30.2 >4tv4_A Uncharacterized protein; unknown function, ssgcid, virulence, structural genomics; 2.10A {Burkholderia pseudomallei} No DOI found.
PVCunit3_6 plu1684 PLT_01711 1x8d 1x8d_A 72.3 1.3 3.3e-05 26.0 >1x8d_A Hypothetical protein YIIL; mutarotase, L-rhamnose, biosynthetic protein; HET: RNS; 1.80A {Escherichia coli} SCOP: d.58.4.21 10.1016/j.jmb.2005.03.047
PVCunit3_7 plu1683 PLT_01710 1avo 1avo_B 30.8 20 0.00052 26.9 >1avo_B 11S regulator; proteasome activator, cell adhesion, interferon induction; 2.80A {Homo sapiens} SCOP: a.24.8.1 10.1038/37670
PVCunit3_8 plu1682 PLT_01709 4uhv 4uhv_A 99.9 9.8e-29 2.5e-33 236.1 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVCunit3_9 plu1681 PLT_01708 2ia7 2ia7_A 99.7 9e-21 2.4e-25 127.1 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCunit3_10 plu1680 PLT_01707 4rnd 4rnd_B 32.1 18 0.00048 24.5 >4rnd_B V-type proton ATPase subunit F; alpha helical, rossmann fold, hydrolase, regulatory, couplin; 3.18A {Saccharomyces cerevisiae S288C} PDB: 3j9u_N 3j9v_N 3j9t_N 5d80_o 10.1074/jbc.M114.622688
PVCunit3_11 plu1679 PLT_01706 3h2t 3h2t_A 96.0 0.00014 3.8e-09 73.6 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCunit3_12 plu1678 PLT_01705 5a9c 5a9c_A 33.6 17 0.00044 36.7 >5a9c_A Polyhedrin; viral protein, insect virus occlusion BODY, microcrystal; 1.71A {Antheraea mylitta cypovirus 4} 10.1016/j.jsb.2015.08.009
PVCunit3_13 plu1677 PLT_01704 1ocy 1ocy_A 96.8 1.2e-05 3.1e-10 66.1 >1ocy_A Bacteriophage T4 short tail fibre; structural protein, fibrous protein, LIPO-polysaccharide binding, bacteriophage structural protein; HET: CIT; 1.5A {Bacteriophage T4} SCOP: d.231.1.1 10.1016/S0022-2836(03)00755-1
PVCunit3_14 plu1676 PLT_01703 2qcp 2qcp_X 18.9 48.0 0.0012 25.7 >2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X 10.1110/ps.073021307
PVCunit3_15 plu1675 PLT_01702 5e7p 5e7p_A 99.9 8.1e-27 2.1e-31 236.0 >5e7p_A Cell division control protein CDC48; AAA ATPase, M. smegmatic, RECA, hydrolase; HET: ADP PG4 PGE; 2.51A {Mycobacterium smegmatis} 10.1128/JB.00905-15
PVCunit3_16 plu1674 PLT_01701 4faz 4faz_A 33.5 17 0.00044 20.9 >4faz_A 4-oxalocrotonate isomerase protein; alpha/beta fold, tautomerase; 1.57A {Methylibium petroleiphilum} 10.1016/j.abb.2013.06.016
PVCunit3_17 plu1673 PLT_01700 1vwx 1vwx_f 46.3 7.9 0.00021 26.0 >1vwx_f Ribosomal protein EL33; mammalian, ribosome; 3.40A {Sus scrofa} PDB: 1vwz_f 1vx1_f 1vx4_f 3j3b_f 4cxd_f 4upx_f 4uq1_f 4w20_f 4w22_f 4w25_f 4w27_f Key error. ID likely deprecated.
PVCunit3_18 plu1672 PLT_01699 1wyp 1wyp_A 23.3 34 0.00088 25.8 >1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} No DOI found.
PVCunit3_19 plu1671 PLT_01698 2a7o 2a7o_A 21.3 39 0.001 26.3 >2a7o_A Huntingtin interacting protein B; SRI domain, SRI, HSRI, SET2, HSET2, phosphoctd associating protein, SET2 RPB1-interacting domain, PCID, PCAP; NMR {Homo sapiens} 10.1073/pnas.0506350102
PVCunit4_1 plu1667 PLT_01696 3eaa 3eaa_A 74.4 1.0 2.7e-05 31.1 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVCunit4_2 plu1666 PLT_01695 3j9q 3j9q_A 100.0 1.4e-33 3.8e-38 238.7 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit4_3 plu1665 PLT_01694 3j9q 3j9q_A 100.0 6.2e-35 1.6e-39 255.3 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit4_4 plu1664 PLT_01693 3j9q 3j9q_A 99.9 9.4e-30 2.5e-34 218.9 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit4_5 plu1663 PLT_01692 4tv4 4tv4_A 69.4 1.6 4.3e-05 31.6 >4tv4_A Uncharacterized protein; unknown function, ssgcid, virulence, structural genomics; 2.10A {Burkholderia pseudomallei} No DOI found.
PVCunit4_6 plu1662 PLT_01691 3hk4 3hk4_A 45.6 8.2 0.00021 20.2 >3hk4_A MLR7391 protein; NTF2-like protein, structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, lyase; HET: MSE; 1.96A {Mesorhizobium loti} No DOI found.
PVCunit4_7 plu1661 PLT_01690 5a3a 5a3a_A 47.6 7.3 0.00019 30.9 >5a3a_A SIR2 family protein; transferase, P-ribosyltransferase, metalloprotein, NAD-depen lipoylation, regulatory enzyme, rossmann fold; 1.54A {Streptococcus pyogenes} PDB: 5a3b_A* 5a3c_A* 10.1016/j.molcel.2015.06.013
PVCunit4_8 plu1660 PLT_01689 4uhv 4uhv_A 99.9 1.8e-31 4.7e-36 254.9 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVCunit4_9 plu1659 PLT_01688 2ia7 2ia7_A 99.7 4.8e-22 1.3e-26 135.0 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCunit4_10 plu1658 PLT_01687 2k4r 2k4r_A 30.7 20 0.00053 20.7 >2k4r_A Neurotrypsin; kringle domain, disulfide-rich protein fold, serine endopeptidase, hydrolase, extracellular proteolysis; NMR {Rattus norvegicus} PDB: 2k51_A 10.1021/bi800555z
PVCunit4_11 plu1657 PLT_01686 3h2t 3h2t_A 96.6 2.6e-05 6.8e-10 78.9 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCunit4_12 plu1656 PLT_01685 3p9y 3p9y_A 33.1 17.0 0.00045 36.4 >3p9y_A CG14216, LD40846P; phosphatase, CIS proline, LMW PTP-like fold, RNA polymerase hydrolase; HET: N7P SEP SET IMD PG4; 2.10A {Drosophila melanogaster} PDB: 4imi_B* 4imj_B* 4ygx_B* 3fdf_A 3fmv_A 3omx_A 3omw_A 10.1074/jbc.M110.197129
PVCunit4_13 plu1655 PLT_01684 1ocy 1ocy_A 98.1 3.8e-09 9.9e-14 88.4 >1ocy_A Bacteriophage T4 short tail fibre; structural protein, fibrous protein, LIPO-polysaccharide binding, bacteriophage structural protein; HET: CIT; 1.5A {Bacteriophage T4} SCOP: d.231.1.1 10.1016/S0022-2836(03)00755-1
PVCunit4_14 plu1654 PLT_01683 2kx7 2kx7_A 33.4 17.0 0.00044 31.7 >2kx7_A Sensor-like histidine kinase YOJN; alpha-beta-loop (ABL) domain, phosphotransfer, RCS regulatio two-component system, protein binding; NMR {Escherichia coli} 10.1016/j.str.2011.01.012
PVCunit4_15 plu1653 PLT_01682 5e7p 5e7p_A 99.8 3.5e-25 9e-30 224.4 >5e7p_A Cell division control protein CDC48; AAA ATPase, M. smegmatic, RECA, hydrolase; HET: ADP PG4 PGE; 2.51A {Mycobacterium smegmatis} 10.1128/JB.00905-15
PVCunit4_16 plu1652 PLT_01681 4p7x 4p7x_A 18.4 50.0 0.0013 28.5 >4p7x_A P4H, L-proline CIS-4-hydroxylase; HET: AKG CXS; 1.30A {Rhizobium loti} PDB: 4p7w_A* 10.1021/sb500247a
PVCunit4_17 plu1651 PLT_01680 2yy0 2yy0_A 42.7 9.7 0.00025 26.4 >2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens} No DOI found.
PVCpnf_1 PAU_03353 PAU_03392 3eaa 3eaa_A 62.9 2.7 7.1e-05 29.0 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVCpnf_2 PAU_03352 PAU_03391 3j9q 3j9q_A 100.0 2e-34 5.3e-39 243.5 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCpnf_3 PAU_03351 PAU_03390 3j9q 3j9q_A 99.9 4e-33 1e-37 241.7 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCpnf_4 PAU_03350 PAU_03389 3j9q 3j9q_A 99.8 6.5e-26 1.7e-30 195.0 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCpnf_5 PAU_03349 PAU_03388 3eaa 3eaa_A 92.7 0.017 4.4e-07 40.3 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVCpnf_6 PAU_03348 PAU_03387 4aaa 4aaa_A 78.2 0.68 1.8e-05 28.3 >4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A* No DOI found.
PVCpnf_7 PAU_03347 PAU_03386 2v6x 2v6x_B 36.8 14 0.00036 26.4 >2v6x_B DOA4-independent degradation protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae} 10.1038/nature06171
PVCpnf_8 PAU_03346 PAU_03385 4uhv 4uhv_A 99.9 8.2e-29 2.1e-33 236.9 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVCpnf_9 PAU_03345 PAU_03384 2ia7 2ia7_A 99.7 1e-21 2.6e-26 130.8 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCpnf_10 PAU_03344 PAU_03383 1ukf 1ukf_A 82.0 0.4 1.1e-05 36.7 >1ukf_A Avirulence protein AVRPPH3; AVRPPHB, hypersensitive response, hydrolase; 1.35A {Pseudomonas syringae PV} SCOP: d.3.1.10 10.1073/pnas.2036536100
PVCpnf_11 PAU_03343 PAU_03382 3h2t 3h2t_A 97.4 4.4e-07 1.2e-11 89.7 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCpnf_12 PAU_03342 PAU_03381 2ex2 2ex2_A 39.3 12.0 0.00031 38.0 >2ex2_A Penicillin-binding protein 4; cephem, penem, D-Ala alanine-carboxypeptidase, D-alanyl-D-alanine-endopeptidase, hydrolase; 1.55A {Escherichia coli} SCOP: e.3.1.3 PDB: 2ex6_A* 2ex8_A* 2ex9_A* 2exa_A* 2exb_A* 10.1021/bi051533t
PVCpnf_13 PAU_03341 PAU_03380 3izo 3izo_F 98.1 2.8e-09 7.3e-14 107.6 >3izo_F Fiber; pentameric penton base, trimeri viral protein; 3.60A {Human adenovirus 5} 10.1016/j.jmb.2010.11.043
PVCpnf_14 PAU_03340 PAU_03379 3c9p 3c9p_A 32.4 18 0.00047 32.2 >3c9p_A Uncharacterized protein SP1917; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 1.96A {Streptococcus pneumoniae} No DOI found.
PVCpnf_15 PAU_03339 PAU_03378 5g4f 5g4f_A 99.9 2.1e-26 5.5e-31 222.3 >5g4f_A VCP-like ATPase; hydrolase, VAT, proteasome, protein dynamics, unfoldase, conformations, AAA ATPase; 7.00A {Thermoplasma acidophilum} PDB: 5g4g_A 1cz4_A 1cz5_A 10.1073/pnas.1603980113
PVCpnf_16 PAU_03338 PAU_03377 5jbr 5jbr_A 29.2 22 0.00058 23.9 >5jbr_A Uncharacterized protein BCAV_2135; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 1.65A {Beutenbergia cavernae} No DOI found.
PVCpnf_17 PAU_03337 PAU_03376 1yrt 1yrt_A 98.5 9e-11 2.4e-15 108.6 >1yrt_A Bifunctional hemolysin-adenylate cyclase; CYAA, layse, toxin; 2.10A {Bordetella pertussis} PDB: 1yru_A 1zot_A* 2col_A 10.1038/sj.emboj.7600800
PVCpnf_18 PAU_03336 PAU_03375 5g4d 5g4d_A 60.4 3.2 8.5e-05 23.4 >5g4d_A CAS2, crispr-associated endoribonuclease CAS2; immune system, cripsr-CAS complex, adaptation; 1.70A {Thermococcus onnurineus} PDB: 4tno_A 2i0x_A 10.1002/pro.2981
PVCpnf_19 PAU_03334 PAU_03374 3gqe 3gqe_A 62.7 2.7 7.2e-05 25.6 >3gqe_A Non-structural protein 3; macro domain, X domain, venezuelan equine encephalitis virus alphavirus; HET: BCN; 2.30A {Venezuelan equine encephalitis virus} PDB: 3gqo_A* 10.1128/JVI.00189-09
PVCpnf_20 PAU_03333 PAU_03373 3fxq 3fxq_A 99.7 2.4e-21 6.3e-26 122.5 >3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A* 10.1111/j.1365-2958.2010.07043.x
PVCpnf_21 PAU_03332 PAU_03372 1hq0 1hq0_A 100.0 1.1e-64 2.8e-69 458.4 >1hq0_A CNF1, cytotoxic necrotizing factor 1; beta sandwich, RHO deamidase, RHO transglutaminase, toxin; 1.83A {Escherichia coli} SCOP: d.194.1.1 PDB: 1hzg_A 10.1038/89610
PVCpnf_22 PAU_03331 PAU_03371 2oyz 2oyz_A 62.7 2.8 7.2e-05 24.7 >2oyz_A UPF0345 protein VPA0057; unknown function, structural genomi 2, protein structure initiative, midwest center for structu genomics, MCSG; 1.71A {Vibrio parahaemolyticus} SCOP: b.82.1.22 No DOI found.
PVCpnf_23 PAU_03330 PAU_03370 3hdf 3hdf_A 100.0 1.6e-41 4.1e-46 227.5 >3hdf_A Lysozyme; antimicrobial, bacteriolytic enzyme, glycosid hydrolase, late protein; 1.70A {Enterobacteria phage P21} 10.1038/nsmb.1681
PVCpnf_24 PAU_03329 PAU_03369 3vp9 3vp9_A 61.6 3 7.8e-05 30.4 >3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A 10.1074/jbc.M112.369652
PVCcif_1 PAU_01993 PAU_01961 3jqo 3jqo_B 41.5 10 0.00027 27.0 >3jqo_B TRAO protein; helical outer membrane TM, outer membrane protein complex, T protein; HET: LDA; 2.60A {Escherichia coli} PDB: 3zbi_B 2ofq_A 10.1038/nature08588
PVCcif_2 PAU_01994 PAU_01962 3j9q 3j9q_A 99.9 4.5e-33 1.2e-37 236.1 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCcif_3 PAU_01995 PAU_01963 3j9q 3j9q_A 99.9 1.3e-30 3.4e-35 228.9 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCcif_4 PAU_01996 PAU_01964 3j9q 3j9q_A 99.9 9.7e-27 2.5e-31 199.5 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCcif_5 PAU_01997 PAU_01965 4tv4 4tv4_A 57.2 4.0 0.0001 29.5 >4tv4_A Uncharacterized protein; unknown function, ssgcid, virulence, structural genomics; 2.10A {Burkholderia pseudomallei} No DOI found.
PVCcif_6 PAU_01998 PAU_01966 3nyi 3nyi_A 42.8 9.7 0.00025 24.7 >3nyi_A FAT acid-binding protein; stearic acid, DEGV family protein, structural genomics, PSI- protein structure initiative; HET: STE; 1.90A {Eubacterium ventriosum} No DOI found.
PVCcif_7 PAU_01999 PAU_01967 5a3a 5a3a_A 47.5 7.3 0.00019 30.9 >5a3a_A SIR2 family protein; transferase, P-ribosyltransferase, metalloprotein, NAD-depen lipoylation, regulatory enzyme, rossmann fold; 1.54A {Streptococcus pyogenes} PDB: 5a3b_A* 5a3c_A* 10.1016/j.molcel.2015.06.013
PVCcif_8 PAU_02000 PAU_01968 4uhv 4uhv_A 99.9 1e-27 2.6e-32 229.1 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVCcif_9 PAU_02001 PAU_01969 2ia7 2ia7_A 99.7 8.1e-22 2.1e-26 132.1 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCcif_10 PAU_02002 PAU_01970 3dfz 3dfz_A 35.9 15 0.00038 26.2 >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} 10.1042/BJ20080785
PVCcif_11 PAU_02003 PAU_01971 3h2t 3h2t_A 96.4 5.2e-05 1.4e-09 76.8 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCcif_12 PAU_02004 PAU_01972 4orl 4orl_A 63.3 2.6 6.9e-05 37.5 >4orl_A Uncharacterized protein; PF16022 family, DUF4783, structural genomics, joint center F structural genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Bacteroides ovatus} No DOI found.
PVCcif_13 PAU_02005 PAU_01973 1ocy 1ocy_A 98.4 2.3e-10 6e-15 91.7 >1ocy_A Bacteriophage T4 short tail fibre; structural protein, fibrous protein, LIPO-polysaccharide binding, bacteriophage structural protein; HET: CIT; 1.5A {Bacteriophage T4} SCOP: d.231.1.1 10.1016/S0022-2836(03)00755-1
PVCcif_14 PAU_02006 PAU_01974 2d8r 2d8r_A 42.5 9.8 0.00026 29.1 >2d8r_A THAP domain-containing protein 2; NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.16 No DOI found.
PVCcif_15 PAU_02007 PAU_01975 5e7p 5e7p_A 99.8 4.8e-26 1.3e-30 230.3 >5e7p_A Cell division control protein CDC48; AAA ATPase, M. smegmatic, RECA, hydrolase; HET: ADP PG4 PGE; 2.51A {Mycobacterium smegmatis} 10.1128/JB.00905-15
PVCcif_16 PAU_02008 PAU_01976 4adx 4adx_G 38.8 12 0.00032 27.2 >4adx_G RPLX; ribosome, protein synthesis; 6.60A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2jxt_A 10.1016/j.jmb.2012.01.018
PVCcif_17 PAU_02009 PAU_01977 4fbj 4fbj_A 100.0 4.2e-96 1e-100 648.7 >4fbj_A CIF, hypothetical protein; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Photorhabdus luminescens subsp} PDB: 3gqj_A No DOI found.
PVCcif_18 PAU_02010 PAU_01978 2b9i 2b9i_C 28.4 24 0.00061 22.2 >2b9i_C MSG5, tyrosine-protein phosphatase MSG5; transferase; HET: ADP; 2.50A {Saccharomyces cerevisiae} 10.1016/j.molcel.2005.10.030
PVCcif_19 PAU_02011 PAU_01979 2hxj 2hxj_A 61.1 3.1 8.1e-05 34.1 >2hxj_A Hypothetical protein; APC83807, structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.21A {Neisseria meningitidis MC58} SCOP: a.136.1.1 PDB: 3mw6_A Key error. ID likely deprecated.
PVCcif_20 PAU_02012 PAU_01980 3gkn 3gkn_A 37.8 13 0.00034 22.7 >3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A 10.1016/j.jmb.2009.05.030
PVClumt_1 PAU_02247 PAU_02206 3eaa 3eaa_A 61.3 3.0 7.9e-05 28.7 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVClumt_2 PAU_02246 PAU_02205 3j9q 3j9q_A 99.9 8.1e-31 2.1e-35 228.3 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClumt_3 PAU_02245 PAU_02204 3j9q 3j9q_A 99.9 2.8e-28 7.4e-33 208.3 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClumt_4 PAU_02244 PAU_02203 3eaa 3eaa_A 52.9 5.3 0.00014 27.7 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVClumt_5 PAU_02243 PAU_02202 1use 1use_A 67.8 1.9 4.9e-05 23.9 >1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A 10.1073/pnas.0403069101
PVClumt_6 PAU_02242 PAU_02201 4v2x 4v2x_A 32.7 18.0 0.00047 31.3 >4v2x_A Endo-beta-1,4-glucanase (cellulase B); hydrolase, TRI-modular; 1.64A {Bacillus halodurans} 10.1074/jbc.M115.637827
PVClumt_7 PAU_02241 PAU_02200 2p5z 2p5z_X 99.7 5.6e-22 1.5e-26 179.9 >2p5z_X Type VI secretion system component; structural genomics, unknown function, PSI-2, protein struct initiative; 2.60A {Escherichia coli O6} SCOP: b.40.8.1 b.106.1.1 b.106.1.1 10.1073/pnas.0813360106
PVClumt_8 PAU_02240 PAU_02199 2ia7 2ia7_A 99.7 3.7e-22 9.6e-27 133.8 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVClumt_9 afp10 PAU_02198 4jiv 4jiv_D 69.6 1.6 4.2e-05 27.5 >4jiv_D VCA0105, putative uncharacterized protein; PAAR-repeat motif, membrane piercing, type VI secretion SYST vibrio cholerae VGRG2; HET: PLM STE ELA; 1.90A {Vibrio cholerae o1 biovar eltor} 10.1038/nature12453
PVClumt_10 afp11 PAU_02197 3h2t 3h2t_A 96.8 9.6e-06 2.5e-10 78.8 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVClumt_11 PAU_02237 PAU_02196 1yo5 1yo5_C 39.5 12 0.00031 32.1 >1yo5_C SAM pointed domain containing ETS transcription factor; protein-DNA complex, double helix, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.4.5.21 10.1021/bi047352t
PVClumt_12 PAU_02236 PAU_02195 1v1h 1v1h_A 97.7 9.4e-08 2.4e-12 71.3 >1v1h_A Fibritin, fiber protein; chimera; 1.9A {Human adenovirus type 2} SCOP: b.83.1.1 h.1.17.1 PDB: 1v1i_A 10.1016/j.jmb.2004.07.008
PVClumt_13 PAU_02235 PAU_02194 1osn 1osn_A 41.0 11 0.00028 36.0 >1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1 10.1074/jbc.M302025200
PVClumt_14 PAU_02234 PAU_02193 4uid 4uid_A 63.3 2.6 6.9e-05 31.3 >4uid_A S-layer SBSC, surface layer protein; sugar binding protein, G. stearothermophilus; 2.80A {Geobacillus stearothermophilus} No DOI found.
PVClumt_15 PAU_02233 PAU_02192 1tdp 1tdp_A 22.1 37.0 0.00096 27.2 >1tdp_A Carnobacteriocin B2 immunity protein; four-helix bundle, antimicrobial protein; NMR {Carnobacterium maltaromaticum} SCOP: a.29.8.1 10.1021/bi048854+
PVClumt_16 PAU_02232 PAU_02191 5ftj 5ftj_A 99.8 2.9e-25 7.6e-30 220.3 >5ftj_A Transitional endoplasmic reticulum ATPase; hydrolase, single-particle, AAA ATPase; HET: ADP OJA; 2.30A {Homo sapiens} PDB: 3cf1_A* 3cf3_A* 3cf2_A* 5ftk_A* 5ftl_A* 5ftm_A* 5ftn_A* 1r7r_A* 5c19_A 5c1b_A* 5c18_A* 3cf0_A* 10.1126/science.aad7974
PVClumt_17 PAU_02231 PAU_02190 3lfh 3lfh_A 39.7 12 0.0003 28.9 >3lfh_A Manxa, phosphotransferase system, mannose/fructose-speci component IIA; PTS; 1.80A {Thermoanaerobacter tengcongensis} No DOI found.
PVClumt_18 PAU_02230 PAU_02189 4mix 4mix_A 100.0 6e-57 1.6e-61 486.1 >4mix_A Putative insecticidal toxin; tyrosine glycosylation, UDP-GLCNAC, nucleotide-binding domai rossmann-like, glycosyltransferase; HET: MSE UD1; 1.80A {Photorhabdus asymbiotica subsp} 10.1038/nsmb.2688
PVClopT_1 PAU_02112 PAU_02074 3eaa 3eaa_A 83.5 0.32 8.3e-06 33.5 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVClopT_2 PAU_02111 PAU_02073 3j9q 3j9q_A 100.0 2.8e-35 7.3e-40 248.2 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClopT_3 PAU_02110 PAU_02072 3j9q 3j9q_A 99.9 3.9e-31 1e-35 226.1 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClopT_4 PAU_02109 PAU_02071 4tv4 4tv4_A 70.8 1.5 3.8e-05 31.8 >4tv4_A Uncharacterized protein; unknown function, ssgcid, virulence, structural genomics; 2.10A {Burkholderia pseudomallei} No DOI found.
PVClopT_5 PAU_02108 PAU_02070 4hf1 4hf1_A 81.1 0.47 1.2e-05 28.7 >4hf1_A HTH-type transcriptional regulator ISCR; WHTH, protein-DNA complex, iron-sulfur cluster, winged helix helix, transcriptional regulator, redox sensor; HET: DNA; 2.22A {Escherichia coli} PDB: 4hf2_A* 4chu_A 10.1038/nsmb.2568
PVClopT_6 PAU_02107 PAU_02069 2vol 2vol_A 28.5 23 0.00061 22.9 >2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A Key error. ID likely deprecated.
PVClopT_7 PAU_02106 PAU_02068 4uhv 4uhv_A 99.9 8.6e-30 2.2e-34 243.3 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVClopT_8 PAU_02105 PAU_02067 2ia7 2ia7_A 99.8 2.3e-23 6e-28 138.6 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVClopT_9 PAU_02104 PAU_02066 3ojo 3ojo_A 31.3 19 0.00051 28.0 >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* 10.1074/jbc.M110.216002
PVClopT_10 PAU_02103 PAU_02065 3h2t 3h2t_A 97.1 2.3e-06 6.1e-11 89.7 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVClopT_11 PAU_02102 PAU_02064 1pqx 1pqx_A 37.4 13 0.00035 31.4 >1pqx_A Conserved hypothetical protein; ZR18,structure, autostructure,spins,autoassign, northeast structural genomics consortium; NMR {Staphylococcus aureus subsp} SCOP: d.267.1.1 PDB: 2ffm_A 2m6q_A 2m8w_A No DOI found.
PVClopT_12 PAU_02101 PAU_02063 4yap 4yap_A 31.1 20 0.00052 29.1 >4yap_A Glutathione S-transferase homolog; GSH-lyase GSH-dependent; 1.11A {Sphingobium SP} PDB: 4g10_A 4yav_A* 10.1074/jbc.M115.700427
PVClopT_13 PAU_02100 PAU_02062 5e7p 5e7p_A 99.9 2e-26 5.3e-31 232.9 >5e7p_A Cell division control protein CDC48; AAA ATPase, M. smegmatic, RECA, hydrolase; HET: ADP PG4 PGE; 2.51A {Mycobacterium smegmatis} 10.1128/JB.00905-15
PVClopT_14 PAU_02099 PAU_02061 3rbt 3rbt_A 19.3 46.0 0.0012 25.1 >3rbt_A Glutathione transferase O1; glutathione S-transferase omega3; 2.20A {Bombyx mori} 10.1016/j.jmb.2011.07.019
PVClopT_15 PAU_02098 PAU_02060 2ebf 2ebf_X 100.0 5.6e-90 1.5e-94 707.6 >2ebf_X Dermonecrotic toxin; pasteurella multocida toxin, trojan horse-like fold; HET: TRE; 1.90A {Pasteurella multocida} SCOP: a.296.1.1 c.150.1.2 d.3.1.17 PDB: 2ec5_A 2ebh_X* 10.1073/pnas.0608197104
PVClopT_16 PAU_02097 PAU_02059 2jsp 2jsp_A 15.3 66.0 0.0017 24.7 >2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens} 10.1073/pnas.0706659104
PVClopT_17 PAU_02096 PAU_02058 1ukf 1ukf_A 99.9 1.4e-26 3.8e-31 195.3 >1ukf_A Avirulence protein AVRPPH3; AVRPPHB, hypersensitive response, hydrolase; 1.35A {Pseudomonas syringae PV} SCOP: d.3.1.10 10.1073/pnas.2036536100
PVClopT_18 PAU_02095 PAU_02057 4igl 4igl_B 100.0 8.8e-59 2.3e-63 451.0 >4igl_B YENC2; beta-propeller, RHS, toxin complex, toxin transporter/chaper secreted, toxin; 2.49A {Yersinia} 10.1038/nature12465
PVCunit1_1 afp1 PAU_02775 3eaa 3eaa_A 73.0 1.2 3.1e-05 30.8 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVCunit1_2 afp2 PAU_02776 3j9q 3j9q_A 100.0 3.7e-36 9.7e-41 254.4 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit1_3 afp3 PAU_02777 3j9q 3j9q_A 100.0 2.6e-35 6.9e-40 257.2 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit1_4 afp4 PAU_02778 3j9q 3j9q_A 99.9 3.6e-29 9.5e-34 214.6 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit1_5 afp5 PAU_02779 4tv4 4tv4_A 63.6 2.6 6.7e-05 30.5 >4tv4_A Uncharacterized protein; unknown function, ssgcid, virulence, structural genomics; 2.10A {Burkholderia pseudomallei} No DOI found.
PVCunit1_6 afp7 PAU_02780 4e71 4e71_A 48.8 6.8 0.00018 24.0 >4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens} No DOI found.
PVCunit1_7 afp7 PAU_02781 5a3a 5a3a_A 45.8 8.1 0.00021 30.6 >5a3a_A SIR2 family protein; transferase, P-ribosyltransferase, metalloprotein, NAD-depen lipoylation, regulatory enzyme, rossmann fold; 1.54A {Streptococcus pyogenes} PDB: 5a3b_A* 5a3c_A* 10.1016/j.molcel.2015.06.013
PVCunit1_8 PAU_02796 PAU_02782 4uhv 4uhv_A 99.9 1.4e-30 3.7e-35 248.7 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVCunit1_9 afp9 PAU_02783 2ia7 2ia7_A 99.7 5.4e-22 1.4e-26 133.1 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCunit1_10 afp10 PAU_02784 1pml 1pml_A 37.7 13 0.00034 21.4 >1pml_A Tissue plasminogen activator kringle 2; hydrolase(serine protease); 2.38A {Homo sapiens} SCOP: g.14.1.1 PDB: 1pk2_A* 1tpk_A 10.1002/pro.5560030605
PVCunit1_11 afp11 PAU_02785 3h2t 3h2t_A 96.7 1.5e-05 3.9e-10 80.6 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCunit1_12 afp12 PAU_02786 1pqx 1pqx_A 18.2 51.0 0.0013 28.2 >1pqx_A Conserved hypothetical protein; ZR18,structure, autostructure,spins,autoassign, northeast structural genomics consortium; NMR {Staphylococcus aureus subsp} SCOP: d.267.1.1 PDB: 2ffm_A 2m6q_A 2m8w_A No DOI found.
PVCunit1_13 PAU_02801 PAU_02787 1ocy 1ocy_A 98.3 6.7e-10 1.8e-14 92.9 >1ocy_A Bacteriophage T4 short tail fibre; structural protein, fibrous protein, LIPO-polysaccharide binding, bacteriophage structural protein; HET: CIT; 1.5A {Bacteriophage T4} SCOP: d.231.1.1 10.1016/S0022-2836(03)00755-1
PVCunit1_14 orf25 PAU_02788 3dzd 3dzd_A 24.8 30 0.00078 28.5 >3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A 10.1016/j.jmb.2008.10.024
PVCunit1_15 PAU_02803 PAU_02789 5e7p 5e7p_A 99.9 4.9e-28 1.3e-32 244.9 >5e7p_A Cell division control protein CDC48; AAA ATPase, M. smegmatic, RECA, hydrolase; HET: ADP PG4 PGE; 2.51A {Mycobacterium smegmatis} 10.1128/JB.00905-15
PVCunit1_16 PAU_02804 PAU_02790 4uhq 4uhq_A 35.4 15 0.00039 29.3 >4uhq_A Large component of pyocin AP41; hydrolase, bacteriocin, DNAse; HET: CIT; 1.50A {Pseudomonas aeruginosa} PDB: 4uhp_A* 10.1016/j.jmb.2015.07.014
PVCunit1_17 hrpN PAU_02791 1yqf 1yqf_A 60.7 3.2 8.3e-05 33.9 >1yqf_A Hypothetical protein LMAJ011689; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.30A {Leishmania major} SCOP: d.25.1.1 No DOI found.
PVCunit1_18 PAU_02806 PAU_02792 1t6u 1t6u_A 24.5 31 0.0008 28.1 >1t6u_A Superoxide dismutase [NI]; nickel, 4-helix bundle, hexamer, nisod, SOD, high resolution, oxidoreductase; 1.30A {Streptomyces coelicolor} SCOP: a.24.22.1 PDB: 1t6q_A 1t6i_A 3g4z_A 3g4x_A 4ncq_A 3g50_A 1q0g_A 1q0f_A 1q0d_A 1q0k_A 1q0m_A 10.1021/bi0496081
PVCunit1_19 PAU_02807 PAU_02793 3kx6 3kx6_A 19.7 45 0.0012 31.3 >3kx6_A Fructose-bisphosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, glycolysis, lyase, STRU genomics; HET: CIT; 2.10A {Babesia bovis} No DOI found.
PVCunit1_20 PAU_02808 PAU_02794 1vyy 1vyy_A 99.9 8.9e-33 2.3e-37 218.9 >1vyy_A Lectin; sugar-binding protein, D-mannose, plant pathogen; HET: BMA MAN; 1.00A {Ralstonia solanacearum} PDB: 1uqx_A* 2chh_A* Key error. ID likely deprecated.
PVCpnf_1 PAK_3544 PAK_03203 3eaa 3eaa_A 78.5 0.66 1.7e-05 32.1 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVCpnf_2 PAK_3543 PAK_03202 3j9q 3j9q_A 100.0 3e-34 7.9e-39 242.5 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCpnf_3 PAK_3542 PAK_03201 3j9q 3j9q_A 99.9 8.7e-33 2.3e-37 239.9 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCpnf_4 PAK_3541 PAK_03200 3j9q 3j9q_A 99.9 7.1e-27 1.8e-31 200.5 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCpnf_5 PAK_3540 PAK_03199 3eaa 3eaa_A 92.6 0.018 4.7e-07 40.1 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVCpnf_6 PAK_3539 PAK_03198 4aaa 4aaa_A 78.2 0.68 1.8e-05 28.3 >4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A* No DOI found.
PVCpnf_7 PAK_3538 PAK_03197 1pp0 1pp0_A 18.8 48.0 0.0013 26.7 >1pp0_A Volvatoxin A2; ingot crystal form; 1.42A {Volvariella volvacea} SCOP: d.103.1.1 PDB: 1pp6_A 1vgf_A 1vcy_A 10.1016/j.jmb.2004.08.045
PVCpnf_8 PAK_3537 PAK_03196 4uhv 4uhv_A 99.9 9.9e-29 2.6e-33 236.3 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVCpnf_9 PAK_3536 PAK_03195 2ia7 2ia7_A 99.7 1.5e-21 3.9e-26 129.9 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCpnf_10 PAK_3535 PAK_03194 1ukf 1ukf_A 77.5 0.75 1.9e-05 35.1 >1ukf_A Avirulence protein AVRPPH3; AVRPPHB, hypersensitive response, hydrolase; 1.35A {Pseudomonas syringae PV} SCOP: d.3.1.10 10.1073/pnas.2036536100
PVCpnf_11 PAK_3534 PAK_03193 3h2t 3h2t_A 96.8 8.4e-06 2.2e-10 80.7 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCpnf_12 PAK_3533 PAK_03192 2jpf 2jpf_A 32.7 18.0 0.00046 34.1 >2jpf_A Hypothetical protein; all alpha helical protein, type III secretion effector protein, structural genomics; NMR {Bordetella parapertussis} No DOI found.
PVCpnf_13 PAK_3532 PAK_03191 2xgf 2xgf_A 97.8 4e-08 1.1e-12 86.2 >2xgf_A Long tail fiber protein P37; viral protein; 2.20A {Enterobacteria phage T4} 10.1073/pnas.1011218107
PVCpnf_14 PAK_3531 PAK_03190 3fx7 3fx7_A 45.3 8.3 0.00022 28.7 >3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} PDB: 2gts_A 10.1093/jb/mvp098
PVCpnf_15 PAK_3530 PAK_03189 5g4f 5g4f_A 99.9 7e-27 1.8e-31 225.6 >5g4f_A VCP-like ATPase; hydrolase, VAT, proteasome, protein dynamics, unfoldase, conformations, AAA ATPase; 7.00A {Thermoplasma acidophilum} PDB: 5g4g_A 1cz4_A 1cz5_A 10.1073/pnas.1603980113
PVCpnf_16 PAK_3529 PAK_03188 3t5s 3t5s_A 61.4 3 7.9e-05 30.2 >3t5s_A Gilaa.00834.A, macrophage migration inhibitory factor; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Giardia lamblia} 10.1007/s10969-013-9155-9
PVCpnf_17 PAK_3527 PAK_03187 4ae8 4ae8_A 59.8 3.4 8.8e-05 27.4 >4ae8_A Thioesterase superfamily member 4; hydrolase, hotdog-fold; 1.59A {Homo sapiens} PDB: 4gah_A* 10.1128/MCB.00312-12
PVCpnf_18 PAK_3526 PAK_03186 3fxq 3fxq_A 99.7 2.7e-21 7e-26 122.2 >3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A* 10.1111/j.1365-2958.2010.07043.x
PVCpnf_19 PAK_3525 PAK_03185 4mix 4mix_A 100.0 5e-35 1.3e-39 251.4 >4mix_A Putative insecticidal toxin; tyrosine glycosylation, UDP-GLCNAC, nucleotide-binding domai rossmann-like, glycosyltransferase; HET: MSE UD1; 1.80A {Photorhabdus asymbiotica subsp} 10.1038/nsmb.2688
PVCpnf_20 PAK_3524 PAK_03184 1xju 1xju_A 99.4 4.1e-17 1.1e-21 98.8 >1xju_A Lysozyme; secreted inactive conformation, hydrolase; 1.07A {Enterobacteria phage P1} SCOP: d.2.1.3 10.1126/science.1105143
PVCpnf_21 PAK_3523 PAK_03183 3hdf 3hdf_A 99.7 1.5e-22 3.8e-27 125.9 >3hdf_A Lysozyme; antimicrobial, bacteriolytic enzyme, glycosid hydrolase, late protein; 1.70A {Enterobacteria phage P21} 10.1038/nsmb.1681
PVCpnf_22 PAK_3522 PAK_03182 1l8d 1l8d_A 69.1 1.7 4.4e-05 28.9 >1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1 10.1038/nature00922
PVCpnf_23 PAK_3521 PAK_03181 3hdf 3hdf_A 100.0 1.8e-42 4.7e-47 232.0 >3hdf_A Lysozyme; antimicrobial, bacteriolytic enzyme, glycosid hydrolase, late protein; 1.70A {Enterobacteria phage P21} 10.1038/nsmb.1681
PVCcif_1 PAK_1969 PAK_01787 3jqo 3jqo_B 40.9 11 0.00028 26.9 >3jqo_B TRAO protein; helical outer membrane TM, outer membrane protein complex, T protein; HET: LDA; 2.60A {Escherichia coli} PDB: 3zbi_B 2ofq_A 10.1038/nature08588
PVCcif_2 PAK_1970 PAK_01788 3j9q 3j9q_A 100.0 3.7e-34 9.7e-39 242.8 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCcif_3 PAK_1971 PAK_01789 3j9q 3j9q_A 99.9 1.8e-31 4.8e-36 234.4 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCcif_4 PAK_1972 PAK_01790 3j9q 3j9q_A 99.9 3.9e-27 1e-31 202.0 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCcif_5 PAK_1973 PAK_01791 4tv4 4tv4_A 40.1 11 0.0003 27.1 >4tv4_A Uncharacterized protein; unknown function, ssgcid, virulence, structural genomics; 2.10A {Burkholderia pseudomallei} No DOI found.
PVCcif_6 PAK_1974 PAK_01792 3rjr 3rjr_A 53.8 5 0.00013 26.1 >3rjr_A Transforming growth factor beta-1; TGF beta, activation, integrin, cytokine; HET: NAG; 3.05A {Sus scrofa} 10.1038/nature10152
PVCcif_7 PAK_1975 PAK_01793 5a3a 5a3a_A 50.8 6 0.00016 31.4 >5a3a_A SIR2 family protein; transferase, P-ribosyltransferase, metalloprotein, NAD-depen lipoylation, regulatory enzyme, rossmann fold; 1.54A {Streptococcus pyogenes} PDB: 5a3b_A* 5a3c_A* 10.1016/j.molcel.2015.06.013
PVCcif_8 PAK_1976 PAK_01794 4uhv 4uhv_A 99.9 4.6e-28 1.2e-32 231.4 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVCcif_9 PAK_1977 PAK_01795 2ia7 2ia7_A 99.7 9.7e-22 2.5e-26 131.7 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCcif_10 PAK_1978 PAK_01796 2k4r 2k4r_A 37.5 13 0.00035 21.5 >2k4r_A Neurotrypsin; kringle domain, disulfide-rich protein fold, serine endopeptidase, hydrolase, extracellular proteolysis; NMR {Rattus norvegicus} PDB: 2k51_A 10.1021/bi800555z
PVCcif_11 PAK_1979 PAK_01797 3h2t 3h2t_A 96.1 0.00012 3.2e-09 74.0 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCcif_12 PAK_1980 PAK_01798 5efx 5efx_A 68.5 1.8 4.6e-05 36.3 >5efx_A RHO guanine nucleotide exchange factor 2; RHO GTPase, activity, signaling protein; 2.45A {Homo sapiens} 10.1016/j.bbrc.2016.01.150
PVCcif_13 PAK_1981 PAK_01799 1ocy 1ocy_A 98.3 5.2e-10 1.4e-14 89.6 >1ocy_A Bacteriophage T4 short tail fibre; structural protein, fibrous protein, LIPO-polysaccharide binding, bacteriophage structural protein; HET: CIT; 1.5A {Bacteriophage T4} SCOP: d.231.1.1 10.1016/S0022-2836(03)00755-1
PVCcif_14 PAK_1982 PAK_01800 1tuz 1tuz_A 21.4 39.0 0.001 26.1 >1tuz_A Diacylglycerol kinase alpha; transferase, HR532, nesgc, structural genomics, PSI, protein structure initiative; NMR {Homo sapiens} SCOP: a.39.1.7 No DOI found.
PVCcif_15 PAK_1983 PAK_01801 5e7p 5e7p_A 99.8 5.5e-25 1.4e-29 222.7 >5e7p_A Cell division control protein CDC48; AAA ATPase, M. smegmatic, RECA, hydrolase; HET: ADP PG4 PGE; 2.51A {Mycobacterium smegmatis} 10.1128/JB.00905-15
PVCcif_16 PAK_1984 PAK_01802 3fxd 3fxd_B 34.1 16 0.00043 28.1 >3fxd_B Protein ICMR; helix bundle, helix-turn-helix, unknown function; 2.10A {Legionella pneumophila subsp} PDB: 3fxe_B 10.1016/j.str.2009.02.011
PVCcif_17 PAK_1985 PAK_01803 4fbj 4fbj_A 100.0 2.4e-91 6.3e-96 618.6 >4fbj_A CIF, hypothetical protein; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Photorhabdus luminescens subsp} PDB: 3gqj_A No DOI found.
PVCcif_18 PAK_1986 PAK_01804 3r2n 3r2n_A 31.0 20 0.00052 26.9 >3r2n_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.30A {Mycobacterium leprae} 10.1016/j.tube.2014.12.003
PVCcif_19 PAK_1987 PAK_01805 5ewy 5ewy_A 97.3 6.2e-07 1.6e-11 74.4 >5ewy_A Putative ADP-ribosyltransferase scabin; inhibitor, transferase-transferase inhibitor CO; HET: 5TQ; 1.40A {Streptomyces scabiei 87} PDB: 5ewk_A* 10.1074/jbc.M115.707653
PVCcif_20 PAK_1988 PAK_01806 2hxj 2hxj_A 74.1 1.1 2.8e-05 35.9 >2hxj_A Hypothetical protein; APC83807, structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.21A {Neisseria meningitidis MC58} SCOP: a.136.1.1 PDB: 3mw6_A Key error. ID likely deprecated.
PVClumt_1 PAK_2216 PAK_02014 3eaa 3eaa_A 69.3 1.7 4.3e-05 30.1 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVClumt_2 PAK_2215 PAK_02013 3j9q 3j9q_A 99.6 1.4e-19 3.6e-24 154.2 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClumt_3 PAK_2214 PAK_02012 3j9q 3j9q_A 98.2 1.5e-09 3.9e-14 75.6 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClumt_4 PAK_2213 PAK_02011 3j9q 3j9q_A 99.9 7.2e-29 1.9e-33 212.0 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClumt_5 PAK_2212 PAK_02010 3eaa 3eaa_A 72.5 1.2 3.3e-05 30.9 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVClumt_6 PAK_2211 PAK_02009 1use 1use_A 68.7 1.7 4.5e-05 24.0 >1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A 10.1073/pnas.0403069101
PVClumt_7 PAK_2210 PAK_02008 4v2x 4v2x_A 33.0 17.0 0.00046 31.3 >4v2x_A Endo-beta-1,4-glucanase (cellulase B); hydrolase, TRI-modular; 1.64A {Bacillus halodurans} 10.1074/jbc.M115.637827
PVClumt_8 PAK_2209 PAK_02007 2p5z 2p5z_X 99.7 1.5e-21 3.8e-26 177.2 >2p5z_X Type VI secretion system component; structural genomics, unknown function, PSI-2, protein struct initiative; 2.60A {Escherichia coli O6} SCOP: b.40.8.1 b.106.1.1 b.106.1.1 10.1073/pnas.0813360106
PVClumt_9 PAK_2208 PAK_02006 2ia7 2ia7_A 99.7 6.7e-22 1.7e-26 132.6 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVClumt_10 PAK_2207 PAK_02005 3ull 3ull_A 58.1 3.8 9.8e-05 26.7 >3ull_A DNA binding protein; DNA replication, mitochondrion, transit peptide; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 PDB: 1s3o_A* 2dud_A 10.1038/nsb0297-153
PVClumt_11 PAK_2206 PAK_02004 2kcp 2kcp_A 37.9 13 0.00034 29.9 >2kcp_A 30S ribosomal protein S8E; RPS8E, beta, NESG, ribonucleoprotein, structural genomics, PSI-2; NMR {Methanothermobacter thermautotrophicusstr} PDB: 2kcy_A No DOI found.
PVClumt_12 PAK_2205 PAK_02003 3h2t 3h2t_A 96.2 8.2e-05 2.1e-09 63.5 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVClumt_13 PAK_2204 PAK_02002 1yo5 1yo5_C 39.0 12 0.00032 32.1 >1yo5_C SAM pointed domain containing ETS transcription factor; protein-DNA complex, double helix, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.4.5.21 10.1021/bi047352t
PVClumt_14 PAK_2203 PAK_02001 1v1h 1v1h_A 95.3 0.00092 2.4e-08 49.5 >1v1h_A Fibritin, fiber protein; chimera; 1.9A {Human adenovirus type 2} SCOP: b.83.1.1 h.1.17.1 PDB: 1v1i_A 10.1016/j.jmb.2004.07.008
PVClumt_15 PAK_2202 PAK_02000 1osn 1osn_A 25.9 28 0.00073 33.2 >1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1 10.1074/jbc.M302025200
PVClumt_16 PAK_2201 PAK_01999 4uid 4uid_A 64.8 2.4 6.2e-05 31.5 >4uid_A S-layer SBSC, surface layer protein; sugar binding protein, G. stearothermophilus; 2.80A {Geobacillus stearothermophilus} No DOI found.
PVClumt_17 PAK_2200 PAK_01998 3k8p 3k8p_C 34.7 16.0 0.00041 34.1 >3k8p_C DSL1, KLLA0C02695P; intracellular trafficking, DSL1 complex, multisubunit tethering complex, snare proteins; 2.60A {Kluyveromyces lactis} 10.1016/j.cell.2009.11.002
PVClumt_18 PAK_2199 PAK_01997 5ftj 5ftj_A 99.9 1.6e-26 4.2e-31 229.2 >5ftj_A Transitional endoplasmic reticulum ATPase; hydrolase, single-particle, AAA ATPase; HET: ADP OJA; 2.30A {Homo sapiens} PDB: 3cf1_A* 3cf3_A* 3cf2_A* 5ftk_A* 5ftl_A* 5ftm_A* 5ftn_A* 1r7r_A* 5c19_A 5c1b_A* 5c18_A* 3cf0_A* 10.1126/science.aad7974
PVClumt_19 PAK_2198 PAK_01996 3lfh 3lfh_A 39.5 12 0.00031 28.9 >3lfh_A Manxa, phosphotransferase system, mannose/fructose-speci component IIA; PTS; 1.80A {Thermoanaerobacter tengcongensis} No DOI found.
PVClumt_20 PAK_2197 PAK_01995 1wrd 1wrd_A 43.2 9.4 0.00025 32.8 >1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1 PDB: 2n2n_A 10.1016/j.febslet.2005.08.076
PVClumt_21 PAK_2195 PAK_01994 4mix 4mix_A 100.0 8.9e-44 2.3e-48 348.7 >4mix_A Putative insecticidal toxin; tyrosine glycosylation, UDP-GLCNAC, nucleotide-binding domai rossmann-like, glycosyltransferase; HET: MSE UD1; 1.80A {Photorhabdus asymbiotica subsp} 10.1038/nsmb.2688
PVClopT_1 PAK_2092 PAK_01896 3eaa 3eaa_A 82.2 0.39 1e-05 33.1 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVClopT_2 PAK_2091 PAK_01895 3j9q 3j9q_A 100.0 2.5e-35 6.4e-40 248.6 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClopT_3 PAK_2090 PAK_01894 3j9q 3j9q_A 99.9 1.8e-29 4.6e-34 215.9 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClopT_4 PAK_2089 PAK_01893 3eaa 3eaa_A 64.9 2.3 6.1e-05 29.4 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVClopT_5 PAK_2088 PAK_01892 2v1l 2v1l_A 26.7 26 0.00069 22.5 >2v1l_A Hypothetical protein; pathogenicity island, unknown function; 2.13A {Vibrio cholerae} 10.1002/prot.21993
PVClopT_6 PAK_2087 PAK_01891 3zo0 3zo0_A 61.8 2.9 7.7e-05 27.8 >3zo0_A IG gamma-2A chain C region, A allele; immune system-ligase complex; HET: NAG BMA MAN GAL FUC; 1.99A {Mus musculus} PDB: 2rgs_A* 10.1073/pnas.0800159105
PVClopT_7 PAK_2086 PAK_01890 4uhv 4uhv_A 99.9 8.4e-29 2.2e-33 236.5 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVClopT_8 PAK_2085 PAK_01889 2ia7 2ia7_A 99.8 2.2e-23 5.8e-28 137.0 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVClopT_9 PAK_2084 PAK_01888 3ojo 3ojo_A 69.6 1.6 4.2e-05 34.0 >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* 10.1074/jbc.M110.216002
PVClopT_10 PAK_2083 PAK_01887 3h2t 3h2t_A 96.8 9.7e-06 2.5e-10 85.1 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVClopT_11 PAK_2082 PAK_01886 1ip9 1ip9_A 49.1 6.6 0.00017 31.0 >1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A 10.1093/emboj/20.15.3947
PVClopT_12 PAK_2081 PAK_01885 1nvp 1nvp_B 34.5 16 0.00042 26.7 >1nvp_B Transcription initiation factor IIA alpha chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: a.32.1.1 PDB: 5fur_B* 10.1016/S0022-2836(03)00887-8
PVClopT_13 PAK_2080 PAK_01884 5e7p 5e7p_A 99.8 4.3e-26 1.1e-30 230.6 >5e7p_A Cell division control protein CDC48; AAA ATPase, M. smegmatic, RECA, hydrolase; HET: ADP PG4 PGE; 2.51A {Mycobacterium smegmatis} 10.1128/JB.00905-15
PVClopT_14 PAK_2079 PAK_01883 4x8k 4x8k_B 31.6 19.0 0.0005 28.0 >4x8k_B RNA polymerase-binding protein RBPA, RNA polymerase sigma factor SIGA; transcription activator; HET: EDO; 2.20A {Mycobacterium tuberculosis} PDB: 2m6p_A 10.1073/pnas.1504942112
PVClopT_15 PAK_2078 PAK_01882 2l1n 2l1n_A 52.8 5.3 0.00014 27.8 >2l1n_A Uncharacterized protein; DUF1823, hypothetical protein, cyanobacteria, structural GEN PSI-biology, protein structure initiative; NMR {Synechococcus elongatus} No DOI found.
PVClopT_16 PAK_2077 PAK_01881 1ukf 1ukf_A 99.8 2.5e-25 6.6e-30 187.7 >1ukf_A Avirulence protein AVRPPH3; AVRPPHB, hypersensitive response, hydrolase; 1.35A {Pseudomonas syringae PV} SCOP: d.3.1.10 10.1073/pnas.2036536100
PVClopT_17 PAK_2075 PAK_01880 1t3c 1t3c_A 93.5 0.0089 2.3e-07 65.9 >1t3c_A Neurotoxin type E; catalytic domain, E212Q mutant, light chain, hydrolase; 1.90A {Clostridium botulinum} SCOP: d.92.1.7 PDB: 3d3x_A 1t3a_A 1zl5_A 1zl6_A 1zn3_A 1zkw_A 1zkx_A 10.1021/bi036278w
PVCunit1_1 PAK_2876 PAK_02606 3eaa 3eaa_A 73.2 1.2 3.1e-05 30.8 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVCunit1_2 PAK_2877 PAK_02607 3j9q 3j9q_A 100.0 3.8e-34 1e-38 242.1 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit1_3 PAK_2878 PAK_02608 3j9q 3j9q_A 100.0 6.9e-34 1.8e-38 247.8 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit1_4 PAK_2879 PAK_02609 3j9q 3j9q_A 99.9 6.1e-30 1.6e-34 219.4 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit1_5 PAK_2880 PAK_02610 4tv4 4tv4_A 63.0 2.7 7e-05 30.4 >4tv4_A Uncharacterized protein; unknown function, ssgcid, virulence, structural genomics; 2.10A {Burkholderia pseudomallei} No DOI found.
PVCunit1_6 PAK_2881 PAK_02611 4yci 4yci_A 66.4 2.1 5.4e-05 26.8 >4yci_A Bone morphogenetic protein 9 growth factor domain; Pro-BMP complex, transforming growth factor-beta cytokine; HET: NAG; 3.25A {Mus musculus} PDB: 4ycg_A* 10.1073/pnas.1501303112
PVCunit1_7 PAK_2882 PAK_02612 5a3a 5a3a_A 54.5 4.8 0.00012 32.0 >5a3a_A SIR2 family protein; transferase, P-ribosyltransferase, metalloprotein, NAD-depen lipoylation, regulatory enzyme, rossmann fold; 1.54A {Streptococcus pyogenes} PDB: 5a3b_A* 5a3c_A* 10.1016/j.molcel.2015.06.013
PVCunit1_8 PAK_2883 PAK_02613 4uhv 4uhv_A 99.9 2.4e-30 6.4e-35 247.1 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVCunit1_9 PAK_2884 PAK_02614 2ia7 2ia7_A 99.7 1e-21 2.6e-26 131.7 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCunit1_10 PAK_2885 PAK_02615 1ngv 1ngv_A 43.2 9.4 0.00025 31.0 >1ngv_A Amyloid beta precursor protein-binding protein 1; signaling protein; 2.60A {Homo sapiens} PDB: 3gzn_A* 1yov_A 2nvu_A* 1r4m_A 1r4n_A* 1tt5_A 3dbh_A 3dbl_A 3dbr_A Key error. ID likely deprecated.
PVCunit1_11 PAK_2886 PAK_02616 3h2t 3h2t_A 96.6 1.9e-05 4.9e-10 79.9 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCunit1_12 PAK_2887 PAK_02617 1s5u 1s5u_A 40.5 11 0.00029 29.0 >1s5u_A Protein YBGC; structural genomics, hypothetical protein, thioesterase fold, PSI, protein structure initiative; 1.70A {Escherichia coli} SCOP: d.38.1.1 PDB: 5kl9_A* 5t07_A* 5t06_A* No DOI found.
PVCunit1_13 PAK_2888 PAK_02618 3izo 3izo_F 98.9 5.7e-13 1.5e-17 133.9 >3izo_F Fiber; pentameric penton base, trimeri viral protein; 3.60A {Human adenovirus 5} 10.1016/j.jmb.2010.11.043
PVCunit1_14 PAK_2889 PAK_02619 1ojh 1ojh_A 20.8 41.0 0.0011 26.2 >1ojh_A NBLA; degradation protein, phycobilisome degradation, protein BIND; HET: MSE; 1.80A {Anabaena SP} SCOP: a.214.1.1 10.1074/jbc.M507243200
PVCunit1_15 PAK_2890 PAK_02620 5e7p 5e7p_A 99.9 1.8e-26 4.6e-31 233.6 >5e7p_A Cell division control protein CDC48; AAA ATPase, M. smegmatic, RECA, hydrolase; HET: ADP PG4 PGE; 2.51A {Mycobacterium smegmatis} 10.1128/JB.00905-15
PVCunit1_16 PAK_2891 PAK_02621 5fvk 5fvk_C 25.4 29.0 0.00076 20.8 >5fvk_C VFA1, VPS4-associated protein 1; hydrolase, MIT domain, yeast, ATPase; 1.66A {Saccharomyces cerevisiae} PDB: 4niq_C 10.1016/j.jmb.2016.04.007
PVCunit1_17 PAK_2892 PAK_02622 1cii 1cii_A 63.2 2.7 6.9e-05 41.7 >1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1 10.1038/385461a0
PVCunit1_18 PAK_2893 PAK_02623 3mfx 3mfx_A 51.3 5.8 0.00015 23.5 >3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis} No DOI found.
PVCunit1_19 PAK_2894 PAK_02624 3fnb 3fnb_A 74.6 1.0 2.7e-05 35.5 >3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix bundle, structural genomics protein structure initiative; HET: PGE; 2.12A {Streptococcus mutans} No DOI found.
PVCunit1_20 PAK_2895 PAK_02625 1ocy 1ocy_A 97.2 1.6e-06 4.1e-11 65.1 >1ocy_A Bacteriophage T4 short tail fibre; structural protein, fibrous protein, LIPO-polysaccharide binding, bacteriophage structural protein; HET: CIT; 1.5A {Bacteriophage T4} SCOP: d.231.1.1 10.1016/S0022-2836(03)00755-1
PVCunit1_21 PAK_2896 PAK_02626 1vyy 1vyy_A 100.0 5.8e-35 1.5e-39 231.2 >1vyy_A Lectin; sugar-binding protein, D-mannose, plant pathogen; HET: BMA MAN; 1.00A {Ralstonia solanacearum} PDB: 1uqx_A* 2chh_A* Key error. ID likely deprecated.
PVCcif_1 plu2531 PLT_02568 3jqo 3jqo_B 47.2 7.4 0.00019 27.7 >3jqo_B TRAO protein; helical outer membrane TM, outer membrane protein complex, T protein; HET: LDA; 2.60A {Escherichia coli} PDB: 3zbi_B 2ofq_A 10.1038/nature08588
PVCcif_2 plu2530 PLT_02567 3j9q 3j9q_A 99.9 1.5e-31 4e-36 226.6 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCcif_3 plu2529 PLT_02566 3j9q 3j9q_A 100.0 3.8e-36 9.8e-41 262.4 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCcif_4 plu2528 PLT_02565 3j9q 3j9q_A 99.9 2.2e-28 5.7e-33 209.6 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCcif_5 plu2527 PLT_02564 4tv4 4tv4_A 68.0 1.8 4.8e-05 31.3 >4tv4_A Uncharacterized protein; unknown function, ssgcid, virulence, structural genomics; 2.10A {Burkholderia pseudomallei} No DOI found.
PVCcif_6 plu2526 PLT_02563 1use 1use_A 63.2 2.7 6.9e-05 23.2 >1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A 10.1073/pnas.0403069101
PVCcif_7 plu2525 PLT_02562 4bs6 4bs6_A 22.6 35 0.00092 24.5 >4bs6_A Cathepsin S; hydrolase, cysteine protease, covalent ligand; HET: JG7; 1.20A {Mus musculus} PDB: 4bpv_A* 4bqv_A* 4bs5_A* 4bsq_A* 4mzo_A* 4mzs_A* 4p6e_A* 2h7j_A* 2f1g_A* 2hh5_B* 2hhn_A* 2hxz_A* 2op3_A* 1ms6_A* 2r9m_A* 2r9n_A* 2r9o_A* 3n3g_A* 3n4c_A* 4p6g_A* 3ovx_A* 2frq_A* 2fra_A* 2fq9_A* 2ft2_A* 2fud_A* 2g7y_A* 1nqc_A* 1npz_A* 2g6d_A* ... No DOI found.
PVCcif_8 plu2524 PLT_02561 4uhv 4uhv_A 99.9 3.3e-27 8.6e-32 225.6 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVCcif_9 plu2523 PLT_02560 2ia7 2ia7_A 99.8 5.4e-25 1.4e-29 146.2 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCcif_10 plu2522 PLT_02559 4jiw 4jiw_D 77.4 0.75 2e-05 28.8 >4jiw_D C1882, putative uncharacterized protein; PAAR-repeat motif, membrane piercing, type VI secretion SYST spike, cell puncturing device, beta-helix; 3.40A {Escherichia coli} 10.1038/nature12453
PVCcif_11 plu2521 PLT_02558 3h2t 3h2t_A 96.6 2.6e-05 6.7e-10 79.0 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCcif_12 plu2520 PLT_02557 1fho 1fho_A 64.0 2.5 6.5e-05 33.9 >1fho_A UNC-89; pleckstrin homology domain, electrostatics, muscle, signal transduction, signaling protein; NMR {Caenorhabditis elegans} SCOP: b.55.1.1 10.1016/S0969-2126(00)00509-8
PVCcif_13 plu2519 PLT_02556 2xgf 2xgf_A 96.8 1.2e-05 3e-10 70.6 >2xgf_A Long tail fiber protein P37; viral protein; 2.20A {Enterobacteria phage T4} 10.1073/pnas.1011218107
PVCcif_14 plu2518 PLT_02555 3b1j 3b1j_C 41.9 10 0.00027 26.0 >3b1j_C CP12; alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_C* 10.1016/j.str.2011.08.016
PVCcif_15 plu2517 PLT_02554 5e7p 5e7p_A 99.9 3.4e-27 8.9e-32 238.8 >5e7p_A Cell division control protein CDC48; AAA ATPase, M. smegmatic, RECA, hydrolase; HET: ADP PG4 PGE; 2.51A {Mycobacterium smegmatis} 10.1128/JB.00905-15
PVCcif_16 plu2516 PLT_02553 1u1j 1u1j_A 39.0 12 0.00032 35.6 >1u1j_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; methionine, synthase, methyltetrahydrofolate; HET: C2F; 2.40A {Arabidopsis thaliana} SCOP: c.1.22.2 c.1.22.2 PDB: 1u1h_A* 1u1u_A 1u22_A* 10.1074/jbc.C400325200
PVCcif_17 plu2515 PLT_02552 4fbj 4fbj_A 100.0 3e-109 7e-114 735.1 >4fbj_A CIF, hypothetical protein; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Photorhabdus luminescens subsp} PDB: 3gqj_A No DOI found.
PVCcif_18 plu2514 PLT_02551 3wmi 3wmi_B 20.6 41 0.0011 24.0 >3wmi_B EIAV GP45 wild type; alpha-helix, virus fusion, viral protein; 1.90A {Equine} PDB: 3wmj_B No DOI found.
PVClopT_1 plu2385 PLT_02424 3eaa 3eaa_A 82.7 0.37 9.5e-06 33.4 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVClopT_2 plu2386 PLT_02425 3j9q 3j9q_A 99.9 4.2e-33 1.1e-37 235.7 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClopT_3 plu2387 PLT_02426 3j9q 3j9q_A 100.0 4.1e-34 1.1e-38 247.2 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClopT_4 plu2388 PLT_02427 3j9q 3j9q_A 99.9 5.2e-31 1.3e-35 225.1 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClopT_5 plu2389 PLT_02428 4tv4 4tv4_A 66.1 2.1 5.6e-05 30.9 >4tv4_A Uncharacterized protein; unknown function, ssgcid, virulence, structural genomics; 2.10A {Burkholderia pseudomallei} No DOI found.
PVClopT_6 plu2390 PLT_02429 4zmk 4zmk_A 51.9 5.6 0.00015 24.7 >4zmk_A Telomere length regulator TAZ1; dimerization domain, fission yeast, DNA binding PR; 1.50A {Schizosaccharomyces pombe} 10.1038/cr.2015.76
PVClopT_7 plu2391 PLT_02430 5a3a 5a3a_A 48.7 6.8 0.00018 31.1 >5a3a_A SIR2 family protein; transferase, P-ribosyltransferase, metalloprotein, NAD-depen lipoylation, regulatory enzyme, rossmann fold; 1.54A {Streptococcus pyogenes} PDB: 5a3b_A* 5a3c_A* 10.1016/j.molcel.2015.06.013
PVClopT_8 plu2392 PLT_02431 4uhv 4uhv_A 99.9 3.8e-31 1e-35 252.7 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVClopT_9 plu2393 PLT_02432 2ia7 2ia7_A 99.8 1.1e-23 2.7e-28 140.3 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVClopT_10 plu2394 PLT_02433 4jiw 4jiw_D 61.0 3.1 8.1e-05 26.0 >4jiw_D C1882, putative uncharacterized protein; PAAR-repeat motif, membrane piercing, type VI secretion SYST spike, cell puncturing device, beta-helix; 3.40A {Escherichia coli} 10.1038/nature12453
PVClopT_11 plu2395 PLT_02434 3h2t 3h2t_A 97.5 2.7e-07 7.1e-12 96.6 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVClopT_12 plu2396 PLT_02435 1pqx 1pqx_A 49.6 6.5 0.00017 33.3 >1pqx_A Conserved hypothetical protein; ZR18,structure, autostructure,spins,autoassign, northeast structural genomics consortium; NMR {Staphylococcus aureus subsp} SCOP: d.267.1.1 PDB: 2ffm_A 2m6q_A 2m8w_A No DOI found.
PVClopT_13 plu2397 PLT_02436 2j9w 2j9w_A 27.5 25 0.00065 28.7 >2j9w_A VPS28, VPS28-PROV protein; NZF finger, HIV budding, protein transport; 1.30A {Xenopus laevis} 10.1038/sj.emboj.7601501
PVClopT_14 plu2398 PLT_02437 5e7p 5e7p_A 99.9 4.6e-27 1.2e-31 237.8 >5e7p_A Cell division control protein CDC48; AAA ATPase, M. smegmatic, RECA, hydrolase; HET: ADP PG4 PGE; 2.51A {Mycobacterium smegmatis} 10.1128/JB.00905-15
PVClopT_15 plu2399 PLT_02438 3b33 3b33_A 21.2 40.0 0.001 18.4 >3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633} No DOI found.
PVClopT_16 plu2400 PLT_02439 2ebf 2ebf_X 100.0 1.6e-85 4.1e-90 674.4 >2ebf_X Dermonecrotic toxin; pasteurella multocida toxin, trojan horse-like fold; HET: TRE; 1.90A {Pasteurella multocida} SCOP: a.296.1.1 c.150.1.2 d.3.1.17 PDB: 2ec5_A 2ebh_X* 10.1073/pnas.0608197104
PVClopT_17 plu2401 PLT_02440 1ukf 1ukf_A 99.8 1.6e-25 4.2e-30 188.8 >1ukf_A Avirulence protein AVRPPH3; AVRPPHB, hypersensitive response, hydrolase; 1.35A {Pseudomonas syringae PV} SCOP: d.3.1.10 10.1073/pnas.2036536100
PVCunit1_1 plu1730 PLT_01758 3eaa 3eaa_A 77.0 0.79 2.1e-05 31.7 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVCunit1_2 plu1729 PLT_01757 3j9q 3j9q_A 100.0 2.6e-35 6.7e-40 248.9 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit1_3 plu1728 PLT_01756 3j9q 3j9q_A 100.0 8.6e-34 2.2e-38 247.3 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit1_4 plu1727 PLT_01755 3j9q 3j9q_A 99.9 2.5e-29 6.6e-34 215.0 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit1_5 plu1726 PLT_01754 3eaa 3eaa_A 82.2 0.39 1e-05 33.3 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVCunit1_6 plu1725 PLT_01753 1use 1use_A 58.6 3.7 9.6e-05 22.6 >1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A 10.1073/pnas.0403069101
PVCunit1_7 plu1724 PLT_01752 1avo 1avo_B 32.8 18 0.00046 27.2 >1avo_B 11S regulator; proteasome activator, cell adhesion, interferon induction; 2.80A {Homo sapiens} SCOP: a.24.8.1 10.1038/37670
PVCunit1_8 plu1723 PLT_01751 4uhv 4uhv_A 99.9 4e-29 1e-33 238.8 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVCunit1_9 plu1722 PLT_01750 2ia7 2ia7_A 99.2 2.9e-15 7.7e-20 106.9 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCunit1_10 plu1721 PLT_01749 2fwm 2fwm_X 33.8 17 0.00043 23.1 >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossmann fold, chorismate metabolism, short-CH oxidoreductase, tetramer; 2.00A {Escherichia coli} 10.1107/S0907444906015824
PVCunit1_11 plu1720 PLT_01748 3h2t 3h2t_A 96.0 0.00015 4e-09 73.4 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCunit1_12 plu1719 PLT_01747 1pqx 1pqx_A 53.4 5.1 0.00013 33.8 >1pqx_A Conserved hypothetical protein; ZR18,structure, autostructure,spins,autoassign, northeast structural genomics consortium; NMR {Staphylococcus aureus subsp} SCOP: d.267.1.1 PDB: 2ffm_A 2m6q_A 2m8w_A No DOI found.
PVCunit1_13 plu1718 PLT_01746 1ocy 1ocy_A 98.0 9.6e-09 2.5e-13 86.7 >1ocy_A Bacteriophage T4 short tail fibre; structural protein, fibrous protein, LIPO-polysaccharide binding, bacteriophage structural protein; HET: CIT; 1.5A {Bacteriophage T4} SCOP: d.231.1.1 10.1016/S0022-2836(03)00755-1
PVCunit1_14 plu1717 PLT_01745 5l3x 5l3x_B 17.9 52.0 0.0013 32.1 >5l3x_B Negative elongation factor C/D; transcription, repressor, transcription regulation, gene EXP; 2.75A {Homo sapiens} 10.7554/eLife.14981
PVCunit1_15 plu1716 PLT_01744 5e7p 5e7p_A 99.8 2.9e-25 7.6e-30 224.7 >5e7p_A Cell division control protein CDC48; AAA ATPase, M. smegmatic, RECA, hydrolase; HET: ADP PG4 PGE; 2.51A {Mycobacterium smegmatis} 10.1128/JB.00905-15
PVCunit1_16 plu1715 PLT_01743 1vwx 1vwx_f 22.5 36 0.00093 27.1 >1vwx_f Ribosomal protein EL33; mammalian, ribosome; 3.40A {Sus scrofa} PDB: 1vwz_f 1vx1_f 1vx4_f 3j3b_f 4cxd_f 4upx_f 4uq1_f 4w20_f 4w22_f 4w25_f 4w27_f Key error. ID likely deprecated.
PVCunit1_17 plu1714 PLT_01742 1eb6 1eb6_A 82.4 0.38 1e-05 31.5 >1eb6_A Neutral protease II; metalloproteinase, zinc, hydrolase; 1.0A {Aspergillus oryzae} SCOP: d.92.1.12 10.1107/S090744490101335X
PVCunit1_18 plu1713 PLT_01741 2hwn 2hwn_E 27.0 26 0.00068 21.9 >2hwn_E A kinase binding peptide; PKA, AKAP, dimerization/docking, D/D, regulatory subunit, TR; 1.60A {Rattus norvegicus} 10.1016/j.molcel.2006.09.015
PVCunit1_19 plu1712 PLT_01740 1yrt 1yrt_A 98.1 2.8e-09 7.3e-14 98.9 >1yrt_A Bifunctional hemolysin-adenylate cyclase; CYAA, layse, toxin; 2.10A {Bordetella pertussis} PDB: 1yru_A 1zot_A* 2col_A 10.1038/sj.emboj.7600800
PVCunit2_1 plu1708 PLT_01736 3eaa 3eaa_A 69.5 1.6 4.2e-05 30.1 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVCunit2_2 plu1707 PLT_01735 3j9q 3j9q_A 100.0 1.2e-33 3.2e-38 239.0 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit2_3 plu1706 PLT_01734 3j9q 3j9q_A 100.0 1.6e-34 4.3e-39 253.7 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit2_4 plu1705 PLT_01733 3j9q 3j9q_A 99.9 7.2e-30 1.9e-34 219.0 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit2_5 plu1704 PLT_01732 4etv 4etv_A 39.0 12 0.00032 27.6 >4etv_A Ryanodine receptor 2; phosphorylation, cardiac, metal transport; 1.65A {Mus musculus} 10.1016/j.str.2012.04.015
PVCunit2_6 plu1703 PLT_01731 4e71 4e71_A 53.7 5.0 0.00013 24.5 >4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens} No DOI found.
PVCunit2_7 plu1702 PLT_01730 5a3a 5a3a_A 64.0 2.5 6.6e-05 33.5 >5a3a_A SIR2 family protein; transferase, P-ribosyltransferase, metalloprotein, NAD-depen lipoylation, regulatory enzyme, rossmann fold; 1.54A {Streptococcus pyogenes} PDB: 5a3b_A* 5a3c_A* 10.1016/j.molcel.2015.06.013
PVCunit2_8 plu1701 PLT_01729 4uhv 4uhv_A 99.9 2.2e-30 5.8e-35 247.3 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVCunit2_9 plu1700 PLT_01728 2ia7 2ia7_A 99.7 1.1e-22 2.9e-27 138.2 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCunit2_10 plu1699 PLT_01727 2k4r 2k4r_A 34.4 16 0.00042 21.1 >2k4r_A Neurotrypsin; kringle domain, disulfide-rich protein fold, serine endopeptidase, hydrolase, extracellular proteolysis; NMR {Rattus norvegicus} PDB: 2k51_A 10.1021/bi800555z
PVCunit2_11 plu1698 PLT_01726 3h2t 3h2t_A 96.8 8e-06 2.1e-10 82.6 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCunit2_12 plu1697 PLT_01725 3sok 3sok_A 25.8 28.0 0.00073 29.3 >3sok_A Fimbrial protein; pilus subunit, extracellular, cell adhesion; 2.30A {Dichelobacter nodosus} 10.1074/jbc.M111.297242
PVCunit2_13 plu1696 PLT_01724 3izo 3izo_F 98.4 3.3e-10 8.5e-15 108.7 >3izo_F Fiber; pentameric penton base, trimeri viral protein; 3.60A {Human adenovirus 5} 10.1016/j.jmb.2010.11.043
PVCunit2_14 plu1695 PLT_01723 4u7b 4u7b_A 99.8 2e-23 5.3e-28 167.0 >4u7b_A Mariner MOS1 transposase; transposon synaptic complex, helix-turn-helix, like fold, DNA transposition, hydrolase-DNA complex; HET: DNA; 3.09A {Drosophila mauritiana} PDB: 4r79_A 3hos_A* 3hot_A 10.1093/nar/gkv096
PVCunit2_15 plu1694 PLT_01722 2mdp 2mdp_A 23.8 32.0 0.00085 28.7 >2mdp_A Gene 1.2 protein; dntpase inhibitor, viral protein; NMR {Enterobacteria phage T7} No DOI found.
PVCunit2_16 plu1693 PLT_01721 5e7p 5e7p_A 99.8 7.7e-26 2e-30 228.7 >5e7p_A Cell division control protein CDC48; AAA ATPase, M. smegmatic, RECA, hydrolase; HET: ADP PG4 PGE; 2.51A {Mycobacterium smegmatis} 10.1128/JB.00905-15
PVCunit2_17 plu1692 PLT_01720 3ggm 3ggm_A 54.2 4.9 0.00013 26.2 >3ggm_A Uncharacterized protein BT9727_2919; bacillus cereus group., structural genomics, PSI-2, protein structure initiative; 2.00A {Bacillus thuringiensis serovarkonkukian} No DOI found.
PVCunit2_18 plu1691 PLT_01719 3u8p 3u8p_A 21.9 37.0 0.00097 31.6 >3u8p_A Cytochrome B562 integral fusion with enhanced GRE fluorescent protein; directed evolution, domain insertion, energy transfer, fluor quenching; HET: CRO HEM; 2.75A {Aequorea victoria} 10.1021/ja301987h
PVCunit2_19 plu1690 PLT_01718 2rio 2rio_A 79.3 0.6 1.6e-05 29.0 >2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* 10.1016/j.cell.2007.10.057
PVCunit2_20 plu1689 PLT_01717 2lqt 2lqt_A 37.7 13 0.00034 28.2 >2lqt_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 7; CHCH domain, mitochondrial import, alpha-hairpin, MIA40-DEPE disulfide relay system; NMR {Homo sapiens} 10.1016/j.jsb.2012.07.007
PVCunit3_1 plu1689 PLT_01716 1l4i 1l4i_A 69.3 1.7 4.3e-05 30.5 >1l4i_A SFAE protein; periplasmic chaperone, immunoglobulin fold; 2.20A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 10.1107/S0907444902005954
PVCunit3_2 plu1688 PLT_01715 3j9q 3j9q_A 100.0 8.9e-34 2.3e-38 240.0 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit3_3 plu1687 PLT_01714 3j9q 3j9q_A 100.0 3.8e-34 1e-38 249.4 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit3_4 plu1686 PLT_01713 3j9q 3j9q_A 99.9 9.2e-29 2.4e-33 211.5 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit3_5 plu1685 PLT_01712 4tv4 4tv4_A 61.4 3.0 7.9e-05 30.2 >4tv4_A Uncharacterized protein; unknown function, ssgcid, virulence, structural genomics; 2.10A {Burkholderia pseudomallei} No DOI found.
PVCunit3_6 plu1684 PLT_01711 1x8d 1x8d_A 72.3 1.3 3.3e-05 26.0 >1x8d_A Hypothetical protein YIIL; mutarotase, L-rhamnose, biosynthetic protein; HET: RNS; 1.80A {Escherichia coli} SCOP: d.58.4.21 10.1016/j.jmb.2005.03.047
PVCunit3_7 plu1683 PLT_01710 1avo 1avo_B 30.8 20 0.00052 26.9 >1avo_B 11S regulator; proteasome activator, cell adhesion, interferon induction; 2.80A {Homo sapiens} SCOP: a.24.8.1 10.1038/37670
PVCunit3_8 plu1682 PLT_01709 4uhv 4uhv_A 99.9 9.8e-29 2.5e-33 236.1 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVCunit3_9 plu1681 PLT_01708 2ia7 2ia7_A 99.7 9e-21 2.4e-25 127.1 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCunit3_10 plu1680 PLT_01707 4rnd 4rnd_B 32.1 18 0.00048 24.5 >4rnd_B V-type proton ATPase subunit F; alpha helical, rossmann fold, hydrolase, regulatory, couplin; 3.18A {Saccharomyces cerevisiae S288C} PDB: 3j9u_N 3j9v_N 3j9t_N 5d80_o 10.1074/jbc.M114.622688
PVCunit3_11 plu1679 PLT_01706 3h2t 3h2t_A 96.0 0.00014 3.8e-09 73.6 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCunit3_12 plu1678 PLT_01705 5a9c 5a9c_A 33.6 17 0.00044 36.7 >5a9c_A Polyhedrin; viral protein, insect virus occlusion BODY, microcrystal; 1.71A {Antheraea mylitta cypovirus 4} 10.1016/j.jsb.2015.08.009
PVCunit3_13 plu1677 PLT_01704 1ocy 1ocy_A 96.8 1.2e-05 3.1e-10 66.1 >1ocy_A Bacteriophage T4 short tail fibre; structural protein, fibrous protein, LIPO-polysaccharide binding, bacteriophage structural protein; HET: CIT; 1.5A {Bacteriophage T4} SCOP: d.231.1.1 10.1016/S0022-2836(03)00755-1
PVCunit3_14 plu1676 PLT_01703 2qcp 2qcp_X 18.9 48.0 0.0012 25.7 >2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X 10.1110/ps.073021307
PVCunit3_15 plu1675 PLT_01702 5e7p 5e7p_A 99.9 8.1e-27 2.1e-31 236.0 >5e7p_A Cell division control protein CDC48; AAA ATPase, M. smegmatic, RECA, hydrolase; HET: ADP PG4 PGE; 2.51A {Mycobacterium smegmatis} 10.1128/JB.00905-15
PVCunit3_16 plu1674 PLT_01701 4faz 4faz_A 33.5 17 0.00044 20.9 >4faz_A 4-oxalocrotonate isomerase protein; alpha/beta fold, tautomerase; 1.57A {Methylibium petroleiphilum} 10.1016/j.abb.2013.06.016
PVCunit3_17 plu1673 PLT_01700 1vwx 1vwx_f 46.3 7.9 0.00021 26.0 >1vwx_f Ribosomal protein EL33; mammalian, ribosome; 3.40A {Sus scrofa} PDB: 1vwz_f 1vx1_f 1vx4_f 3j3b_f 4cxd_f 4upx_f 4uq1_f 4w20_f 4w22_f 4w25_f 4w27_f Key error. ID likely deprecated.
PVCunit3_18 plu1672 PLT_01699 1wyp 1wyp_A 23.3 34 0.00088 25.8 >1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} No DOI found.
PVCunit3_19 plu1671 PLT_01698 2a7o 2a7o_A 21.3 39 0.001 26.3 >2a7o_A Huntingtin interacting protein B; SRI domain, SRI, HSRI, SET2, HSET2, phosphoctd associating protein, SET2 RPB1-interacting domain, PCID, PCAP; NMR {Homo sapiens} 10.1073/pnas.0506350102
PVCunit4_1 plu1667 PLT_01696 3eaa 3eaa_A 74.4 1.0 2.7e-05 31.1 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVCunit4_2 plu1666 PLT_01695 3j9q 3j9q_A 100.0 1.4e-33 3.8e-38 238.7 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit4_3 plu1665 PLT_01694 3j9q 3j9q_A 100.0 6.2e-35 1.6e-39 255.3 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit4_4 plu1664 PLT_01693 3j9q 3j9q_A 99.9 9.4e-30 2.5e-34 218.9 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit4_5 plu1663 PLT_01692 4tv4 4tv4_A 69.4 1.6 4.3e-05 31.6 >4tv4_A Uncharacterized protein; unknown function, ssgcid, virulence, structural genomics; 2.10A {Burkholderia pseudomallei} No DOI found.
PVCunit4_6 plu1662 PLT_01691 3hk4 3hk4_A 45.6 8.2 0.00021 20.2 >3hk4_A MLR7391 protein; NTF2-like protein, structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, lyase; HET: MSE; 1.96A {Mesorhizobium loti} No DOI found.
PVCunit4_7 plu1661 PLT_01690 5a3a 5a3a_A 47.6 7.3 0.00019 30.9 >5a3a_A SIR2 family protein; transferase, P-ribosyltransferase, metalloprotein, NAD-depen lipoylation, regulatory enzyme, rossmann fold; 1.54A {Streptococcus pyogenes} PDB: 5a3b_A* 5a3c_A* 10.1016/j.molcel.2015.06.013
PVCunit4_8 plu1660 PLT_01689 4uhv 4uhv_A 99.9 1.8e-31 4.7e-36 254.9 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVCunit4_9 plu1659 PLT_01688 2ia7 2ia7_A 99.7 4.8e-22 1.3e-26 135.0 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCunit4_10 plu1658 PLT_01687 2k4r 2k4r_A 30.7 20 0.00053 20.7 >2k4r_A Neurotrypsin; kringle domain, disulfide-rich protein fold, serine endopeptidase, hydrolase, extracellular proteolysis; NMR {Rattus norvegicus} PDB: 2k51_A 10.1021/bi800555z
PVCunit4_11 plu1657 PLT_01686 3h2t 3h2t_A 96.6 2.6e-05 6.8e-10 78.9 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCunit4_12 plu1656 PLT_01685 3p9y 3p9y_A 33.1 17.0 0.00045 36.4 >3p9y_A CG14216, LD40846P; phosphatase, CIS proline, LMW PTP-like fold, RNA polymerase hydrolase; HET: N7P SEP SET IMD PG4; 2.10A {Drosophila melanogaster} PDB: 4imi_B* 4imj_B* 4ygx_B* 3fdf_A 3fmv_A 3omx_A 3omw_A 10.1074/jbc.M110.197129
PVCunit4_13 plu1655 PLT_01684 1ocy 1ocy_A 98.1 3.8e-09 9.9e-14 88.4 >1ocy_A Bacteriophage T4 short tail fibre; structural protein, fibrous protein, LIPO-polysaccharide binding, bacteriophage structural protein; HET: CIT; 1.5A {Bacteriophage T4} SCOP: d.231.1.1 10.1016/S0022-2836(03)00755-1
PVCunit4_14 plu1654 PLT_01683 2kx7 2kx7_A 33.4 17.0 0.00044 31.7 >2kx7_A Sensor-like histidine kinase YOJN; alpha-beta-loop (ABL) domain, phosphotransfer, RCS regulatio two-component system, protein binding; NMR {Escherichia coli} 10.1016/j.str.2011.01.012
PVCunit4_15 plu1653 PLT_01682 5e7p 5e7p_A 99.8 3.5e-25 9e-30 224.4 >5e7p_A Cell division control protein CDC48; AAA ATPase, M. smegmatic, RECA, hydrolase; HET: ADP PG4 PGE; 2.51A {Mycobacterium smegmatis} 10.1128/JB.00905-15
PVCunit4_16 plu1652 PLT_01681 4p7x 4p7x_A 18.4 50.0 0.0013 28.5 >4p7x_A P4H, L-proline CIS-4-hydroxylase; HET: AKG CXS; 1.30A {Rhizobium loti} PDB: 4p7w_A* 10.1021/sb500247a
PVCunit4_17 plu1651 PLT_01680 2yy0 2yy0_A 42.7 9.7 0.00025 26.4 >2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens} No DOI found.
PVCpnf_1 PAU_03353 PAU_03392 5IV5 5IV5_F 99.4 1.6e-16 2.8e-21 108.8 >5IV5_FI Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCpnf_2 PAU_03352 PAU_03391 3J9Q 3J9Q_C 100.0 3.5e-34 6e-39 243.2 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCpnf_3 PAU_03351 PAU_03390 3J9Q 3J9Q_C 99.9 8.8e-32 1.5e-36 234.4 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCpnf_4 PAU_03350 PAU_03389 3J9Q 3J9Q_Q 99.9 9.1e-28 1.6e-32 207.6 >3J9Q_Q sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCpnf_5 PAU_03349 PAU_03388 5IV5 5IV5_I 99.0 2.3e-13 4e-18 93.6 >5IV5_IA Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCpnf_6 PAU_03348 PAU_03387 3SLS 3SLS_B 75.1 1.5 2.5e-05 26.7 >3SLS_B Dual specificity mitogen-activated protein kinase; Serine-threonine kinase, Signalling, TRANSFERASE-TRANSFERASE INHIBITOR; HET: 77D, ANP; 2.3A {Homo sapiens}
PVCpnf_7 PAU_03347 PAU_03386 3KXY 3KXY_Y 43.4 14.0 0.00024 28.1 >3KXY_Y Exoenzyme S synthesis protein C; type-three secretion system, TTSS, T3SS; 2.804A {Pseudomonas aeruginosa}
PVCpnf_8 PAU_03346 PAU_03385 2P5Z 2P5Z_X 99.9 3.3e-28 5.7e-33 219.2 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVCpnf_9 PAU_03345 PAU_03384 2IA7 2IA7_A 99.5 3.5e-18 6e-23 113.3 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVCpnf_10 PAU_03344 PAU_03383 1WEY 1WEY_A 71.0 2.2 3.7e-05 26.9 >1WEY_A calcipressin 1; structural genomics, RRM domain, calcipressin; NMR {Mus musculus} SCOP: d.58.7.1
PVCpnf_11 PAU_03343 PAU_03382 5IV5 5IV5_E 96.4 7.5e-05 1.3e-09 79.3 >5IV5_EA Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCpnf_12 PAU_03342 PAU_03381 5CER 5CER_E 30.8 30 0.00052 35.6 >5CER_E Bd0816 (E.C.3.4.16.4), Bd3460; transpeptidase and ankyrin repeat, immune; 2.48A {Bdellovibrio bacteriovorus HD100}
PVCpnf_13 PAU_03341 PAU_03380 2XGF 2XGF_B 91.6 0.048 8.3e-07 50.0 >2XGF_B LONG TAIL FIBER PROTEIN P37; VIRAL PROTEIN, FIBER PROTEIN; 2.2A {ENTEROBACTERIA PHAGE T4}
PVCpnf_14 PAU_03340 PAU_03379 3C9P 3C9P_A 28.5 35.0 0.00061 31.5 >3C9P_A Uncharacterized protein SP1917; Streptococcus pneumoniae, SP_1917, Structural Genomics; 1.96A {Streptococcus pneumoniae}
PVCpnf_15 PAU_03339 PAU_03378 5E7P 5E7P_A 99.7 6e-22 1e-26 196.1 >5E7P_A Cell division control protein Cdc48; AAA ATPase, M. Smegmatic, RecA; HET: PGE, GOL, ADP, PG4; 2.507A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
PVCpnf_16 PAU_03338 PAU_03377 3UV1 3UV1_A 22.7 53 0.00092 25.1 >3UV1_A Der f 7 allergen; Super-roll, ALLERGEN; HET: MSE; 2.0A {Dermatophagoides farinae}
PVCpnf_17 PAU_03337 PAU_03376 2COL 2COL_A 96.8 1.5e-05 2.6e-10 74.8 >2COL_A Bifunctional hemolysin-adenylate cyclase (E.C.4.6.1.1); LYASE, Calcium binding, LYASE-METAL BINDING; 2.2A {Bordetella pertussis}
PVCpnf_18 PAU_03336 PAU_03375 4TNO 4TNO_A 69.5 2.5 4.2e-05 24.4 >4TNO_A HYPOTHETICAL PROTEIN PF1117; SULFUR SAD, hydrolase; 2.14A {Pyrococcus furiosus}
PVCpnf_19 PAU_03334 PAU_03374 3L3U 3L3U_B 70.4 2.3 3.9e-05 22.6 >3L3U_B POL polyprotein; DNA INTEGRATION, AIDS, INTEGRASE, ENDONUCLEASE; HET: SO4; 1.4A {Human immunodeficiency virus 1}
PVCpnf_20 PAU_03333 PAU_03373 3FXQ 3FXQ_A 99.7 5.6e-21 9.7e-26 122.1 >3FXQ_A LysR type regulator of tsaMBCD; LysR-type, transcriptional regulator, LTTR, TsaR; 1.85A {Comamonas testosteroni}
PVCpnf_21 PAU_03332 PAU_03372 1HQ0 1HQ0_A 100.0 2.4e-54 4.1e-59 390.4 >1HQ0_A CYTOTOXIC NECROTIZING FACTOR 1; BETA SANDWICH, RHO DEAMIDASE, RHO; HET: PO4; 1.83A {Escherichia coli} SCOP: d.194.1.1
PVCpnf_22 PAU_03331 PAU_03371 1JEO 1JEO_A 57.2 6.1 0.0001 23.6 >1JEO_A HYPOTHETICAL PROTEIN MJ1247; RuMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase; HET: CIT; 2.0A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
PVCpnf_23 PAU_03330 PAU_03370 1XJU 1XJU_A 100.0 4.2e-40 7.2e-45 226.9 >1XJU_A Lysozyme (E.C.3.2.1.17); secreted inactive conformation, HYDROLASE; HET: SO4; 1.07A {Enterobacteria phage P1} SCOP: d.2.1.3
PVCpnf_24 PAU_03329 PAU_03369 3VP9 3VP9_B 52.5 8.2 0.00014 29.8 >3VP9_B General transcriptional corepressor TUP1; Four helix bundle, TRANSCRIPTION; HET: DIO; 1.799A {Saccharomyces cerevisiae}
PVCcif_1 PAU_01993 PAU_01961 5IV5 5IV5_B 99.6 7.7e-19 1.3e-23 120.3 >5IV5_BC Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCcif_2 PAU_01994 PAU_01962 3J9Q 3J9Q_Q 99.9 3.1e-31 5.4e-36 225.9 >3J9Q_Q sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCcif_3 PAU_01995 PAU_01963 3J9Q 3J9Q_C 99.9 3.7e-28 6.4e-33 214.6 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCcif_4 PAU_01996 PAU_01964 3J9Q 3J9Q_Q 99.9 9.9e-29 1.7e-33 212.9 >3J9Q_Q sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCcif_5 PAU_01997 PAU_01965 5IV5 5IV5_R 99.0 3.7e-13 6.4e-18 92.6 >5IV5_R Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCcif_6 PAU_01998 PAU_01966 1IV8 1IV8_A 42.6 15 0.00026 29.0 >1IV8_A MALTOOLIGOSYL TREHALOSE SYNTHASE(E.C.5.4.99.15); TREHALOSE SYNTHASE, BETA ALPHA BARREL; 1.9A {Sulfolobus acidocaldarius} SCOP: b.71.1.1, c.1.8.1
PVCcif_7 PAU_01999 PAU_01967 5A3A 5A3A_A 62.8 4.1 7.1e-05 33.0 >5A3A_A SIR2 FAMILY PROTEIN (E.C.2.4.2.30); TRANSFERASE, P-RIBOSYLTRANSFERASE, METALLOPROTEIN, NAD-DEPENDENT, LIPOYLATION; HET: EDO, GLY; 1.54A {STREPTOCOCCUS PYOGENES}
PVCcif_8 PAU_02000 PAU_01968 2P5Z 2P5Z_X 99.9 3.4e-29 5.9e-34 225.3 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVCcif_9 PAU_02001 PAU_01969 2IA7 2IA7_A 99.6 5.9e-20 1e-24 122.6 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVCcif_10 PAU_02002 PAU_01970 1JW9 1JW9_B 40.6 17 0.00029 24.8 >1JW9_B MOLYBDOPTERIN BIOSYNTHESIS MOEB PROTEIN, MOLYBDOPTERIN; MoeB: modified Rossmann fold ; HET: SO4; 1.7A {Escherichia coli} SCOP: c.111.1.1
PVCcif_11 PAU_02003 PAU_01971 3H2T 3H2T_A 96.3 0.00011 1.9e-09 74.9 >3H2T_A Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVCcif_12 PAU_02004 PAU_01972 4ORL 4ORL_A 57.3 6.0 0.0001 36.3 >4ORL_A Uncharacterized protein; PF16022 family, DUF4783, Structural Genomics; 1.4A {Bacteroides ovatus}
PVCcif_13 PAU_02005 PAU_01973 2FKK 2FKK_A 97.0 5.1e-06 8.7e-11 69.7 >2FKK_A Baseplate structural protein Gp10; Bacteriophage T4 Baseplate ; HET: EDO; 1.2A {Enterobacteria phage T4}
PVCcif_14 PAU_02006 PAU_01974 3KDE 3KDE_C 17.7 80.0 0.0014 23.2 >3KDE_C PROTEIN/DNA Complex; THAP domain, DNA-binding domain, zinc-finger; 1.74A {Drosophila melanogaster}
PVCcif_15 PAU_02007 PAU_01975 5E7P 5E7P_A 99.7 3.2e-22 5.6e-27 197.7 >5E7P_A Cell division control protein Cdc48; AAA ATPase, M. Smegmatic, RecA; HET: PGE, GOL, ADP, PG4; 2.507A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
PVCcif_16 PAU_02008 PAU_01976 4V9F 4V9F_6 51.5 8.7 0.00015 27.2 >4V9F_6 PROTEIN/RNA Complex; 50S ribosomal subunit, ribonucleoprotein, ribosomal; HET: OMG, UR3, CL, OMU, PSU, ACY, MG, NA, 1MA; 2.404A {Haloarcula marismortui}
PVCcif_17 PAU_02009 PAU_01977 4FBJ 4FBJ_A 100.0 2e-98 3e-103 664.7 >4FBJ_A Hypothetical protein, NEDD8; Effector-Host target complex, Glutamine deamidase; 1.6A {Photorhabdus luminescens subsp. laumondii}
PVCcif_18 PAU_02010 PAU_01978 1IRG 1IRG_A 35.8 22 0.00038 28.6 >1IRG_A INTERFERON REGULATORY FACTOR-2; TRANSCRIPTION REGULATION, WINGED HELIX-TURN-HELIX; NMR {Mus musculus} SCOP: a.4.5.23
PVCcif_19 PAU_02011 PAU_01979 4JXJ 4JXJ_A 43.6 14 0.00024 30.9 >4JXJ_A Ribosomal RNA small subunit methyltransferase; Structural Genomics, NIAID, National Institute; HET: IOD; 2.0A {Rickettsia bellii}
PVCcif_20 PAU_02012 PAU_01980 3IKM 3IKM_A 30.2 32 0.00054 33.8 >3IKM_A DNA polymerase subunit gamma-1 (E.C.2.7.7.7); Human mitochondrial DNA polymerase, Disease; 3.24A {Homo sapiens}
PVClumt_0 PAU_02249 PAU_02208 6EKT 6EKT_A 99.7 6.3e-21 1.1e-25 179.4 >6EKT_A p-47 protein; lipid binding, LIPID BINDING PROTEIN; 1.75A {Clostridium botulinum (strain Kyoto / Type A2)}
PVClumt_1 PAU_02247 PAU_02206 5W5F 5W5F_J 99.4 6.3e-17 1.1e-21 110.9 >5W5F_J Tail tube protein gp19; T4 tail tube, dose limit;{Enterobacteria phage T4 sensu lato}
PVClumt_2 PAU_02246 PAU_02205 3J9Q 3J9Q_Q 99.9 5.3e-29 9.1e-34 218.0 >3J9Q_Q sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVClumt_4 PAU_02245 PAU_02204 3J9Q 3J9Q_Q 99.8 9.1e-26 1.6e-30 194.0 >3J9Q_Q sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVClumt_5 PAU_02244 PAU_02203 5IV5 5IV5_R 99.1 1e-13 1.8e-18 95.7 >5IV5_R Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVClumt_6 PAU_02243 PAU_02202 1USD 1USD_A 70.0 2.4 4.1e-05 24.3 >1USD_A VASODILATOR-STIMULATED PHOSPHOPROTEIN; SIGNALING PROTEIN, PHOSPHORYLATION, ACTIN-BINDING, KINASE; 1.7A {HOMO SAPIENS} SCOP: h.1.29.1
PVClumt_7 PAU_02242 PAU_02201 3D1B 3D1B_A 28.0 37.0 0.00063 28.4 >3D1B_A RNA-induced transcriptional silencing complex protein; all alpha motif, RITS complex; 1.7A {Schizosaccharomyces pombe}
PVClumt_8 PAU_02241 PAU_02200 2P5Z 2P5Z_X 99.8 1.6e-23 2.8e-28 188.1 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVClumt_9 PAU_02240 PAU_02199 2IA7 2IA7_A 99.5 6.9e-18 1.2e-22 112.8 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVClumt_10 afp10 PAU_02198 4JIW 4JIW_P 68.9 2.6 4.5e-05 26.9 >4JIW_P Tail-associated lysozyme (E.C.3.2.1.17), Putative uncharacterized; PAAR-repeat motif, membrane piercing, type; 3.402A {Enterobacteria phage T4}
PVClumt_11 afp11 PAU_02197 3H2T 3H2T_A 95.8 0.00041 7.1e-09 68.0 >3H2T_A Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVClumt_12 PAU_02237 PAU_02196 6BCA 6BCA_A 31.8 29 0.00049 30.2 >6BCA_A Transforming protein RhoA, A-kinase anchor; Rho GTPase Guanine Nucleotide Exchange; HET: GSP; 1.995A {Homo sapiens}
PVClumt_13 PAU_02236 PAU_02195 1V1H 1V1H_E 96.0 0.00028 4.9e-09 53.9 >1V1H_E FIBRITIN, FIBER PROTEIN; ADENOVIRUS, CHIMERA, FIBER PROTEIN; 1.9A {HUMAN ADENOVIRUS TYPE 2, BACTERIOPHAGE T4} SCOP: h.1.17.1, b.83.1.1
PVClumt_97 PAU_02235 PAU_02194 6EKT 6EKT_A 99.2 3.2e-15 5.5e-20 147.3 >6EKT_A p-47 protein; lipid binding, LIPID BINDING PROTEIN; 1.75A {Clostridium botulinum (strain Kyoto / Type A2)}
PVClumt_98 PAU_02234 PAU_02193 4AK2 4AK2_A 68.5 2.7 4.6e-05 39.1 >4AK2_A BT_4661; HEPARIN-BINDING PROTEIN, HEPARAN SULPHATE; HET: SGN, IDS; 1.35A {BACTEROIDES THETAIOTAOMICRON}
PVClumt_99 PAU_02233 PAU_02192 4PAC 4PAC_A 17.2 84.0 0.0014 26.6 >4PAC_A histidine phosphotransfer protein 2 from; cytokinin signaling, helical fold, signaling; HET: MES; 2.53A {Arabidopsis thaliana}
PVClumt_15 PAU_02232 PAU_02191 5E7P 5E7P_A 99.7 1.1e-21 1.9e-26 194.4 >5E7P_A Cell division control protein Cdc48; AAA ATPase, M. Smegmatic, RecA; HET: PGE, GOL, ADP, PG4; 2.507A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
PVClumt_16 PAU_02231 PAU_02190 1PDO 1PDO_A 57.1 6.1 0.0001 30.2 >1PDO_A MANNOSE PERMEASE; PHOSPHOENOLPYRUVATE DEPENDENT PHOSPHOTRANSFERASE SYSTEM, PHOSPHOTRANSFERASE; 1.7A {Escherichia coli} SCOP: c.54.1.1
PVClumt_17 PAU_02230 PAU_02189 4MIX 4MIX_B 100.0 3.7e-50 6.3e-55 429.5 >4MIX_B Putative insecticidal toxin (E.C.2.4.1.-); tyrosine glycosylation, UDP-GlcNAc, nucleotide-binding domain; HET: UD1; 1.8A {Photorhabdus asymbiotica subsp. asymbiotica}
PVClopT_1 PAU_02112 PAU_02074 5IV5 5IV5_D 99.4 5.3e-17 9.1e-22 110.8 >5IV5_DE Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVClopT_2 PAU_02111 PAU_02073 3J9Q 3J9Q_C 100.0 7.8e-34 1.3e-38 240.5 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVClopT_4 PAU_02110 PAU_02072 3J9Q 3J9Q_Q 99.9 1.2e-30 2.1e-35 224.2 >3J9Q_Q sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVClopT_5 PAU_02109 PAU_02071 5W5F 5W5F_J 99.0 4.8e-13 8.2e-18 92.0 >5W5F_J Tail tube protein gp19; T4 tail tube, dose limit;{Enterobacteria phage T4 sensu lato}
PVClopT_6 PAU_02108 PAU_02070 5EUL 5EUL_E 64.4 3.7 6.3e-05 24.0 >5EUL_E SecA, SecY, SecE, AYC08; SecY, SecA, ATPase, channel, PROTEIN; HET: ADP, TBR; 3.7A {Bacillus subtilis (strain 168)}
PVClopT_7 PAU_02107 PAU_02069 1FLT 1FLT_Y 29.9 32 0.00056 23.2 >1FLT_Y VASCULAR ENDOTHELIAL GROWTH FACTOR, FMS-LIKE; COMPLEX (GROWTH FACTOR-TRANSFERASE), FLT-1 RECEPTOR; 1.7A {Homo sapiens} SCOP: b.1.1.4
PVClopT_8 PAU_02106 PAU_02068 2P5Z 2P5Z_X 99.9 7.8e-31 1.3e-35 235.8 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVClopT_9 PAU_02105 PAU_02067 2IA7 2IA7_A 99.6 5.5e-20 9.5e-25 121.9 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVClopT_10 PAU_02104 PAU_02066 5FMJ 5FMJ_B 50.9 9 0.00016 23.4 >5FMJ_B BCL-2-LIKE PROTEIN 1, BAK1 PROTEIN; BCL-XL, BAK, BH3 DOMAIN, APOPTOSIS; HET: EDO; 2.43A {HOMO SAPIENS}
PVClopT_11 PAU_02103 PAU_02065 3H2T 3H2T_A 96.4 8.2e-05 1.4e-09 78.8 >3H2T_A Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVClopT_12 PAU_02102 PAU_02064 2FFM 2FFM_A 38.8 19 0.00032 31.7 >2FFM_A SAV1430; alpha-beta protein., Structural Genomics, PSI; 2.51A {Staphylococcus aureus subsp. aureus Mu50} SCOP: d.267.1.1
PVClopT_14 PAU_02101 PAU_02063 2GOM 2GOM_B 21.2 60.0 0.001 26.8 >2GOM_B Fibrinogen-binding protein; three-helix closed bundle with left-hand; 1.25A {Staphylococcus aureus} SCOP: a.7.17.1
PVClopT_15 PAU_02100 PAU_02062 5E7P 5E7P_B 99.7 7e-22 1.2e-26 195.4 >5E7P_B Cell division control protein Cdc48; AAA ATPase, M. Smegmatic, RecA; HET: PGE, GOL, ADP, PG4; 2.507A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
PVClopT_16 PAU_02099 PAU_02061 3OIZ 3OIZ_A 23.6 50.0 0.00086 21.8 >3OIZ_A Antisigma-factor antagonist, STAS; PSI-2, Midwest Center for Structural; 1.65A {Rhodobacter sphaeroides}
PVClopT_17 PAU_02098 PAU_02060 2EBH 2EBH_X 100.0 7e-85 1.2e-89 671.1 >2EBH_X Dermonecrotic toxin; Pasteurella multocida toxin, Cys1165Ser mutant; HET: TRE; 2.4A {Pasteurella multocida} SCOP: d.3.1.17, c.150.1.2, a.296.1.1
PVClopT_18 PAU_02097 PAU_02059 5O9Z 5O9Z_Q 64.0 3.8 6.6e-05 37.9 >5O9Z_Q Pre-mRNA-processing-splicing factor 8, 116 kDa; Spliceosome, pre-mRNA splicing, macromolecular complex; 4.5A {Homo sapiens}
PVClopT_19 PAU_02096 PAU_02058 1UKF 1UKF_A 99.8 9.6e-25 1.6e-29 182.9 >1UKF_A Avirulence protein AVRPPH3; AvrPphB, AvrPph3, Avirulence, Hypersensitive Response; 1.35A {Pseudomonas syringae pv. phaseolicola} SCOP: d.3.1.10
PVClopT_20 PAU_02095 PAU_02057 4IGL 4IGL_D 100.0 1.9e-55 3.3e-60 420.2 >4IGL_D YenB, YenC2; Beta-Propeller, RHS, toxin complex, Toxin; HET: GOL; 2.49A {Yersinia}
PVCunit1_1 afp1 PAU_02775 5IV5 5IV5_I 99.5 1.9e-17 3.2e-22 113.5 >5IV5_IB Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCunit1_2 afp2 PAU_02776 3J9Q 3J9Q_Q 100.0 1.1e-35 1.9e-40 252.7 >3J9Q_Q sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit1_3 afp3 PAU_02777 3J9Q 3J9Q_C 100.0 9.9e-35 1.7e-39 254.8 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit1_4 afp4 PAU_02778 3J9Q 3J9Q_Q 99.9 3.9e-29 6.7e-34 215.6 >3J9Q_Q sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit1_5 afp5 PAU_02779 5IV5 5IV5_R 99.1 1.1e-13 1.9e-18 95.1 >5IV5_R Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCunit1_6 afp7 PAU_02780 4E71 4E71_A 47.5 11 0.00019 23.5 >4E71_A Plexin-B2; plexin, transmembrane, signaling, rbd, Structural; 2.26A {Homo sapiens}
PVCunit1_7 afp7 PAU_02781 5A3A 5A3A_A 59.7 5.1 8.8e-05 32.5 >5A3A_A SIR2 FAMILY PROTEIN (E.C.2.4.2.30); TRANSFERASE, P-RIBOSYLTRANSFERASE, METALLOPROTEIN, NAD-DEPENDENT, LIPOYLATION; HET: EDO, GLY; 1.54A {STREPTOCOCCUS PYOGENES}
PVCunit1_8 PAU_02796 PAU_02782 2P5Z 2P5Z_X 99.9 2.7e-32 4.7e-37 245.2 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVCunit1_9 afp9 PAU_02783 2IA7 2IA7_A 99.6 4.6e-19 7.8e-24 118.4 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVCunit1_10 afp10 PAU_02784 1YOV 1YOV_A 43.2 14 0.00025 30.9 >1YOV_A Amyloid protein-binding protein 1, Ubiquitin-activating; ubiquitin, NEDD8, E1, APPBP1, UBA3; 2.6A {Homo sapiens} SCOP: c.111.1.2
PVCunit1_11 afp11 PAU_02785 3H2T 3H2T_A 96.4 7e-05 1.2e-09 76.4 >3H2T_A Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVCunit1_12 afp12 PAU_02786 2K0B 2K0B_X 22.9 53.0 0.00091 28.5 >2K0B_X Sequestosome-1; ubiquitin binding, helical bundle, three; NMR {Homo sapiens} SCOP: a.5.2.1
PVCunit1_13 PAU_02801 PAU_02787 2FKK 2FKK_A 97.8 5.1e-08 8.7e-13 85.0 >2FKK_A Baseplate structural protein Gp10; Bacteriophage T4 Baseplate ; HET: EDO; 1.2A {Enterobacteria phage T4}
PVCunit1_14 orf25 PAU_02788 4I7W 4I7W_B 24.8 46.0 0.00079 30.2 >4I7W_B Dihydrodipicolinate synthase (E.C.4.2.1.52); TIM BARREL, lysine biosynthesis, pyruvate; HET: LYS; 1.3A {Agrobacterium sp.}
PVCunit1_15 PAU_02803 PAU_02789 5E7P 5E7P_A 99.8 6.2e-24 1.1e-28 210.1 >5E7P_A Cell division control protein Cdc48; AAA ATPase, M. Smegmatic, RecA; HET: PGE, GOL, ADP, PG4; 2.507A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
PVCunit1_16 PAU_02804 PAU_02790 3FM2 3FM2_A 24.5 47.0 0.0008 25.5 >3FM2_A Uncharacterized protein, distantly related to; STRUCTURAL GENOMICS, JOINT CENTER FOR; HET: ACT; 1.8A {Anabaena variabilis ATCC 29413}
PVCunit1_17 hrpN PAU_02791 2I88 2I88_A 79.9 0.83 1.4e-05 40.9 >2I88_A Colicin-E1; protein-membrane interactions, toxin-membrane interactions, toxin; 2.5A {Escherichia coli}
PVCunit1_18 PAU_02806 PAU_02792 5SVA 5SVA_V 36.3 22 0.00037 31.7 >5SVA_V DNA-directed RNA polymerase II subunit; Transcriptional Initiation, Mediator, Pre-Initiation Complex; 15.3A {Saccharomyces cerevisiae}
PVCunit1_19 PAU_02807 PAU_02793 5E24 5E24_D 26.0 42 0.00072 24.2 >5E24_D Maltose-binding periplasmic protein, Protein hairless; Notch Signaling, Suppressor of Hairless; HET: EDO, MTT; 2.14A {Escherichia coli O157:H7}
PVCunit1_20 PAU_02808 PAU_02794 2XR4 2XR4_B 100.0 2.2e-34 3.8e-39 230.8 >2XR4_B LECTIN; SUGAR BINDING PROTEIN, LUNG, PATHOGEN; HET: SO4; 1.9A {BURKHOLDERIA CENOCEPACIA}
PVCpnf_1 PAK_3544 PAK_03203 5IV5 5IV5_R 99.4 4.6e-17 8e-22 111.5 >5IV5_R Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCpnf_2 PAK_3543 PAK_03202 3J9Q 3J9Q_Q 100.0 5.6e-34 9.6e-39 241.9 >3J9Q_Q sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCpnf_3 PAK_3542 PAK_03201 3J9Q 3J9Q_Q 99.9 4.5e-31 7.7e-36 230.3 >3J9Q_Q sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCpnf_4 PAK_3541 PAK_03200 3J9Q 3J9Q_Q 99.9 2.3e-28 3.9e-33 210.9 >3J9Q_Q sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCpnf_5 PAK_3540 PAK_03199 5IV5 5IV5_F 99.0 2.1e-13 3.6e-18 93.8 >5IV5_FI Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCpnf_6 PAK_3539 PAK_03198 3SLS 3SLS_B 75.1 1.5 2.5e-05 26.7 >3SLS_B Dual specificity mitogen-activated protein kinase; Serine-threonine kinase, Signalling, TRANSFERASE-TRANSFERASE INHIBITOR; HET: 77D, ANP; 2.3A {Homo sapiens}
PVCpnf_7 PAK_3538 PAK_03197 4LID 4LID_A 25.8 43.0 0.00073 27.5 >4LID_A A-100; VIRAL PROTEIN, Hyperthermophilic viral protein; 3.0A {Sulfolobus spindle-shaped virus 1}
PVCpnf_8 PAK_3537 PAK_03196 2P5Z 2P5Z_X 99.9 2.1e-28 3.7e-33 220.4 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVCpnf_9 PAK_3536 PAK_03195 2IA7 2IA7_A 99.5 8.2e-18 1.4e-22 111.5 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVCpnf_10 PAK_3535 PAK_03194 1UKF 1UKF_A 56.9 6.2 0.00011 30.5 >1UKF_A Avirulence protein AVRPPH3; AvrPphB, AvrPph3, Avirulence, Hypersensitive Response; 1.35A {Pseudomonas syringae pv. phaseolicola} SCOP: d.3.1.10
PVCpnf_11 PAK_3534 PAK_03193 3H2T 3H2T_A 96.2 0.00013 2.3e-09 72.7 >3H2T_A Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVCpnf_12 PAK_3533 PAK_03192 1IBT 1IBT_E 28.4 36.0 0.00061 31.3 >1IBT_E HISTIDINE DECARBOXYLASE BETA CHAIN/HISTIDINE DECARBOXYLASE; HELIX DISORDER, LESS ACTIVE FORM; 2.6A {Lactobacillus sp.} SCOP: d.155.1.1
PVCpnf_13 PAK_3532 PAK_03191 2FKK 2FKK_A 96.9 8.4e-06 1.4e-10 71.8 >2FKK_A Baseplate structural protein Gp10; Bacteriophage T4 Baseplate ; HET: EDO; 1.2A {Enterobacteria phage T4}
PVCpnf_14 PAK_3531 PAK_03190 5JY5 5JY5_B 26.3 41.0 0.00071 23.5 >5JY5_B Thioredoxin; Thioredoxin 1 Cryptococcus neoformans X-ray; HET: SO4, GOL; 1.8A {Cryptococcus neoformans var. grubii serotype A}
PVCpnf_15 PAK_3530 PAK_03189 5E7P 5E7P_A 99.7 2.6e-22 4.5e-27 198.6 >5E7P_A Cell division control protein Cdc48; AAA ATPase, M. Smegmatic, RecA; HET: PGE, GOL, ADP, PG4; 2.507A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
PVCpnf_16 PAK_3529 PAK_03188 3T5S 3T5S_A 34.5 24 0.00041 26.1 >3T5S_A Macrophage migration inhibitory factor; SSGCID, Structural Genomics, Seattle Structural; 2.3A {Giardia lamblia}
PVCpnf_17 PAK_3527 PAK_03187 4WYQ 4WYQ_E 44.5 13 0.00023 18.2 >4WYQ_E Dicer (E.C.3.1.26.3), Trans-activation-responsive RNA-binding protein; RNA interference, microRNA, dsRBP, dsRBD; 3.2A {Homo sapiens}
PVCpnf_18 PAK_3526 PAK_03186 3SZP 3SZP_B 99.7 3.4e-21 5.9e-26 120.2 >3SZP_B Transcriptional regulator, LysR family; winged helix-turn helix, DNA-binding, transcription; 2.202A {Vibrio cholerae}
PVCpnf_19 PAK_3525 PAK_03185 4MIX 4MIX_B 99.9 9e-32 1.6e-36 228.1 >4MIX_B Putative insecticidal toxin (E.C.2.4.1.-); tyrosine glycosylation, UDP-GlcNAc, nucleotide-binding domain; HET: UD1; 1.8A {Photorhabdus asymbiotica subsp. asymbiotica}
PVCpnf_20 PAK_3524 PAK_03184 4LDL 4LDL_A 99.4 2e-16 3.5e-21 97.6 >4LDL_A Lysozyme, Beta-2 adrenergic receptor (E.C.3.2.1.17); G protein coupled receptor, MEMBRANE; HET: XQC, 1WV; 3.1A {Enterobacteria phage T4, Homo sapiens}
PVCpnf_21 PAK_3523 PAK_03183 3HDF 3HDF_A 99.7 1.5e-21 2.7e-26 119.9 >3HDF_A Lysozyme (E.C.3.2.1.17); lysozyme-like, Antimicrobial, Bacteriolytic enzyme, Glycosidase; HET: GOL, NO3; 1.7A {Enterobacteria phage P21}
PVCpnf_22 PAK_3522 PAK_03182 5KKV 5KKV_A 62.7 4.2 7.2e-05 26.0 >5KKV_A GCN4-p2L; GCN4 coiled-coil, PROTEIN FIBRIL; 1.9A {N/A}
PVCpnf_23 PAK_3521 PAK_03181 1XJU 1XJU_A 100.0 2e-40 3.4e-45 228.5 >1XJU_A Lysozyme (E.C.3.2.1.17); secreted inactive conformation, HYDROLASE; HET: SO4; 1.07A {Enterobacteria phage P1} SCOP: d.2.1.3
PVCcif_1 PAK_1969 PAK_01787 5IV5 5IV5_I 99.6 1.1e-18 1.8e-23 119.6 >5IV5_IB Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCcif_2 PAK_1970 PAK_01788 3J9Q 3J9Q_C 99.9 4.8e-32 8.3e-37 231.0 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCcif_3 PAK_1971 PAK_01789 3J9Q 3J9Q_C 99.9 1e-29 1.7e-34 224.5 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCcif_4 PAK_1972 PAK_01790 3J9Q 3J9Q_Q 99.9 7.9e-29 1.4e-33 213.5 >3J9Q_Q sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCcif_5 PAK_1973 PAK_01791 5IV5 5IV5_D 98.9 6.3e-13 1.1e-17 91.4 >5IV5_DE Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCcif_6 PAK_1974 PAK_01792 5VQF 5VQF_B 45.6 12 0.00021 24.9 >5VQF_B Transforming growth factor beta-1; pro-complex, latency, homodimer, PROTEIN BINDING; HET: NAG, BMA; 2.9A {Sus scrofa}
PVCcif_7 PAK_1975 PAK_01793 5A3A 5A3A_A 66.2 3.2 5.6e-05 33.6 >5A3A_A SIR2 FAMILY PROTEIN (E.C.2.4.2.30); TRANSFERASE, P-RIBOSYLTRANSFERASE, METALLOPROTEIN, NAD-DEPENDENT, LIPOYLATION; HET: EDO, GLY; 1.54A {STREPTOCOCCUS PYOGENES}
PVCcif_8 PAK_1976 PAK_01794 2P5Z 2P5Z_X 99.9 3.5e-30 6.1e-35 231.6 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVCcif_9 PAK_1977 PAK_01795 2IA7 2IA7_A 99.6 1.8e-19 3.1e-24 120.3 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVCcif_10 PAK_1978 PAK_01796 5C2Y 5C2Y_A 35.5 23 0.00039 27.4 >5C2Y_A RNA polymerase II subunit B1; regulator of transcription, zinc finger; HET: SO4; 2.6A {Saccharomyces cerevisiae}
PVCcif_11 PAK_1979 PAK_01797 3H2T 3H2T_A 96.3 9.9e-05 1.7e-09 75.1 >3H2T_A Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVCcif_12 PAK_1980 PAK_01798 6BCA 6BCA_A 63.8 3.9 6.7e-05 35.6 >6BCA_A Transforming protein RhoA, A-kinase anchor; Rho GTPase Guanine Nucleotide Exchange; HET: GSP; 1.995A {Homo sapiens}
PVCcif_13 PAK_1981 PAK_01799 2FKK 2FKK_A 97.3 1.6e-06 2.8e-11 72.6 >2FKK_A Baseplate structural protein Gp10; Bacteriophage T4 Baseplate ; HET: EDO; 1.2A {Enterobacteria phage T4}
PVCcif_14 PAK_1982 PAK_01800 3Q1C 3Q1C_A 19.4 69.0 0.0012 34.2 >3Q1C_A LEE-encoded effector EspG; VirA fold, virulence factor, PAK; 1.596A {Escherichia coli O127:H6}
PVCcif_15 PAK_1983 PAK_01801 5E7P 5E7P_A 99.7 1.4e-20 2.5e-25 186.3 >5E7P_A Cell division control protein Cdc48; AAA ATPase, M. Smegmatic, RecA; HET: PGE, GOL, ADP, PG4; 2.507A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
PVCcif_16 PAK_1984 PAK_01802 3FXD 3FXD_B 34.1 25.0 0.00043 28.1 >3FXD_B Protein IcmQ, Protein IcmR; 4 helix bundle, helix-turn-helix, UNKNOWN; 2.1A {Legionella pneumophila}
PVCcif_17 PAK_1985 PAK_01803 4FBJ 4FBJ_A 100.0 8.6e-93 1.5e-97 629.0 >4FBJ_A Hypothetical protein, NEDD8; Effector-Host target complex, Glutamine deamidase; 1.6A {Photorhabdus luminescens subsp. laumondii}
PVCcif_18 PAK_1986 PAK_01804 2I71 2I71_B 28.5 35 0.00061 31.7 >2I71_B Hypothetical protein; Structural Genomics, APC6294, Conserved hypothetical; 1.7A {Sulfolobus solfataricus} SCOP: e.72.1.1
PVCcif_19 PAK_1987 PAK_01805 5EWY 5EWY_A 97.4 8.3e-07 1.4e-11 73.9 >5EWY_A Putative ADP-Ribosyltransferase Scabin (E.C.2.4.2.31); transferase, inhibitor, TRANSFERASE-TRANSFERASE INHIBITOR complex; HET: 5TQ; 1.4A {Streptomyces scabiei 87.22}
PVCcif_20 PAK_1988 PAK_01806 5NB9 5NB9_A 61.0 4.7 8.1e-05 32.3 >5NB9_A RNA chaperone ProQ; FinO, ProQ, RNA, chaperone; NMR {Escherichia coli O45:K1 (strain S88 / ExPEC)}
PVClumt_0 PAK_2217 PAK_02015 6EKT 6EKT_A 99.6 8.3e-20 1.4e-24 171.8 >6EKT_A p-47 protein; lipid binding, LIPID BINDING PROTEIN; 1.75A {Clostridium botulinum (strain Kyoto / Type A2)}
PVClumt_1 PAK_2216 PAK_02014 5IV5 5IV5_D 99.4 5.8e-17 1e-21 111.1 >5IV5_DE Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVClumt_2 PAK_2215 PAK_02013 3J9Q 3J9Q_Q 99.6 1.1e-18 1.9e-23 149.7 >3J9Q_Q sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVClumt_3 PAK_2214 PAK_02012 3J9Q 3J9Q_Q 97.8 5.4e-08 9.2e-13 68.7 >3J9Q_Q sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVClumt_4 PAK_2213 PAK_02011 3J9Q 3J9Q_C 99.9 2.8e-26 4.7e-31 197.2 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVClumt_5 PAK_2212 PAK_02010 5IV5 5IV5_F 99.2 2.1e-14 3.5e-19 99.1 >5IV5_FI Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVClumt_6 PAK_2211 PAK_02009 1USD 1USD_A 70.9 2.2 3.8e-05 24.5 >1USD_A VASODILATOR-STIMULATED PHOSPHOPROTEIN; SIGNALING PROTEIN, PHOSPHORYLATION, ACTIN-BINDING, KINASE; 1.7A {HOMO SAPIENS} SCOP: h.1.29.1
PVClumt_7 PAK_2210 PAK_02008 3D1B 3D1B_C 28.2 36.0 0.00062 28.4 >3D1B_C RNA-induced transcriptional silencing complex protein; all alpha motif, RITS complex; 1.7A {Schizosaccharomyces pombe}
PVClumt_8 PAK_2209 PAK_02007 2P5Z 2P5Z_X 99.8 2.3e-23 4e-28 187.1 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVClumt_9 PAK_2208 PAK_02006 2IA7 2IA7_A 99.5 9.9e-18 1.7e-22 112.0 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVClumt_10 PAK_2207 PAK_02005 4JIW 4JIW_P 69.9 2.4 4.1e-05 27.1 >4JIW_P Tail-associated lysozyme (E.C.3.2.1.17), Putative uncharacterized; PAAR-repeat motif, membrane piercing, type; 3.402A {Enterobacteria phage T4}
PVClumt_11 PAK_2206 PAK_02004 5CNZ 5CNZ_B 28.7 35 0.0006 20.1 >5CNZ_B MHC class I antigen, Beta-2-microglobulin; Fish MHC class I, Evolution; 1.74A {Ctenopharyngodon idella}
PVClumt_96 PAK_2205 PAK_02003 3H2T 3H2T_A 94.4 0.0049 8.5e-08 52.9 >3H2T_A Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVClumt_12 PAK_2204 PAK_02002 1FHO 1FHO_A 30.0 32 0.00055 27.4 >1FHO_A UNC-89; Pleckstrin Homology domain, electrostatics, muscle; NMR {Caenorhabditis elegans} SCOP: b.55.1.1
PVClumt_13 PAK_2203 PAK_02001 1V1H 1V1H_E 92.6 0.026 4.5e-07 42.9 >1V1H_E FIBRITIN, FIBER PROTEIN; ADENOVIRUS, CHIMERA, FIBER PROTEIN; 1.9A {HUMAN ADENOVIRUS TYPE 2, BACTERIOPHAGE T4} SCOP: h.1.17.1, b.83.1.1
PVClumt_97 PAK_2202 PAK_02000 6EKT 6EKT_A 99.3 5.9e-16 1e-20 152.5 >6EKT_A p-47 protein; lipid binding, LIPID BINDING PROTEIN; 1.75A {Clostridium botulinum (strain Kyoto / Type A2)}
PVClumt_98 PAK_2201 PAK_01999 4AK2 4AK2_A 68.6 2.7 4.6e-05 39.1 >4AK2_A BT_4661; HEPARIN-BINDING PROTEIN, HEPARAN SULPHATE; HET: SGN, IDS; 1.35A {BACTEROIDES THETAIOTAOMICRON}
PVClumt_99 PAK_2200 PAK_01998 3K8P 3K8P_C 33.4 26.0 0.00044 34.3 >3K8P_C Dsl1, Protein transport protein SEC39; Intracellular trafficking, Dsl1 complex, multisubunit; 2.6A {Kluyveromyces lactis}
PVClumt_15 PAK_2199 PAK_01997 5E7P 5E7P_B 99.7 2.6e-22 4.4e-27 198.9 >5E7P_B Cell division control protein Cdc48; AAA ATPase, M. Smegmatic, RecA; HET: PGE, GOL, ADP, PG4; 2.507A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
PVClumt_16 PAK_2198 PAK_01996 1PDO 1PDO_A 56.8 6.2 0.00011 30.1 >1PDO_A MANNOSE PERMEASE; PHOSPHOENOLPYRUVATE DEPENDENT PHOSPHOTRANSFERASE SYSTEM, PHOSPHOTRANSFERASE; 1.7A {Escherichia coli} SCOP: c.54.1.1
PVClumt_17 PAK_2197 PAK_01995 1WRD 1WRD_A 44.0 14.0 0.00023 33.0 >1WRD_A Target of Myb protein 1/Ubiquitin; THREE-HELIX BUNDLE, UBIQUITIN-BINDING PROTEIN, PROTEIN; 1.75A {Bos taurus} SCOP: a.7.8.1
PVClumt_18 PAK_2195 PAK_01994 4MIX 4MIX_B 100.0 1.8e-38 3.1e-43 307.8 >4MIX_B Putative insecticidal toxin (E.C.2.4.1.-); tyrosine glycosylation, UDP-GlcNAc, nucleotide-binding domain; HET: UD1; 1.8A {Photorhabdus asymbiotica subsp. asymbiotica}
PVClopT_1 PAK_2092 PAK_01896 5IV5 5IV5_B 99.4 5.6e-17 9.7e-22 110.7 >5IV5_BC Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVClopT_2 PAK_2091 PAK_01895 3J9Q 3J9Q_C 100.0 5.3e-34 9.1e-39 241.6 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVClopT_4 PAK_2090 PAK_01894 3J9Q 3J9Q_C 99.9 7.1e-29 1.2e-33 213.3 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVClopT_5 PAK_2089 PAK_01893 5IV5 5IV5_R 98.9 8.2e-13 1.4e-17 90.9 >5IV5_R Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVClopT_6 PAK_2088 PAK_01892 4F6T 4F6T_B 49.6 9.7 0.00017 24.6 >4F6T_B Molybdenum storage protein subunit beta; molybdenum storage, ATP hydrolyzation, hexamer; HET: ATP, 6M0, 8M0; 1.6A {Azotobacter vinelandii}
PVClopT_7 PAK_2087 PAK_01891 5A3A 5A3A_A 63.1 4.1 7e-05 33.0 >5A3A_A SIR2 FAMILY PROTEIN (E.C.2.4.2.30); TRANSFERASE, P-RIBOSYLTRANSFERASE, METALLOPROTEIN, NAD-DEPENDENT, LIPOYLATION; HET: EDO, GLY; 1.54A {STREPTOCOCCUS PYOGENES}
PVClopT_8 PAK_2086 PAK_01890 2P5Z 2P5Z_X 99.9 2.1e-29 3.6e-34 226.7 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVClopT_9 PAK_2085 PAK_01889 2IA7 2IA7_A 99.6 3.6e-20 6.1e-25 121.3 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVClopT_10 PAK_2084 PAK_01888 3OJO 3OJO_B 65.0 3.5 6.1e-05 32.9 >3OJO_B Cap5O; Rossmann fold, complex with cofactor; HET: NAD, PDC; 2.5A {Staphylococcus aureus}
PVClopT_11 PAK_2083 PAK_01887 3H2T 3H2T_A 96.0 0.00025 4.3e-09 75.2 >3H2T_A Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVClopT_12 PAK_2082 PAK_01886 2FFM 2FFM_A 35.9 22 0.00038 31.3 >2FFM_A SAV1430; alpha-beta protein., Structural Genomics, PSI; 2.51A {Staphylococcus aureus subsp. aureus Mu50} SCOP: d.267.1.1
PVClopT_14 PAK_2081 PAK_01885 1Z8U 1Z8U_A 28.5 35.0 0.00061 30.2 >1Z8U_A Alpha-hemoglobin stabilizing protein, Hemoglobin alpha; alpha haemoglobin, AHSP, oxidation, interaction; HET: HEM; 2.4A {Homo sapiens} SCOP: a.7.11.1
PVClopT_15 PAK_2080 PAK_01884 5E7P 5E7P_B 99.7 7e-22 1.2e-26 195.4 >5E7P_B Cell division control protein Cdc48; AAA ATPase, M. Smegmatic, RecA; HET: PGE, GOL, ADP, PG4; 2.507A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
PVClopT_16 PAK_2079 PAK_01883 4X8K 4X8K_B 32.3 28.0 0.00048 28.0 >4X8K_B Sigma A Domain 2, RbpA; Transcription activator, Sigma factor; HET: SO4, EDO; 2.202A {Mycobacterium tuberculosis}
PVClopT_17 PAK_2078 PAK_01882 3WYG 3WYG_D 35.4 23 0.00039 23.6 >3WYG_D Gsp1p, Exportin-1, cAMP-dependent protein kinase; HEAT REPEAT, NUCLEAR EXPORT, GTP-BINDING; HET: GTP; 2.15A {Saccharomyces cerevisiae AWRI796}
PVClopT_18 PAK_2077 PAK_01881 1UKF 1UKF_A 99.8 2e-23 3.5e-28 175.0 >1UKF_A Avirulence protein AVRPPH3; AvrPphB, AvrPph3, Avirulence, Hypersensitive Response; 1.35A {Pseudomonas syringae pv. phaseolicola} SCOP: d.3.1.10
PVClopT_19 PAK_2075 PAK_01880 1T3C 1T3C_A 96.2 0.00014 2.4e-09 81.2 >1T3C_A neurotoxin type E (E.C.3.4.24.69); Clostridium botulinum, catalytic domain, E212Q; 1.9A {Clostridium botulinum} SCOP: d.92.1.7
PVCunit1_1 PAK_2876 PAK_02606 5IV5 5IV5_I 99.5 1.5e-17 2.6e-22 113.9 >5IV5_IA Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCunit1_2 PAK_2877 PAK_02607 3J9Q 3J9Q_Q 100.0 1.8e-33 3.1e-38 239.1 >3J9Q_Q sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit1_3 PAK_2878 PAK_02608 3J9Q 3J9Q_Q 100.0 4e-34 6.9e-39 250.4 >3J9Q_Q sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit1_4 PAK_2879 PAK_02609 3J9Q 3J9Q_Q 99.9 3.8e-29 6.5e-34 215.6 >3J9Q_Q sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit1_5 PAK_2880 PAK_02610 5IV5 5IV5_F 99.0 1.8e-13 3.1e-18 94.1 >5IV5_FH Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCunit1_6 PAK_2881 PAK_02611 5T87 5T87_G 77.8 1.1 1.9e-05 28.5 >5T87_G CdiI immunity protein, CdiA toxin; Contact-dependent growth inhibition, toxin, antitoxin; HET: MSE; 2.4A {Cupriavidus taiwanensis (strain DSM 17343 / BCRC 17206 / CIP 107171 / LMG 19424 / R1)}
PVCunit1_7 PAK_2882 PAK_02612 5A3A 5A3A_A 68.3 2.7 4.7e-05 34.0 >5A3A_A SIR2 FAMILY PROTEIN (E.C.2.4.2.30); TRANSFERASE, P-RIBOSYLTRANSFERASE, METALLOPROTEIN, NAD-DEPENDENT, LIPOYLATION; HET: EDO, GLY; 1.54A {STREPTOCOCCUS PYOGENES}
PVCunit1_8 PAK_2883 PAK_02613 2P5Z 2P5Z_X 99.9 1.4e-31 2.5e-36 240.6 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVCunit1_9 PAK_2884 PAK_02614 2IA7 2IA7_A 99.6 5.9e-19 1e-23 117.9 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVCunit1_10 PAK_2885 PAK_02615 1JW9 1JW9_B 52.0 8.4 0.00015 26.2 >1JW9_B MOLYBDOPTERIN BIOSYNTHESIS MOEB PROTEIN, MOLYBDOPTERIN; MoeB: modified Rossmann fold ; HET: SO4; 1.7A {Escherichia coli} SCOP: c.111.1.1
PVCunit1_11 PAK_2886 PAK_02616 3H2T 3H2T_A 96.4 6.6e-05 1.1e-09 76.5 >3H2T_A Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVCunit1_12 PAK_2887 PAK_02617 3N7C 3N7C_B 30.3 31 0.00054 29.9 >3N7C_B Crystal structure of the C-terminal; Nuclear pore complex, NUP2, Ran-binding; 2.26A {Ashbya gossypii}
PVCunit1_13 PAK_2888 PAK_02618 2FKK 2FKK_A 97.6 2.5e-07 4.4e-12 82.7 >2FKK_A Baseplate structural protein Gp10; Bacteriophage T4 Baseplate ; HET: EDO; 1.2A {Enterobacteria phage T4}
PVCunit1_14 PAK_2889 PAK_02619 4E2I 4E2I_1 30.8 30.0 0.00052 25.8 >4E2I_1 Large T antigen, DNA polymerase; replication initiation, Hydrolase-DNA binding complex; HET: ZN; 5.0A {Simian virus 40}
PVCunit1_15 PAK_2890 PAK_02620 5E7P 5E7P_B 99.8 1.1e-22 1.8e-27 201.3 >5E7P_B Cell division control protein Cdc48; AAA ATPase, M. Smegmatic, RecA; HET: PGE, GOL, ADP, PG4; 2.507A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
PVCunit1_16 PAK_2891 PAK_02621 3GGM 3GGM_D 49.2 10.0 0.00017 23.7 >3GGM_D uncharacterized protein BT9727_2919; Bacillus cereus group., Structural Genomics; 2.0A {Bacillus thuringiensis serovar konkukian}
PVCunit1_17 PAK_2892 PAK_02622 2I88 2I88_A 81.6 0.66 1.1e-05 40.9 >2I88_A Colicin-E1; protein-membrane interactions, toxin-membrane interactions, toxin; 2.5A {Escherichia coli}
PVCunit1_18 PAK_2893 PAK_02623 1T2K 1T2K_A 34.8 24 0.00041 28.4 >1T2K_A Interferon regulatory factor 3/Transcription factor; PROTEIN DNA COMPLEX, transcription, Transcription-DNA; 3.0A {Homo sapiens} SCOP: a.4.5.23
PVCunit1_19 PAK_2894 PAK_02624 2OE1 2OE1_A 67.8 2.8 4.9e-05 27.7 >2OE1_A Thioredoxin-3; electron transport, alpha/beta sandwich, reduced; HET: SO4; 2.1A {Saccharomyces cerevisiae}
PVCunit1_20 PAK_2895 PAK_02625 2FKK 2FKK_A 96.3 9.5e-05 1.6e-09 58.2 >2FKK_A Baseplate structural protein Gp10; Bacteriophage T4 Baseplate ; HET: EDO; 1.2A {Enterobacteria phage T4}
PVCunit1_21 PAK_2896 PAK_02626 2XR4 2XR4_B 100.0 2.2e-35 3.7e-40 236.4 >2XR4_B LECTIN; SUGAR BINDING PROTEIN, LUNG, PATHOGEN; HET: SO4; 1.9A {BURKHOLDERIA CENOCEPACIA}
PVCcif_1 plu2531 PLT_02568 5IV5 5IV5_B 99.5 2.8e-18 4.9e-23 117.5 >5IV5_BC Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCcif_2 plu2530 PLT_02567 3J9Q 3J9Q_C 99.9 1.6e-31 2.8e-36 227.6 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCcif_3 plu2529 PLT_02566 3J9Q 3J9Q_Q 100.0 2.9e-35 4.9e-40 258.0 >3J9Q_Q sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCcif_4 plu2528 PLT_02565 3J9Q 3J9Q_Q 99.9 1.6e-28 2.7e-33 211.6 >3J9Q_Q sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCcif_5 plu2527 PLT_02564 5IV5 5IV5_I 99.0 2.1e-13 3.6e-18 93.8 >5IV5_IB Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCcif_6 plu2526 PLT_02563 1USE 1USE_A 70.0 2.4 4.1e-05 24.3 >1USE_A VASODILATOR-STIMULATED PHOSPHOPROTEIN; SIGNALING PROTEIN,, SIGNALING PROTEIN; 1.3A {HOMO SAPIENS} SCOP: h.1.29.1
PVCcif_7 plu2525 PLT_02562 3QDM 3QDM_D 31.1 30 0.00052 22.5 >3QDM_D HLA class I histocompatibility antigen; MART-1 peptide, nonapeptide, MHC class; 2.8A {Homo sapiens}
PVCcif_8 plu2524 PLT_02561 2P5Z 2P5Z_X 99.9 4.4e-29 7.6e-34 224.6 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVCcif_9 plu2523 PLT_02560 2IA7 2IA7_A 99.7 3.4e-21 5.8e-26 127.4 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVCcif_10 plu2522 PLT_02559 4JIW 4JIW_P 63.7 3.9 6.7e-05 26.0 >4JIW_P Tail-associated lysozyme (E.C.3.2.1.17), Putative uncharacterized; PAAR-repeat motif, membrane piercing, type; 3.402A {Enterobacteria phage T4}
PVCcif_11 plu2521 PLT_02558 3H2T 3H2T_A 96.3 9e-05 1.6e-09 75.6 >3H2T_A Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVCcif_12 plu2520 PLT_02557 4D0N 4D0N_B 71.5 2.1 3.6e-05 39.6 >4D0N_B TRANSFORMING PROTEIN RHOA (E.C.3.6.5.2), A-KINASE; CELL CYCLE, AKAP13, LBC, AKAP-LBC; HET: GDP, SO4; 2.1A {HOMO SAPIENS}
PVCcif_13 plu2519 PLT_02556 2FKK 2FKK_A 96.6 3.6e-05 6.2e-10 67.7 >2FKK_A Baseplate structural protein Gp10; Bacteriophage T4 Baseplate ; HET: EDO; 1.2A {Enterobacteria phage T4}
PVCcif_14 plu2518 PLT_02555 5J4U 5J4U_A 47.3 11 0.00019 31.0 >5J4U_A Glutathione transferase family protein; GST, Complex, GSH, TRANSFERASE; HET: GSH; 1.249A {Populus trichocarpa}
PVCcif_15 plu2517 PLT_02554 5E7P 5E7P_A 99.7 2e-22 3.4e-27 199.4 >5E7P_A Cell division control protein Cdc48; AAA ATPase, M. Smegmatic, RecA; HET: PGE, GOL, ADP, PG4; 2.507A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
PVCcif_16 plu2516 PLT_02553 3GGM 3GGM_C 32.5 27 0.00047 22.9 >3GGM_C uncharacterized protein BT9727_2919; Bacillus cereus group., Structural Genomics; 2.0A {Bacillus thuringiensis serovar konkukian}
PVCcif_17 plu2515 PLT_02552 4FBJ 4FBJ_A 100.0 1e-103 2e-108 700.8 >4FBJ_A Hypothetical protein, NEDD8; Effector-Host target complex, Glutamine deamidase; 1.6A {Photorhabdus luminescens subsp. laumondii}
PVCcif_18 plu2514 PLT_02551 1LBU 1LBU_A 36.7 21.0 0.00036 28.1 >1LBU_A MURAMOYL-PENTAPEPTIDE CARBOXYPEPTIDASE; HYDROLASE, NUCLEAR RECEPTOR, CARBOXYPEPTIDASE; 1.8A {Streptomyces albus} SCOP: d.65.1.1, a.20.1.1
PVClopT_1 plu2385 PLT_02424 5IV5 5IV5_B 99.4 3.7e-17 6.3e-22 112.0 >5IV5_BC Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVClopT_2 plu2386 PLT_02425 3J9Q 3J9Q_Q 99.9 9.5e-32 1.6e-36 228.6 >3J9Q_Q sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVClopT_3 plu2387 PLT_02426 3J9Q 3J9Q_Q 99.9 1.5e-32 2.5e-37 238.6 >3J9Q_Q sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVClopT_4 plu2388 PLT_02427 3J9Q 3J9Q_Q 99.9 8.4e-32 1.4e-36 231.1 >3J9Q_Q sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVClopT_5 plu2389 PLT_02428 5IV5 5IV5_B 98.8 3.8e-12 6.5e-17 87.6 >5IV5_BB Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVClopT_6 plu2390 PLT_02429 1RH4 1RH4_A 49.4 9.9 0.00017 21.7 >1RH4_A RIGHT-HANDED COILED COIL TETRAMER; DE NOVO DESIGN; HET: IPA; 1.9A {synthetic construct} SCOP: k.17.1.1
PVClopT_7 plu2391 PLT_02430 5A3A 5A3A_A 64.3 3.7 6.4e-05 33.2 >5A3A_A SIR2 FAMILY PROTEIN (E.C.2.4.2.30); TRANSFERASE, P-RIBOSYLTRANSFERASE, METALLOPROTEIN, NAD-DEPENDENT, LIPOYLATION; HET: EDO, GLY; 1.54A {STREPTOCOCCUS PYOGENES}
PVClopT_8 plu2392 PLT_02431 2P5Z 2P5Z_X 99.9 3.5e-32 6e-37 244.6 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVClopT_9 plu2393 PLT_02432 2IA7 2IA7_A 99.7 1.3e-20 2.2e-25 124.9 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVClopT_10 plu2394 PLT_02433 4JIV 4JIV_D 57.1 6.1 0.00011 25.4 >4JIV_D Tail-associated lysozyme (E.C.3.2.1.17), Putative uncharacterized; PAAR-repeat motif, membrane piercing, type; HET: PLM, STE, ELA; 1.903A {Enterobacteria phage T4}
PVClopT_11 plu2395 PLT_02434 3H2T 3H2T_A 96.9 7.7e-06 1.3e-10 86.4 >3H2T_A Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVClopT_12 plu2396 PLT_02435 2K0B 2K0B_X 64.0 3.8 6.6e-05 34.8 >2K0B_X Sequestosome-1; ubiquitin binding, helical bundle, three; NMR {Homo sapiens} SCOP: a.5.2.1
PVClopT_14 plu2397 PLT_02436 5MDX 5MDX_8 30.5 31.0 0.00053 31.3 >5MDX_8 Photosystem II protein D1 (E.C.1.10.3.9); photosynthesis, photosystem II supercomplex, single; HET: CLA, CHL, PHO, HEM;{Arabidopsis thaliana}
PVClopT_15 plu2398 PLT_02437 5E7P 5E7P_B 99.8 5.6e-23 9.6e-28 203.2 >5E7P_B Cell division control protein Cdc48; AAA ATPase, M. Smegmatic, RecA; HET: PGE, GOL, ADP, PG4; 2.507A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
PVClopT_16 plu2399 PLT_02438 4XHF 4XHF_B 29.6 33.0 0.00057 30.5 >4XHF_B NA(+)-TRANSLOCATING NADH-QUINONE REDUCTASE SUBUNIT C; FMN, OXIDOREDUCTASE, COVALENT FLAVINYLATION; HET: FMN; 1.76A {Shewanella oneidensis}
PVClopT_17 plu2400 PLT_02439 2EBH 2EBH_X 100.0 8.7e-89 1.5e-93 699.6 >2EBH_X Dermonecrotic toxin; Pasteurella multocida toxin, Cys1165Ser mutant; HET: TRE; 2.4A {Pasteurella multocida} SCOP: d.3.1.17, c.150.1.2, a.296.1.1
PVClopT_18 plu2401 PLT_02440 1UKF 1UKF_A 99.8 6.9e-24 1.2e-28 177.7 >1UKF_A Avirulence protein AVRPPH3; AvrPphB, AvrPph3, Avirulence, Hypersensitive Response; 1.35A {Pseudomonas syringae pv. phaseolicola} SCOP: d.3.1.10
PVCunit1_1 plu1730 PLT_01758 5IV5 5IV5_S 99.4 1.9e-16 3.3e-21 108.5 >5IV5_S Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCunit1_2 plu1729 PLT_01757 3J9Q 3J9Q_C 100.0 2.8e-34 4.8e-39 243.7 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit1_3 plu1728 PLT_01756 3J9Q 3J9Q_Q 100.0 1.8e-33 3.2e-38 246.4 >3J9Q_Q sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit1_4 plu1727 PLT_01755 3J9Q 3J9Q_Q 99.9 7e-30 1.2e-34 219.6 >3J9Q_Q sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit1_5 plu1726 PLT_01754 5IV5 5IV5_F 99.1 7.5e-14 1.3e-18 96.0 >5IV5_FH Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCunit1_6 plu1725 PLT_01753 1USD 1USD_A 46.6 12 0.0002 21.4 >1USD_A VASODILATOR-STIMULATED PHOSPHOPROTEIN; SIGNALING PROTEIN, PHOSPHORYLATION, ACTIN-BINDING, KINASE; 1.7A {HOMO SAPIENS} SCOP: h.1.29.1
PVCunit1_7 plu1724 PLT_01752 5A3A 5A3A_A 43.3 14 0.00024 30.0 >5A3A_A SIR2 FAMILY PROTEIN (E.C.2.4.2.30); TRANSFERASE, P-RIBOSYLTRANSFERASE, METALLOPROTEIN, NAD-DEPENDENT, LIPOYLATION; HET: EDO, GLY; 1.54A {STREPTOCOCCUS PYOGENES}
PVCunit1_8 plu1723 PLT_01751 2P5Z 2P5Z_X 99.9 1.1e-30 2e-35 234.8 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVCunit1_9 plu1722 PLT_01750 5IV5 5IV5_I 99.3 3e-15 5.1e-20 106.8 >5IV5_IC Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCunit1_10 plu1721 PLT_01749 1I24 1I24_A 40.8 17 0.00028 27.5 >1I24_A SULFOLIPID BIOSYNTHESIS PROTEIN SQD1, NICOTINAMIDE-ADENINE-DINUCLEOTIDE; SDR, SHORT-CHAIN DEHYDROGENASE/REDUCTASE, ROSSMANN FOLD; HET: NAD, UPG, SO4; 1.2A {Arabidopsis thaliana} SCOP: c.2.1.2
PVCunit1_11 plu1720 PLT_01748 3H2T 3H2T_A 95.3 0.0012 2e-08 67.6 >3H2T_A Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVCunit1_12 plu1719 PLT_01747 2FFM 2FFM_A 56.2 6.5 0.00011 34.4 >2FFM_A SAV1430; alpha-beta protein., Structural Genomics, PSI; 2.51A {Staphylococcus aureus subsp. aureus Mu50} SCOP: d.267.1.1
PVCunit1_13 plu1718 PLT_01746 2FKK 2FKK_A 97.3 1.4e-06 2.4e-11 76.8 >2FKK_A Baseplate structural protein Gp10; Bacteriophage T4 Baseplate ; HET: EDO; 1.2A {Enterobacteria phage T4}
PVCunit1_14 plu1717 PLT_01745 2LXT 2LXT_C 12.6 130.0 0.0023 22.7 >2LXT_C CREB-binding protein (E.C.2.3.1.48), Histone-lysine N-methyltransferase; CREB binding protein, mixed-lineage leukemia; NMR {Homo sapiens}
PVCunit1_15 plu1716 PLT_01744 5E7P 5E7P_B 99.7 1.5e-21 2.6e-26 193.2 >5E7P_B Cell division control protein Cdc48; AAA ATPase, M. Smegmatic, RecA; HET: PGE, GOL, ADP, PG4; 2.507A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
PVCunit1_16 plu1715 PLT_01743 3GGM 3GGM_C 48.7 10 0.00018 24.9 >3GGM_C uncharacterized protein BT9727_2919; Bacillus cereus group., Structural Genomics; 2.0A {Bacillus thuringiensis serovar konkukian}
PVCunit1_17 plu1714 PLT_01742 1EB6 1EB6_A 83.9 0.45 7.7e-06 31.5 >1EB6_A NEUTRAL PROTEASE II (E.C.3.4.24.39); METALLOPROTEINASE, NEUTRAL PROTEASE II, HYDROLASE; HET: EDO; 1.0A {ASPERGILLUS ORYZAE} SCOP: d.92.1.12
PVCunit1_18 plu1713 PLT_01741 3IM4 3IM4_C 41.0 16.0 0.00028 26.3 >3IM4_C cAMP-dependent protein kinase type I-alpha; four-helix bundle, cAMP, cAMP-binding, Disulfide; 2.285A {Bos taurus}
PVCunit1_19 plu1712 PLT_01740 2COL 2COL_A 96.9 1e-05 1.8e-10 76.0 >2COL_A Bifunctional hemolysin-adenylate cyclase (E.C.4.6.1.1); LYASE, Calcium binding, LYASE-METAL BINDING; 2.2A {Bordetella pertussis}
PVCunit2_1 plu1708 PLT_01736 5W5F 5W5F_J 99.4 3.6e-17 6.2e-22 112.1 >5W5F_J Tail tube protein gp19; T4 tail tube, dose limit;{Enterobacteria phage T4 sensu lato}
PVCunit2_2 plu1707 PLT_01735 3J9Q 3J9Q_Q 99.9 9.9e-33 1.7e-37 234.5 >3J9Q_Q sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit2_3 plu1706 PLT_01734 3J9Q 3J9Q_Q 100.0 1.2e-33 2.1e-38 249.3 >3J9Q_Q sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit2_4 plu1705 PLT_01733 3J9Q 3J9Q_C 99.9 3.1e-29 5.4e-34 216.1 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit2_5 plu1704 PLT_01732 5IV5 5IV5_R 98.9 1.1e-12 1.9e-17 90.3 >5IV5_R Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCunit2_6 plu1703 PLT_01731 4E71 4E71_A 46.2 12 0.00021 23.4 >4E71_A Plexin-B2; plexin, transmembrane, signaling, rbd, Structural; 2.26A {Homo sapiens}
PVCunit2_7 plu1702 PLT_01730 5A3A 5A3A_A 66.3 3.2 5.5e-05 33.6 >5A3A_A SIR2 FAMILY PROTEIN (E.C.2.4.2.30); TRANSFERASE, P-RIBOSYLTRANSFERASE, METALLOPROTEIN, NAD-DEPENDENT, LIPOYLATION; HET: EDO, GLY; 1.54A {STREPTOCOCCUS PYOGENES}
PVCunit2_8 plu1701 PLT_01729 2P5Z 2P5Z_X 99.9 4.8e-31 8.3e-36 237.2 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVCunit2_9 plu1700 PLT_01728 2IA7 2IA7_A 99.6 3.5e-19 6.1e-24 120.5 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVCunit2_10 plu1699 PLT_01727 5C2Y 5C2Y_A 34.4 24 0.00042 27.3 >5C2Y_A RNA polymerase II subunit B1; regulator of transcription, zinc finger; HET: SO4; 2.6A {Saccharomyces cerevisiae}
PVCunit2_11 plu1698 PLT_01726 3H2T 3H2T_A 96.2 0.00013 2.3e-09 74.3 >3H2T_A Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVCunit2_12 plu1697 PLT_01725 2RIL 2RIL_A 24.5 47.0 0.00081 25.2 >2RIL_A Antibiotic biosynthesis monooxygenase; YP_001095275.1, Putative monooxygenase, Antibiotic biosynthesis; 1.26A {Shewanella loihica}
PVCunit2_13 plu1696 PLT_01724 1V1H 1V1H_E 95.2 0.0016 2.7e-08 52.2 >1V1H_E FIBRITIN, FIBER PROTEIN; ADENOVIRUS, CHIMERA, FIBER PROTEIN; 1.9A {HUMAN ADENOVIRUS TYPE 2, BACTERIOPHAGE T4} SCOP: h.1.17.1, b.83.1.1
PVCunit2_14 plu1695 PLT_01723 3K9K 3K9K_A 99.7 2.7e-22 4.7e-27 146.1 >3K9K_A Histone-lysine N-methyltransferase SETMAR (E.C.2.1.1.43); transposase, Chromatin regulator, DNA damage; 2.55A {Homo sapiens}
PVCunit2_15 plu1694 PLT_01722 1GYZ 1GYZ_A 18.2 77.0 0.0013 24.4 >1GYZ_A 50S RIBOSOMAL PROTEIN L20; RIBOSOMAL PROTEIN, RIBOSOME, PROTEIN SYNTHESIS; NMR {AQUIFEX AEOLICUS} SCOP: a.144.2.1
PVCunit2_16 plu1693 PLT_01721 5GJR 5GJR_0 99.7 2.2e-21 3.8e-26 188.0 >5GJR_0 26S protease regulatory subunit 4; protein complex, human proteasome, HYDROLASE; HET: ADP; 3.5A {Homo sapiens}
PVCunit2_17 plu1692 PLT_01720 3GGM 3GGM_D 76.6 1.2 2.1e-05 29.3 >3GGM_D uncharacterized protein BT9727_2919; Bacillus cereus group., Structural Genomics; 2.0A {Bacillus thuringiensis serovar konkukian}
PVCunit2_18 plu1691 PLT_01719 2GUT 2GUT_A 48.5 10 0.00018 28.7 >2GUT_A Positive cofactor 2 glutamine/Q-rich-associated protein; KIX, 3 HELICAL BUNDLE, TRANSCRIPTION; NMR {Homo sapiens}
PVCunit2_19 plu1690 PLT_01718 3ONQ 3ONQ_B 55.9 6.6 0.00011 22.6 >3ONQ_B Regulator of polyketide synthase expression; Structural Genomics, PSI-2, Protein Structure; HET: SO4, GOL; 2.098A {Bifidobacterium adolescentis}
PVCunit2_20 plu1689 PLT_01717 5MBV 5MBV_A 36.3 22 0.00037 30.0 >5MBV_A RecBCD enzyme subunit RecB (E.C.3.1.11.5); Inhibitor, Complex, DNA repair, Helicase/Nuclease;{Escherichia coli}
PVCunit3_1 plu1689 PLT_01716 5IV5 5IV5_I 99.4 3e-16 5.2e-21 107.5 >5IV5_IA Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCunit3_2 plu1688 PLT_01715 3J9Q 3J9Q_Q 100.0 1.8e-33 3.2e-38 239.2 >3J9Q_Q sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit3_3 plu1687 PLT_01714 3J9Q 3J9Q_Q 100.0 2.1e-33 3.6e-38 245.9 >3J9Q_Q sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit3_4 plu1686 PLT_01713 3J9Q 3J9Q_C 99.9 1e-29 1.8e-34 218.4 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit3_5 plu1685 PLT_01712 5IV5 5IV5_B 98.8 3.1e-12 5.3e-17 88.0 >5IV5_BB Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCunit3_6 plu1684 PLT_01711 2E3P 2E3P_B 77.2 1.2 2e-05 26.9 >2E3P_B Lipid-transfer protein CERT; LIPID TRANSFER PROTEIN, CERT, CERAMIDE; HET: 16C; 1.4A {Homo sapiens}
PVCunit3_7 plu1683 PLT_01710 1FLT 1FLT_Y 32.8 27 0.00046 23.6 >1FLT_Y VASCULAR ENDOTHELIAL GROWTH FACTOR, FMS-LIKE; COMPLEX (GROWTH FACTOR-TRANSFERASE), FLT-1 RECEPTOR; 1.7A {Homo sapiens} SCOP: b.1.1.4
PVCunit3_8 plu1682 PLT_01709 2P5Z 2P5Z_X 99.9 7.9e-32 1.4e-36 242.2 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVCunit3_9 plu1681 PLT_01708 2IA7 2IA7_A 99.5 1.3e-18 2.3e-23 116.2 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVCunit3_10 plu1680 PLT_01707 4IX9 4IX9_A 39.7 18 0.0003 24.8 >4IX9_A V-type proton ATPase subunit F; V-ATPase, stalk subunit, subunit F; HET: TRS, GOL; 2.33A {Saccharomyces cerevisiae}
PVCunit3_11 plu1679 PLT_01706 3H2T 3H2T_A 95.8 0.00041 7e-09 70.9 >3H2T_A Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVCunit3_12 plu1678 PLT_01705 3TPZ 3TPZ_A 27.1 39 0.00067 31.0 >3TPZ_A Ribosomal RNA small subunit methyltransferase; rRNA adenine dimethyltransferase, ribogenesis, TRANSFERASE; 2.1A {Escherichia coli}
PVCunit3_13 plu1677 PLT_01704 2FKK 2FKK_A 96.7 2.6e-05 4.4e-10 67.0 >2FKK_A Baseplate structural protein Gp10; Bacteriophage T4 Baseplate ; HET: EDO; 1.2A {Enterobacteria phage T4}
PVCunit3_14 plu1676 PLT_01703 5US5 5US5_B 18.3 76.0 0.0013 27.8 >5US5_B UPF0297 protein EF_1202; IreB, dimer, Structural Genomics, PSI-2; NMR {Enterococcus faecalis (strain ATCC 700802 / V583)}
PVCunit3_15 plu1675 PLT_01702 5E7P 5E7P_B 99.7 1.7e-22 2.9e-27 199.8 >5E7P_B Cell division control protein Cdc48; AAA ATPase, M. Smegmatic, RecA; HET: PGE, GOL, ADP, PG4; 2.507A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
PVCunit3_16 plu1674 PLT_01701 2OPA 2OPA_A 49.4 9.9 0.00017 22.5 >2OPA_A Probable tautomerase ywhB (E.C.5.3.2.-); homohexamer, 4-Oxalocrotonate Tautomerase, inhibitor, 2-Fluoro-p-Hydroxycinnamate; HET: FHC; 2.4A {Bacillus subtilis}
PVCunit3_17 plu1673 PLT_01700 5XXB 5XXB_e 50.5 9.2 0.00016 26.4 >5XXB_e uL2, uL3, uL4, uL18, eL6; parasitic ribosome, rRNA, rproteins, RIBOSOME; 3.17A {Toxoplasma gondii}
PVCunit3_18 plu1672 PLT_01699 4Q2G 4Q2G_A 27.6 38.0 0.00065 30.4 >4Q2G_A Phosphatidate cytidylyltransferase (E.C.2.7.7.41); intramembrane enzyme, CdsA fold, phospholipid; HET: BNG; 3.4A {Thermotoga maritima MSB8}
PVCunit3_19 plu1671 PLT_01698 2W8M 2W8M_B 24.2 48.0 0.00082 31.1 >2W8M_B ORF D212; SSV1, CRENARCHAEAL VIRUS, HYDROLASE; 2.4A {SULFOLOBUS VIRUS RAGGED HILLS}
PVCunit4_1 plu1667 PLT_01696 5IV5 5IV5_B 99.4 2.9e-17 5e-22 112.6 >5IV5_BB Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCunit4_2 plu1666 PLT_01695 3J9Q 3J9Q_Q 99.9 3.9e-33 6.8e-38 237.2 >3J9Q_Q sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit4_3 plu1665 PLT_01694 3J9Q 3J9Q_Q 100.0 1.6e-34 2.7e-39 254.0 >3J9Q_Q sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit4_4 plu1664 PLT_01693 3J9Q 3J9Q_C 99.9 2e-29 3.5e-34 217.9 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit4_5 plu1663 PLT_01692 5IV5 5IV5_B 98.9 5.8e-13 9.9e-18 91.6 >5IV5_BC Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCunit4_6 plu1662 PLT_01691 1USD 1USD_A 44.2 13 0.00023 21.2 >1USD_A VASODILATOR-STIMULATED PHOSPHOPROTEIN; SIGNALING PROTEIN, PHOSPHORYLATION, ACTIN-BINDING, KINASE; 1.7A {HOMO SAPIENS} SCOP: h.1.29.1
PVCunit4_7 plu1661 PLT_01690 5A3A 5A3A_A 63.6 3.9 6.8e-05 33.1 >5A3A_A SIR2 FAMILY PROTEIN (E.C.2.4.2.30); TRANSFERASE, P-RIBOSYLTRANSFERASE, METALLOPROTEIN, NAD-DEPENDENT, LIPOYLATION; HET: EDO, GLY; 1.54A {STREPTOCOCCUS PYOGENES}
PVCunit4_8 plu1660 PLT_01689 2P5Z 2P5Z_X 99.9 1.4e-32 2.4e-37 247.1 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVCunit4_9 plu1659 PLT_01688 2IA7 2IA7_A 99.6 4.8e-19 8.2e-24 119.9 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVCunit4_10 plu1658 PLT_01687 5C2Y 5C2Y_A 32.0 28 0.00049 26.9 >5C2Y_A RNA polymerase II subunit B1; regulator of transcription, zinc finger; HET: SO4; 2.6A {Saccharomyces cerevisiae}
PVCunit4_11 plu1657 PLT_01686 3H2T 3H2T_A 96.0 0.00026 4.6e-09 72.2 >3H2T_A Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVCunit4_12 plu1656 PLT_01685 4H3K 4H3K_B 28.9 34.0 0.00059 36.0 >4H3K_B Symplekin, RNA polymerase II subunit; Heat repeat, phosphatase, RNA polymerase; 2.0A {Homo sapiens}
PVCunit4_13 plu1655 PLT_01684 2FKK 2FKK_A 97.1 2.8e-06 4.9e-11 74.3 >2FKK_A Baseplate structural protein Gp10; Bacteriophage T4 Baseplate ; HET: EDO; 1.2A {Enterobacteria phage T4}
PVCunit4_14 plu1654 PLT_01683 2BPT 2BPT_B 15.6 97.0 0.0017 24.5 >2BPT_B IMPORTIN BETA-1 SUBUNIT, NUCLEOPORIN NUP1; NUCLEAR TRANSPORT, NUCLEOCYTOPLASMIC TRANSPORT, NUCLEAR; 1.99A {SACCHAROMYCES CEREVISIAE}
PVCunit4_15 plu1653 PLT_01682 5E7P 5E7P_A 99.7 1e-21 1.8e-26 194.5 >5E7P_A Cell division control protein Cdc48; AAA ATPase, M. Smegmatic, RecA; HET: PGE, GOL, ADP, PG4; 2.507A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
PVCunit4_16 plu1652 PLT_01681 3FM2 3FM2_A 41.1 16 0.00028 28.0 >3FM2_A Uncharacterized protein, distantly related to; STRUCTURAL GENOMICS, JOINT CENTER FOR; HET: ACT; 1.8A {Anabaena variabilis ATCC 29413}
PVCunit4_17 plu1651 PLT_01680 2I88 2I88_A 56.2 6.5 0.00011 35.4 >2I88_A Colicin-E1; protein-membrane interactions, toxin-membrane interactions, toxin; 2.5A {Escherichia coli}
PVCpnf_1 PAU_03353 PAU_03392 5IV5 5IV5_B 99.4 1.6e-16 2.8e-21 108.8 >5IV5_BB Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCpnf_2 PAU_03352 PAU_03391 3J9Q 3J9Q_D 100.0 3.4e-34 6e-39 243.2 >3J9Q_D sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCpnf_3 PAU_03351 PAU_03390 3J9Q 3J9Q_D 99.9 8.4e-32 1.5e-36 234.4 >3J9Q_D sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCpnf_4 PAU_03350 PAU_03389 3J9Q 3J9Q_D 99.9 8.8e-28 1.6e-32 207.6 >3J9Q_D sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCpnf_5 PAU_03349 PAU_03388 5IV5 5IV5_I 99.0 2.3e-13 4e-18 93.6 >5IV5_IA Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCpnf_6 PAU_03348 PAU_03387 3SLS 3SLS_B 75.1 1.4 2.5e-05 26.7 >3SLS_B Dual specificity mitogen-activated protein kinase; Serine-threonine kinase, Signalling, TRANSFERASE-TRANSFERASE INHIBITOR; HET: 77D, ANP; 2.3A {Homo sapiens}
PVCpnf_7 PAU_03347 PAU_03386 3KXY 3KXY_T 43.4 14.0 0.00024 28.1 >3KXY_T Exoenzyme S synthesis protein C; type-three secretion system, TTSS, T3SS; 2.804A {Pseudomonas aeruginosa}
PVCpnf_8 PAU_03346 PAU_03385 2P5Z 2P5Z_X 99.9 3.2e-28 5.7e-33 219.2 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVCpnf_9 PAU_03345 PAU_03384 2IA7 2IA7_A 99.5 3.4e-18 6e-23 113.3 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVCpnf_10 PAU_03344 PAU_03383 1WEY 1WEY_A 71.0 2.1 3.7e-05 26.9 >1WEY_A calcipressin 1; structural genomics, RRM domain, calcipressin; NMR {Mus musculus} SCOP: d.58.7.1
PVCpnf_11 PAU_03343 PAU_03382 5IV5 5IV5_G 96.4 7.2e-05 1.3e-09 79.3 >5IV5_GE Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCpnf_12 PAU_03342 PAU_03381 5CER 5CER_K 30.8 29 0.00052 35.6 >5CER_K Bd0816 (E.C.3.4.16.4), Bd3460; transpeptidase and ankyrin repeat, immune; 2.48A {Bdellovibrio bacteriovorus HD100}
PVCpnf_13 PAU_03341 PAU_03380 1PDI 1PDI_P 93.7 0.011 2e-07 55.7 >1PDI_P Short tail fiber protein; STRUCTURAL PROTEIN; 12.0A {Enterobacteria phage T4} SCOP: i.19.1.1
PVCpnf_14 PAU_03340 PAU_03379 3C9P 3C9P_A 28.5 34.0 0.00061 31.5 >3C9P_A Uncharacterized protein SP1917; Streptococcus pneumoniae, SP_1917, Structural Genomics; 1.96A {Streptococcus pneumoniae}
PVCpnf_15 PAU_03339 PAU_03378 5E7P 5E7P_A 99.7 6.5e-22 1.2e-26 195.8 >5E7P_A Cell division control protein Cdc48; AAA ATPase, M. Smegmatic, RecA; HET: PGE, PG4, ADP, GOL; 2.507A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
PVCpnf_16 PAU_03338 PAU_03377 3UV1 3UV1_B 22.7 51 0.00092 25.1 >3UV1_B Der f 7 allergen; Super-roll, ALLERGEN; HET: MSE; 2.0A {Dermatophagoides farinae}
PVCpnf_17 PAU_03337 PAU_03376 2COL 2COL_A 96.8 1.5e-05 2.6e-10 74.8 >2COL_A Bifunctional hemolysin-adenylate cyclase (E.C.4.6.1.1); LYASE, Calcium binding, LYASE-METAL BINDING; 2.2A {Bordetella pertussis}
PVCpnf_18 PAU_03336 PAU_03375 2I0X 2I0X_A 69.5 2.4 4.2e-05 24.4 >2I0X_A HYPOTHETICAL PROTEIN PF1117 FROM PYROCOCCUS; PF1117, HYPOTHETICAL PROTEIN, PYROCOCCUS FURIOSUS; 2.7A {Pyrococcus furiosus} SCOP: d.58.58.1
PVCpnf_19 PAU_03334 PAU_03374 3L3U 3L3U_A 70.4 2.2 3.9e-05 22.6 >3L3U_A POL polyprotein; DNA INTEGRATION, AIDS, INTEGRASE, ENDONUCLEASE; HET: SO4; 1.4A {Human immunodeficiency virus 1}
PVCpnf_20 PAU_03333 PAU_03373 3T1B 3T1B_C 99.7 7.3e-21 1.3e-25 118.1 >3T1B_C Transcriptional regulator, LysR family; winged helix, virulence, TRANSCRIPTION; 2.7A {Vibrio cholerae}
PVCpnf_21 PAU_03332 PAU_03372 1HZG 1HZG_A 100.0 1.7e-54 3.1e-59 391.2 >1HZG_A CYTOTOXIC NECROTIZING FACTOR 1; Beta Sandwich, Rho Deamidase, Rho; HET: PO4; 1.86A {Escherichia coli} SCOP: d.194.1.1
PVCpnf_22 PAU_03331 PAU_03371 1JEO 1JEO_A 57.2 5.9 0.0001 23.6 >1JEO_A HYPOTHETICAL PROTEIN MJ1247; RuMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase; HET: CIT; 2.0A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
PVCpnf_23 PAU_03330 PAU_03370 1XJU 1XJU_B 100.0 4e-40 7.2e-45 226.9 >1XJU_B Lysozyme (E.C.3.2.1.17); secreted inactive conformation, HYDROLASE; HET: SO4; 1.07A {Enterobacteria phage P1} SCOP: d.2.1.3
PVCpnf_24 PAU_03329 PAU_03369 3VP9 3VP9_A 52.5 7.9 0.00014 29.8 >3VP9_A General transcriptional corepressor TUP1; Four helix bundle, TRANSCRIPTION; HET: DIO; 1.799A {Saccharomyces cerevisiae}
PVCcif_1 PAU_01993 PAU_01961 5IV5 5IV5_S 99.6 7.5e-19 1.3e-23 120.3 >5IV5_S Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCcif_2 PAU_01994 PAU_01962 3J9Q 3J9Q_D 99.9 3e-31 5.4e-36 225.9 >3J9Q_D sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCcif_3 PAU_01995 PAU_01963 3J9Q 3J9Q_D 99.9 3.6e-28 6.4e-33 214.6 >3J9Q_D sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCcif_4 PAU_01996 PAU_01964 3J9Q 3J9Q_D 99.9 9.5e-29 1.7e-33 212.9 >3J9Q_D sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCcif_5 PAU_01997 PAU_01965 5IV5 5IV5_S 99.0 3.6e-13 6.4e-18 92.6 >5IV5_S Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCcif_6 PAU_01998 PAU_01966 1IV8 1IV8_A 42.6 14 0.00026 29.0 >1IV8_A MALTOOLIGOSYL TREHALOSE SYNTHASE(E.C.5.4.99.15); TREHALOSE SYNTHASE, BETA ALPHA BARREL; 1.9A {Sulfolobus acidocaldarius} SCOP: c.1.8.1, b.71.1.1
PVCcif_7 PAU_01999 PAU_01967 5A3A 5A3A_A 62.8 4 7.1e-05 33.0 >5A3A_A SIR2 FAMILY PROTEIN (E.C.2.4.2.30); TRANSFERASE, P-RIBOSYLTRANSFERASE, METALLOPROTEIN, NAD-DEPENDENT, LIPOYLATION; HET: EDO, GLY; 1.54A {STREPTOCOCCUS PYOGENES}
PVCcif_8 PAU_02000 PAU_01968 2P5Z 2P5Z_X 99.9 3.3e-29 5.9e-34 225.3 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVCcif_9 PAU_02001 PAU_01969 2IA7 2IA7_A 99.6 5.7e-20 1e-24 122.6 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVCcif_10 PAU_02002 PAU_01970 1JWB 1JWB_B 40.6 16 0.00029 24.8 >1JWB_B MOLYBDOPTERIN BIOSYNTHESIS MOEB PROTEIN, MOLYBDOPTERIN; MoeB: modified Rossmann fold ; HET: AMP; 2.1A {Escherichia coli} SCOP: c.111.1.1
PVCcif_11 PAU_02003 PAU_01971 3H2T 3H2T_B 96.3 0.00011 1.9e-09 74.9 >3H2T_B Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVCcif_12 PAU_02004 PAU_01972 4ORL 4ORL_A 57.3 5.8 0.0001 36.3 >4ORL_A Uncharacterized protein; PF16022 family, DUF4783, Structural Genomics; 1.4A {Bacteroides ovatus}
PVCcif_13 PAU_02005 PAU_01973 2FKK 2FKK_A 97.0 4.9e-06 8.7e-11 69.7 >2FKK_A Baseplate structural protein Gp10; Bacteriophage T4 Baseplate ; HET: EDO; 1.2A {Enterobacteria phage T4}
PVCcif_14 PAU_02006 PAU_01974 2KO0 2KO0_A 19.0 69.0 0.0012 23.9 >2KO0_A THAP domain-containing protein 1, RRM1; Zinc finger, Protein-DNA complex, DNA; HET: ZN; NMR {Homo sapiens}
PVCcif_15 PAU_02007 PAU_01975 5E7P 5E7P_A 99.7 3.3e-22 5.8e-27 197.6 >5E7P_A Cell division control protein Cdc48; AAA ATPase, M. Smegmatic, RecA; HET: PGE, PG4, ADP, GOL; 2.507A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
PVCcif_16 PAU_02008 PAU_01976 4V9F 4V9F_6 51.5 8.3 0.00015 27.2 >4V9F_6 PROTEIN/RNA Complex; 50S ribosomal subunit, ribonucleoprotein, ribosomal; HET: ACY, CL, 1MA, NA, MG, OMU, OMG, PSU, UR3; 2.404A {Haloarcula marismortui}
PVCcif_17 PAU_02009 PAU_01977 4FBJ 4FBJ_A 100.0 1.9e-98 3e-103 664.7 >4FBJ_A Hypothetical protein, NEDD8; Effector-Host target complex, Glutamine deamidase; 1.6A {Photorhabdus luminescens subsp. laumondii}
PVCcif_18 PAU_02010 PAU_01978 1IRG 1IRG_A 35.8 21 0.00038 28.6 >1IRG_A INTERFERON REGULATORY FACTOR-2; TRANSCRIPTION REGULATION, WINGED HELIX-TURN-HELIX; NMR {Mus musculus} SCOP: a.4.5.23
PVCcif_19 PAU_02011 PAU_01979 4JXJ 4JXJ_A 43.6 13 0.00024 30.9 >4JXJ_A Ribosomal RNA small subunit methyltransferase; Structural Genomics, NIAID, National Institute; HET: IOD; 2.0A {Rickettsia bellii}
PVCcif_20 PAU_02012 PAU_01980 3IKM 3IKM_A 30.2 30 0.00054 33.8 >3IKM_A DNA polymerase subunit gamma-1 (E.C.2.7.7.7); Human mitochondrial DNA polymerase, Disease; 3.24A {Homo sapiens}
PVClumt_0 PAU_02249 PAU_02208 1HF2 1HF2_B 67.1 2.9 5.2e-05 37.5 >1HF2_B SEPTUM SITE-DETERMINING PROTEIN MINC; CELL DIVISION PROTEIN, FTSZ, SEPTUM; 2.2A {THERMOTOGA MARITIMA} SCOP: b.80.3.1, c.102.1.1
PVClumt_1 PAU_02247 PAU_02206 5IV5 5IV5_B 99.4 6e-17 1.1e-21 110.9 >5IV5_BC Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVClumt_2 PAU_02246 PAU_02205 3J9Q 3J9Q_D 99.9 5.1e-29 9.1e-34 218.0 >3J9Q_D sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVClumt_4 PAU_02245 PAU_02204 3J9Q 3J9Q_D 99.8 8.8e-26 1.6e-30 194.0 >3J9Q_D sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVClumt_5 PAU_02244 PAU_02203 5IV5 5IV5_F 99.1 9.9e-14 1.8e-18 95.7 >5IV5_FI Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVClumt_6 PAU_02243 PAU_02202 1USD 1USD_A 70.0 2.3 4.1e-05 24.3 >1USD_A VASODILATOR-STIMULATED PHOSPHOPROTEIN; SIGNALING PROTEIN, PHOSPHORYLATION, ACTIN-BINDING, KINASE; 1.7A {HOMO SAPIENS} SCOP: h.1.29.1
PVClumt_7 PAU_02242 PAU_02201 3D1B 3D1B_B 28.0 35.0 0.00063 28.4 >3D1B_B RNA-induced transcriptional silencing complex protein; all alpha motif, RITS complex; 1.7A {Schizosaccharomyces pombe}
PVClumt_8 PAU_02241 PAU_02200 2P5Z 2P5Z_X 99.8 1.5e-23 2.8e-28 188.1 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVClumt_9 PAU_02240 PAU_02199 2IA7 2IA7_A 99.5 6.6e-18 1.2e-22 112.8 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVClumt_10 afp10 PAU_02198 1B0A 1B0A_A 55.5 6.5 0.00012 30.1 >1B0A_A 5,10, METHYLENE-TETRAHYDROPHOLATE DEHYDROGENASE/CYCLOHYDROLASE FROM E; FOLATE, DEHYDROGENASE, CYCLCOHYDROLASE, BIFUNCTIONAL, CHANNELING; 2.56A {Escherichia coli K12} SCOP: c.2.1.7, c.58.1.2
PVClumt_11 afp11 PAU_02197 3H2T 3H2T_B 95.8 0.0004 7.1e-09 68.0 >3H2T_B Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVClumt_12 PAU_02237 PAU_02196 1FHO 1FHO_A 28.4 34 0.00061 27.2 >1FHO_A UNC-89; Pleckstrin Homology domain, electrostatics, muscle; NMR {Caenorhabditis elegans} SCOP: b.55.1.1
PVClumt_13 PAU_02236 PAU_02195 1V1H 1V1H_E 96.0 0.00027 4.9e-09 53.9 >1V1H_E FIBRITIN, FIBER PROTEIN; ADENOVIRUS, CHIMERA, FIBER PROTEIN; 1.9A {HUMAN ADENOVIRUS TYPE 2, BACTERIOPHAGE T4} SCOP: h.1.17.1, b.83.1.1
PVClumt_97 PAU_02235 PAU_02194 3NAR 3NAR_A 38.8 18 0.00032 27.2 >3NAR_A Zinc fingers and homeoboxes protein; ZHX1, corepressor, homeodomain, Structural Genomics; 2.6A {Homo sapiens}
PVClumt_98 PAU_02234 PAU_02193 4AK2 4AK2_A 68.5 2.6 4.6e-05 39.1 >4AK2_A BT_4661; HEPARIN-BINDING PROTEIN, HEPARAN SULPHATE; HET: IDS, SGN; 1.35A {BACTEROIDES THETAIOTAOMICRON}
PVClumt_99 PAU_02233 PAU_02192 4PAC 4PAC_A 17.2 81.0 0.0014 26.6 >4PAC_A histidine phosphotransfer protein 2 from; cytokinin signaling, helical fold, signaling; HET: MES; 2.53A {Arabidopsis thaliana}
PVClumt_15 PAU_02232 PAU_02191 5MP9 5MP9_I 99.7 1.1e-21 1.9e-26 189.5 >5MP9_I Proteasome subunit alpha type-1 (E.C.3.4.25.1); Macromolecular complex, 26S proteasome, Protease; HET: ATP, ADP; 4.1A {Saccharomyces cerevisiae (strain ATCC 204508 / S288c)}
PVClumt_16 PAU_02231 PAU_02190 1PDO 1PDO_A 57.1 5.9 0.0001 30.2 >1PDO_A MANNOSE PERMEASE; PHOSPHOENOLPYRUVATE DEPENDENT PHOSPHOTRANSFERASE SYSTEM, PHOSPHOTRANSFERASE; 1.7A {Escherichia coli} SCOP: c.54.1.1
PVClumt_17 PAU_02230 PAU_02189 4MIX 4MIX_A 100.0 3.5e-50 6.3e-55 429.5 >4MIX_A Putative insecticidal toxin (E.C.2.4.1.-); tyrosine glycosylation, UDP-GlcNAc, nucleotide-binding domain; HET: UD1; 1.8A {Photorhabdus asymbiotica subsp. asymbiotica}
PVClopT_1 PAU_02112 PAU_02074 5IV5 5IV5_S 99.4 5.1e-17 9.1e-22 110.8 >5IV5_S Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVClopT_2 PAU_02111 PAU_02073 3J9Q 3J9Q_D 100.0 7.5e-34 1.3e-38 240.5 >3J9Q_D sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVClopT_4 PAU_02110 PAU_02072 3J9Q 3J9Q_D 99.9 1.2e-30 2.1e-35 224.2 >3J9Q_D sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVClopT_5 PAU_02109 PAU_02071 5IV5 5IV5_R 99.0 4.6e-13 8.2e-18 92.0 >5IV5_R Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVClopT_6 PAU_02108 PAU_02070 5EUL 5EUL_E 64.4 3.5 6.3e-05 24.0 >5EUL_E SecA, SecY, SecE, AYC08; SecY, SecA, ATPase, channel, PROTEIN; HET: ADP, TBR; 3.7A {Bacillus subtilis (strain 168)}
PVClopT_7 PAU_02107 PAU_02069 1FLT 1FLT_Y 29.9 31 0.00056 23.2 >1FLT_Y VASCULAR ENDOTHELIAL GROWTH FACTOR, FMS-LIKE; COMPLEX (GROWTH FACTOR-TRANSFERASE), FLT-1 RECEPTOR; 1.7A {Homo sapiens} SCOP: b.1.1.4
PVClopT_8 PAU_02106 PAU_02068 2P5Z 2P5Z_X 99.9 7.5e-31 1.3e-35 235.8 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVClopT_9 PAU_02105 PAU_02067 2IA7 2IA7_A 99.6 5.3e-20 9.5e-25 121.9 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVClopT_10 PAU_02104 PAU_02066 5FMJ 5FMJ_B 50.9 8.7 0.00016 23.4 >5FMJ_B BCL-2-LIKE PROTEIN 1, BAK1 PROTEIN; BCL-XL, BAK, BH3 DOMAIN, APOPTOSIS; HET: EDO; 2.43A {HOMO SAPIENS}
PVClopT_11 PAU_02103 PAU_02065 3H2T 3H2T_B 96.4 7.9e-05 1.4e-09 78.8 >3H2T_B Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVClopT_12 PAU_02102 PAU_02064 2M6Q 2M6Q_A 38.8 18 0.00032 31.7 >2M6Q_A SAV1430; Structural Genomics, NORTHEAST STRUCTURAL GENOMICS; NMR {Staphylococcus aureus subsp. aureus}
PVClopT_14 PAU_02101 PAU_02063 2GOM 2GOM_B 21.2 58.0 0.001 26.8 >2GOM_B Fibrinogen-binding protein; three-helix closed bundle with left-hand; 1.25A {Staphylococcus aureus} SCOP: a.7.17.1
PVClopT_15 PAU_02100 PAU_02062 5E7P 5E7P_A 99.7 1.2e-21 2.2e-26 193.6 >5E7P_A Cell division control protein Cdc48; AAA ATPase, M. Smegmatic, RecA; HET: PGE, PG4, ADP, GOL; 2.507A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
PVClopT_16 PAU_02099 PAU_02061 3OIZ 3OIZ_A 23.6 48.0 0.00086 21.8 >3OIZ_A Antisigma-factor antagonist, STAS; PSI-2, Midwest Center for Structural; 1.65A {Rhodobacter sphaeroides}
PVClopT_17 PAU_02098 PAU_02060 2EBF 2EBF_X 100.0 2.1e-84 3.7e-89 667.6 >2EBF_X Dermonecrotic toxin; Pasteurella multocida toxin, Trojan horse-like; HET: TRE; 1.9A {Pasteurella multocida} SCOP: d.3.1.17, c.150.1.2, a.296.1.1
PVClopT_18 PAU_02097 PAU_02059 3PFY 3PFY_A 35.1 22.0 0.0004 29.0 >3PFY_A OTU domain-containing protein 5 (E.C.3.4.19.12); Structural Genomics, Structural Genomics Consortium; HET: PG4, PEG; 1.702A {Homo sapiens}
PVClopT_19 PAU_02096 PAU_02058 1UKF 1UKF_A 99.8 9.2e-25 1.6e-29 182.9 >1UKF_A Avirulence protein AVRPPH3; AvrPphB, AvrPph3, Avirulence, Hypersensitive Response; 1.35A {Pseudomonas syringae pv. phaseolicola} SCOP: d.3.1.10
PVClopT_20 PAU_02095 PAU_02057 4IGL 4IGL_D 100.0 1.9e-55 3.3e-60 420.2 >4IGL_D YenB, YenC2; Beta-Propeller, RHS, toxin complex, Toxin; HET: GOL; 2.49A {Yersinia}
PVCunit1_1 afp1 PAU_02775 5IV5 5IV5_F 99.5 1.8e-17 3.2e-22 113.5 >5IV5_FH Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCunit1_2 afp2 PAU_02776 3J9Q 3J9Q_D 100.0 1e-35 1.9e-40 252.7 >3J9Q_D sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit1_3 afp3 PAU_02777 3J9Q 3J9Q_D 100.0 9.5e-35 1.7e-39 254.8 >3J9Q_D sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit1_4 afp4 PAU_02778 3J9Q 3J9Q_D 99.9 3.7e-29 6.7e-34 215.6 >3J9Q_D sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit1_5 afp5 PAU_02779 5IV5 5IV5_S 99.1 1.1e-13 1.9e-18 95.1 >5IV5_S Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCunit1_6 afp7 PAU_02780 4E71 4E71_A 47.5 11 0.00019 23.5 >4E71_A Plexin-B2; plexin, transmembrane, signaling, rbd, Structural; 2.26A {Homo sapiens}
PVCunit1_7 afp7 PAU_02781 5A3A 5A3A_A 59.7 4.9 8.8e-05 32.5 >5A3A_A SIR2 FAMILY PROTEIN (E.C.2.4.2.30); TRANSFERASE, P-RIBOSYLTRANSFERASE, METALLOPROTEIN, NAD-DEPENDENT, LIPOYLATION; HET: EDO, GLY; 1.54A {STREPTOCOCCUS PYOGENES}
PVCunit1_8 PAU_02796 PAU_02782 2P5Z 2P5Z_X 99.9 2.6e-32 4.7e-37 245.2 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVCunit1_9 afp9 PAU_02783 2IA7 2IA7_A 99.6 4.4e-19 7.8e-24 118.4 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVCunit1_10 afp10 PAU_02784 1YOV 1YOV_A 43.2 14 0.00025 30.9 >1YOV_A Amyloid protein-binding protein 1, Ubiquitin-activating; ubiquitin, NEDD8, E1, APPBP1, UBA3; 2.6A {Homo sapiens} SCOP: c.111.1.2
PVCunit1_11 afp11 PAU_02785 3H2T 3H2T_B 96.4 6.7e-05 1.2e-09 76.4 >3H2T_B Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVCunit1_12 afp12 PAU_02786 2JY7 2JY7_A 22.9 51.0 0.00091 28.5 >2JY7_A Ubiquitin-binding protein p62; ubiquitin binding, ubiquitin associated domain; NMR {Homo sapiens} SCOP: a.5.2.1
PVCunit1_13 PAU_02801 PAU_02787 2FKK 2FKK_A 97.8 4.9e-08 8.7e-13 85.0 >2FKK_A Baseplate structural protein Gp10; Bacteriophage T4 Baseplate ; HET: EDO; 1.2A {Enterobacteria phage T4}
PVCunit1_14 orf25 PAU_02788 4I7W 4I7W_B 24.8 44.0 0.00079 30.2 >4I7W_B Dihydrodipicolinate synthase (E.C.4.2.1.52); TIM BARREL, lysine biosynthesis, pyruvate; HET: LYS; 1.3A {Agrobacterium sp.}
PVCunit1_15 PAU_02803 PAU_02789 5E7P 5E7P_A 99.8 7.5e-24 1.3e-28 209.3 >5E7P_A Cell division control protein Cdc48; AAA ATPase, M. Smegmatic, RecA; HET: PGE, PG4, ADP, GOL; 2.507A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
PVCunit1_16 PAU_02804 PAU_02790 3FM2 3FM2_A 24.5 45.0 0.0008 25.5 >3FM2_A Uncharacterized protein, distantly related to; STRUCTURAL GENOMICS, JOINT CENTER FOR; HET: ACT; 1.8A {Anabaena variabilis ATCC 29413}
PVCunit1_17 hrpN PAU_02791 2I88 2I88_A 79.9 0.8 1.4e-05 40.9 >2I88_A Colicin-E1; protein-membrane interactions, toxin-membrane interactions, toxin; 2.5A {Escherichia coli}
PVCunit1_18 PAU_02806 PAU_02792 5SVA 5SVA_V 36.3 21 0.00037 31.7 >5SVA_V DNA-directed RNA polymerase II subunit; Transcriptional Initiation, Mediator, Pre-Initiation Complex; 15.3A {Saccharomyces cerevisiae}
PVCunit1_19 PAU_02807 PAU_02793 5E24 5E24_D 26.0 40.0 0.00072 24.2 >5E24_D Maltose-binding periplasmic protein, Protein hairless; Notch Signaling, Suppressor of Hairless; HET: MTT, EDO; 2.14A {Escherichia coli O157:H7}
PVCunit1_20 PAU_02808 PAU_02794 1UQX 1UQX_A 100.0 1e-35 1.8e-40 237.8 >1UQX_A LECTIN; LECTIN, SUGAR-BINDING PROTEIN, ALPHA-METHYL-MANNOSIDE, SUGAR; HET: MMA; 1.7A {RALSTONIA SOLANACEARUM} SCOP: b.115.1.1
PVCpnf_1 PAK_3544 PAK_03203 5IV5 5IV5_S 99.4 4.5e-17 8e-22 111.5 >5IV5_S Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCpnf_2 PAK_3543 PAK_03202 3J9Q 3J9Q_D 100.0 5.3e-34 9.6e-39 241.9 >3J9Q_D sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCpnf_3 PAK_3542 PAK_03201 3J9Q 3J9Q_D 99.9 4.3e-31 7.7e-36 230.3 >3J9Q_D sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCpnf_4 PAK_3541 PAK_03200 3J9Q 3J9Q_D 99.9 2.2e-28 3.9e-33 210.9 >3J9Q_D sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCpnf_5 PAK_3540 PAK_03199 5IV5 5IV5_B 99.0 2e-13 3.6e-18 93.8 >5IV5_BC Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCpnf_6 PAK_3539 PAK_03198 3SLS 3SLS_B 75.1 1.4 2.5e-05 26.7 >3SLS_B Dual specificity mitogen-activated protein kinase; Serine-threonine kinase, Signalling, TRANSFERASE-TRANSFERASE INHIBITOR; HET: 77D, ANP; 2.3A {Homo sapiens}
PVCpnf_7 PAK_3538 PAK_03197 4LID 4LID_B 25.8 41.0 0.00073 27.5 >4LID_B A-100; VIRAL PROTEIN, Hyperthermophilic viral protein; 3.0A {Sulfolobus spindle-shaped virus 1}
PVCpnf_8 PAK_3537 PAK_03196 2P5Z 2P5Z_X 99.9 2.1e-28 3.7e-33 220.4 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVCpnf_9 PAK_3536 PAK_03195 2IA7 2IA7_A 99.5 7.9e-18 1.4e-22 111.5 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVCpnf_10 PAK_3535 PAK_03194 1UKF 1UKF_A 56.9 5.9 0.00011 30.5 >1UKF_A Avirulence protein AVRPPH3; AvrPphB, AvrPph3, Avirulence, Hypersensitive Response; 1.35A {Pseudomonas syringae pv. phaseolicola} SCOP: d.3.1.10
PVCpnf_11 PAK_3534 PAK_03193 3H2T 3H2T_B 96.2 0.00013 2.3e-09 72.7 >3H2T_B Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVCpnf_12 PAK_3533 PAK_03192 1IBT 1IBT_E 28.4 34.0 0.00061 31.3 >1IBT_E HISTIDINE DECARBOXYLASE BETA CHAIN/HISTIDINE DECARBOXYLASE; HELIX DISORDER, LESS ACTIVE FORM; 2.6A {Lactobacillus sp.} SCOP: d.155.1.1
PVCpnf_13 PAK_3532 PAK_03191 2FKK 2FKK_A 96.9 8.1e-06 1.4e-10 71.8 >2FKK_A Baseplate structural protein Gp10; Bacteriophage T4 Baseplate ; HET: EDO; 1.2A {Enterobacteria phage T4}
PVCpnf_14 PAK_3531 PAK_03190 5JY5 5JY5_B 26.3 40.0 0.00071 23.5 >5JY5_B Thioredoxin; Thioredoxin 1 Cryptococcus neoformans X-ray; HET: SO4, GOL; 1.8A {Cryptococcus neoformans var. grubii serotype A}
PVCpnf_15 PAK_3530 PAK_03189 5E7P 5E7P_A 99.7 1.6e-22 2.9e-27 200.0 >5E7P_A Cell division control protein Cdc48; AAA ATPase, M. Smegmatic, RecA; HET: PGE, PG4, ADP, GOL; 2.507A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
PVCpnf_16 PAK_3529 PAK_03188 3T5S 3T5S_A 34.5 23 0.00041 26.1 >3T5S_A Macrophage migration inhibitory factor; SSGCID, Structural Genomics, Seattle Structural; 2.3A {Giardia lamblia}
PVCpnf_17 PAK_3527 PAK_03187 4WYQ 4WYQ_E 44.5 13 0.00023 18.2 >4WYQ_E Dicer (E.C.3.1.26.3), Trans-activation-responsive RNA-binding protein; RNA interference, microRNA, dsRBP, dsRBD; 3.2A {Homo sapiens}
PVCpnf_18 PAK_3526 PAK_03186 3SZP 3SZP_B 99.7 3.3e-21 5.9e-26 120.2 >3SZP_B Transcriptional regulator, LysR family; winged helix-turn helix, DNA-binding, transcription; 2.202A {Vibrio cholerae}
PVCpnf_19 PAK_3525 PAK_03185 4MIX 4MIX_A 99.9 8.7e-32 1.6e-36 228.1 >4MIX_A Putative insecticidal toxin (E.C.2.4.1.-); tyrosine glycosylation, UDP-GlcNAc, nucleotide-binding domain; HET: UD1; 1.8A {Photorhabdus asymbiotica subsp. asymbiotica}
PVCpnf_20 PAK_3524 PAK_03184 4QKX 4QKX_A 99.4 1.4e-16 2.4e-21 98.7 >4QKX_A Beta-2 adrenergic receptor (E.C.3.2.1.17), R9; 7-transmembrane helices, Signal transduction, G; HET: 35V; 3.3A {Homo sapiens}
PVCpnf_21 PAK_3523 PAK_03183 3HDF 3HDF_B 99.7 1.5e-21 2.7e-26 119.9 >3HDF_B Lysozyme (E.C.3.2.1.17); lysozyme-like, Antimicrobial, Bacteriolytic enzyme, Glycosidase; HET: NO3, GOL; 1.7A {Enterobacteria phage P21}
PVCpnf_22 PAK_3522 PAK_03182 5KKV 5KKV_A 62.7 4 7.2e-05 26.0 >5KKV_A GCN4-p2L; GCN4 coiled-coil, PROTEIN FIBRIL; 1.9A {N/A}
PVCpnf_23 PAK_3521 PAK_03181 1XJU 1XJU_B 100.0 1.9e-40 3.4e-45 228.5 >1XJU_B Lysozyme (E.C.3.2.1.17); secreted inactive conformation, HYDROLASE; HET: SO4; 1.07A {Enterobacteria phage P1} SCOP: d.2.1.3
PVCcif_1 PAK_1969 PAK_01787 5IV5 5IV5_D 99.6 1e-18 1.8e-23 119.6 >5IV5_DE Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCcif_2 PAK_1970 PAK_01788 3J9Q 3J9Q_D 99.9 4.6e-32 8.3e-37 231.0 >3J9Q_D sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCcif_3 PAK_1971 PAK_01789 3J9Q 3J9Q_D 99.9 9.7e-30 1.7e-34 224.5 >3J9Q_D sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCcif_4 PAK_1972 PAK_01790 3J9Q 3J9Q_D 99.9 7.6e-29 1.4e-33 213.5 >3J9Q_D sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCcif_5 PAK_1973 PAK_01791 5IV5 5IV5_D 98.9 6.1e-13 1.1e-17 91.4 >5IV5_DE Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCcif_6 PAK_1974 PAK_01792 3RJR 3RJR_C 45.6 12 0.00021 24.9 >3RJR_C Transforming growth factor beta-1; TGF beta, activation, integrin, Cytokine; HET: NAG; 3.05A {Sus scrofa}
PVCcif_7 PAK_1975 PAK_01793 5A3A 5A3A_A 66.2 3.1 5.6e-05 33.6 >5A3A_A SIR2 FAMILY PROTEIN (E.C.2.4.2.30); TRANSFERASE, P-RIBOSYLTRANSFERASE, METALLOPROTEIN, NAD-DEPENDENT, LIPOYLATION; HET: EDO, GLY; 1.54A {STREPTOCOCCUS PYOGENES}
PVCcif_8 PAK_1976 PAK_01794 2P5Z 2P5Z_X 99.9 3.4e-30 6.1e-35 231.6 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVCcif_9 PAK_1977 PAK_01795 2IA7 2IA7_A 99.6 1.7e-19 3.1e-24 120.3 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVCcif_10 PAK_1978 PAK_01796 5C2Y 5C2Y_A 35.5 22 0.00039 27.4 >5C2Y_A RNA polymerase II subunit B1; regulator of transcription, zinc finger; HET: SO4; 2.6A {Saccharomyces cerevisiae}
PVCcif_11 PAK_1979 PAK_01797 3H2T 3H2T_B 96.3 9.5e-05 1.7e-09 75.1 >3H2T_B Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVCcif_12 PAK_1980 PAK_01798 2LG1 2LG1_A 63.2 3.9 6.9e-05 34.2 >2LG1_A A-kinase anchor protein 13; METAL BINDING PROTEIN; NMR {Homo sapiens}
PVCcif_13 PAK_1981 PAK_01799 2FKK 2FKK_A 97.3 1.6e-06 2.8e-11 72.6 >2FKK_A Baseplate structural protein Gp10; Bacteriophage T4 Baseplate ; HET: EDO; 1.2A {Enterobacteria phage T4}
PVCcif_14 PAK_1982 PAK_01800 3Q1C 3Q1C_A 19.4 67.0 0.0012 34.2 >3Q1C_A LEE-encoded effector EspG; VirA fold, virulence factor, PAK; 1.596A {Escherichia coli O127:H6}
PVCcif_15 PAK_1983 PAK_01801 5MP9 5MP9_I 99.7 1e-20 1.9e-25 182.4 >5MP9_I Proteasome subunit alpha type-1 (E.C.3.4.25.1); Macromolecular complex, 26S proteasome, Protease; HET: ATP, ADP; 4.1A {Saccharomyces cerevisiae (strain ATCC 204508 / S288c)}
PVCcif_16 PAK_1984 PAK_01802 3FXD 3FXD_B 34.1 24.0 0.00043 28.1 >3FXD_B Protein IcmQ, Protein IcmR; 4 helix bundle, helix-turn-helix, UNKNOWN; 2.1A {Legionella pneumophila}
PVCcif_17 PAK_1985 PAK_01803 4FBJ 4FBJ_A 100.0 8.2e-93 1.5e-97 629.0 >4FBJ_A Hypothetical protein, NEDD8; Effector-Host target complex, Glutamine deamidase; 1.6A {Photorhabdus luminescens subsp. laumondii}
PVCcif_18 PAK_1986 PAK_01804 2I71 2I71_B 28.5 34 0.00061 31.7 >2I71_B Hypothetical protein; Structural Genomics, APC6294, Conserved hypothetical; 1.7A {Sulfolobus solfataricus} SCOP: e.72.1.1
PVCcif_19 PAK_1987 PAK_01805 1LTA 1LTA_A 97.5 3.5e-07 6.2e-12 71.9 >1LTA_A HEAT-LABILE ENTEROTOXIN (LT) COMPLEX WITH; ENTEROTOXIN; HET: GAL; 2.2A {Escherichia coli} SCOP: d.166.1.1
PVCcif_20 PAK_1988 PAK_01806 5NB9 5NB9_A 61.0 4.5 8.1e-05 32.3 >5NB9_A RNA chaperone ProQ; FinO, ProQ, RNA, chaperone; NMR {Escherichia coli O45:K1 (strain S88 / ExPEC)}
PVClumt_0 PAK_2217 PAK_02015 1HF2 1HF2_B 77.2 1.1 2e-05 40.1 >1HF2_B SEPTUM SITE-DETERMINING PROTEIN MINC; CELL DIVISION PROTEIN, FTSZ, SEPTUM; 2.2A {THERMOTOGA MARITIMA} SCOP: b.80.3.1, c.102.1.1
PVClumt_1 PAK_2216 PAK_02014 5IV5 5IV5_D 99.4 5.6e-17 1e-21 111.1 >5IV5_DE Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVClumt_2 PAK_2215 PAK_02013 3J9Q 3J9Q_D 99.6 1.1e-18 1.9e-23 149.7 >3J9Q_D sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVClumt_3 PAK_2214 PAK_02012 3J9Q 3J9Q_D 97.8 5.2e-08 9.2e-13 68.7 >3J9Q_D sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVClumt_4 PAK_2213 PAK_02011 3J9Q 3J9Q_D 99.9 2.7e-26 4.7e-31 197.2 >3J9Q_D sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVClumt_5 PAK_2212 PAK_02010 5IV5 5IV5_I 99.2 2e-14 3.5e-19 99.1 >5IV5_IA Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVClumt_6 PAK_2211 PAK_02009 1USD 1USD_A 70.9 2.1 3.8e-05 24.5 >1USD_A VASODILATOR-STIMULATED PHOSPHOPROTEIN; SIGNALING PROTEIN, PHOSPHORYLATION, ACTIN-BINDING, KINASE; 1.7A {HOMO SAPIENS} SCOP: h.1.29.1
PVClumt_7 PAK_2210 PAK_02008 3D1B 3D1B_B 28.2 35.0 0.00062 28.4 >3D1B_B RNA-induced transcriptional silencing complex protein; all alpha motif, RITS complex; 1.7A {Schizosaccharomyces pombe}
PVClumt_8 PAK_2209 PAK_02007 2P5Z 2P5Z_X 99.8 2.2e-23 4e-28 187.1 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVClumt_9 PAK_2208 PAK_02006 2IA7 2IA7_A 99.5 9.5e-18 1.7e-22 112.0 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVClumt_10 PAK_2207 PAK_02005 4DK6 4DK6_C 52.8 7.7 0.00014 24.6 >4DK6_C single domain antibody VHH, RNA-editing; KREPA1, VHH, Single domain antibody; 2.65A {Lama glama}
PVClumt_11 PAK_2206 PAK_02004 5CNZ 5CNZ_B 28.7 34 0.0006 20.1 >5CNZ_B MHC class I antigen, Beta-2-microglobulin; Fish MHC class I, Evolution; 1.74A {Ctenopharyngodon idella}
PVClumt_96 PAK_2205 PAK_02003 3H2T 3H2T_B 94.4 0.0047 8.5e-08 52.9 >3H2T_B Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVClumt_12 PAK_2204 PAK_02002 1FHO 1FHO_A 30.0 31 0.00055 27.4 >1FHO_A UNC-89; Pleckstrin Homology domain, electrostatics, muscle; NMR {Caenorhabditis elegans} SCOP: b.55.1.1
PVClumt_13 PAK_2203 PAK_02001 1V1H 1V1H_F 92.6 0.025 4.5e-07 42.9 >1V1H_F FIBRITIN, FIBER PROTEIN; ADENOVIRUS, CHIMERA, FIBER PROTEIN; 1.9A {HUMAN ADENOVIRUS TYPE 2, BACTERIOPHAGE T4} SCOP: h.1.17.1, b.83.1.1
PVClumt_97 PAK_2202 PAK_02000 5UP5 5UP5_A 42.5 14 0.00026 29.4 >5UP5_A EHEE_rd1_0284; de novo design, mini protein; NMR {Escherichia coli}
PVClumt_98 PAK_2201 PAK_01999 4AK2 4AK2_A 68.6 2.6 4.6e-05 39.1 >4AK2_A BT_4661; HEPARIN-BINDING PROTEIN, HEPARAN SULPHATE; HET: IDS, SGN; 1.35A {BACTEROIDES THETAIOTAOMICRON}
PVClumt_99 PAK_2200 PAK_01998 3K8P 3K8P_C 33.4 25.0 0.00044 34.3 >3K8P_C Dsl1, Protein transport protein SEC39; Intracellular trafficking, Dsl1 complex, multisubunit; 2.6A {Kluyveromyces lactis}
PVClumt_15 PAK_2199 PAK_01997 5E7P 5E7P_A 99.7 3.6e-22 6.3e-27 197.8 >5E7P_A Cell division control protein Cdc48; AAA ATPase, M. Smegmatic, RecA; HET: PGE, PG4, ADP, GOL; 2.507A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
PVClumt_16 PAK_2198 PAK_01996 1PDO 1PDO_A 56.8 6.0 0.00011 30.1 >1PDO_A MANNOSE PERMEASE; PHOSPHOENOLPYRUVATE DEPENDENT PHOSPHOTRANSFERASE SYSTEM, PHOSPHOTRANSFERASE; 1.7A {Escherichia coli} SCOP: c.54.1.1
PVClumt_17 PAK_2197 PAK_01995 1WRD 1WRD_A 44.0 13.0 0.00023 33.0 >1WRD_A Target of Myb protein 1/Ubiquitin; THREE-HELIX BUNDLE, UBIQUITIN-BINDING PROTEIN, PROTEIN; 1.75A {Bos taurus} SCOP: a.7.8.1
PVClumt_18 PAK_2195 PAK_01994 4MIX 4MIX_A 100.0 1.7e-38 3.1e-43 307.8 >4MIX_A Putative insecticidal toxin (E.C.2.4.1.-); tyrosine glycosylation, UDP-GlcNAc, nucleotide-binding domain; HET: UD1; 1.8A {Photorhabdus asymbiotica subsp. asymbiotica}
PVClopT_1 PAK_2092 PAK_01896 5IV5 5IV5_R 99.4 5.4e-17 9.7e-22 110.7 >5IV5_R Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVClopT_2 PAK_2091 PAK_01895 3J9Q 3J9Q_D 100.0 5.1e-34 9.1e-39 241.6 >3J9Q_D sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVClopT_4 PAK_2090 PAK_01894 3J9Q 3J9Q_D 99.9 6.8e-29 1.2e-33 213.3 >3J9Q_D sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVClopT_5 PAK_2089 PAK_01893 5IV5 5IV5_I 98.9 7.9e-13 1.4e-17 90.9 >5IV5_IA Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVClopT_6 PAK_2088 PAK_01892 4F6T 4F6T_B 49.6 9.4 0.00017 24.6 >4F6T_B Molybdenum storage protein subunit beta; molybdenum storage, ATP hydrolyzation, hexamer; HET: ATP, 8M0, 6M0; 1.6A {Azotobacter vinelandii}
PVClopT_7 PAK_2087 PAK_01891 5A3A 5A3A_A 63.1 3.9 7e-05 33.0 >5A3A_A SIR2 FAMILY PROTEIN (E.C.2.4.2.30); TRANSFERASE, P-RIBOSYLTRANSFERASE, METALLOPROTEIN, NAD-DEPENDENT, LIPOYLATION; HET: EDO, GLY; 1.54A {STREPTOCOCCUS PYOGENES}
PVClopT_8 PAK_2086 PAK_01890 2P5Z 2P5Z_X 99.9 2e-29 3.6e-34 226.7 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVClopT_9 PAK_2085 PAK_01889 2IA7 2IA7_A 99.6 3.4e-20 6.1e-25 121.3 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVClopT_10 PAK_2084 PAK_01888 3OJL 3OJL_A 65.0 3.4 6.1e-05 32.9 >3OJL_A Cap5O; Rossmann fold, binary complex, cofactor; HET: NAD; 2.8A {Staphylococcus aureus}
PVClopT_11 PAK_2083 PAK_01887 3H2T 3H2T_B 96.0 0.00024 4.3e-09 75.2 >3H2T_B Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVClopT_12 PAK_2082 PAK_01886 2FFM 2FFM_A 35.9 21 0.00038 31.3 >2FFM_A SAV1430; alpha-beta protein., Structural Genomics, PSI; 2.51A {Staphylococcus aureus subsp. aureus Mu50} SCOP: d.267.1.1
PVClopT_14 PAK_2081 PAK_01885 1Z8U 1Z8U_C 28.5 34.0 0.00061 30.2 >1Z8U_C Alpha-hemoglobin stabilizing protein, Hemoglobin alpha; alpha haemoglobin, AHSP, oxidation, interaction; HET: HEM; 2.4A {Homo sapiens} SCOP: a.7.11.1
PVClopT_15 PAK_2080 PAK_01884 5E7P 5E7P_A 99.7 5.4e-22 9.6e-27 196.1 >5E7P_A Cell division control protein Cdc48; AAA ATPase, M. Smegmatic, RecA; HET: PGE, PG4, ADP, GOL; 2.507A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
PVClopT_16 PAK_2079 PAK_01883 4X8K 4X8K_B 32.3 27 0.00048 28.0 >4X8K_B Sigma A Domain 2, RbpA; Transcription activator, Sigma factor; HET: SO4, EDO; 2.202A {Mycobacterium tuberculosis}
PVClopT_17 PAK_2078 PAK_01882 3WYG 3WYG_D 35.4 22 0.00039 23.6 >3WYG_D Gsp1p, Exportin-1, cAMP-dependent protein kinase; HEAT REPEAT, NUCLEAR EXPORT, GTP-BINDING; HET: GTP; 2.15A {Saccharomyces cerevisiae AWRI796}
PVClopT_18 PAK_2077 PAK_01881 1UKF 1UKF_A 99.8 1.9e-23 3.5e-28 175.0 >1UKF_A Avirulence protein AVRPPH3; AvrPphB, AvrPph3, Avirulence, Hypersensitive Response; 1.35A {Pseudomonas syringae pv. phaseolicola} SCOP: d.3.1.10
PVClopT_19 PAK_2075 PAK_01880 1T3C 1T3C_B 96.2 0.00013 2.4e-09 81.2 >1T3C_B neurotoxin type E (E.C.3.4.24.69); Clostridium botulinum, catalytic domain, E212Q; 1.9A {Clostridium botulinum} SCOP: d.92.1.7
PVCunit1_1 PAK_2876 PAK_02606 5IV5 5IV5_I 99.5 1.5e-17 2.6e-22 113.9 >5IV5_IA Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCunit1_2 PAK_2877 PAK_02607 3J9Q 3J9Q_D 100.0 1.8e-33 3.1e-38 239.1 >3J9Q_D sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit1_3 PAK_2878 PAK_02608 3J9Q 3J9Q_D 100.0 3.9e-34 6.9e-39 250.4 >3J9Q_D sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit1_4 PAK_2879 PAK_02609 3J9Q 3J9Q_D 99.9 3.6e-29 6.5e-34 215.6 >3J9Q_D sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit1_5 PAK_2880 PAK_02610 5IV5 5IV5_D 99.0 1.7e-13 3.1e-18 94.1 >5IV5_DE Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCunit1_6 PAK_2881 PAK_02611 1Y6Z 1Y6Z_B 45.6 12 0.00021 25.8 >1Y6Z_B heat shock protein, putative; heat shock, chaperone, Structural Genomics; 1.88A {Plasmodium falciparum}
PVCunit1_7 PAK_2882 PAK_02612 5A3A 5A3A_A 68.3 2.6 4.7e-05 34.0 >5A3A_A SIR2 FAMILY PROTEIN (E.C.2.4.2.30); TRANSFERASE, P-RIBOSYLTRANSFERASE, METALLOPROTEIN, NAD-DEPENDENT, LIPOYLATION; HET: EDO, GLY; 1.54A {STREPTOCOCCUS PYOGENES}
PVCunit1_8 PAK_2883 PAK_02613 2P5Z 2P5Z_X 99.9 1.4e-31 2.5e-36 240.6 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVCunit1_9 PAK_2884 PAK_02614 2IA7 2IA7_A 99.6 5.6e-19 1e-23 117.9 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVCunit1_10 PAK_2885 PAK_02615 1JW9 1JW9_B 52.0 8.1 0.00015 26.2 >1JW9_B MOLYBDOPTERIN BIOSYNTHESIS MOEB PROTEIN, MOLYBDOPTERIN; MoeB: modified Rossmann fold ; HET: SO4; 1.7A {Escherichia coli} SCOP: c.111.1.1
PVCunit1_11 PAK_2886 PAK_02616 3H2T 3H2T_B 96.4 6.4e-05 1.1e-09 76.5 >3H2T_B Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVCunit1_12 PAK_2887 PAK_02617 3N7C 3N7C_B 30.3 30 0.00054 29.9 >3N7C_B Crystal structure of the C-terminal; Nuclear pore complex, NUP2, Ran-binding; 2.26A {Ashbya gossypii}
PVCunit1_13 PAK_2888 PAK_02618 2FKK 2FKK_A 97.6 2.4e-07 4.4e-12 82.7 >2FKK_A Baseplate structural protein Gp10; Bacteriophage T4 Baseplate ; HET: EDO; 1.2A {Enterobacteria phage T4}
PVCunit1_14 PAK_2889 PAK_02619 4E2I 4E2I_3 30.8 29.0 0.00052 25.8 >4E2I_3 Large T antigen, DNA polymerase; replication initiation, Hydrolase-DNA binding complex; HET: ZN; 5.0A {Simian virus 40}
PVCunit1_15 PAK_2890 PAK_02620 5E7P 5E7P_A 99.8 1.1e-22 1.9e-27 201.2 >5E7P_A Cell division control protein Cdc48; AAA ATPase, M. Smegmatic, RecA; HET: PGE, PG4, ADP, GOL; 2.507A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
PVCunit1_16 PAK_2891 PAK_02621 3GGM 3GGM_A 49.2 9.6 0.00017 23.7 >3GGM_A uncharacterized protein BT9727_2919; Bacillus cereus group., Structural Genomics; 2.0A {Bacillus thuringiensis serovar konkukian}
PVCunit1_17 PAK_2892 PAK_02622 2I88 2I88_A 81.6 0.63 1.1e-05 40.9 >2I88_A Colicin-E1; protein-membrane interactions, toxin-membrane interactions, toxin; 2.5A {Escherichia coli}
PVCunit1_18 PAK_2893 PAK_02623 1T2K 1T2K_A 34.8 23 0.00041 28.4 >1T2K_A Interferon regulatory factor 3/Transcription factor; PROTEIN DNA COMPLEX, transcription, Transcription-DNA; 3.0A {Homo sapiens} SCOP: a.4.5.23
PVCunit1_19 PAK_2894 PAK_02624 2OE1 2OE1_B 67.8 2.7 4.9e-05 27.7 >2OE1_B Thioredoxin-3; electron transport, alpha/beta sandwich, reduced; HET: SO4; 2.1A {Saccharomyces cerevisiae}
PVCunit1_20 PAK_2895 PAK_02625 2FKK 2FKK_A 96.3 9.1e-05 1.6e-09 58.2 >2FKK_A Baseplate structural protein Gp10; Bacteriophage T4 Baseplate ; HET: EDO; 1.2A {Enterobacteria phage T4}
PVCunit1_21 PAK_2896 PAK_02626 1UQX 1UQX_A 100.0 6.8e-37 1.2e-41 244.4 >1UQX_A LECTIN; LECTIN, SUGAR-BINDING PROTEIN, ALPHA-METHYL-MANNOSIDE, SUGAR; HET: MMA; 1.7A {RALSTONIA SOLANACEARUM} SCOP: b.115.1.1
PVCcif_1 plu2531 PLT_02568 5IV5 5IV5_S 99.5 2.7e-18 4.9e-23 117.5 >5IV5_S Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCcif_2 plu2530 PLT_02567 3J9Q 3J9Q_D 99.9 1.6e-31 2.8e-36 227.6 >3J9Q_D sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCcif_3 plu2529 PLT_02566 3J9Q 3J9Q_D 100.0 2.7e-35 4.9e-40 258.0 >3J9Q_D sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCcif_4 plu2528 PLT_02565 3J9Q 3J9Q_D 99.9 1.5e-28 2.7e-33 211.6 >3J9Q_D sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCcif_5 plu2527 PLT_02564 5IV5 5IV5_F 99.0 2e-13 3.6e-18 93.8 >5IV5_FH Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCcif_6 plu2526 PLT_02563 1USE 1USE_A 70.0 2.3 4.1e-05 24.3 >1USE_A VASODILATOR-STIMULATED PHOSPHOPROTEIN; SIGNALING PROTEIN,, SIGNALING PROTEIN; 1.3A {HOMO SAPIENS} SCOP: h.1.29.1
PVCcif_7 plu2525 PLT_02562 4G9F 4G9F_D 29.1 33 0.00058 22.6 >4G9F_D HLA class I histocompatibility antigen; TCR, T cell, HLA B*2705; HET: SO4; 1.9A {Homo sapiens}
PVCcif_8 plu2524 PLT_02561 2P5Z 2P5Z_X 99.9 4.3e-29 7.6e-34 224.6 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVCcif_9 plu2523 PLT_02560 2IA7 2IA7_A 99.7 3.3e-21 5.8e-26 127.4 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVCcif_10 plu2522 PLT_02559 5IV5 5IV5_Z 61.0 4.5 8.1e-05 25.8 >5IV5_ZA Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCcif_11 plu2521 PLT_02558 3H2T 3H2T_B 96.3 8.7e-05 1.6e-09 75.6 >3H2T_B Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVCcif_12 plu2520 PLT_02557 4D0N 4D0N_B 71.5 2.0 3.6e-05 39.6 >4D0N_B TRANSFORMING PROTEIN RHOA (E.C.3.6.5.2), A-KINASE; CELL CYCLE, AKAP13, LBC, AKAP-LBC; HET: GDP, SO4; 2.1A {HOMO SAPIENS}
PVCcif_13 plu2519 PLT_02556 2FKK 2FKK_A 96.6 3.5e-05 6.2e-10 67.7 >2FKK_A Baseplate structural protein Gp10; Bacteriophage T4 Baseplate ; HET: EDO; 1.2A {Enterobacteria phage T4}
PVCcif_14 plu2518 PLT_02555 5J4U 5J4U_A 47.3 11 0.00019 31.0 >5J4U_A Glutathione transferase family protein; GST, Complex, GSH, TRANSFERASE; HET: GSH; 1.249A {Populus trichocarpa}
PVCcif_15 plu2517 PLT_02554 5E7P 5E7P_A 99.8 7.9e-23 1.4e-27 202.1 >5E7P_A Cell division control protein Cdc48; AAA ATPase, M. Smegmatic, RecA; HET: PGE, PG4, ADP, GOL; 2.507A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
PVCcif_16 plu2516 PLT_02553 3GGM 3GGM_A 32.5 26 0.00047 22.9 >3GGM_A uncharacterized protein BT9727_2919; Bacillus cereus group., Structural Genomics; 2.0A {Bacillus thuringiensis serovar konkukian}
PVCcif_17 plu2515 PLT_02552 4FBJ 4FBJ_A 100.0 1e-103 2e-108 700.8 >4FBJ_A Hypothetical protein, NEDD8; Effector-Host target complex, Glutamine deamidase; 1.6A {Photorhabdus luminescens subsp. laumondii}
PVCcif_18 plu2514 PLT_02551 1LBU 1LBU_A 36.7 20.0 0.00036 28.1 >1LBU_A MURAMOYL-PENTAPEPTIDE CARBOXYPEPTIDASE; HYDROLASE, NUCLEAR RECEPTOR, CARBOXYPEPTIDASE; 1.8A {Streptomyces albus} SCOP: d.65.1.1, a.20.1.1
PVClopT_1 plu2385 PLT_02424 5IV5 5IV5_R 99.4 3.5e-17 6.3e-22 112.0 >5IV5_R Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVClopT_2 plu2386 PLT_02425 3J9Q 3J9Q_D 99.9 9.1e-32 1.6e-36 228.6 >3J9Q_D sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVClopT_3 plu2387 PLT_02426 3J9Q 3J9Q_D 99.9 1.4e-32 2.5e-37 238.6 >3J9Q_D sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVClopT_4 plu2388 PLT_02427 3J9Q 3J9Q_D 99.9 8.1e-32 1.4e-36 231.1 >3J9Q_D sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVClopT_5 plu2389 PLT_02428 5IV5 5IV5_I 98.8 3.6e-12 6.5e-17 87.6 >5IV5_IA Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVClopT_6 plu2390 PLT_02429 1RH4 1RH4_A 49.4 9.5 0.00017 21.7 >1RH4_A RIGHT-HANDED COILED COIL TETRAMER; DE NOVO DESIGN; HET: IPA; 1.9A {synthetic construct} SCOP: k.17.1.1
PVClopT_7 plu2391 PLT_02430 5A3A 5A3A_A 64.3 3.6 6.4e-05 33.2 >5A3A_A SIR2 FAMILY PROTEIN (E.C.2.4.2.30); TRANSFERASE, P-RIBOSYLTRANSFERASE, METALLOPROTEIN, NAD-DEPENDENT, LIPOYLATION; HET: EDO, GLY; 1.54A {STREPTOCOCCUS PYOGENES}
PVClopT_8 plu2392 PLT_02431 2P5Z 2P5Z_X 99.9 3.3e-32 6e-37 244.6 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVClopT_9 plu2393 PLT_02432 2IA7 2IA7_A 99.7 1.2e-20 2.2e-25 124.9 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVClopT_10 plu2394 PLT_02433 4JIV 4JIV_D 57.1 5.9 0.00011 25.4 >4JIV_D Tail-associated lysozyme (E.C.3.2.1.17), Putative uncharacterized; PAAR-repeat motif, membrane piercing, type; HET: ELA, PLM, STE; 1.903A {Enterobacteria phage T4}
PVClopT_11 plu2395 PLT_02434 3H2T 3H2T_B 96.9 7.4e-06 1.3e-10 86.4 >3H2T_B Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVClopT_12 plu2396 PLT_02435 2JY7 2JY7_A 64.0 3.7 6.6e-05 34.8 >2JY7_A Ubiquitin-binding protein p62; ubiquitin binding, ubiquitin associated domain; NMR {Homo sapiens} SCOP: a.5.2.1
PVClopT_14 plu2397 PLT_02436 5MDX 5MDX_8 30.5 30.0 0.00053 31.3 >5MDX_8 Photosystem II protein D1 (E.C.1.10.3.9); photosynthesis, photosystem II supercomplex, single; HET: HEM, CLA, PHO, CHL;{Arabidopsis thaliana}
PVClopT_15 plu2398 PLT_02437 5E7P 5E7P_A 99.8 2.7e-23 4.7e-28 205.4 >5E7P_A Cell division control protein Cdc48; AAA ATPase, M. Smegmatic, RecA; HET: PGE, PG4, ADP, GOL; 2.507A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
PVClopT_16 plu2399 PLT_02438 4XHF 4XHF_B 29.6 32.0 0.00057 30.5 >4XHF_B NA(+)-TRANSLOCATING NADH-QUINONE REDUCTASE SUBUNIT C; FMN, OXIDOREDUCTASE, COVALENT FLAVINYLATION; HET: FMN; 1.76A {Shewanella oneidensis}
PVClopT_17 plu2400 PLT_02439 2EBF 2EBF_X 100.0 1.3e-88 2.4e-93 698.1 >2EBF_X Dermonecrotic toxin; Pasteurella multocida toxin, Trojan horse-like; HET: TRE; 1.9A {Pasteurella multocida} SCOP: d.3.1.17, c.150.1.2, a.296.1.1
PVClopT_18 plu2401 PLT_02440 1UKF 1UKF_A 99.8 6.6e-24 1.2e-28 177.7 >1UKF_A Avirulence protein AVRPPH3; AvrPphB, AvrPph3, Avirulence, Hypersensitive Response; 1.35A {Pseudomonas syringae pv. phaseolicola} SCOP: d.3.1.10
PVCunit1_1 plu1730 PLT_01758 5IV5 5IV5_F 99.4 1.8e-16 3.3e-21 108.5 >5IV5_FH Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCunit1_2 plu1729 PLT_01757 3J9Q 3J9Q_D 100.0 2.7e-34 4.8e-39 243.7 >3J9Q_D sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit1_3 plu1728 PLT_01756 3J9Q 3J9Q_D 100.0 1.8e-33 3.2e-38 246.4 >3J9Q_D sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit1_4 plu1727 PLT_01755 3J9Q 3J9Q_D 99.9 6.7e-30 1.2e-34 219.6 >3J9Q_D sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit1_5 plu1726 PLT_01754 5IV5 5IV5_R 99.1 7.2e-14 1.3e-18 96.0 >5IV5_R Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCunit1_6 plu1725 PLT_01753 1USD 1USD_A 46.6 11 0.0002 21.4 >1USD_A VASODILATOR-STIMULATED PHOSPHOPROTEIN; SIGNALING PROTEIN, PHOSPHORYLATION, ACTIN-BINDING, KINASE; 1.7A {HOMO SAPIENS} SCOP: h.1.29.1
PVCunit1_7 plu1724 PLT_01752 5A3B 5A3B_A 43.3 14 0.00024 30.0 >5A3B_A SIR2 FAMILY PROTEIN (E.C.2.4.2.30); TRANSFERASE, ADP-RIBOSYLTRANSFERASE, METALLOPROTEIN, NAD-DEPENDENT, LIPOYLATION; HET: GLY, APR; 1.9A {STREPTOCOCCUS PYOGENES}
PVCunit1_8 plu1723 PLT_01751 2P5Z 2P5Z_X 99.9 1.1e-30 2e-35 234.8 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVCunit1_9 plu1722 PLT_01750 5IV5 5IV5_D 99.3 2.8e-15 5.1e-20 106.8 >5IV5_DG Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCunit1_10 plu1721 PLT_01749 1I24 1I24_A 40.8 16 0.00028 27.5 >1I24_A SULFOLIPID BIOSYNTHESIS PROTEIN SQD1, NICOTINAMIDE-ADENINE-DINUCLEOTIDE; SDR, SHORT-CHAIN DEHYDROGENASE/REDUCTASE, ROSSMANN FOLD; HET: NAD, UPG, SO4; 1.2A {Arabidopsis thaliana} SCOP: c.2.1.2
PVCunit1_11 plu1720 PLT_01748 3H2T 3H2T_B 95.3 0.0011 2e-08 67.6 >3H2T_B Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVCunit1_12 plu1719 PLT_01747 2FFM 2FFM_A 56.2 6.3 0.00011 34.4 >2FFM_A SAV1430; alpha-beta protein., Structural Genomics, PSI; 2.51A {Staphylococcus aureus subsp. aureus Mu50} SCOP: d.267.1.1
PVCunit1_13 plu1718 PLT_01746 2FKK 2FKK_A 97.3 1.3e-06 2.4e-11 76.8 >2FKK_A Baseplate structural protein Gp10; Bacteriophage T4 Baseplate ; HET: EDO; 1.2A {Enterobacteria phage T4}
PVCunit1_14 plu1717 PLT_01745 2LXT 2LXT_C 12.6 130.0 0.0023 22.7 >2LXT_C CREB-binding protein (E.C.2.3.1.48), Histone-lysine N-methyltransferase; CREB binding protein, mixed-lineage leukemia; NMR {Homo sapiens}
PVCunit1_15 plu1716 PLT_01744 5E7P 5E7P_A 99.7 1.7e-21 3e-26 192.7 >5E7P_A Cell division control protein Cdc48; AAA ATPase, M. Smegmatic, RecA; HET: PGE, PG4, ADP, GOL; 2.507A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
PVCunit1_16 plu1715 PLT_01743 3GGM 3GGM_A 48.7 9.9 0.00018 24.9 >3GGM_A uncharacterized protein BT9727_2919; Bacillus cereus group., Structural Genomics; 2.0A {Bacillus thuringiensis serovar konkukian}
PVCunit1_17 plu1714 PLT_01742 1EB6 1EB6_A 83.9 0.43 7.7e-06 31.5 >1EB6_A NEUTRAL PROTEASE II (E.C.3.4.24.39); METALLOPROTEINASE, NEUTRAL PROTEASE II, HYDROLASE; HET: EDO; 1.0A {ASPERGILLUS ORYZAE} SCOP: d.92.1.12
PVCunit1_18 plu1713 PLT_01741 3IM4 3IM4_C 41.0 16.0 0.00028 26.3 >3IM4_C cAMP-dependent protein kinase type I-alpha; four-helix bundle, cAMP, cAMP-binding, Disulfide; 2.285A {Bos taurus}
PVCunit1_19 plu1712 PLT_01740 2COL 2COL_A 96.9 1e-05 1.8e-10 76.0 >2COL_A Bifunctional hemolysin-adenylate cyclase (E.C.4.6.1.1); LYASE, Calcium binding, LYASE-METAL BINDING; 2.2A {Bordetella pertussis}
PVCunit2_1 plu1708 PLT_01736 5IV5 5IV5_B 99.4 3.5e-17 6.2e-22 112.1 >5IV5_BC Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCunit2_2 plu1707 PLT_01735 3J9Q 3J9Q_D 99.9 9.6e-33 1.7e-37 234.5 >3J9Q_D sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit2_3 plu1706 PLT_01734 3J9Q 3J9Q_D 100.0 1.2e-33 2.1e-38 249.3 >3J9Q_D sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit2_4 plu1705 PLT_01733 3J9Q 3J9Q_D 99.9 3e-29 5.4e-34 216.1 >3J9Q_D sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit2_5 plu1704 PLT_01732 5IV5 5IV5_R 98.9 1e-12 1.9e-17 90.3 >5IV5_R Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCunit2_6 plu1703 PLT_01731 4E71 4E71_A 46.2 12 0.00021 23.4 >4E71_A Plexin-B2; plexin, transmembrane, signaling, rbd, Structural; 2.26A {Homo sapiens}
PVCunit2_7 plu1702 PLT_01730 5A3B 5A3B_A 66.3 3.1 5.5e-05 33.6 >5A3B_A SIR2 FAMILY PROTEIN (E.C.2.4.2.30); TRANSFERASE, ADP-RIBOSYLTRANSFERASE, METALLOPROTEIN, NAD-DEPENDENT, LIPOYLATION; HET: GLY, APR; 1.9A {STREPTOCOCCUS PYOGENES}
PVCunit2_8 plu1701 PLT_01729 2P5Z 2P5Z_X 99.9 4.7e-31 8.3e-36 237.2 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVCunit2_9 plu1700 PLT_01728 2IA7 2IA7_A 99.6 3.4e-19 6.1e-24 120.5 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVCunit2_10 plu1699 PLT_01727 5C2Y 5C2Y_A 34.4 23 0.00042 27.3 >5C2Y_A RNA polymerase II subunit B1; regulator of transcription, zinc finger; HET: SO4; 2.6A {Saccharomyces cerevisiae}
PVCunit2_11 plu1698 PLT_01726 3H2T 3H2T_B 96.2 0.00013 2.3e-09 74.3 >3H2T_B Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVCunit2_12 plu1697 PLT_01725 2RIL 2RIL_A 24.5 45.0 0.00081 25.2 >2RIL_A Antibiotic biosynthesis monooxygenase; YP_001095275.1, Putative monooxygenase, Antibiotic biosynthesis; 1.26A {Shewanella loihica}
PVCunit2_13 plu1696 PLT_01724 1V1H 1V1H_E 95.2 0.0015 2.7e-08 52.2 >1V1H_E FIBRITIN, FIBER PROTEIN; ADENOVIRUS, CHIMERA, FIBER PROTEIN; 1.9A {HUMAN ADENOVIRUS TYPE 2, BACTERIOPHAGE T4} SCOP: h.1.17.1, b.83.1.1
PVCunit2_14 plu1695 PLT_01723 3K9K 3K9K_A 99.7 2.6e-22 4.7e-27 146.1 >3K9K_A Histone-lysine N-methyltransferase SETMAR (E.C.2.1.1.43); transposase, Chromatin regulator, DNA damage; 2.55A {Homo sapiens}
PVCunit2_15 plu1694 PLT_01722 1GYZ 1GYZ_A 18.2 74.0 0.0013 24.4 >1GYZ_A 50S RIBOSOMAL PROTEIN L20; RIBOSOMAL PROTEIN, RIBOSOME, PROTEIN SYNTHESIS; NMR {AQUIFEX AEOLICUS} SCOP: a.144.2.1
PVCunit2_16 plu1693 PLT_01721 5L4G 5L4G_M 99.7 2.1e-21 3.8e-26 188.0 >5L4G_M Proteasome subunit alpha type-6 (E.C.3.4.25.1); proteostasis, AAA-ATPase, Hydrolase; HET: ADP, ATP; 4.019A {Homo sapiens}
PVCunit2_17 plu1692 PLT_01720 3GGM 3GGM_A 76.6 1.2 2.1e-05 29.3 >3GGM_A uncharacterized protein BT9727_2919; Bacillus cereus group., Structural Genomics; 2.0A {Bacillus thuringiensis serovar konkukian}
PVCunit2_18 plu1691 PLT_01719 2GUT 2GUT_A 48.5 10 0.00018 28.7 >2GUT_A Positive cofactor 2 glutamine/Q-rich-associated protein; KIX, 3 HELICAL BUNDLE, TRANSCRIPTION; NMR {Homo sapiens}
PVCunit2_19 plu1690 PLT_01718 3ONQ 3ONQ_B 55.9 6.4 0.00011 22.6 >3ONQ_B Regulator of polyketide synthase expression; Structural Genomics, PSI-2, Protein Structure; HET: SO4, GOL; 2.098A {Bifidobacterium adolescentis}
PVCunit2_20 plu1689 PLT_01717 5MBV 5MBV_A 36.3 21 0.00037 30.0 >5MBV_A RecBCD enzyme subunit RecB (E.C.3.1.11.5); Inhibitor, Complex, DNA repair, Helicase/Nuclease;{Escherichia coli}
PVCunit3_1 plu1689 PLT_01716 5IV5 5IV5_I 99.4 2.9e-16 5.2e-21 107.5 >5IV5_IB Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCunit3_2 plu1688 PLT_01715 3J9Q 3J9Q_D 100.0 1.8e-33 3.2e-38 239.2 >3J9Q_D sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit3_3 plu1687 PLT_01714 3J9Q 3J9Q_D 100.0 2e-33 3.6e-38 245.9 >3J9Q_D sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit3_4 plu1686 PLT_01713 3J9Q 3J9Q_D 99.9 1e-29 1.8e-34 218.4 >3J9Q_D sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit3_5 plu1685 PLT_01712 5IV5 5IV5_I 98.8 3e-12 5.3e-17 88.0 >5IV5_IB Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCunit3_6 plu1684 PLT_01711 2E3N 2E3N_A 77.2 1.1 2e-05 26.9 >2E3N_A Lipid-transfer protein CERT; LIPID TRANSFER PROTEIN, CERT, CERAMIDE; HET: 6CM; 1.4A {Homo sapiens}
PVCunit3_7 plu1683 PLT_01710 1FLT 1FLT_Y 32.8 26 0.00046 23.6 >1FLT_Y VASCULAR ENDOTHELIAL GROWTH FACTOR, FMS-LIKE; COMPLEX (GROWTH FACTOR-TRANSFERASE), FLT-1 RECEPTOR; 1.7A {Homo sapiens} SCOP: b.1.1.4
PVCunit3_8 plu1682 PLT_01709 2P5Z 2P5Z_X 99.9 7.6e-32 1.4e-36 242.2 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVCunit3_9 plu1681 PLT_01708 2IA7 2IA7_A 99.5 1.3e-18 2.3e-23 116.2 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVCunit3_10 plu1680 PLT_01707 4IX9 4IX9_A 39.7 17 0.0003 24.8 >4IX9_A V-type proton ATPase subunit F; V-ATPase, stalk subunit, subunit F; HET: TRS, GOL; 2.33A {Saccharomyces cerevisiae}
PVCunit3_11 plu1679 PLT_01706 3H2T 3H2T_B 95.8 0.00039 7e-09 70.9 >3H2T_B Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVCunit3_12 plu1678 PLT_01705 3TPZ 3TPZ_B 27.1 37 0.00067 31.0 >3TPZ_B Ribosomal RNA small subunit methyltransferase; rRNA adenine dimethyltransferase, ribogenesis, TRANSFERASE; 2.1A {Escherichia coli}
PVCunit3_13 plu1677 PLT_01704 2FKK 2FKK_A 96.7 2.5e-05 4.4e-10 67.0 >2FKK_A Baseplate structural protein Gp10; Bacteriophage T4 Baseplate ; HET: EDO; 1.2A {Enterobacteria phage T4}
PVCunit3_14 plu1676 PLT_01703 5US5 5US5_B 18.3 73.0 0.0013 27.8 >5US5_B UPF0297 protein EF_1202; IreB, dimer, Structural Genomics, PSI-2; NMR {Enterococcus faecalis (strain ATCC 700802 / V583)}
PVCunit3_15 plu1675 PLT_01702 5E7P 5E7P_A 99.8 9.6e-23 1.7e-27 201.5 >5E7P_A Cell division control protein Cdc48; AAA ATPase, M. Smegmatic, RecA; HET: PGE, PG4, ADP, GOL; 2.507A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
PVCunit3_16 plu1674 PLT_01701 2OPA 2OPA_A 49.4 9.5 0.00017 22.5 >2OPA_A Probable tautomerase ywhB (E.C.5.3.2.-); homohexamer, 4-Oxalocrotonate Tautomerase, inhibitor, 2-Fluoro-p-Hydroxycinnamate; HET: FHC; 2.4A {Bacillus subtilis}
PVCunit3_17 plu1673 PLT_01700 3JBO 3JBO_A 50.0 9.2 0.00016 26.0 >3JBO_A9 PROTEIN/RNA Complex; RIBOSOME; 5.8A {Plasmodium falciparum 3D7}
PVCunit3_18 plu1672 PLT_01699 4Q2G 4Q2G_B 27.6 36.0 0.00065 30.4 >4Q2G_B Phosphatidate cytidylyltransferase (E.C.2.7.7.41); intramembrane enzyme, CdsA fold, phospholipid; HET: BNG; 3.4A {Thermotoga maritima MSB8}
PVCunit3_19 plu1671 PLT_01698 2W8M 2W8M_B 24.2 46 0.00082 31.1 >2W8M_B ORF D212; SSV1, CRENARCHAEAL VIRUS, HYDROLASE; 2.4A {SULFOLOBUS VIRUS RAGGED HILLS}
PVCunit4_1 plu1667 PLT_01696 5IV5 5IV5_B 99.4 2.8e-17 5e-22 112.6 >5IV5_BC Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCunit4_2 plu1666 PLT_01695 3J9Q 3J9Q_D 99.9 3.8e-33 6.8e-38 237.2 >3J9Q_D sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit4_3 plu1665 PLT_01694 3J9Q 3J9Q_D 100.0 1.5e-34 2.7e-39 254.0 >3J9Q_D sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit4_4 plu1664 PLT_01693 3J9Q 3J9Q_D 99.9 2e-29 3.5e-34 217.9 >3J9Q_D sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit4_5 plu1663 PLT_01692 5IV5 5IV5_F 98.9 5.5e-13 9.9e-18 91.6 >5IV5_FH Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCunit4_6 plu1662 PLT_01691 1CZ0 1CZ0_B 61.8 4.3 7.7e-05 26.8 >1CZ0_B INTRON-ENCODED HOMING ENDONUCLEASE I-PPOI (E.C.3.1.-.-)/DNA; PROTEIN-DNA COMPLEX, DISTORTED DNA, HIS-CYS; 2.1A {Physarum polycephalum} SCOP: d.4.1.3
PVCunit4_7 plu1661 PLT_01690 5A3B 5A3B_A 63.6 3.8 6.8e-05 33.1 >5A3B_A SIR2 FAMILY PROTEIN (E.C.2.4.2.30); TRANSFERASE, ADP-RIBOSYLTRANSFERASE, METALLOPROTEIN, NAD-DEPENDENT, LIPOYLATION; HET: GLY, APR; 1.9A {STREPTOCOCCUS PYOGENES}
PVCunit4_8 plu1660 PLT_01689 2P5Z 2P5Z_X 99.9 1.3e-32 2.4e-37 247.1 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVCunit4_9 plu1659 PLT_01688 2IA7 2IA7_A 99.6 4.6e-19 8.2e-24 119.9 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVCunit4_10 plu1658 PLT_01687 5C2Y 5C2Y_A 32.0 27 0.00049 26.9 >5C2Y_A RNA polymerase II subunit B1; regulator of transcription, zinc finger; HET: SO4; 2.6A {Saccharomyces cerevisiae}
PVCunit4_11 plu1657 PLT_01686 3H2T 3H2T_B 96.0 0.00025 4.6e-09 72.2 >3H2T_B Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVCunit4_12 plu1656 PLT_01685 4H3K 4H3K_B 28.9 33.0 0.00059 36.0 >4H3K_B Symplekin, RNA polymerase II subunit; Heat repeat, phosphatase, RNA polymerase; 2.0A {Homo sapiens}
PVCunit4_13 plu1655 PLT_01684 2FKK 2FKK_A 97.1 2.7e-06 4.9e-11 74.3 >2FKK_A Baseplate structural protein Gp10; Bacteriophage T4 Baseplate ; HET: EDO; 1.2A {Enterobacteria phage T4}
PVCunit4_14 plu1654 PLT_01683 2BPT 2BPT_B 15.6 93.0 0.0017 24.5 >2BPT_B IMPORTIN BETA-1 SUBUNIT, NUCLEOPORIN NUP1; NUCLEAR TRANSPORT, NUCLEOCYTOPLASMIC TRANSPORT, NUCLEAR; 1.99A {SACCHAROMYCES CEREVISIAE}
PVCunit4_15 plu1653 PLT_01682 5E7P 5E7P_A 99.7 8.2e-22 1.5e-26 195.1 >5E7P_A Cell division control protein Cdc48; AAA ATPase, M. Smegmatic, RecA; HET: PGE, PG4, ADP, GOL; 2.507A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
PVCunit4_16 plu1652 PLT_01681 3FM2 3FM2_A 41.1 16 0.00028 28.0 >3FM2_A Uncharacterized protein, distantly related to; STRUCTURAL GENOMICS, JOINT CENTER FOR; HET: ACT; 1.8A {Anabaena variabilis ATCC 29413}
PVCunit4_17 plu1651 PLT_01680 2I88 2I88_A 56.2 6.2 0.00011 35.4 >2I88_A Colicin-E1; protein-membrane interactions, toxin-membrane interactions, toxin; 2.5A {Escherichia coli}
PVCpnf_1 PAU_03353 PAU_03392 5IV5 5IV5_F 99.4 1.6e-16 2.8e-21 108.8 >5IV5_FI Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCpnf_2 PAU_03352 PAU_03391 3J9Q 3J9Q_C 100.0 3.4e-34 6e-39 243.2 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCpnf_3 PAU_03351 PAU_03390 3J9Q 3J9Q_C 99.9 8.6e-32 1.5e-36 234.4 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCpnf_4 PAU_03350 PAU_03389 3J9Q 3J9Q_C 99.9 9e-28 1.6e-32 207.6 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCpnf_5 PAU_03349 PAU_03388 5IV5 5IV5_D 99.0 2.3e-13 4e-18 93.6 >5IV5_DF Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCpnf_6 PAU_03348 PAU_03387 3SLS 3SLS_B 75.1 1.4 2.5e-05 26.7 >3SLS_B Dual specificity mitogen-activated protein kinase; Serine-threonine kinase, Signalling, TRANSFERASE-TRANSFERASE INHIBITOR; HET: 77D, ANP; 2.3A {Homo sapiens}
PVCpnf_7 PAU_03347 PAU_03386 3KXY 3KXY_X 43.4 14.0 0.00024 28.1 >3KXY_X Exoenzyme S synthesis protein C; type-three secretion system, TTSS, T3SS; 2.804A {Pseudomonas aeruginosa}
PVCpnf_8 PAU_03346 PAU_03385 2P5Z 2P5Z_X 99.9 3.2e-28 5.7e-33 219.2 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVCpnf_9 PAU_03345 PAU_03384 2IA7 2IA7_A 99.5 3.4e-18 6e-23 113.3 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVCpnf_10 PAU_03344 PAU_03383 1WEY 1WEY_A 71.0 2.1 3.7e-05 26.9 >1WEY_A calcipressin 1; structural genomics, RRM domain, calcipressin; NMR {Mus musculus} SCOP: d.58.7.1
PVCpnf_11 PAU_03343 PAU_03382 5IV5 5IV5_E 96.4 7.3e-05 1.3e-09 79.3 >5IV5_EA Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCpnf_12 PAU_03342 PAU_03381 5CER 5CER_G 30.8 30 0.00052 35.6 >5CER_G Bd0816 (E.C.3.4.16.4), Bd3460; transpeptidase and ankyrin repeat, immune; 2.48A {Bdellovibrio bacteriovorus HD100}
PVCpnf_13 PAU_03341 PAU_03380 1PDI 1PDI_N 93.7 0.011 2e-07 55.7 >1PDI_N Short tail fiber protein; STRUCTURAL PROTEIN; 12.0A {Enterobacteria phage T4} SCOP: i.19.1.1
PVCpnf_14 PAU_03340 PAU_03379 3C9P 3C9P_A 28.5 35.0 0.00061 31.5 >3C9P_A Uncharacterized protein SP1917; Streptococcus pneumoniae, SP_1917, Structural Genomics; 1.96A {Streptococcus pneumoniae}
PVCpnf_15 PAU_03339 PAU_03378 5E7P 5E7P_A 99.7 5.9e-22 1e-26 196.1 >5E7P_A Cell division control protein Cdc48; AAA ATPase, M. Smegmatic, RecA; HET: PGE, GOL, ADP, PG4; 2.507A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
PVCpnf_16 PAU_03338 PAU_03377 3UV1 3UV1_A 22.7 52 0.00092 25.1 >3UV1_A Der f 7 allergen; Super-roll, ALLERGEN; HET: MSE; 2.0A {Dermatophagoides farinae}
PVCpnf_17 PAU_03337 PAU_03376 2COL 2COL_A 96.8 1.5e-05 2.6e-10 74.8 >2COL_A Bifunctional hemolysin-adenylate cyclase (E.C.4.6.1.1); LYASE, Calcium binding, LYASE-METAL BINDING; 2.2A {Bordetella pertussis}
PVCpnf_18 PAU_03336 PAU_03375 4TNO 4TNO_A 69.5 2.4 4.2e-05 24.4 >4TNO_A HYPOTHETICAL PROTEIN PF1117; SULFUR SAD, hydrolase; 2.14A {Pyrococcus furiosus}
PVCpnf_19 PAU_03334 PAU_03374 3L3U 3L3U_A 70.4 2.2 3.9e-05 22.6 >3L3U_A POL polyprotein; DNA INTEGRATION, AIDS, INTEGRASE, ENDONUCLEASE; HET: SO4; 1.4A {Human immunodeficiency virus 1}
PVCpnf_20 PAU_03333 PAU_03373 3FXQ 3FXQ_B 99.7 5.5e-21 9.7e-26 122.1 >3FXQ_B LysR type regulator of tsaMBCD; LysR-type, transcriptional regulator, LTTR, TsaR; 1.85A {Comamonas testosteroni}
PVCpnf_21 PAU_03332 PAU_03372 1HQ0 1HQ0_A 100.0 2.4e-54 4.1e-59 390.4 >1HQ0_A CYTOTOXIC NECROTIZING FACTOR 1; BETA SANDWICH, RHO DEAMIDASE, RHO; HET: PO4; 1.83A {Escherichia coli} SCOP: d.194.1.1
PVCpnf_22 PAU_03331 PAU_03371 1JEO 1JEO_A 57.2 6.0 0.0001 23.6 >1JEO_A HYPOTHETICAL PROTEIN MJ1247; RuMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase; HET: CIT; 2.0A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
PVCpnf_23 PAU_03330 PAU_03370 1XJU 1XJU_A 100.0 4.1e-40 7.2e-45 226.9 >1XJU_A Lysozyme (E.C.3.2.1.17); secreted inactive conformation, HYDROLASE; HET: SO4; 1.07A {Enterobacteria phage P1} SCOP: d.2.1.3
PVCpnf_24 PAU_03329 PAU_03369 3VP9 3VP9_A 52.5 8.1 0.00014 29.8 >3VP9_A General transcriptional corepressor TUP1; Four helix bundle, TRANSCRIPTION; HET: DIO; 1.799A {Saccharomyces cerevisiae}
PVCcif_1 PAU_01993 PAU_01961 5W5F 5W5F_M 99.6 7.6e-19 1.3e-23 120.3 >5W5F_M Tail tube protein gp19; T4 tail tube, dose limit;{Enterobacteria phage T4 sensu lato}
PVCcif_2 PAU_01994 PAU_01962 3J9Q 3J9Q_C 99.9 3.1e-31 5.4e-36 225.9 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCcif_3 PAU_01995 PAU_01963 3J9Q 3J9Q_C 99.9 3.6e-28 6.4e-33 214.6 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCcif_4 PAU_01996 PAU_01964 3J9Q 3J9Q_C 99.9 9.7e-29 1.7e-33 212.9 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCcif_5 PAU_01997 PAU_01965 5IV5 5IV5_F 99.0 3.7e-13 6.4e-18 92.6 >5IV5_FH Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCcif_6 PAU_01998 PAU_01966 1IV8 1IV8_A 42.6 15 0.00026 29.0 >1IV8_A MALTOOLIGOSYL TREHALOSE SYNTHASE(E.C.5.4.99.15); TREHALOSE SYNTHASE, BETA ALPHA BARREL; 1.9A {Sulfolobus acidocaldarius} SCOP: b.71.1.1, c.1.8.1
PVCcif_7 PAU_01999 PAU_01967 5A3A 5A3A_A 62.8 4.1 7.1e-05 33.0 >5A3A_A SIR2 FAMILY PROTEIN (E.C.2.4.2.30); TRANSFERASE, P-RIBOSYLTRANSFERASE, METALLOPROTEIN, NAD-DEPENDENT, LIPOYLATION; HET: EDO, GLY; 1.54A {STREPTOCOCCUS PYOGENES}
PVCcif_8 PAU_02000 PAU_01968 2P5Z 2P5Z_X 99.9 3.4e-29 5.9e-34 225.3 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVCcif_9 PAU_02001 PAU_01969 2IA7 2IA7_A 99.6 5.8e-20 1e-24 122.6 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVCcif_10 PAU_02002 PAU_01970 1JW9 1JW9_B 40.6 16 0.00029 24.8 >1JW9_B MOLYBDOPTERIN BIOSYNTHESIS MOEB PROTEIN, MOLYBDOPTERIN; MoeB: modified Rossmann fold ; HET: SO4; 1.7A {Escherichia coli} SCOP: c.111.1.1
PVCcif_11 PAU_02003 PAU_01971 3H2T 3H2T_A 96.3 0.00011 1.9e-09 74.9 >3H2T_A Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVCcif_12 PAU_02004 PAU_01972 4ORL 4ORL_A 57.3 5.9 0.0001 36.3 >4ORL_A Uncharacterized protein; PF16022 family, DUF4783, Structural Genomics; 1.4A {Bacteroides ovatus}
PVCcif_13 PAU_02005 PAU_01973 2FKK 2FKK_A 97.0 5e-06 8.7e-11 69.7 >2FKK_A Baseplate structural protein Gp10; Bacteriophage T4 Baseplate ; HET: EDO; 1.2A {Enterobacteria phage T4}
PVCcif_14 PAU_02006 PAU_01974 3KDE 3KDE_C 17.7 79.0 0.0014 23.2 >3KDE_C PROTEIN/DNA Complex; THAP domain, DNA-binding domain, zinc-finger; 1.74A {Drosophila melanogaster}
PVCcif_15 PAU_02007 PAU_01975 5E7P 5E7P_A 99.7 3.2e-22 5.6e-27 197.7 >5E7P_A Cell division control protein Cdc48; AAA ATPase, M. Smegmatic, RecA; HET: PGE, GOL, ADP, PG4; 2.507A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
PVCcif_16 PAU_02008 PAU_01976 4V9F 4V9F_6 51.5 8.5 0.00015 27.2 >4V9F_6 PROTEIN/RNA Complex; 50S ribosomal subunit, ribonucleoprotein, ribosomal; HET: CL, 1MA, NA, OMG, OMU, MG, PSU, UR3, ACY; 2.404A {Haloarcula marismortui}
PVCcif_17 PAU_02009 PAU_01977 4FBJ 4FBJ_A 100.0 2e-98 3e-103 664.7 >4FBJ_A Hypothetical protein, NEDD8; Effector-Host target complex, Glutamine deamidase; 1.6A {Photorhabdus luminescens subsp. laumondii}
PVCcif_18 PAU_02010 PAU_01978 1IRG 1IRG_A 35.8 22 0.00038 28.6 >1IRG_A INTERFERON REGULATORY FACTOR-2; TRANSCRIPTION REGULATION, WINGED HELIX-TURN-HELIX; NMR {Mus musculus} SCOP: a.4.5.23
PVCcif_19 PAU_02011 PAU_01979 4JXJ 4JXJ_A 43.6 14 0.00024 30.9 >4JXJ_A Ribosomal RNA small subunit methyltransferase; Structural Genomics, NIAID, National Institute; HET: IOD; 2.0A {Rickettsia bellii}
PVCcif_20 PAU_02012 PAU_01980 3IKM 3IKM_A 30.2 31 0.00054 33.8 >3IKM_A DNA polymerase subunit gamma-1 (E.C.2.7.7.7); Human mitochondrial DNA polymerase, Disease; 3.24A {Homo sapiens}
PVClumt_0 PAU_02249 PAU_02208 6EKT 6EKT_A 99.7 6.2e-21 1.1e-25 179.4 >6EKT_A p-47 protein; lipid binding, LIPID BINDING PROTEIN; 1.75A {Clostridium botulinum (strain Kyoto / Type A2)}
PVClumt_1 PAU_02247 PAU_02206 5IV5 5IV5_B 99.4 6.2e-17 1.1e-21 110.9 >5IV5_BC Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVClumt_2 PAU_02246 PAU_02205 3J9Q 3J9Q_C 99.9 5.2e-29 9.1e-34 218.0 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVClumt_4 PAU_02245 PAU_02204 3J9Q 3J9Q_C 99.8 9e-26 1.6e-30 194.0 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVClumt_5 PAU_02244 PAU_02203 5IV5 5IV5_B 99.1 1e-13 1.8e-18 95.7 >5IV5_BB Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVClumt_6 PAU_02243 PAU_02202 1USD 1USD_A 70.0 2.3 4.1e-05 24.3 >1USD_A VASODILATOR-STIMULATED PHOSPHOPROTEIN; SIGNALING PROTEIN, PHOSPHORYLATION, ACTIN-BINDING, KINASE; 1.7A {HOMO SAPIENS} SCOP: h.1.29.1
PVClumt_7 PAU_02242 PAU_02201 3D1B 3D1B_A 28.0 36.0 0.00063 28.4 >3D1B_A RNA-induced transcriptional silencing complex protein; all alpha motif, RITS complex; 1.7A {Schizosaccharomyces pombe}
PVClumt_8 PAU_02241 PAU_02200 2P5Z 2P5Z_X 99.8 1.6e-23 2.8e-28 188.1 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVClumt_9 PAU_02240 PAU_02199 2IA7 2IA7_A 99.5 6.8e-18 1.2e-22 112.8 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVClumt_10 afp10 PAU_02198 4JIW 4JIW_L 68.9 2.6 4.5e-05 26.9 >4JIW_L Tail-associated lysozyme (E.C.3.2.1.17), Putative uncharacterized; PAAR-repeat motif, membrane piercing, type; 3.402A {Enterobacteria phage T4}
PVClumt_11 afp11 PAU_02197 3H2T 3H2T_A 95.8 0.0004 7.1e-09 68.0 >3H2T_A Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVClumt_12 PAU_02237 PAU_02196 1FHO 1FHO_A 28.4 35 0.00061 27.2 >1FHO_A UNC-89; Pleckstrin Homology domain, electrostatics, muscle; NMR {Caenorhabditis elegans} SCOP: b.55.1.1
PVClumt_13 PAU_02236 PAU_02195 1V1H 1V1H_F 96.0 0.00028 4.9e-09 53.9 >1V1H_F FIBRITIN, FIBER PROTEIN; ADENOVIRUS, CHIMERA, FIBER PROTEIN; 1.9A {HUMAN ADENOVIRUS TYPE 2, BACTERIOPHAGE T4} SCOP: b.83.1.1, h.1.17.1
PVClumt_97 PAU_02235 PAU_02194 6EKT 6EKT_A 99.2 3.1e-15 5.5e-20 147.3 >6EKT_A p-47 protein; lipid binding, LIPID BINDING PROTEIN; 1.75A {Clostridium botulinum (strain Kyoto / Type A2)}
PVClumt_98 PAU_02234 PAU_02193 4AK2 4AK2_A 68.5 2.6 4.6e-05 39.1 >4AK2_A BT_4661; HEPARIN-BINDING PROTEIN, HEPARAN SULPHATE; HET: SGN, IDS; 1.35A {BACTEROIDES THETAIOTAOMICRON}
PVClumt_99 PAU_02233 PAU_02192 4PAC 4PAC_A 17.2 83.0 0.0014 26.6 >4PAC_A histidine phosphotransfer protein 2 from; cytokinin signaling, helical fold, signaling; HET: MES; 2.53A {Arabidopsis thaliana}
PVClumt_15 PAU_02232 PAU_02191 5E7P 5E7P_B 99.7 1.1e-21 1.9e-26 194.4 >5E7P_B Cell division control protein Cdc48; AAA ATPase, M. Smegmatic, RecA; HET: PG4, PGE, GOL, ADP; 2.507A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
PVClumt_16 PAU_02231 PAU_02190 1PDO 1PDO_A 57.1 6.0 0.0001 30.2 >1PDO_A MANNOSE PERMEASE; PHOSPHOENOLPYRUVATE DEPENDENT PHOSPHOTRANSFERASE SYSTEM, PHOSPHOTRANSFERASE; 1.7A {Escherichia coli} SCOP: c.54.1.1
PVClumt_17 PAU_02230 PAU_02189 4MIX 4MIX_B 100.0 3.6e-50 6.3e-55 429.5 >4MIX_B Putative insecticidal toxin (E.C.2.4.1.-); tyrosine glycosylation, UDP-GlcNAc, nucleotide-binding domain; HET: UD1; 1.8A {Photorhabdus asymbiotica subsp. asymbiotica}
PVClopT_1 PAU_02112 PAU_02074 5IV5 5IV5_B 99.4 5.2e-17 9.1e-22 110.8 >5IV5_BB Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVClopT_2 PAU_02111 PAU_02073 3J9Q 3J9Q_C 100.0 7.7e-34 1.3e-38 240.5 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVClopT_4 PAU_02110 PAU_02072 3J9Q 3J9Q_C 99.9 1.2e-30 2.1e-35 224.2 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVClopT_5 PAU_02109 PAU_02071 5W5F 5W5F_M 99.0 4.7e-13 8.2e-18 92.0 >5W5F_M Tail tube protein gp19; T4 tail tube, dose limit;{Enterobacteria phage T4 sensu lato}
PVClopT_6 PAU_02108 PAU_02070 5EUL 5EUL_E 64.4 3.6 6.3e-05 24.0 >5EUL_E SecA, SecY, SecE, AYC08; SecY, SecA, ATPase, channel, PROTEIN; HET: ADP, TBR; 3.7A {Bacillus subtilis (strain 168)}
PVClopT_7 PAU_02107 PAU_02069 2XAC 2XAC_C 38.6 18 0.00032 24.6 >2XAC_C VASCULAR ENDOTHELIAL GROWTH FACTOR B; TRANSFERASE-SIGNALING PROTEIN COMPLEX, ANGIOGENESIS, CYSTEINE-KNOT; 2.71A {HOMO SAPIENS}
PVClopT_8 PAU_02106 PAU_02068 2P5Z 2P5Z_X 99.9 7.7e-31 1.3e-35 235.8 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVClopT_9 PAU_02105 PAU_02067 2IA7 2IA7_A 99.6 5.4e-20 9.5e-25 121.9 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVClopT_10 PAU_02104 PAU_02066 5FMJ 5FMJ_B 50.9 8.9 0.00016 23.4 >5FMJ_B BCL-2-LIKE PROTEIN 1, BAK1 PROTEIN; BCL-XL, BAK, BH3 DOMAIN, APOPTOSIS; HET: EDO; 2.43A {HOMO SAPIENS}
PVClopT_11 PAU_02103 PAU_02065 3H2T 3H2T_A 96.4 8.1e-05 1.4e-09 78.8 >3H2T_A Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVClopT_12 PAU_02102 PAU_02064 2FFM 2FFM_A 38.8 18 0.00032 31.7 >2FFM_A SAV1430; alpha-beta protein., Structural Genomics, PSI; 2.51A {Staphylococcus aureus subsp. aureus Mu50} SCOP: d.267.1.1
PVClopT_14 PAU_02101 PAU_02063 2GOM 2GOM_A 21.2 59.0 0.001 26.8 >2GOM_A Fibrinogen-binding protein; three-helix closed bundle with left-hand; 1.25A {Staphylococcus aureus} SCOP: a.7.17.1
PVClopT_15 PAU_02100 PAU_02062 5E7P 5E7P_B 99.7 6.9e-22 1.2e-26 195.4 >5E7P_B Cell division control protein Cdc48; AAA ATPase, M. Smegmatic, RecA; HET: PG4, PGE, GOL, ADP; 2.507A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
PVClopT_16 PAU_02099 PAU_02061 3OIZ 3OIZ_A 23.6 49.0 0.00086 21.8 >3OIZ_A Antisigma-factor antagonist, STAS; PSI-2, Midwest Center for Structural; 1.65A {Rhodobacter sphaeroides}
PVClopT_17 PAU_02098 PAU_02060 2EC5 2EC5_A 100.0 1e-84 1.8e-89 669.9 >2EC5_A Dermonecrotic toxin; Pasteurella multocida toxin, Cys1159Ser mutant; 2.6A {Pasteurella multocida} SCOP: c.150.1.2, d.3.1.17, a.296.1.1
PVClopT_18 PAU_02097 PAU_02059 5O9Z 5O9Z_Q 64.0 3.7 6.6e-05 37.9 >5O9Z_Q Pre-mRNA-processing-splicing factor 8, 116 kDa; Spliceosome, pre-mRNA splicing, macromolecular complex; 4.5A {Homo sapiens}
PVClopT_19 PAU_02096 PAU_02058 1UKF 1UKF_A 99.8 9.4e-25 1.6e-29 182.9 >1UKF_A Avirulence protein AVRPPH3; AvrPphB, AvrPph3, Avirulence, Hypersensitive Response; 1.35A {Pseudomonas syringae pv. phaseolicola} SCOP: d.3.1.10
PVClopT_20 PAU_02095 PAU_02057 4IGL 4IGL_D 100.0 1.9e-55 3.3e-60 420.2 >4IGL_D YenB, YenC2; Beta-Propeller, RHS, toxin complex, Toxin; HET: GOL; 2.49A {Yersinia}
PVCunit1_1 afp1 PAU_02775 5IV5 5IV5_F 99.5 1.8e-17 3.2e-22 113.5 >5IV5_FH Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCunit1_2 afp2 PAU_02776 3J9Q 3J9Q_C 100.0 1.1e-35 1.9e-40 252.7 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit1_3 afp3 PAU_02777 3J9Q 3J9Q_C 100.0 9.7e-35 1.7e-39 254.8 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit1_4 afp4 PAU_02778 3J9Q 3J9Q_C 99.9 3.8e-29 6.7e-34 215.6 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit1_5 afp5 PAU_02779 5IV5 5IV5_R 99.1 1.1e-13 1.9e-18 95.1 >5IV5_R Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCunit1_6 afp7 PAU_02780 4E71 4E71_A 47.5 11 0.00019 23.5 >4E71_A Plexin-B2; plexin, transmembrane, signaling, rbd, Structural; 2.26A {Homo sapiens}
PVCunit1_7 afp7 PAU_02781 5A3A 5A3A_A 59.7 5.1 8.8e-05 32.5 >5A3A_A SIR2 FAMILY PROTEIN (E.C.2.4.2.30); TRANSFERASE, P-RIBOSYLTRANSFERASE, METALLOPROTEIN, NAD-DEPENDENT, LIPOYLATION; HET: EDO, GLY; 1.54A {STREPTOCOCCUS PYOGENES}
PVCunit1_8 PAU_02796 PAU_02782 2P5Z 2P5Z_X 99.9 2.7e-32 4.7e-37 245.2 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVCunit1_9 afp9 PAU_02783 2IA7 2IA7_A 99.6 4.5e-19 7.8e-24 118.4 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVCunit1_10 afp10 PAU_02784 1YOV 1YOV_C 43.2 14 0.00025 30.9 >1YOV_C Amyloid protein-binding protein 1, Ubiquitin-activating; ubiquitin, NEDD8, E1, APPBP1, UBA3; 2.6A {Homo sapiens} SCOP: c.111.1.2
PVCunit1_11 afp11 PAU_02785 3H2T 3H2T_A 96.4 6.9e-05 1.2e-09 76.4 >3H2T_A Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVCunit1_12 afp12 PAU_02786 2JY8 2JY8_A 22.9 52.0 0.00091 28.5 >2JY8_A Ubiquitin-binding protein p62; ubiquitin binding, ubiquitin associated domain; NMR {Homo sapiens} SCOP: a.5.2.1
PVCunit1_13 PAU_02801 PAU_02787 2FKK 2FKK_A 97.8 5e-08 8.7e-13 85.0 >2FKK_A Baseplate structural protein Gp10; Bacteriophage T4 Baseplate ; HET: EDO; 1.2A {Enterobacteria phage T4}
PVCunit1_14 orf25 PAU_02788 4I7W 4I7W_A 24.8 45.0 0.00079 30.2 >4I7W_A Dihydrodipicolinate synthase (E.C.4.2.1.52); TIM BARREL, lysine biosynthesis, pyruvate; HET: LYS; 1.3A {Agrobacterium sp.}
PVCunit1_15 PAU_02803 PAU_02789 5E7P 5E7P_B 99.8 6e-24 1.1e-28 210.1 >5E7P_B Cell division control protein Cdc48; AAA ATPase, M. Smegmatic, RecA; HET: PG4, PGE, GOL, ADP; 2.507A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
PVCunit1_16 PAU_02804 PAU_02790 3FM2 3FM2_A 24.5 46.0 0.0008 25.5 >3FM2_A Uncharacterized protein, distantly related to; STRUCTURAL GENOMICS, JOINT CENTER FOR; HET: ACT; 1.8A {Anabaena variabilis ATCC 29413}
PVCunit1_17 hrpN PAU_02791 2I88 2I88_A 79.9 0.82 1.4e-05 40.9 >2I88_A Colicin-E1; protein-membrane interactions, toxin-membrane interactions, toxin; 2.5A {Escherichia coli}
PVCunit1_18 PAU_02806 PAU_02792 5SVA 5SVA_V 36.3 21 0.00037 31.7 >5SVA_V DNA-directed RNA polymerase II subunit; Transcriptional Initiation, Mediator, Pre-Initiation Complex; 15.3A {Saccharomyces cerevisiae}
PVCunit1_19 PAU_02807 PAU_02793 5E24 5E24_D 26.0 41.0 0.00072 24.2 >5E24_D Maltose-binding periplasmic protein, Protein hairless; Notch Signaling, Suppressor of Hairless; HET: EDO, MTT; 2.14A {Escherichia coli O157:H7}
PVCunit1_20 PAU_02808 PAU_02794 2XR4 2XR4_B 100.0 2.1e-34 3.8e-39 230.8 >2XR4_B LECTIN; SUGAR BINDING PROTEIN, LUNG, PATHOGEN; HET: SO4; 1.9A {BURKHOLDERIA CENOCEPACIA}
PVCpnf_1 PAK_3544 PAK_03203 5IV5 5IV5_D 99.4 4.6e-17 8e-22 111.5 >5IV5_DE Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCpnf_2 PAK_3543 PAK_03202 3J9Q 3J9Q_C 100.0 5.5e-34 9.6e-39 241.9 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCpnf_3 PAK_3542 PAK_03201 3J9Q 3J9Q_C 99.9 4.4e-31 7.7e-36 230.3 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCpnf_4 PAK_3541 PAK_03200 3J9Q 3J9Q_C 99.9 2.2e-28 3.9e-33 210.9 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCpnf_5 PAK_3540 PAK_03199 5IV5 5IV5_B 99.0 2.1e-13 3.6e-18 93.8 >5IV5_BC Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCpnf_6 PAK_3539 PAK_03198 3SLS 3SLS_B 75.1 1.4 2.5e-05 26.7 >3SLS_B Dual specificity mitogen-activated protein kinase; Serine-threonine kinase, Signalling, TRANSFERASE-TRANSFERASE INHIBITOR; HET: 77D, ANP; 2.3A {Homo sapiens}
PVCpnf_7 PAK_3538 PAK_03197 4LID 4LID_B 25.8 42.0 0.00073 27.5 >4LID_B A-100; VIRAL PROTEIN, Hyperthermophilic viral protein; 3.0A {Sulfolobus spindle-shaped virus 1}
PVCpnf_8 PAK_3537 PAK_03196 2P5Z 2P5Z_X 99.9 2.1e-28 3.7e-33 220.4 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVCpnf_9 PAK_3536 PAK_03195 2IA7 2IA7_A 99.5 8.1e-18 1.4e-22 111.5 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVCpnf_10 PAK_3535 PAK_03194 1UKF 1UKF_A 56.9 6.1 0.00011 30.5 >1UKF_A Avirulence protein AVRPPH3; AvrPphB, AvrPph3, Avirulence, Hypersensitive Response; 1.35A {Pseudomonas syringae pv. phaseolicola} SCOP: d.3.1.10
PVCpnf_11 PAK_3534 PAK_03193 3H2T 3H2T_A 96.2 0.00013 2.3e-09 72.7 >3H2T_A Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVCpnf_12 PAK_3533 PAK_03192 1PYA 1PYA_A 28.2 36.0 0.00062 31.3 >1PYA_A PYRUVOYL-DEPENDENT HISTIDINE DECARBOXYLASE (L-HISTIDINE CARBOXYLASE); CARBOXY-LYASE; 2.5A {Lactobacillus sp. 30A} SCOP: d.155.1.1
PVCpnf_13 PAK_3532 PAK_03191 2FKK 2FKK_A 96.9 8.3e-06 1.4e-10 71.8 >2FKK_A Baseplate structural protein Gp10; Bacteriophage T4 Baseplate ; HET: EDO; 1.2A {Enterobacteria phage T4}
PVCpnf_14 PAK_3531 PAK_03190 5JY5 5JY5_B 26.3 40.0 0.00071 23.5 >5JY5_B Thioredoxin; Thioredoxin 1 Cryptococcus neoformans X-ray; HET: GOL, SO4; 1.8A {Cryptococcus neoformans var. grubii serotype A}
PVCpnf_15 PAK_3530 PAK_03189 5E7P 5E7P_B 99.7 2.6e-22 4.5e-27 198.6 >5E7P_B Cell division control protein Cdc48; AAA ATPase, M. Smegmatic, RecA; HET: PG4, PGE, GOL, ADP; 2.507A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
PVCpnf_16 PAK_3529 PAK_03188 3T5S 3T5S_A 34.5 24 0.00041 26.1 >3T5S_A Macrophage migration inhibitory factor; SSGCID, Structural Genomics, Seattle Structural; 2.3A {Giardia lamblia}
PVCpnf_17 PAK_3527 PAK_03187 4WYQ 4WYQ_B 44.5 13 0.00023 18.2 >4WYQ_B Dicer (E.C.3.1.26.3), Trans-activation-responsive RNA-binding protein; RNA interference, microRNA, dsRBP, dsRBD; 3.2A {Homo sapiens}
PVCpnf_18 PAK_3526 PAK_03186 3SZP 3SZP_A 99.7 3.4e-21 5.9e-26 120.2 >3SZP_A Transcriptional regulator, LysR family; winged helix-turn helix, DNA-binding, transcription; 2.202A {Vibrio cholerae}
PVCpnf_19 PAK_3525 PAK_03185 4MIX 4MIX_B 99.9 8.9e-32 1.6e-36 228.1 >4MIX_B Putative insecticidal toxin (E.C.2.4.1.-); tyrosine glycosylation, UDP-GlcNAc, nucleotide-binding domain; HET: UD1; 1.8A {Photorhabdus asymbiotica subsp. asymbiotica}
PVCpnf_20 PAK_3524 PAK_03184 4LDE 4LDE_A 99.4 2e-16 3.5e-21 97.6 >4LDE_A Lysozyme, Beta-2 adrenergic receptor (E.C.3.2.1.17); G protein coupled receptor, MEMBRANE; HET: P0G, 1WV; 2.79A {Enterobacteria phage T4, Homo sapiens}
PVCpnf_21 PAK_3523 PAK_03183 3HDF 3HDF_B 99.7 1.5e-21 2.7e-26 119.9 >3HDF_B Lysozyme (E.C.3.2.1.17); lysozyme-like, Antimicrobial, Bacteriolytic enzyme, Glycosidase; HET: GOL, NO3; 1.7A {Enterobacteria phage P21}
PVCpnf_22 PAK_3522 PAK_03182 5KKV 5KKV_A 62.7 4.1 7.2e-05 26.0 >5KKV_A GCN4-p2L; GCN4 coiled-coil, PROTEIN FIBRIL; 1.9A {N/A}
PVCpnf_23 PAK_3521 PAK_03181 1XJU 1XJU_B 100.0 1.9e-40 3.4e-45 228.5 >1XJU_B Lysozyme (E.C.3.2.1.17); secreted inactive conformation, HYDROLASE; HET: SO4; 1.07A {Enterobacteria phage P1} SCOP: d.2.1.3
PVCcif_1 PAK_1969 PAK_01787 5IV5 5IV5_S 99.6 1.1e-18 1.8e-23 119.6 >5IV5_S Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCcif_2 PAK_1970 PAK_01788 3J9Q 3J9Q_C 99.9 4.7e-32 8.3e-37 231.0 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCcif_3 PAK_1971 PAK_01789 3J9Q 3J9Q_C 99.9 9.9e-30 1.7e-34 224.5 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCcif_4 PAK_1972 PAK_01790 3J9Q 3J9Q_C 99.9 7.7e-29 1.4e-33 213.5 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCcif_5 PAK_1973 PAK_01791 5IV5 5IV5_F 98.9 6.2e-13 1.1e-17 91.4 >5IV5_FI Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCcif_6 PAK_1974 PAK_01792 3RJR 3RJR_C 45.6 12 0.00021 24.9 >3RJR_C Transforming growth factor beta-1; TGF beta, activation, integrin, Cytokine; HET: NAG; 3.05A {Sus scrofa}
PVCcif_7 PAK_1975 PAK_01793 5A3A 5A3A_A 66.2 3.2 5.6e-05 33.6 >5A3A_A SIR2 FAMILY PROTEIN (E.C.2.4.2.30); TRANSFERASE, P-RIBOSYLTRANSFERASE, METALLOPROTEIN, NAD-DEPENDENT, LIPOYLATION; HET: EDO, GLY; 1.54A {STREPTOCOCCUS PYOGENES}
PVCcif_8 PAK_1976 PAK_01794 2P5Z 2P5Z_X 99.9 3.5e-30 6.1e-35 231.6 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVCcif_9 PAK_1977 PAK_01795 2IA7 2IA7_A 99.6 1.8e-19 3.1e-24 120.3 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVCcif_10 PAK_1978 PAK_01796 5C2Y 5C2Y_A 35.5 22 0.00039 27.4 >5C2Y_A RNA polymerase II subunit B1; regulator of transcription, zinc finger; HET: SO4; 2.6A {Saccharomyces cerevisiae}
PVCcif_11 PAK_1979 PAK_01797 3H2T 3H2T_A 96.3 9.7e-05 1.7e-09 75.1 >3H2T_A Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVCcif_12 PAK_1980 PAK_01798 2LG1 2LG1_A 63.2 4.0 6.9e-05 34.2 >2LG1_A A-kinase anchor protein 13; METAL BINDING PROTEIN; NMR {Homo sapiens}
PVCcif_13 PAK_1981 PAK_01799 2FKK 2FKK_A 97.3 1.6e-06 2.8e-11 72.6 >2FKK_A Baseplate structural protein Gp10; Bacteriophage T4 Baseplate ; HET: EDO; 1.2A {Enterobacteria phage T4}
PVCcif_14 PAK_1982 PAK_01800 3Q1C 3Q1C_A 19.4 68.0 0.0012 34.2 >3Q1C_A LEE-encoded effector EspG; VirA fold, virulence factor, PAK; 1.596A {Escherichia coli O127:H6}
PVCcif_15 PAK_1983 PAK_01801 5E7P 5E7P_B 99.7 1.4e-20 2.5e-25 186.3 >5E7P_B Cell division control protein Cdc48; AAA ATPase, M. Smegmatic, RecA; HET: PG4, PGE, GOL, ADP; 2.507A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
PVCcif_16 PAK_1984 PAK_01802 3FXD 3FXD_B 34.1 24.0 0.00043 28.1 >3FXD_B Protein IcmQ, Protein IcmR; 4 helix bundle, helix-turn-helix, UNKNOWN; 2.1A {Legionella pneumophila}
PVCcif_17 PAK_1985 PAK_01803 4FBJ 4FBJ_A 100.0 8.4e-93 1.5e-97 629.0 >4FBJ_A Hypothetical protein, NEDD8; Effector-Host target complex, Glutamine deamidase; 1.6A {Photorhabdus luminescens subsp. laumondii}
PVCcif_18 PAK_1986 PAK_01804 2I71 2I71_B 28.5 35 0.00061 31.7 >2I71_B Hypothetical protein; Structural Genomics, APC6294, Conserved hypothetical; 1.7A {Sulfolobus solfataricus} SCOP: e.72.1.1
PVCcif_19 PAK_1987 PAK_01805 5EWK 5EWK_A 97.4 8.2e-07 1.4e-11 73.9 >5EWK_A Putative ADP-Ribosyltransferase Scabin (E.C.2.4.2.31); transferase, inhibitor, TRANSFERASE-TRANSFERASE INHIBITOR complex; HET: P34; 1.6A {Streptomyces scabiei 87.22}
PVCcif_20 PAK_1988 PAK_01806 5NB9 5NB9_A 61.0 4.6 8.1e-05 32.3 >5NB9_A RNA chaperone ProQ; FinO, ProQ, RNA, chaperone; NMR {Escherichia coli O45:K1 (strain S88 / ExPEC)}
PVClumt_0 PAK_2217 PAK_02015 6EKT 6EKT_A 99.6 8.2e-20 1.4e-24 171.8 >6EKT_A p-47 protein; lipid binding, LIPID BINDING PROTEIN; 1.75A {Clostridium botulinum (strain Kyoto / Type A2)}
PVClumt_1 PAK_2216 PAK_02014 5W5F 5W5F_M 99.4 5.7e-17 1e-21 111.1 >5W5F_M Tail tube protein gp19; T4 tail tube, dose limit;{Enterobacteria phage T4 sensu lato}
PVClumt_2 PAK_2215 PAK_02013 3J9Q 3J9Q_C 99.6 1.1e-18 1.9e-23 149.7 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVClumt_3 PAK_2214 PAK_02012 3J9Q 3J9Q_C 97.8 5.3e-08 9.2e-13 68.7 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVClumt_4 PAK_2213 PAK_02011 3J9Q 3J9Q_C 99.9 2.7e-26 4.7e-31 197.2 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVClumt_5 PAK_2212 PAK_02010 5IV5 5IV5_B 99.2 2e-14 3.5e-19 99.1 >5IV5_BC Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVClumt_6 PAK_2211 PAK_02009 1USD 1USD_A 70.9 2.2 3.8e-05 24.5 >1USD_A VASODILATOR-STIMULATED PHOSPHOPROTEIN; SIGNALING PROTEIN, PHOSPHORYLATION, ACTIN-BINDING, KINASE; 1.7A {HOMO SAPIENS} SCOP: h.1.29.1
PVClumt_7 PAK_2210 PAK_02008 3D1B 3D1B_A 28.2 36.0 0.00062 28.4 >3D1B_A RNA-induced transcriptional silencing complex protein; all alpha motif, RITS complex; 1.7A {Schizosaccharomyces pombe}
PVClumt_8 PAK_2209 PAK_02007 2P5Z 2P5Z_X 99.8 2.3e-23 4e-28 187.1 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVClumt_9 PAK_2208 PAK_02006 2IA7 2IA7_A 99.5 9.7e-18 1.7e-22 112.0 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVClumt_10 PAK_2207 PAK_02005 4JIW 4JIW_L 69.9 2.3 4.1e-05 27.1 >4JIW_L Tail-associated lysozyme (E.C.3.2.1.17), Putative uncharacterized; PAAR-repeat motif, membrane piercing, type; 3.402A {Enterobacteria phage T4}
PVClumt_11 PAK_2206 PAK_02004 5CNZ 5CNZ_B 28.7 34 0.0006 20.1 >5CNZ_B MHC class I antigen, Beta-2-microglobulin; Fish MHC class I, Evolution; 1.74A {Ctenopharyngodon idella}
PVClumt_96 PAK_2205 PAK_02003 3H2T 3H2T_A 94.4 0.0048 8.5e-08 52.9 >3H2T_A Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVClumt_12 PAK_2204 PAK_02002 1FHO 1FHO_A 30.0 31 0.00055 27.4 >1FHO_A UNC-89; Pleckstrin Homology domain, electrostatics, muscle; NMR {Caenorhabditis elegans} SCOP: b.55.1.1
PVClumt_13 PAK_2203 PAK_02001 1V1H 1V1H_F 92.6 0.026 4.5e-07 42.9 >1V1H_F FIBRITIN, FIBER PROTEIN; ADENOVIRUS, CHIMERA, FIBER PROTEIN; 1.9A {HUMAN ADENOVIRUS TYPE 2, BACTERIOPHAGE T4} SCOP: b.83.1.1, h.1.17.1
PVClumt_97 PAK_2202 PAK_02000 6EKT 6EKT_A 99.3 5.8e-16 1e-20 152.5 >6EKT_A p-47 protein; lipid binding, LIPID BINDING PROTEIN; 1.75A {Clostridium botulinum (strain Kyoto / Type A2)}
PVClumt_98 PAK_2201 PAK_01999 4AK2 4AK2_A 68.6 2.6 4.6e-05 39.1 >4AK2_A BT_4661; HEPARIN-BINDING PROTEIN, HEPARAN SULPHATE; HET: SGN, IDS; 1.35A {BACTEROIDES THETAIOTAOMICRON}
PVClumt_99 PAK_2200 PAK_01998 3K8P 3K8P_C 33.4 25.0 0.00044 34.3 >3K8P_C Dsl1, Protein transport protein SEC39; Intracellular trafficking, Dsl1 complex, multisubunit; 2.6A {Kluyveromyces lactis}
PVClumt_15 PAK_2199 PAK_01997 5E7P 5E7P_A 99.7 2.5e-22 4.4e-27 198.9 >5E7P_A Cell division control protein Cdc48; AAA ATPase, M. Smegmatic, RecA; HET: PGE, GOL, ADP, PG4; 2.507A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
PVClumt_16 PAK_2198 PAK_01996 1PDO 1PDO_A 56.8 6.1 0.00011 30.1 >1PDO_A MANNOSE PERMEASE; PHOSPHOENOLPYRUVATE DEPENDENT PHOSPHOTRANSFERASE SYSTEM, PHOSPHOTRANSFERASE; 1.7A {Escherichia coli} SCOP: c.54.1.1
PVClumt_17 PAK_2197 PAK_01995 1WRD 1WRD_A 44.0 13.0 0.00023 33.0 >1WRD_A Target of Myb protein 1/Ubiquitin; THREE-HELIX BUNDLE, UBIQUITIN-BINDING PROTEIN, PROTEIN; 1.75A {Bos taurus} SCOP: a.7.8.1
PVClumt_18 PAK_2195 PAK_01994 4MIX 4MIX_A 100.0 1.8e-38 3.1e-43 307.8 >4MIX_A Putative insecticidal toxin (E.C.2.4.1.-); tyrosine glycosylation, UDP-GlcNAc, nucleotide-binding domain; HET: UD1; 1.8A {Photorhabdus asymbiotica subsp. asymbiotica}
PVClopT_1 PAK_2092 PAK_01896 5IV5 5IV5_D 99.4 5.5e-17 9.7e-22 110.7 >5IV5_DE Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVClopT_2 PAK_2091 PAK_01895 3J9Q 3J9Q_C 100.0 5.2e-34 9.1e-39 241.6 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVClopT_4 PAK_2090 PAK_01894 3J9Q 3J9Q_C 99.9 7e-29 1.2e-33 213.3 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVClopT_5 PAK_2089 PAK_01893 5IV5 5IV5_D 98.9 8e-13 1.4e-17 90.9 >5IV5_DF Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVClopT_6 PAK_2088 PAK_01892 4F6T 4F6T_B 49.6 9.6 0.00017 24.6 >4F6T_B Molybdenum storage protein subunit beta; molybdenum storage, ATP hydrolyzation, hexamer; HET: ATP, 6M0, 8M0; 1.6A {Azotobacter vinelandii}
PVClopT_7 PAK_2087 PAK_01891 2XAC 2XAC_C 65.6 3.3 5.8e-05 28.3 >2XAC_C VASCULAR ENDOTHELIAL GROWTH FACTOR B; TRANSFERASE-SIGNALING PROTEIN COMPLEX, ANGIOGENESIS, CYSTEINE-KNOT; 2.71A {HOMO SAPIENS}
PVClopT_8 PAK_2086 PAK_01890 2P5Z 2P5Z_X 99.9 2e-29 3.6e-34 226.7 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVClopT_9 PAK_2085 PAK_01889 2IA7 2IA7_A 99.6 3.5e-20 6.1e-25 121.3 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVClopT_10 PAK_2084 PAK_01888 3OJO 3OJO_B 65.0 3.5 6.1e-05 32.9 >3OJO_B Cap5O; Rossmann fold, complex with cofactor; HET: PDC, NAD; 2.5A {Staphylococcus aureus}
PVClopT_11 PAK_2083 PAK_01887 3H2T 3H2T_A 96.0 0.00025 4.3e-09 75.2 >3H2T_A Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVClopT_12 PAK_2082 PAK_01886 1PQX 1PQX_A 35.9 22 0.00038 31.3 >1PQX_A conserved hypothetical protein; ZR18,NMR structure, AUTOSTRUCTURE,SPINS,AUTOASSIGN, Northeast Structural; NMR {Staphylococcus aureus subsp. aureus Mu50} SCOP: d.267.1.1
PVClopT_14 PAK_2081 PAK_01885 1Z8U 1Z8U_C 28.5 35.0 0.00061 30.2 >1Z8U_C Alpha-hemoglobin stabilizing protein, Hemoglobin alpha; alpha haemoglobin, AHSP, oxidation, interaction; HET: HEM; 2.4A {Homo sapiens} SCOP: a.7.11.1
PVClopT_15 PAK_2080 PAK_01884 5E7P 5E7P_B 99.7 6.9e-22 1.2e-26 195.4 >5E7P_B Cell division control protein Cdc48; AAA ATPase, M. Smegmatic, RecA; HET: PG4, PGE, GOL, ADP; 2.507A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
PVClopT_16 PAK_2079 PAK_01883 4X8K 4X8K_B 32.3 27.0 0.00048 28.0 >4X8K_B Sigma A Domain 2, RbpA; Transcription activator, Sigma factor; HET: SO4, EDO; 2.202A {Mycobacterium tuberculosis}
PVClopT_17 PAK_2078 PAK_01882 3WYG 3WYG_D 35.4 23 0.00039 23.6 >3WYG_D Gsp1p, Exportin-1, cAMP-dependent protein kinase; HEAT REPEAT, NUCLEAR EXPORT, GTP-BINDING; HET: GTP; 2.15A {Saccharomyces cerevisiae AWRI796}
PVClopT_18 PAK_2077 PAK_01881 1UKF 1UKF_A 99.8 2e-23 3.5e-28 175.0 >1UKF_A Avirulence protein AVRPPH3; AvrPphB, AvrPph3, Avirulence, Hypersensitive Response; 1.35A {Pseudomonas syringae pv. phaseolicola} SCOP: d.3.1.10
PVClopT_19 PAK_2075 PAK_01880 1T3C 1T3C_B 96.2 0.00014 2.4e-09 81.2 >1T3C_B neurotoxin type E (E.C.3.4.24.69); Clostridium botulinum, catalytic domain, E212Q; 1.9A {Clostridium botulinum} SCOP: d.92.1.7
PVCunit1_1 PAK_2876 PAK_02606 5IV5 5IV5_D 99.5 1.5e-17 2.6e-22 113.9 >5IV5_DE Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCunit1_2 PAK_2877 PAK_02607 3J9Q 3J9Q_C 100.0 1.8e-33 3.1e-38 239.1 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit1_3 PAK_2878 PAK_02608 3J9Q 3J9Q_C 100.0 4e-34 6.9e-39 250.4 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit1_4 PAK_2879 PAK_02609 3J9Q 3J9Q_C 99.9 3.7e-29 6.5e-34 215.6 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit1_5 PAK_2880 PAK_02610 5W5F 5W5F_M 99.0 1.8e-13 3.1e-18 94.1 >5W5F_M Tail tube protein gp19; T4 tail tube, dose limit;{Enterobacteria phage T4 sensu lato}
PVCunit1_6 PAK_2881 PAK_02611 5T87 5T87_G 77.8 1.1 1.9e-05 28.5 >5T87_G CdiI immunity protein, CdiA toxin; Contact-dependent growth inhibition, toxin, antitoxin; HET: MSE; 2.4A {Cupriavidus taiwanensis (strain DSM 17343 / BCRC 17206 / CIP 107171 / LMG 19424 / R1)}
PVCunit1_7 PAK_2882 PAK_02612 5A3A 5A3A_A 68.3 2.7 4.7e-05 34.0 >5A3A_A SIR2 FAMILY PROTEIN (E.C.2.4.2.30); TRANSFERASE, P-RIBOSYLTRANSFERASE, METALLOPROTEIN, NAD-DEPENDENT, LIPOYLATION; HET: EDO, GLY; 1.54A {STREPTOCOCCUS PYOGENES}
PVCunit1_8 PAK_2883 PAK_02613 2P5Z 2P5Z_X 99.9 1.4e-31 2.5e-36 240.6 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVCunit1_9 PAK_2884 PAK_02614 2IA7 2IA7_A 99.6 5.8e-19 1e-23 117.9 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVCunit1_10 PAK_2885 PAK_02615 1JWB 1JWB_B 52.0 8.3 0.00015 26.2 >1JWB_B MOLYBDOPTERIN BIOSYNTHESIS MOEB PROTEIN, MOLYBDOPTERIN; MoeB: modified Rossmann fold ; HET: AMP; 2.1A {Escherichia coli} SCOP: c.111.1.1
PVCunit1_11 PAK_2886 PAK_02616 3H2T 3H2T_A 96.4 6.5e-05 1.1e-09 76.5 >3H2T_A Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVCunit1_12 PAK_2887 PAK_02617 3N7C 3N7C_B 30.3 31 0.00054 29.9 >3N7C_B Crystal structure of the C-terminal; Nuclear pore complex, NUP2, Ran-binding; 2.26A {Ashbya gossypii}
PVCunit1_13 PAK_2888 PAK_02618 2FKK 2FKK_A 97.6 2.5e-07 4.4e-12 82.7 >2FKK_A Baseplate structural protein Gp10; Bacteriophage T4 Baseplate ; HET: EDO; 1.2A {Enterobacteria phage T4}
PVCunit1_14 PAK_2889 PAK_02619 4E2I 4E2I_W 30.8 30.0 0.00052 25.8 >4E2I_W Large T antigen, DNA polymerase; replication initiation, Hydrolase-DNA binding complex; HET: ZN; 5.0A {Simian virus 40}
PVCunit1_15 PAK_2890 PAK_02620 5E7P 5E7P_A 99.8 1e-22 1.8e-27 201.3 >5E7P_A Cell division control protein Cdc48; AAA ATPase, M. Smegmatic, RecA; HET: PGE, GOL, ADP, PG4; 2.507A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
PVCunit1_16 PAK_2891 PAK_02621 3GGM 3GGM_A 49.2 9.8 0.00017 23.7 >3GGM_A uncharacterized protein BT9727_2919; Bacillus cereus group., Structural Genomics; 2.0A {Bacillus thuringiensis serovar konkukian}
PVCunit1_17 PAK_2892 PAK_02622 2I88 2I88_A 81.6 0.65 1.1e-05 40.9 >2I88_A Colicin-E1; protein-membrane interactions, toxin-membrane interactions, toxin; 2.5A {Escherichia coli}
PVCunit1_18 PAK_2893 PAK_02623 1T2K 1T2K_A 34.8 23 0.00041 28.4 >1T2K_A Interferon regulatory factor 3/Transcription factor; PROTEIN DNA COMPLEX, transcription, Transcription-DNA; 3.0A {Homo sapiens} SCOP: a.4.5.23
PVCunit1_19 PAK_2894 PAK_02624 2OE0 2OE0_B 67.8 2.8 4.9e-05 27.7 >2OE0_B Thioredoxin-3; electron transport, alpha/beta sandwich, dimer; 2.0A {Saccharomyces cerevisiae}
PVCunit1_20 PAK_2895 PAK_02625 2FKK 2FKK_A 96.3 9.3e-05 1.6e-09 58.2 >2FKK_A Baseplate structural protein Gp10; Bacteriophage T4 Baseplate ; HET: EDO; 1.2A {Enterobacteria phage T4}
PVCunit1_21 PAK_2896 PAK_02626 2XR4 2XR4_B 100.0 2.1e-35 3.7e-40 236.4 >2XR4_B LECTIN; SUGAR BINDING PROTEIN, LUNG, PATHOGEN; HET: SO4; 1.9A {BURKHOLDERIA CENOCEPACIA}
PVCcif_1 plu2531 PLT_02568 5IV5 5IV5_D 99.5 2.8e-18 4.9e-23 117.5 >5IV5_DE Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCcif_2 plu2530 PLT_02567 3J9Q 3J9Q_C 99.9 1.6e-31 2.8e-36 227.6 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCcif_3 plu2529 PLT_02566 3J9Q 3J9Q_C 100.0 2.8e-35 4.9e-40 258.0 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCcif_4 plu2528 PLT_02565 3J9Q 3J9Q_C 99.9 1.6e-28 2.7e-33 211.6 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCcif_5 plu2527 PLT_02564 5IV5 5IV5_I 99.0 2.1e-13 3.6e-18 93.8 >5IV5_IB Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCcif_6 plu2526 PLT_02563 1USE 1USE_A 70.0 2.3 4.1e-05 24.3 >1USE_A VASODILATOR-STIMULATED PHOSPHOPROTEIN; SIGNALING PROTEIN,, SIGNALING PROTEIN; 1.3A {HOMO SAPIENS} SCOP: h.1.29.1
PVCcif_7 plu2525 PLT_02562 2XAC 2XAC_C 35.0 23 0.0004 24.2 >2XAC_C VASCULAR ENDOTHELIAL GROWTH FACTOR B; TRANSFERASE-SIGNALING PROTEIN COMPLEX, ANGIOGENESIS, CYSTEINE-KNOT; 2.71A {HOMO SAPIENS}
PVCcif_8 plu2524 PLT_02561 2P5Z 2P5Z_X 99.9 4.3e-29 7.6e-34 224.6 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVCcif_9 plu2523 PLT_02560 2IA7 2IA7_A 99.7 3.3e-21 5.8e-26 127.4 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVCcif_10 plu2522 PLT_02559 4JIW 4JIW_L 63.7 3.8 6.7e-05 26.0 >4JIW_L Tail-associated lysozyme (E.C.3.2.1.17), Putative uncharacterized; PAAR-repeat motif, membrane piercing, type; 3.402A {Enterobacteria phage T4}
PVCcif_11 plu2521 PLT_02558 3H2T 3H2T_A 96.3 8.9e-05 1.6e-09 75.6 >3H2T_A Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVCcif_12 plu2520 PLT_02557 4D0N 4D0N_B 71.5 2.0 3.6e-05 39.6 >4D0N_B TRANSFORMING PROTEIN RHOA (E.C.3.6.5.2), A-KINASE; CELL CYCLE, AKAP13, LBC, AKAP-LBC; HET: GDP, SO4; 2.1A {HOMO SAPIENS}
PVCcif_13 plu2519 PLT_02556 2FKK 2FKK_A 96.6 3.5e-05 6.2e-10 67.7 >2FKK_A Baseplate structural protein Gp10; Bacteriophage T4 Baseplate ; HET: EDO; 1.2A {Enterobacteria phage T4}
PVCcif_14 plu2518 PLT_02555 5J4U 5J4U_A 47.3 11 0.00019 31.0 >5J4U_A Glutathione transferase family protein; GST, Complex, GSH, TRANSFERASE; HET: GSH; 1.249A {Populus trichocarpa}
PVCcif_15 plu2517 PLT_02554 5E7P 5E7P_B 99.7 2e-22 3.4e-27 199.4 >5E7P_B Cell division control protein Cdc48; AAA ATPase, M. Smegmatic, RecA; HET: PG4, PGE, GOL, ADP; 2.507A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
PVCcif_16 plu2516 PLT_02553 3GGM 3GGM_A 32.5 27 0.00047 22.9 >3GGM_A uncharacterized protein BT9727_2919; Bacillus cereus group., Structural Genomics; 2.0A {Bacillus thuringiensis serovar konkukian}
PVCcif_17 plu2515 PLT_02552 4FBJ 4FBJ_A 100.0 1e-103 2e-108 700.8 >4FBJ_A Hypothetical protein, NEDD8; Effector-Host target complex, Glutamine deamidase; 1.6A {Photorhabdus luminescens subsp. laumondii}
PVCcif_18 plu2514 PLT_02551 1LBU 1LBU_A 36.7 21.0 0.00036 28.1 >1LBU_A MURAMOYL-PENTAPEPTIDE CARBOXYPEPTIDASE; HYDROLASE, NUCLEAR RECEPTOR, CARBOXYPEPTIDASE; 1.8A {Streptomyces albus} SCOP: d.65.1.1, a.20.1.1
PVClopT_1 plu2385 PLT_02424 5IV5 5IV5_I 99.4 3.6e-17 6.3e-22 112.0 >5IV5_IA Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVClopT_2 plu2386 PLT_02425 3J9Q 3J9Q_C 99.9 9.3e-32 1.6e-36 228.6 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVClopT_3 plu2387 PLT_02426 3J9Q 3J9Q_C 99.9 1.5e-32 2.5e-37 238.6 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVClopT_4 plu2388 PLT_02427 3J9Q 3J9Q_C 99.9 8.2e-32 1.4e-36 231.1 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVClopT_5 plu2389 PLT_02428 5IV5 5IV5_R 98.8 3.7e-12 6.5e-17 87.6 >5IV5_R Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVClopT_6 plu2390 PLT_02429 1RH4 1RH4_A 49.4 9.7 0.00017 21.7 >1RH4_A RIGHT-HANDED COILED COIL TETRAMER; DE NOVO DESIGN; HET: IPA; 1.9A {synthetic construct} SCOP: k.17.1.1
PVClopT_7 plu2391 PLT_02430 5A3A 5A3A_A 64.3 3.7 6.4e-05 33.2 >5A3A_A SIR2 FAMILY PROTEIN (E.C.2.4.2.30); TRANSFERASE, P-RIBOSYLTRANSFERASE, METALLOPROTEIN, NAD-DEPENDENT, LIPOYLATION; HET: EDO, GLY; 1.54A {STREPTOCOCCUS PYOGENES}
PVClopT_8 plu2392 PLT_02431 2P5Z 2P5Z_X 99.9 3.4e-32 6e-37 244.6 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVClopT_9 plu2393 PLT_02432 2IA7 2IA7_A 99.7 1.3e-20 2.2e-25 124.9 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVClopT_10 plu2394 PLT_02433 4JIV 4JIV_D 57.1 6.0 0.00011 25.4 >4JIV_D Tail-associated lysozyme (E.C.3.2.1.17), Putative uncharacterized; PAAR-repeat motif, membrane piercing, type; HET: PLM, STE, ELA; 1.903A {Enterobacteria phage T4}
PVClopT_11 plu2395 PLT_02434 3H2T 3H2T_A 96.9 7.5e-06 1.3e-10 86.4 >3H2T_A Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVClopT_12 plu2396 PLT_02435 2JY8 2JY8_A 64.0 3.7 6.6e-05 34.8 >2JY8_A Ubiquitin-binding protein p62; ubiquitin binding, ubiquitin associated domain; NMR {Homo sapiens} SCOP: a.5.2.1
PVClopT_14 plu2397 PLT_02436 5MDX 5MDX_4 30.5 30.0 0.00053 31.3 >5MDX_4 Photosystem II protein D1 (E.C.1.10.3.9); photosynthesis, photosystem II supercomplex, single; HET: HEM, CLA, CHL, PHO;{Arabidopsis thaliana}
PVClopT_15 plu2398 PLT_02437 5E7P 5E7P_B 99.8 5.5e-23 9.6e-28 203.2 >5E7P_B Cell division control protein Cdc48; AAA ATPase, M. Smegmatic, RecA; HET: PG4, PGE, GOL, ADP; 2.507A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
PVClopT_16 plu2399 PLT_02438 4XHF 4XHF_B 29.6 32.0 0.00057 30.5 >4XHF_B NA(+)-TRANSLOCATING NADH-QUINONE REDUCTASE SUBUNIT C; FMN, OXIDOREDUCTASE, COVALENT FLAVINYLATION; HET: FMN; 1.76A {Shewanella oneidensis}
PVClopT_17 plu2400 PLT_02439 2EBF 2EBF_X 100.0 1.4e-88 2.4e-93 698.1 >2EBF_X Dermonecrotic toxin; Pasteurella multocida toxin, Trojan horse-like; HET: TRE; 1.9A {Pasteurella multocida} SCOP: d.3.1.17, c.150.1.2, a.296.1.1
PVClopT_18 plu2401 PLT_02440 1UKF 1UKF_A 99.8 6.8e-24 1.2e-28 177.7 >1UKF_A Avirulence protein AVRPPH3; AvrPphB, AvrPph3, Avirulence, Hypersensitive Response; 1.35A {Pseudomonas syringae pv. phaseolicola} SCOP: d.3.1.10
PVCunit1_1 plu1730 PLT_01758 5W5F 5W5F_M 99.4 1.9e-16 3.3e-21 108.5 >5W5F_M Tail tube protein gp19; T4 tail tube, dose limit;{Enterobacteria phage T4 sensu lato}
PVCunit1_2 plu1729 PLT_01757 3J9Q 3J9Q_C 100.0 2.7e-34 4.8e-39 243.7 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit1_3 plu1728 PLT_01756 3J9Q 3J9Q_C 100.0 1.8e-33 3.2e-38 246.4 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit1_4 plu1727 PLT_01755 3J9Q 3J9Q_C 99.9 6.8e-30 1.2e-34 219.6 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit1_5 plu1726 PLT_01754 5IV5 5IV5_I 99.1 7.4e-14 1.3e-18 96.0 >5IV5_IA Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCunit1_6 plu1725 PLT_01753 1USD 1USD_A 46.6 11 0.0002 21.4 >1USD_A VASODILATOR-STIMULATED PHOSPHOPROTEIN; SIGNALING PROTEIN, PHOSPHORYLATION, ACTIN-BINDING, KINASE; 1.7A {HOMO SAPIENS} SCOP: h.1.29.1
PVCunit1_7 plu1724 PLT_01752 5A3A 5A3A_A 43.3 14 0.00024 30.0 >5A3A_A SIR2 FAMILY PROTEIN (E.C.2.4.2.30); TRANSFERASE, P-RIBOSYLTRANSFERASE, METALLOPROTEIN, NAD-DEPENDENT, LIPOYLATION; HET: EDO, GLY; 1.54A {STREPTOCOCCUS PYOGENES}
PVCunit1_8 plu1723 PLT_01751 2P5Z 2P5Z_X 99.9 1.1e-30 2e-35 234.8 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVCunit1_9 plu1722 PLT_01750 5IV5 5IV5_B 99.3 2.9e-15 5.1e-20 106.8 >5IV5_BD Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCunit1_10 plu1721 PLT_01749 1I24 1I24_A 40.8 16 0.00028 27.5 >1I24_A SULFOLIPID BIOSYNTHESIS PROTEIN SQD1, NICOTINAMIDE-ADENINE-DINUCLEOTIDE; SDR, SHORT-CHAIN DEHYDROGENASE/REDUCTASE, ROSSMANN FOLD; HET: NAD, UPG, SO4; 1.2A {Arabidopsis thaliana} SCOP: c.2.1.2
PVCunit1_11 plu1720 PLT_01748 3H2T 3H2T_A 95.3 0.0012 2e-08 67.6 >3H2T_A Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVCunit1_12 plu1719 PLT_01747 2FFM 2FFM_A 56.2 6.4 0.00011 34.4 >2FFM_A SAV1430; alpha-beta protein., Structural Genomics, PSI; 2.51A {Staphylococcus aureus subsp. aureus Mu50} SCOP: d.267.1.1
PVCunit1_13 plu1718 PLT_01746 2FKK 2FKK_A 97.3 1.4e-06 2.4e-11 76.8 >2FKK_A Baseplate structural protein Gp10; Bacteriophage T4 Baseplate ; HET: EDO; 1.2A {Enterobacteria phage T4}
PVCunit1_14 plu1717 PLT_01745 2LXT 2LXT_C 12.6 130.0 0.0023 22.7 >2LXT_C CREB-binding protein (E.C.2.3.1.48), Histone-lysine N-methyltransferase; CREB binding protein, mixed-lineage leukemia; NMR {Homo sapiens}
PVCunit1_15 plu1716 PLT_01744 5E7P 5E7P_B 99.7 1.5e-21 2.6e-26 193.2 >5E7P_B Cell division control protein Cdc48; AAA ATPase, M. Smegmatic, RecA; HET: PG4, PGE, GOL, ADP; 2.507A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
PVCunit1_16 plu1715 PLT_01743 3GGM 3GGM_A 48.7 10 0.00018 24.9 >3GGM_A uncharacterized protein BT9727_2919; Bacillus cereus group., Structural Genomics; 2.0A {Bacillus thuringiensis serovar konkukian}
PVCunit1_17 plu1714 PLT_01742 1EB6 1EB6_A 83.9 0.44 7.7e-06 31.5 >1EB6_A NEUTRAL PROTEASE II (E.C.3.4.24.39); METALLOPROTEINASE, NEUTRAL PROTEASE II, HYDROLASE; HET: EDO; 1.0A {ASPERGILLUS ORYZAE} SCOP: d.92.1.12
PVCunit1_18 plu1713 PLT_01741 3TMH 3TMH_D 41.0 16.0 0.00028 26.3 >3TMH_D Na(+)/H(+) exchange regulatory cofactor NHE-RF3; alpha helical bundle, PDZ fold; 3.8A {Homo sapiens}
PVCunit1_19 plu1712 PLT_01740 2COL 2COL_A 96.9 1e-05 1.8e-10 76.0 >2COL_A Bifunctional hemolysin-adenylate cyclase (E.C.4.6.1.1); LYASE, Calcium binding, LYASE-METAL BINDING; 2.2A {Bordetella pertussis}
PVCunit2_1 plu1708 PLT_01736 5IV5 5IV5_B 99.4 3.5e-17 6.2e-22 112.1 >5IV5_BB Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCunit2_2 plu1707 PLT_01735 3J9Q 3J9Q_C 99.9 9.7e-33 1.7e-37 234.5 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit2_3 plu1706 PLT_01734 3J9Q 3J9Q_C 100.0 1.2e-33 2.1e-38 249.3 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit2_4 plu1705 PLT_01733 3J9Q 3J9Q_C 99.9 3.1e-29 5.4e-34 216.1 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit2_5 plu1704 PLT_01732 5IV5 5IV5_B 98.9 1.1e-12 1.9e-17 90.3 >5IV5_BB Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCunit2_6 plu1703 PLT_01731 4E71 4E71_A 46.2 12 0.00021 23.4 >4E71_A Plexin-B2; plexin, transmembrane, signaling, rbd, Structural; 2.26A {Homo sapiens}
PVCunit2_7 plu1702 PLT_01730 5A3A 5A3A_A 66.3 3.2 5.5e-05 33.6 >5A3A_A SIR2 FAMILY PROTEIN (E.C.2.4.2.30); TRANSFERASE, P-RIBOSYLTRANSFERASE, METALLOPROTEIN, NAD-DEPENDENT, LIPOYLATION; HET: EDO, GLY; 1.54A {STREPTOCOCCUS PYOGENES}
PVCunit2_8 plu1701 PLT_01729 2P5Z 2P5Z_X 99.9 4.8e-31 8.3e-36 237.2 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVCunit2_9 plu1700 PLT_01728 2IA7 2IA7_A 99.6 3.5e-19 6.1e-24 120.5 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVCunit2_10 plu1699 PLT_01727 2SOB 2SOB_A 40.6 16 0.00029 22.4 >2SOB_A STAPHYLOCOCCAL NUCLEASE; HYDROLASE (PHOSPHORIC DIESTER); NMR {Staphylococcus aureus} SCOP: b.40.1.1
PVCunit2_11 plu1698 PLT_01726 3H2T 3H2T_A 96.2 0.00013 2.3e-09 74.3 >3H2T_A Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVCunit2_12 plu1697 PLT_01725 2RIL 2RIL_A 24.5 46.0 0.00081 25.2 >2RIL_A Antibiotic biosynthesis monooxygenase; YP_001095275.1, Putative monooxygenase, Antibiotic biosynthesis; 1.26A {Shewanella loihica}
PVCunit2_13 plu1696 PLT_01724 1V1H 1V1H_F 95.2 0.0015 2.7e-08 52.2 >1V1H_F FIBRITIN, FIBER PROTEIN; ADENOVIRUS, CHIMERA, FIBER PROTEIN; 1.9A {HUMAN ADENOVIRUS TYPE 2, BACTERIOPHAGE T4} SCOP: b.83.1.1, h.1.17.1
PVCunit2_14 plu1695 PLT_01723 3K9K 3K9K_A 99.7 2.7e-22 4.7e-27 146.1 >3K9K_A Histone-lysine N-methyltransferase SETMAR (E.C.2.1.1.43); transposase, Chromatin regulator, DNA damage; 2.55A {Homo sapiens}
PVCunit2_15 plu1694 PLT_01722 1GYZ 1GYZ_A 18.2 76.0 0.0013 24.4 >1GYZ_A 50S RIBOSOMAL PROTEIN L20; RIBOSOMAL PROTEIN, RIBOSOME, PROTEIN SYNTHESIS; NMR {AQUIFEX AEOLICUS} SCOP: a.144.2.1
PVCunit2_16 plu1693 PLT_01721 5GJR 5GJR_M 99.7 2.2e-21 3.8e-26 188.0 >5GJR_M 26S protease regulatory subunit 4; protein complex, human proteasome, HYDROLASE; HET: ADP; 3.5A {Homo sapiens}
PVCunit2_17 plu1692 PLT_01720 3GGM 3GGM_A 76.6 1.2 2.1e-05 29.3 >3GGM_A uncharacterized protein BT9727_2919; Bacillus cereus group., Structural Genomics; 2.0A {Bacillus thuringiensis serovar konkukian}
PVCunit2_18 plu1691 PLT_01719 2GUT 2GUT_A 48.5 10 0.00018 28.7 >2GUT_A Positive cofactor 2 glutamine/Q-rich-associated protein; KIX, 3 HELICAL BUNDLE, TRANSCRIPTION; NMR {Homo sapiens}
PVCunit2_19 plu1690 PLT_01718 3ONQ 3ONQ_C 55.9 6.5 0.00011 22.6 >3ONQ_C Regulator of polyketide synthase expression; Structural Genomics, PSI-2, Protein Structure; HET: GOL, SO4; 2.098A {Bifidobacterium adolescentis}
PVCunit2_20 plu1689 PLT_01717 5MBV 5MBV_A 36.3 21 0.00037 30.0 >5MBV_A RecBCD enzyme subunit RecB (E.C.3.1.11.5); Inhibitor, Complex, DNA repair, Helicase/Nuclease;{Escherichia coli}
PVCunit3_1 plu1689 PLT_01716 5IV5 5IV5_F 99.4 3e-16 5.2e-21 107.5 >5IV5_FI Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCunit3_2 plu1688 PLT_01715 3J9Q 3J9Q_C 100.0 1.8e-33 3.2e-38 239.2 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit3_3 plu1687 PLT_01714 3J9Q 3J9Q_C 100.0 2.1e-33 3.6e-38 245.9 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit3_4 plu1686 PLT_01713 3J9Q 3J9Q_C 99.9 1e-29 1.8e-34 218.4 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit3_5 plu1685 PLT_01712 5IV5 5IV5_D 98.8 3e-12 5.3e-17 88.0 >5IV5_DE Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCunit3_6 plu1684 PLT_01711 2E3P 2E3P_B 77.2 1.1 2e-05 26.9 >2E3P_B Lipid-transfer protein CERT; LIPID TRANSFER PROTEIN, CERT, CERAMIDE; HET: 16C; 1.4A {Homo sapiens}
PVCunit3_7 plu1683 PLT_01710 2XAC 2XAC_C 45.5 12 0.00022 25.5 >2XAC_C VASCULAR ENDOTHELIAL GROWTH FACTOR B; TRANSFERASE-SIGNALING PROTEIN COMPLEX, ANGIOGENESIS, CYSTEINE-KNOT; 2.71A {HOMO SAPIENS}
PVCunit3_8 plu1682 PLT_01709 2P5Z 2P5Z_X 99.9 7.8e-32 1.4e-36 242.2 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVCunit3_9 plu1681 PLT_01708 2IA7 2IA7_A 99.5 1.3e-18 2.3e-23 116.2 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVCunit3_10 plu1680 PLT_01707 4IX9 4IX9_B 39.7 17 0.0003 24.8 >4IX9_B V-type proton ATPase subunit F; V-ATPase, stalk subunit, subunit F; HET: GOL, TRS; 2.33A {Saccharomyces cerevisiae}
PVCunit3_11 plu1679 PLT_01706 3H2T 3H2T_A 95.8 0.0004 7e-09 70.9 >3H2T_A Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVCunit3_12 plu1678 PLT_01705 3TPZ 3TPZ_B 27.1 38 0.00067 31.0 >3TPZ_B Ribosomal RNA small subunit methyltransferase; rRNA adenine dimethyltransferase, ribogenesis, TRANSFERASE; 2.1A {Escherichia coli}
PVCunit3_13 plu1677 PLT_01704 2FKK 2FKK_A 96.7 2.5e-05 4.4e-10 67.0 >2FKK_A Baseplate structural protein Gp10; Bacteriophage T4 Baseplate ; HET: EDO; 1.2A {Enterobacteria phage T4}
PVCunit3_14 plu1676 PLT_01703 5US5 5US5_B 18.3 75.0 0.0013 27.8 >5US5_B UPF0297 protein EF_1202; IreB, dimer, Structural Genomics, PSI-2; NMR {Enterococcus faecalis (strain ATCC 700802 / V583)}
PVCunit3_15 plu1675 PLT_01702 5E7P 5E7P_B 99.7 1.7e-22 2.9e-27 199.8 >5E7P_B Cell division control protein Cdc48; AAA ATPase, M. Smegmatic, RecA; HET: PG4, PGE, GOL, ADP; 2.507A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
PVCunit3_16 plu1674 PLT_01701 2OPA 2OPA_B 49.4 9.7 0.00017 22.5 >2OPA_B Probable tautomerase ywhB (E.C.5.3.2.-); homohexamer, 4-Oxalocrotonate Tautomerase, inhibitor, 2-Fluoro-p-Hydroxycinnamate; HET: FHC; 2.4A {Bacillus subtilis}
PVCunit3_17 plu1673 PLT_01700 5XXB 5XXB_e 50.5 9.1 0.00016 26.4 >5XXB_e uL2, uL3, uL4, uL18, eL6; parasitic ribosome, rRNA, rproteins, RIBOSOME; 3.17A {Toxoplasma gondii}
PVCunit3_18 plu1672 PLT_01699 4Q2G 4Q2G_B 27.6 37.0 0.00065 30.4 >4Q2G_B Phosphatidate cytidylyltransferase (E.C.2.7.7.41); intramembrane enzyme, CdsA fold, phospholipid; HET: BNG; 3.4A {Thermotoga maritima MSB8}
PVCunit3_19 plu1671 PLT_01698 2W8M 2W8M_B 24.2 47 0.00082 31.1 >2W8M_B ORF D212; SSV1, CRENARCHAEAL VIRUS, HYDROLASE; 2.4A {SULFOLOBUS VIRUS RAGGED HILLS}
PVCunit4_1 plu1667 PLT_01696 5W5F 5W5F_M 99.4 2.8e-17 5e-22 112.6 >5W5F_M Tail tube protein gp19; T4 tail tube, dose limit;{Enterobacteria phage T4 sensu lato}
PVCunit4_2 plu1666 PLT_01695 3J9Q 3J9Q_C 99.9 3.9e-33 6.8e-38 237.2 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit4_3 plu1665 PLT_01694 3J9Q 3J9Q_C 100.0 1.5e-34 2.7e-39 254.0 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit4_4 plu1664 PLT_01693 3J9Q 3J9Q_C 99.9 2e-29 3.5e-34 217.9 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit4_5 plu1663 PLT_01692 5IV5 5IV5_B 98.9 5.7e-13 9.9e-18 91.6 >5IV5_BC Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCunit4_6 plu1662 PLT_01691 1CZ0 1CZ0_B 61.8 4.4 7.7e-05 26.8 >1CZ0_B INTRON-ENCODED HOMING ENDONUCLEASE I-PPOI (E.C.3.1.-.-)/DNA; PROTEIN-DNA COMPLEX, DISTORTED DNA, HIS-CYS; 2.1A {Physarum polycephalum} SCOP: d.4.1.3
PVCunit4_7 plu1661 PLT_01690 5A3A 5A3A_A 63.6 3.9 6.8e-05 33.1 >5A3A_A SIR2 FAMILY PROTEIN (E.C.2.4.2.30); TRANSFERASE, P-RIBOSYLTRANSFERASE, METALLOPROTEIN, NAD-DEPENDENT, LIPOYLATION; HET: EDO, GLY; 1.54A {STREPTOCOCCUS PYOGENES}
PVCunit4_8 plu1660 PLT_01689 2P5Z 2P5Z_X 99.9 1.4e-32 2.4e-37 247.1 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVCunit4_9 plu1659 PLT_01688 2IA7 2IA7_A 99.6 4.7e-19 8.2e-24 119.9 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVCunit4_10 plu1658 PLT_01687 5C2Y 5C2Y_A 32.0 28 0.00049 26.9 >5C2Y_A RNA polymerase II subunit B1; regulator of transcription, zinc finger; HET: SO4; 2.6A {Saccharomyces cerevisiae}
PVCunit4_11 plu1657 PLT_01686 3H2T 3H2T_A 96.0 0.00026 4.6e-09 72.2 >3H2T_A Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVCunit4_12 plu1656 PLT_01685 4H3K 4H3K_E 28.9 34.0 0.00059 36.0 >4H3K_E Symplekin, RNA polymerase II subunit; Heat repeat, phosphatase, RNA polymerase; 2.0A {Homo sapiens}
PVCunit4_13 plu1655 PLT_01684 2FKK 2FKK_A 97.1 2.8e-06 4.9e-11 74.3 >2FKK_A Baseplate structural protein Gp10; Bacteriophage T4 Baseplate ; HET: EDO; 1.2A {Enterobacteria phage T4}
PVCunit4_14 plu1654 PLT_01683 2BPT 2BPT_B 15.6 95.0 0.0017 24.5 >2BPT_B IMPORTIN BETA-1 SUBUNIT, NUCLEOPORIN NUP1; NUCLEAR TRANSPORT, NUCLEOCYTOPLASMIC TRANSPORT, NUCLEAR; 1.99A {SACCHAROMYCES CEREVISIAE}
PVCunit4_15 plu1653 PLT_01682 5E7P 5E7P_B 99.7 1e-21 1.8e-26 194.5 >5E7P_B Cell division control protein Cdc48; AAA ATPase, M. Smegmatic, RecA; HET: PG4, PGE, GOL, ADP; 2.507A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
PVCunit4_16 plu1652 PLT_01681 3FM2 3FM2_B 41.1 16 0.00028 28.0 >3FM2_B Uncharacterized protein, distantly related to; STRUCTURAL GENOMICS, JOINT CENTER FOR; HET: ACT; 1.8A {Anabaena variabilis ATCC 29413}
PVCunit4_17 plu1651 PLT_01680 2I88 2I88_A 56.2 6.4 0.00011 35.4 >2I88_A Colicin-E1; protein-membrane interactions, toxin-membrane interactions, toxin; 2.5A {Escherichia coli}
PVCpnf_1 PAU_03353 PAU_03392 5IV5 5IV5_F 99.4 1.6e-16 2.8e-21 108.8 >5IV5_FH Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCpnf_2 PAU_03352 PAU_03391 3J9Q 3J9Q_C 100.0 3.4e-34 6e-39 243.2 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCpnf_3 PAU_03351 PAU_03390 3J9Q 3J9Q_C 99.9 8.6e-32 1.5e-36 234.4 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCpnf_4 PAU_03350 PAU_03389 3J9Q 3J9Q_C 99.9 9e-28 1.6e-32 207.6 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCpnf_5 PAU_03349 PAU_03388 5IV5 5IV5_D 99.0 2.3e-13 4e-18 93.6 >5IV5_DF Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCpnf_6 PAU_03348 PAU_03387 3SLS 3SLS_B 75.1 1.4 2.5e-05 26.7 >3SLS_B Dual specificity mitogen-activated protein kinase; Serine-threonine kinase, Signalling, TRANSFERASE-TRANSFERASE INHIBITOR; HET: 77D, ANP; 2.3A {Homo sapiens}
PVCpnf_7 PAU_03347 PAU_03386 3KXY 3KXY_V 43.4 14.0 0.00024 28.1 >3KXY_V Exoenzyme S synthesis protein C; type-three secretion system, TTSS, T3SS; 2.804A {Pseudomonas aeruginosa}
PVCpnf_8 PAU_03346 PAU_03385 2P5Z 2P5Z_X 99.9 3.2e-28 5.7e-33 219.2 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVCpnf_9 PAU_03345 PAU_03384 2IA7 2IA7_A 99.5 3.4e-18 6e-23 113.3 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVCpnf_10 PAU_03344 PAU_03383 1WEY 1WEY_A 71.0 2.1 3.7e-05 26.9 >1WEY_A calcipressin 1; structural genomics, RRM domain, calcipressin; NMR {Mus musculus} SCOP: d.58.7.1
PVCpnf_11 PAU_03343 PAU_03382 5IV5 5IV5_G 96.4 7.3e-05 1.3e-09 79.3 >5IV5_GE Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCpnf_12 PAU_03342 PAU_03381 5CER 5CER_I 30.8 30 0.00052 35.6 >5CER_I Bd0816 (E.C.3.4.16.4), Bd3460; transpeptidase and ankyrin repeat, immune; 2.48A {Bdellovibrio bacteriovorus HD100}
PVCpnf_13 PAU_03341 PAU_03380 1PDI 1PDI_N 93.7 0.011 2e-07 55.7 >1PDI_N Short tail fiber protein; STRUCTURAL PROTEIN; 12.0A {Enterobacteria phage T4} SCOP: i.19.1.1
PVCpnf_14 PAU_03340 PAU_03379 3C9P 3C9P_A 28.5 35.0 0.00061 31.5 >3C9P_A Uncharacterized protein SP1917; Streptococcus pneumoniae, SP_1917, Structural Genomics; 1.96A {Streptococcus pneumoniae}
PVCpnf_15 PAU_03339 PAU_03378 5E7P 5E7P_B 99.7 5.9e-22 1e-26 196.1 >5E7P_B Cell division control protein Cdc48; AAA ATPase, M. Smegmatic, RecA; HET: PG4, PGE, GOL, ADP; 2.507A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
PVCpnf_16 PAU_03338 PAU_03377 3UV1 3UV1_A 22.7 52 0.00092 25.1 >3UV1_A Der f 7 allergen; Super-roll, ALLERGEN; HET: MSE; 2.0A {Dermatophagoides farinae}
PVCpnf_17 PAU_03337 PAU_03376 2COL 2COL_A 96.8 1.5e-05 2.6e-10 74.8 >2COL_A Bifunctional hemolysin-adenylate cyclase (E.C.4.6.1.1); LYASE, Calcium binding, LYASE-METAL BINDING; 2.2A {Bordetella pertussis}
PVCpnf_18 PAU_03336 PAU_03375 4TNO 4TNO_A 69.5 2.4 4.2e-05 24.4 >4TNO_A HYPOTHETICAL PROTEIN PF1117; SULFUR SAD, hydrolase; 2.14A {Pyrococcus furiosus}
PVCpnf_19 PAU_03334 PAU_03374 3L3U 3L3U_A 70.4 2.2 3.9e-05 22.6 >3L3U_A POL polyprotein; DNA INTEGRATION, AIDS, INTEGRASE, ENDONUCLEASE; HET: SO4; 1.4A {Human immunodeficiency virus 1}
PVCpnf_20 PAU_03333 PAU_03373 3FXQ 3FXQ_B 99.7 5.5e-21 9.7e-26 122.1 >3FXQ_B LysR type regulator of tsaMBCD; LysR-type, transcriptional regulator, LTTR, TsaR; 1.85A {Comamonas testosteroni}
PVCpnf_21 PAU_03332 PAU_03372 1HQ0 1HQ0_A 100.0 2.4e-54 4.1e-59 390.4 >1HQ0_A CYTOTOXIC NECROTIZING FACTOR 1; BETA SANDWICH, RHO DEAMIDASE, RHO; HET: PO4; 1.83A {Escherichia coli} SCOP: d.194.1.1
PVCpnf_22 PAU_03331 PAU_03371 1JEO 1JEO_A 57.2 6.0 0.0001 23.6 >1JEO_A HYPOTHETICAL PROTEIN MJ1247; RuMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase; HET: CIT; 2.0A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
PVCpnf_23 PAU_03330 PAU_03370 1XJU 1XJU_A 100.0 4.1e-40 7.2e-45 226.9 >1XJU_A Lysozyme (E.C.3.2.1.17); secreted inactive conformation, HYDROLASE; HET: SO4; 1.07A {Enterobacteria phage P1} SCOP: d.2.1.3
PVCpnf_24 PAU_03329 PAU_03369 3VP9 3VP9_A 52.5 8.1 0.00014 29.8 >3VP9_A General transcriptional corepressor TUP1; Four helix bundle, TRANSCRIPTION; HET: DIO; 1.799A {Saccharomyces cerevisiae}
PVCcif_1 PAU_01993 PAU_01961 5IV5 5IV5_D 99.6 7.6e-19 1.3e-23 120.3 >5IV5_DF Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCcif_2 PAU_01994 PAU_01962 3J9Q 3J9Q_C 99.9 3.1e-31 5.4e-36 225.9 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCcif_3 PAU_01995 PAU_01963 3J9Q 3J9Q_C 99.9 3.6e-28 6.4e-33 214.6 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCcif_4 PAU_01996 PAU_01964 3J9Q 3J9Q_C 99.9 9.7e-29 1.7e-33 212.9 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCcif_5 PAU_01997 PAU_01965 5IV5 5IV5_B 99.0 3.7e-13 6.4e-18 92.6 >5IV5_BB Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCcif_6 PAU_01998 PAU_01966 1IV8 1IV8_A 42.6 15 0.00026 29.0 >1IV8_A MALTOOLIGOSYL TREHALOSE SYNTHASE(E.C.5.4.99.15); TREHALOSE SYNTHASE, BETA ALPHA BARREL; 1.9A {Sulfolobus acidocaldarius} SCOP: b.71.1.1, c.1.8.1
PVCcif_7 PAU_01999 PAU_01967 5A3A 5A3A_A 62.8 4.1 7.1e-05 33.0 >5A3A_A SIR2 FAMILY PROTEIN (E.C.2.4.2.30); TRANSFERASE, P-RIBOSYLTRANSFERASE, METALLOPROTEIN, NAD-DEPENDENT, LIPOYLATION; HET: EDO, GLY; 1.54A {STREPTOCOCCUS PYOGENES}
PVCcif_8 PAU_02000 PAU_01968 2P5Z 2P5Z_X 99.9 3.4e-29 5.9e-34 225.3 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVCcif_9 PAU_02001 PAU_01969 2IA7 2IA7_A 99.6 5.8e-20 1e-24 122.6 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVCcif_10 PAU_02002 PAU_01970 1JWB 1JWB_B 40.6 16 0.00029 24.8 >1JWB_B MOLYBDOPTERIN BIOSYNTHESIS MOEB PROTEIN, MOLYBDOPTERIN; MoeB: modified Rossmann fold ; HET: AMP; 2.1A {Escherichia coli} SCOP: c.111.1.1
PVCcif_11 PAU_02003 PAU_01971 3H2T 3H2T_A 96.3 0.00011 1.9e-09 74.9 >3H2T_A Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVCcif_12 PAU_02004 PAU_01972 4ORL 4ORL_A 57.3 5.9 0.0001 36.3 >4ORL_A Uncharacterized protein; PF16022 family, DUF4783, Structural Genomics; 1.4A {Bacteroides ovatus}
PVCcif_13 PAU_02005 PAU_01973 2FKK 2FKK_A 97.0 5e-06 8.7e-11 69.7 >2FKK_A Baseplate structural protein Gp10; Bacteriophage T4 Baseplate ; HET: EDO; 1.2A {Enterobacteria phage T4}
PVCcif_14 PAU_02006 PAU_01974 3KDE 3KDE_C 17.7 79.0 0.0014 23.2 >3KDE_C PROTEIN/DNA Complex; THAP domain, DNA-binding domain, zinc-finger; 1.74A {Drosophila melanogaster}
PVCcif_15 PAU_02007 PAU_01975 5E7P 5E7P_B 99.7 3.2e-22 5.6e-27 197.7 >5E7P_B Cell division control protein Cdc48; AAA ATPase, M. Smegmatic, RecA; HET: PG4, PGE, GOL, ADP; 2.507A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
PVCcif_16 PAU_02008 PAU_01976 4V9F 4V9F_6 51.5 8.5 0.00015 27.2 >4V9F_6 PROTEIN/RNA Complex; 50S ribosomal subunit, ribonucleoprotein, ribosomal; HET: CL, 1MA, NA, OMG, OMU, MG, PSU, UR3, ACY; 2.404A {Haloarcula marismortui}
PVCcif_17 PAU_02009 PAU_01977 4FBJ 4FBJ_A 100.0 2e-98 3e-103 664.7 >4FBJ_A Hypothetical protein, NEDD8; Effector-Host target complex, Glutamine deamidase; 1.6A {Photorhabdus luminescens subsp. laumondii}
PVCcif_18 PAU_02010 PAU_01978 1IRG 1IRG_A 35.8 22 0.00038 28.6 >1IRG_A INTERFERON REGULATORY FACTOR-2; TRANSCRIPTION REGULATION, WINGED HELIX-TURN-HELIX; NMR {Mus musculus} SCOP: a.4.5.23
PVCcif_19 PAU_02011 PAU_01979 4JXJ 4JXJ_A 43.6 14 0.00024 30.9 >4JXJ_A Ribosomal RNA small subunit methyltransferase; Structural Genomics, NIAID, National Institute; HET: IOD; 2.0A {Rickettsia bellii}
PVCcif_20 PAU_02012 PAU_01980 3IKM 3IKM_A 30.2 31 0.00054 33.8 >3IKM_A DNA polymerase subunit gamma-1 (E.C.2.7.7.7); Human mitochondrial DNA polymerase, Disease; 3.24A {Homo sapiens}
PVClumt_0 PAU_02249 PAU_02208 6EKT 6EKT_A 99.7 6.2e-21 1.1e-25 179.4 >6EKT_A p-47 protein; lipid binding, LIPID BINDING PROTEIN; 1.75A {Clostridium botulinum (strain Kyoto / Type A2)}
PVClumt_1 PAU_02247 PAU_02206 5IV5 5IV5_D 99.4 6.2e-17 1.1e-21 110.9 >5IV5_DE Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVClumt_2 PAU_02246 PAU_02205 3J9Q 3J9Q_C 99.9 5.2e-29 9.1e-34 218.0 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVClumt_4 PAU_02245 PAU_02204 3J9Q 3J9Q_C 99.8 9e-26 1.6e-30 194.0 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVClumt_5 PAU_02244 PAU_02203 5IV5 5IV5_R 99.1 1e-13 1.8e-18 95.7 >5IV5_R Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVClumt_6 PAU_02243 PAU_02202 1USD 1USD_A 70.0 2.3 4.1e-05 24.3 >1USD_A VASODILATOR-STIMULATED PHOSPHOPROTEIN; SIGNALING PROTEIN, PHOSPHORYLATION, ACTIN-BINDING, KINASE; 1.7A {HOMO SAPIENS} SCOP: h.1.29.1
PVClumt_7 PAU_02242 PAU_02201 3D1B 3D1B_A 28.0 36.0 0.00063 28.4 >3D1B_A RNA-induced transcriptional silencing complex protein; all alpha motif, RITS complex; 1.7A {Schizosaccharomyces pombe}
PVClumt_8 PAU_02241 PAU_02200 2P5Z 2P5Z_X 99.8 1.6e-23 2.8e-28 188.1 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVClumt_9 PAU_02240 PAU_02199 2IA7 2IA7_A 99.5 6.8e-18 1.2e-22 112.8 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVClumt_10 afp10 PAU_02198 4JIW 4JIW_L 68.9 2.6 4.5e-05 26.9 >4JIW_L Tail-associated lysozyme (E.C.3.2.1.17), Putative uncharacterized; PAAR-repeat motif, membrane piercing, type; 3.402A {Enterobacteria phage T4}
PVClumt_11 afp11 PAU_02197 3H2T 3H2T_A 95.8 0.0004 7.1e-09 68.0 >3H2T_A Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVClumt_12 PAU_02237 PAU_02196 1FHO 1FHO_A 28.4 35 0.00061 27.2 >1FHO_A UNC-89; Pleckstrin Homology domain, electrostatics, muscle; NMR {Caenorhabditis elegans} SCOP: b.55.1.1
PVClumt_13 PAU_02236 PAU_02195 1V1H 1V1H_E 96.0 0.00028 4.9e-09 53.9 >1V1H_E FIBRITIN, FIBER PROTEIN; ADENOVIRUS, CHIMERA, FIBER PROTEIN; 1.9A {HUMAN ADENOVIRUS TYPE 2, BACTERIOPHAGE T4} SCOP: b.83.1.1, h.1.17.1
PVClumt_97 PAU_02235 PAU_02194 6EKT 6EKT_A 99.2 3.1e-15 5.5e-20 147.3 >6EKT_A p-47 protein; lipid binding, LIPID BINDING PROTEIN; 1.75A {Clostridium botulinum (strain Kyoto / Type A2)}
PVClumt_98 PAU_02234 PAU_02193 4AK2 4AK2_A 68.5 2.6 4.6e-05 39.1 >4AK2_A BT_4661; HEPARIN-BINDING PROTEIN, HEPARAN SULPHATE; HET: SGN, IDS; 1.35A {BACTEROIDES THETAIOTAOMICRON}
PVClumt_99 PAU_02233 PAU_02192 4PAC 4PAC_A 17.2 83.0 0.0014 26.6 >4PAC_A histidine phosphotransfer protein 2 from; cytokinin signaling, helical fold, signaling; HET: MES; 2.53A {Arabidopsis thaliana}
PVClumt_15 PAU_02232 PAU_02191 5E7P 5E7P_B 99.7 1.1e-21 1.9e-26 194.4 >5E7P_B Cell division control protein Cdc48; AAA ATPase, M. Smegmatic, RecA; HET: PG4, PGE, GOL, ADP; 2.507A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
PVClumt_16 PAU_02231 PAU_02190 1PDO 1PDO_A 57.1 6.0 0.0001 30.2 >1PDO_A MANNOSE PERMEASE; PHOSPHOENOLPYRUVATE DEPENDENT PHOSPHOTRANSFERASE SYSTEM, PHOSPHOTRANSFERASE; 1.7A {Escherichia coli} SCOP: c.54.1.1
PVClumt_17 PAU_02230 PAU_02189 4MIX 4MIX_A 100.0 3.6e-50 6.3e-55 429.5 >4MIX_A Putative insecticidal toxin (E.C.2.4.1.-); tyrosine glycosylation, UDP-GlcNAc, nucleotide-binding domain; HET: UD1; 1.8A {Photorhabdus asymbiotica subsp. asymbiotica}
PVClopT_1 PAU_02112 PAU_02074 5IV5 5IV5_B 99.4 5.2e-17 9.1e-22 110.8 >5IV5_BB Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVClopT_2 PAU_02111 PAU_02073 3J9Q 3J9Q_C 100.0 7.7e-34 1.3e-38 240.5 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVClopT_4 PAU_02110 PAU_02072 3J9Q 3J9Q_C 99.9 1.2e-30 2.1e-35 224.2 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVClopT_5 PAU_02109 PAU_02071 5IV5 5IV5_D 99.0 4.7e-13 8.2e-18 92.0 >5IV5_DE Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVClopT_6 PAU_02108 PAU_02070 5EUL 5EUL_E 64.4 3.6 6.3e-05 24.0 >5EUL_E SecA, SecY, SecE, AYC08; SecY, SecA, ATPase, channel, PROTEIN; HET: ADP, TBR; 3.7A {Bacillus subtilis (strain 168)}
PVClopT_7 PAU_02107 PAU_02069 2XAC 2XAC_C 38.6 18 0.00032 24.6 >2XAC_C VASCULAR ENDOTHELIAL GROWTH FACTOR B; TRANSFERASE-SIGNALING PROTEIN COMPLEX, ANGIOGENESIS, CYSTEINE-KNOT; 2.71A {HOMO SAPIENS}
PVClopT_8 PAU_02106 PAU_02068 2P5Z 2P5Z_X 99.9 7.7e-31 1.3e-35 235.8 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVClopT_9 PAU_02105 PAU_02067 2IA7 2IA7_A 99.6 5.4e-20 9.5e-25 121.9 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVClopT_10 PAU_02104 PAU_02066 5FMJ 5FMJ_B 50.9 8.9 0.00016 23.4 >5FMJ_B BCL-2-LIKE PROTEIN 1, BAK1 PROTEIN; BCL-XL, BAK, BH3 DOMAIN, APOPTOSIS; HET: EDO; 2.43A {HOMO SAPIENS}
PVClopT_11 PAU_02103 PAU_02065 3H2T 3H2T_A 96.4 8.1e-05 1.4e-09 78.8 >3H2T_A Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVClopT_12 PAU_02102 PAU_02064 1PQX 1PQX_A 38.8 18 0.00032 31.7 >1PQX_A conserved hypothetical protein; ZR18,NMR structure, AUTOSTRUCTURE,SPINS,AUTOASSIGN, Northeast Structural; NMR {Staphylococcus aureus subsp. aureus Mu50} SCOP: d.267.1.1
PVClopT_14 PAU_02101 PAU_02063 2GOM 2GOM_A 21.2 59.0 0.001 26.8 >2GOM_A Fibrinogen-binding protein; three-helix closed bundle with left-hand; 1.25A {Staphylococcus aureus} SCOP: a.7.17.1
PVClopT_15 PAU_02100 PAU_02062 5E7P 5E7P_B 99.7 6.9e-22 1.2e-26 195.4 >5E7P_B Cell division control protein Cdc48; AAA ATPase, M. Smegmatic, RecA; HET: PG4, PGE, GOL, ADP; 2.507A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
PVClopT_16 PAU_02099 PAU_02061 3OIZ 3OIZ_A 23.6 49.0 0.00086 21.8 >3OIZ_A Antisigma-factor antagonist, STAS; PSI-2, Midwest Center for Structural; 1.65A {Rhodobacter sphaeroides}
PVClopT_17 PAU_02098 PAU_02060 2EC5 2EC5_A 100.0 1e-84 1.8e-89 669.9 >2EC5_A Dermonecrotic toxin; Pasteurella multocida toxin, Cys1159Ser mutant; 2.6A {Pasteurella multocida} SCOP: c.150.1.2, d.3.1.17, a.296.1.1
PVClopT_18 PAU_02097 PAU_02059 5O9Z 5O9Z_Q 64.0 3.7 6.6e-05 37.9 >5O9Z_Q Pre-mRNA-processing-splicing factor 8, 116 kDa; Spliceosome, pre-mRNA splicing, macromolecular complex; 4.5A {Homo sapiens}
PVClopT_19 PAU_02096 PAU_02058 1UKF 1UKF_A 99.8 9.4e-25 1.6e-29 182.9 >1UKF_A Avirulence protein AVRPPH3; AvrPphB, AvrPph3, Avirulence, Hypersensitive Response; 1.35A {Pseudomonas syringae pv. phaseolicola} SCOP: d.3.1.10
PVClopT_20 PAU_02095 PAU_02057 4IGL 4IGL_D 100.0 1.9e-55 3.3e-60 420.2 >4IGL_D YenB, YenC2; Beta-Propeller, RHS, toxin complex, Toxin; HET: GOL; 2.49A {Yersinia}
PVCunit1_1 afp1 PAU_02775 5IV5 5IV5_B 99.5 1.8e-17 3.2e-22 113.5 >5IV5_BB Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCunit1_2 afp2 PAU_02776 3J9Q 3J9Q_C 100.0 1.1e-35 1.9e-40 252.7 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit1_3 afp3 PAU_02777 3J9Q 3J9Q_C 100.0 9.7e-35 1.7e-39 254.8 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit1_4 afp4 PAU_02778 3J9Q 3J9Q_C 99.9 3.8e-29 6.7e-34 215.6 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit1_5 afp5 PAU_02779 5IV5 5IV5_I 99.1 1.1e-13 1.9e-18 95.1 >5IV5_IB Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCunit1_6 afp7 PAU_02780 4E71 4E71_A 47.5 11 0.00019 23.5 >4E71_A Plexin-B2; plexin, transmembrane, signaling, rbd, Structural; 2.26A {Homo sapiens}
PVCunit1_7 afp7 PAU_02781 5A3A 5A3A_A 59.7 5.1 8.8e-05 32.5 >5A3A_A SIR2 FAMILY PROTEIN (E.C.2.4.2.30); TRANSFERASE, P-RIBOSYLTRANSFERASE, METALLOPROTEIN, NAD-DEPENDENT, LIPOYLATION; HET: EDO, GLY; 1.54A {STREPTOCOCCUS PYOGENES}
PVCunit1_8 PAU_02796 PAU_02782 2P5Z 2P5Z_X 99.9 2.7e-32 4.7e-37 245.2 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVCunit1_9 afp9 PAU_02783 2IA7 2IA7_A 99.6 4.5e-19 7.8e-24 118.4 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVCunit1_10 afp10 PAU_02784 1YOV 1YOV_C 43.2 14 0.00025 30.9 >1YOV_C Amyloid protein-binding protein 1, Ubiquitin-activating; ubiquitin, NEDD8, E1, APPBP1, UBA3; 2.6A {Homo sapiens} SCOP: c.111.1.2
PVCunit1_11 afp11 PAU_02785 3H2T 3H2T_A 96.4 6.9e-05 1.2e-09 76.4 >3H2T_A Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVCunit1_12 afp12 PAU_02786 2JY8 2JY8_A 22.9 52.0 0.00091 28.5 >2JY8_A Ubiquitin-binding protein p62; ubiquitin binding, ubiquitin associated domain; NMR {Homo sapiens} SCOP: a.5.2.1
PVCunit1_13 PAU_02801 PAU_02787 2FKK 2FKK_A 97.8 5e-08 8.7e-13 85.0 >2FKK_A Baseplate structural protein Gp10; Bacteriophage T4 Baseplate ; HET: EDO; 1.2A {Enterobacteria phage T4}
PVCunit1_14 orf25 PAU_02788 4I7W 4I7W_A 24.8 45.0 0.00079 30.2 >4I7W_A Dihydrodipicolinate synthase (E.C.4.2.1.52); TIM BARREL, lysine biosynthesis, pyruvate; HET: LYS; 1.3A {Agrobacterium sp.}
PVCunit1_15 PAU_02803 PAU_02789 5E7P 5E7P_B 99.8 6e-24 1.1e-28 210.1 >5E7P_B Cell division control protein Cdc48; AAA ATPase, M. Smegmatic, RecA; HET: PG4, PGE, GOL, ADP; 2.507A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
PVCunit1_16 PAU_02804 PAU_02790 3FM2 3FM2_B 24.5 46.0 0.0008 25.5 >3FM2_B Uncharacterized protein, distantly related to; STRUCTURAL GENOMICS, JOINT CENTER FOR; HET: ACT; 1.8A {Anabaena variabilis ATCC 29413}
PVCunit1_17 hrpN PAU_02791 2I88 2I88_A 79.9 0.82 1.4e-05 40.9 >2I88_A Colicin-E1; protein-membrane interactions, toxin-membrane interactions, toxin; 2.5A {Escherichia coli}
PVCunit1_18 PAU_02806 PAU_02792 5SVA 5SVA_V 36.3 21 0.00037 31.7 >5SVA_V DNA-directed RNA polymerase II subunit; Transcriptional Initiation, Mediator, Pre-Initiation Complex; 15.3A {Saccharomyces cerevisiae}
PVCunit1_19 PAU_02807 PAU_02793 5E24 5E24_D 26.0 41.0 0.00072 24.2 >5E24_D Maltose-binding periplasmic protein, Protein hairless; Notch Signaling, Suppressor of Hairless; HET: EDO, MTT; 2.14A {Escherichia coli O157:H7}
PVCunit1_20 PAU_02808 PAU_02794 2XR4 2XR4_B 100.0 2.1e-34 3.8e-39 230.8 >2XR4_B LECTIN; SUGAR BINDING PROTEIN, LUNG, PATHOGEN; HET: SO4; 1.9A {BURKHOLDERIA CENOCEPACIA}
PVCpnf_1 PAK_3544 PAK_03203 5IV5 5IV5_D 99.4 4.6e-17 8e-22 111.5 >5IV5_DE Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCpnf_2 PAK_3543 PAK_03202 3J9Q 3J9Q_C 100.0 5.5e-34 9.6e-39 241.9 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCpnf_3 PAK_3542 PAK_03201 3J9Q 3J9Q_C 99.9 4.4e-31 7.7e-36 230.3 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCpnf_4 PAK_3541 PAK_03200 3J9Q 3J9Q_C 99.9 2.2e-28 3.9e-33 210.9 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCpnf_5 PAK_3540 PAK_03199 5IV5 5IV5_B 99.0 2.1e-13 3.6e-18 93.8 >5IV5_BC Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCpnf_6 PAK_3539 PAK_03198 3SLS 3SLS_B 75.1 1.4 2.5e-05 26.7 >3SLS_B Dual specificity mitogen-activated protein kinase; Serine-threonine kinase, Signalling, TRANSFERASE-TRANSFERASE INHIBITOR; HET: 77D, ANP; 2.3A {Homo sapiens}
PVCpnf_7 PAK_3538 PAK_03197 4LID 4LID_B 25.8 42.0 0.00073 27.5 >4LID_B A-100; VIRAL PROTEIN, Hyperthermophilic viral protein; 3.0A {Sulfolobus spindle-shaped virus 1}
PVCpnf_8 PAK_3537 PAK_03196 2P5Z 2P5Z_X 99.9 2.1e-28 3.7e-33 220.4 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVCpnf_9 PAK_3536 PAK_03195 2IA7 2IA7_A 99.5 8.1e-18 1.4e-22 111.5 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVCpnf_10 PAK_3535 PAK_03194 1UKF 1UKF_A 56.9 6.1 0.00011 30.5 >1UKF_A Avirulence protein AVRPPH3; AvrPphB, AvrPph3, Avirulence, Hypersensitive Response; 1.35A {Pseudomonas syringae pv. phaseolicola} SCOP: d.3.1.10
PVCpnf_11 PAK_3534 PAK_03193 3H2T 3H2T_A 96.2 0.00013 2.3e-09 72.7 >3H2T_A Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVCpnf_12 PAK_3533 PAK_03192 1PYA 1PYA_A 28.2 36.0 0.00062 31.3 >1PYA_A PYRUVOYL-DEPENDENT HISTIDINE DECARBOXYLASE (L-HISTIDINE CARBOXYLASE); CARBOXY-LYASE; 2.5A {Lactobacillus sp. 30A} SCOP: d.155.1.1
PVCpnf_13 PAK_3532 PAK_03191 2FKK 2FKK_A 96.9 8.3e-06 1.4e-10 71.8 >2FKK_A Baseplate structural protein Gp10; Bacteriophage T4 Baseplate ; HET: EDO; 1.2A {Enterobacteria phage T4}
PVCpnf_14 PAK_3531 PAK_03190 5JY5 5JY5_B 26.3 40.0 0.00071 23.5 >5JY5_B Thioredoxin; Thioredoxin 1 Cryptococcus neoformans X-ray; HET: GOL, SO4; 1.8A {Cryptococcus neoformans var. grubii serotype A}
PVCpnf_15 PAK_3530 PAK_03189 5E7P 5E7P_B 99.7 2.6e-22 4.5e-27 198.6 >5E7P_B Cell division control protein Cdc48; AAA ATPase, M. Smegmatic, RecA; HET: PG4, PGE, GOL, ADP; 2.507A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
PVCpnf_16 PAK_3529 PAK_03188 3T5S 3T5S_A 34.5 24 0.00041 26.1 >3T5S_A Macrophage migration inhibitory factor; SSGCID, Structural Genomics, Seattle Structural; 2.3A {Giardia lamblia}
PVCpnf_17 PAK_3527 PAK_03187 4WYQ 4WYQ_B 44.5 13 0.00023 18.2 >4WYQ_B Dicer (E.C.3.1.26.3), Trans-activation-responsive RNA-binding protein; RNA interference, microRNA, dsRBP, dsRBD; 3.2A {Homo sapiens}
PVCpnf_18 PAK_3526 PAK_03186 3SZP 3SZP_A 99.7 3.4e-21 5.9e-26 120.2 >3SZP_A Transcriptional regulator, LysR family; winged helix-turn helix, DNA-binding, transcription; 2.202A {Vibrio cholerae}
PVCpnf_19 PAK_3525 PAK_03185 4MIX 4MIX_A 99.9 8.9e-32 1.6e-36 228.1 >4MIX_A Putative insecticidal toxin (E.C.2.4.1.-); tyrosine glycosylation, UDP-GlcNAc, nucleotide-binding domain; HET: UD1; 1.8A {Photorhabdus asymbiotica subsp. asymbiotica}
PVCpnf_20 PAK_3524 PAK_03184 4LDE 4LDE_A 99.4 2e-16 3.5e-21 97.6 >4LDE_A Lysozyme, Beta-2 adrenergic receptor (E.C.3.2.1.17); G protein coupled receptor, MEMBRANE; HET: P0G, 1WV; 2.79A {Enterobacteria phage T4, Homo sapiens}
PVCpnf_21 PAK_3523 PAK_03183 3HDF 3HDF_B 99.7 1.5e-21 2.7e-26 119.9 >3HDF_B Lysozyme (E.C.3.2.1.17); lysozyme-like, Antimicrobial, Bacteriolytic enzyme, Glycosidase; HET: GOL, NO3; 1.7A {Enterobacteria phage P21}
PVCpnf_22 PAK_3522 PAK_03182 5KKV 5KKV_A 62.7 4.1 7.2e-05 26.0 >5KKV_A GCN4-p2L; GCN4 coiled-coil, PROTEIN FIBRIL; 1.9A {N/A}
PVCpnf_23 PAK_3521 PAK_03181 1XJU 1XJU_B 100.0 1.9e-40 3.4e-45 228.5 >1XJU_B Lysozyme (E.C.3.2.1.17); secreted inactive conformation, HYDROLASE; HET: SO4; 1.07A {Enterobacteria phage P1} SCOP: d.2.1.3
PVCcif_1 PAK_1969 PAK_01787 5IV5 5IV5_I 99.6 1.1e-18 1.8e-23 119.6 >5IV5_IA Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCcif_2 PAK_1970 PAK_01788 3J9Q 3J9Q_C 99.9 4.7e-32 8.3e-37 231.0 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCcif_3 PAK_1971 PAK_01789 3J9Q 3J9Q_C 99.9 9.9e-30 1.7e-34 224.5 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCcif_4 PAK_1972 PAK_01790 3J9Q 3J9Q_C 99.9 7.7e-29 1.4e-33 213.5 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCcif_5 PAK_1973 PAK_01791 5IV5 5IV5_I 98.9 6.2e-13 1.1e-17 91.4 >5IV5_IB Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCcif_6 PAK_1974 PAK_01792 3RJR 3RJR_C 45.6 12 0.00021 24.9 >3RJR_C Transforming growth factor beta-1; TGF beta, activation, integrin, Cytokine; HET: NAG; 3.05A {Sus scrofa}
PVCcif_7 PAK_1975 PAK_01793 5A3A 5A3A_A 66.2 3.2 5.6e-05 33.6 >5A3A_A SIR2 FAMILY PROTEIN (E.C.2.4.2.30); TRANSFERASE, P-RIBOSYLTRANSFERASE, METALLOPROTEIN, NAD-DEPENDENT, LIPOYLATION; HET: EDO, GLY; 1.54A {STREPTOCOCCUS PYOGENES}
PVCcif_8 PAK_1976 PAK_01794 2P5Z 2P5Z_X 99.9 3.5e-30 6.1e-35 231.6 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVCcif_9 PAK_1977 PAK_01795 2IA7 2IA7_A 99.6 1.8e-19 3.1e-24 120.3 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVCcif_10 PAK_1978 PAK_01796 5C2Y 5C2Y_A 35.5 22 0.00039 27.4 >5C2Y_A RNA polymerase II subunit B1; regulator of transcription, zinc finger; HET: SO4; 2.6A {Saccharomyces cerevisiae}
PVCcif_11 PAK_1979 PAK_01797 3H2T 3H2T_A 96.3 9.7e-05 1.7e-09 75.1 >3H2T_A Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVCcif_12 PAK_1980 PAK_01798 2LG1 2LG1_A 63.2 4.0 6.9e-05 34.2 >2LG1_A A-kinase anchor protein 13; METAL BINDING PROTEIN; NMR {Homo sapiens}
PVCcif_13 PAK_1981 PAK_01799 2FKK 2FKK_A 97.3 1.6e-06 2.8e-11 72.6 >2FKK_A Baseplate structural protein Gp10; Bacteriophage T4 Baseplate ; HET: EDO; 1.2A {Enterobacteria phage T4}
PVCcif_14 PAK_1982 PAK_01800 3Q1C 3Q1C_A 19.4 68.0 0.0012 34.2 >3Q1C_A LEE-encoded effector EspG; VirA fold, virulence factor, PAK; 1.596A {Escherichia coli O127:H6}
PVCcif_15 PAK_1983 PAK_01801 5E7P 5E7P_B 99.7 1.4e-20 2.5e-25 186.3 >5E7P_B Cell division control protein Cdc48; AAA ATPase, M. Smegmatic, RecA; HET: PG4, PGE, GOL, ADP; 2.507A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
PVCcif_16 PAK_1984 PAK_01802 3FXD 3FXD_D 34.1 24.0 0.00043 28.1 >3FXD_D Protein IcmQ, Protein IcmR; 4 helix bundle, helix-turn-helix, UNKNOWN; 2.1A {Legionella pneumophila}
PVCcif_17 PAK_1985 PAK_01803 4FBJ 4FBJ_A 100.0 8.4e-93 1.5e-97 629.0 >4FBJ_A Hypothetical protein, NEDD8; Effector-Host target complex, Glutamine deamidase; 1.6A {Photorhabdus luminescens subsp. laumondii}
PVCcif_18 PAK_1986 PAK_01804 2I71 2I71_A 28.5 35 0.00061 31.7 >2I71_A Hypothetical protein; Structural Genomics, APC6294, Conserved hypothetical; 1.7A {Sulfolobus solfataricus} SCOP: e.72.1.1
PVCcif_19 PAK_1987 PAK_01805 5EWY 5EWY_A 97.4 8.2e-07 1.4e-11 73.9 >5EWY_A Putative ADP-Ribosyltransferase Scabin (E.C.2.4.2.31); transferase, inhibitor, TRANSFERASE-TRANSFERASE INHIBITOR complex; HET: 5TQ; 1.4A {Streptomyces scabiei 87.22}
PVCcif_20 PAK_1988 PAK_01806 5NB9 5NB9_A 61.0 4.6 8.1e-05 32.3 >5NB9_A RNA chaperone ProQ; FinO, ProQ, RNA, chaperone; NMR {Escherichia coli O45:K1 (strain S88 / ExPEC)}
PVClumt_0 PAK_2217 PAK_02015 6EKT 6EKT_A 99.6 8.2e-20 1.4e-24 171.8 >6EKT_A p-47 protein; lipid binding, LIPID BINDING PROTEIN; 1.75A {Clostridium botulinum (strain Kyoto / Type A2)}
PVClumt_1 PAK_2216 PAK_02014 5IV5 5IV5_I 99.4 5.7e-17 1e-21 111.1 >5IV5_IA Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVClumt_2 PAK_2215 PAK_02013 3J9Q 3J9Q_C 99.6 1.1e-18 1.9e-23 149.7 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVClumt_3 PAK_2214 PAK_02012 3J9Q 3J9Q_C 97.8 5.3e-08 9.2e-13 68.7 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVClumt_4 PAK_2213 PAK_02011 3J9Q 3J9Q_C 99.9 2.7e-26 4.7e-31 197.2 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVClumt_5 PAK_2212 PAK_02010 5IV5 5IV5_B 99.2 2e-14 3.5e-19 99.1 >5IV5_BC Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVClumt_6 PAK_2211 PAK_02009 1USD 1USD_A 70.9 2.2 3.8e-05 24.5 >1USD_A VASODILATOR-STIMULATED PHOSPHOPROTEIN; SIGNALING PROTEIN, PHOSPHORYLATION, ACTIN-BINDING, KINASE; 1.7A {HOMO SAPIENS} SCOP: h.1.29.1
PVClumt_7 PAK_2210 PAK_02008 3D1B 3D1B_A 28.2 36.0 0.00062 28.4 >3D1B_A RNA-induced transcriptional silencing complex protein; all alpha motif, RITS complex; 1.7A {Schizosaccharomyces pombe}
PVClumt_8 PAK_2209 PAK_02007 2P5Z 2P5Z_X 99.8 2.3e-23 4e-28 187.1 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVClumt_9 PAK_2208 PAK_02006 2IA7 2IA7_A 99.5 9.7e-18 1.7e-22 112.0 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVClumt_10 PAK_2207 PAK_02005 4JIW 4JIW_L 69.9 2.3 4.1e-05 27.1 >4JIW_L Tail-associated lysozyme (E.C.3.2.1.17), Putative uncharacterized; PAAR-repeat motif, membrane piercing, type; 3.402A {Enterobacteria phage T4}
PVClumt_11 PAK_2206 PAK_02004 5CNZ 5CNZ_B 28.7 34 0.0006 20.1 >5CNZ_B MHC class I antigen, Beta-2-microglobulin; Fish MHC class I, Evolution; 1.74A {Ctenopharyngodon idella}
PVClumt_96 PAK_2205 PAK_02003 3H2T 3H2T_A 94.4 0.0048 8.5e-08 52.9 >3H2T_A Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVClumt_12 PAK_2204 PAK_02002 1FHO 1FHO_A 30.0 31 0.00055 27.4 >1FHO_A UNC-89; Pleckstrin Homology domain, electrostatics, muscle; NMR {Caenorhabditis elegans} SCOP: b.55.1.1
PVClumt_13 PAK_2203 PAK_02001 1V1H 1V1H_E 92.6 0.026 4.5e-07 42.9 >1V1H_E FIBRITIN, FIBER PROTEIN; ADENOVIRUS, CHIMERA, FIBER PROTEIN; 1.9A {HUMAN ADENOVIRUS TYPE 2, BACTERIOPHAGE T4} SCOP: b.83.1.1, h.1.17.1
PVClumt_97 PAK_2202 PAK_02000 6EKT 6EKT_A 99.3 5.8e-16 1e-20 152.5 >6EKT_A p-47 protein; lipid binding, LIPID BINDING PROTEIN; 1.75A {Clostridium botulinum (strain Kyoto / Type A2)}
PVClumt_98 PAK_2201 PAK_01999 4AK2 4AK2_A 68.6 2.6 4.6e-05 39.1 >4AK2_A BT_4661; HEPARIN-BINDING PROTEIN, HEPARAN SULPHATE; HET: SGN, IDS; 1.35A {BACTEROIDES THETAIOTAOMICRON}
PVClumt_99 PAK_2200 PAK_01998 3K8P 3K8P_C 33.4 25.0 0.00044 34.3 >3K8P_C Dsl1, Protein transport protein SEC39; Intracellular trafficking, Dsl1 complex, multisubunit; 2.6A {Kluyveromyces lactis}
PVClumt_15 PAK_2199 PAK_01997 5E7P 5E7P_B 99.7 2.5e-22 4.4e-27 198.9 >5E7P_B Cell division control protein Cdc48; AAA ATPase, M. Smegmatic, RecA; HET: PG4, PGE, GOL, ADP; 2.507A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
PVClumt_16 PAK_2198 PAK_01996 1PDO 1PDO_A 56.8 6.1 0.00011 30.1 >1PDO_A MANNOSE PERMEASE; PHOSPHOENOLPYRUVATE DEPENDENT PHOSPHOTRANSFERASE SYSTEM, PHOSPHOTRANSFERASE; 1.7A {Escherichia coli} SCOP: c.54.1.1
PVClumt_17 PAK_2197 PAK_01995 1WRD 1WRD_A 44.0 13.0 0.00023 33.0 >1WRD_A Target of Myb protein 1/Ubiquitin; THREE-HELIX BUNDLE, UBIQUITIN-BINDING PROTEIN, PROTEIN; 1.75A {Bos taurus} SCOP: a.7.8.1
PVClumt_18 PAK_2195 PAK_01994 4MIX 4MIX_A 100.0 1.8e-38 3.1e-43 307.8 >4MIX_A Putative insecticidal toxin (E.C.2.4.1.-); tyrosine glycosylation, UDP-GlcNAc, nucleotide-binding domain; HET: UD1; 1.8A {Photorhabdus asymbiotica subsp. asymbiotica}
PVClopT_1 PAK_2092 PAK_01896 5IV5 5IV5_D 99.4 5.5e-17 9.7e-22 110.7 >5IV5_DE Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVClopT_2 PAK_2091 PAK_01895 3J9Q 3J9Q_C 100.0 5.2e-34 9.1e-39 241.6 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVClopT_4 PAK_2090 PAK_01894 3J9Q 3J9Q_C 99.9 7e-29 1.2e-33 213.3 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVClopT_5 PAK_2089 PAK_01893 5IV5 5IV5_S 98.9 8e-13 1.4e-17 90.9 >5IV5_S Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVClopT_6 PAK_2088 PAK_01892 4F6T 4F6T_B 49.6 9.6 0.00017 24.6 >4F6T_B Molybdenum storage protein subunit beta; molybdenum storage, ATP hydrolyzation, hexamer; HET: ATP, 6M0, 8M0; 1.6A {Azotobacter vinelandii}
PVClopT_7 PAK_2087 PAK_01891 2XAC 2XAC_C 65.6 3.3 5.8e-05 28.3 >2XAC_C VASCULAR ENDOTHELIAL GROWTH FACTOR B; TRANSFERASE-SIGNALING PROTEIN COMPLEX, ANGIOGENESIS, CYSTEINE-KNOT; 2.71A {HOMO SAPIENS}
PVClopT_8 PAK_2086 PAK_01890 2P5Z 2P5Z_X 99.9 2e-29 3.6e-34 226.7 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVClopT_9 PAK_2085 PAK_01889 2IA7 2IA7_A 99.6 3.5e-20 6.1e-25 121.3 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVClopT_10 PAK_2084 PAK_01888 3OJO 3OJO_B 65.0 3.5 6.1e-05 32.9 >3OJO_B Cap5O; Rossmann fold, complex with cofactor; HET: PDC, NAD; 2.5A {Staphylococcus aureus}
PVClopT_11 PAK_2083 PAK_01887 3H2T 3H2T_A 96.0 0.00025 4.3e-09 75.2 >3H2T_A Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVClopT_12 PAK_2082 PAK_01886 2FFM 2FFM_A 35.9 22 0.00038 31.3 >2FFM_A SAV1430; alpha-beta protein., Structural Genomics, PSI; 2.51A {Staphylococcus aureus subsp. aureus Mu50} SCOP: d.267.1.1
PVClopT_14 PAK_2081 PAK_01885 1Z8U 1Z8U_C 28.5 35.0 0.00061 30.2 >1Z8U_C Alpha-hemoglobin stabilizing protein, Hemoglobin alpha; alpha haemoglobin, AHSP, oxidation, interaction; HET: HEM; 2.4A {Homo sapiens} SCOP: a.7.11.1
PVClopT_15 PAK_2080 PAK_01884 5E7P 5E7P_A 99.7 6.9e-22 1.2e-26 195.4 >5E7P_A Cell division control protein Cdc48; AAA ATPase, M. Smegmatic, RecA; HET: PGE, GOL, ADP, PG4; 2.507A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
PVClopT_16 PAK_2079 PAK_01883 4X8K 4X8K_B 32.3 27.0 0.00048 28.0 >4X8K_B Sigma A Domain 2, RbpA; Transcription activator, Sigma factor; HET: SO4, EDO; 2.202A {Mycobacterium tuberculosis}
PVClopT_17 PAK_2078 PAK_01882 3WYG 3WYG_D 35.4 23 0.00039 23.6 >3WYG_D Gsp1p, Exportin-1, cAMP-dependent protein kinase; HEAT REPEAT, NUCLEAR EXPORT, GTP-BINDING; HET: GTP; 2.15A {Saccharomyces cerevisiae AWRI796}
PVClopT_18 PAK_2077 PAK_01881 1UKF 1UKF_A 99.8 2e-23 3.5e-28 175.0 >1UKF_A Avirulence protein AVRPPH3; AvrPphB, AvrPph3, Avirulence, Hypersensitive Response; 1.35A {Pseudomonas syringae pv. phaseolicola} SCOP: d.3.1.10
PVClopT_19 PAK_2075 PAK_01880 1T3C 1T3C_B 96.2 0.00014 2.4e-09 81.2 >1T3C_B neurotoxin type E (E.C.3.4.24.69); Clostridium botulinum, catalytic domain, E212Q; 1.9A {Clostridium botulinum} SCOP: d.92.1.7
PVCunit1_1 PAK_2876 PAK_02606 5IV5 5IV5_B 99.5 1.5e-17 2.6e-22 113.9 >5IV5_BC Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCunit1_2 PAK_2877 PAK_02607 3J9Q 3J9Q_C 100.0 1.8e-33 3.1e-38 239.1 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit1_3 PAK_2878 PAK_02608 3J9Q 3J9Q_C 100.0 4e-34 6.9e-39 250.4 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit1_4 PAK_2879 PAK_02609 3J9Q 3J9Q_C 99.9 3.7e-29 6.5e-34 215.6 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit1_5 PAK_2880 PAK_02610 5W5F 5W5F_M 99.0 1.8e-13 3.1e-18 94.1 >5W5F_M Tail tube protein gp19; T4 tail tube, dose limit;{Enterobacteria phage T4 sensu lato}
PVCunit1_6 PAK_2881 PAK_02611 5T87 5T87_G 77.8 1.1 1.9e-05 28.5 >5T87_G CdiI immunity protein, CdiA toxin; Contact-dependent growth inhibition, toxin, antitoxin; HET: MSE; 2.4A {Cupriavidus taiwanensis (strain DSM 17343 / BCRC 17206 / CIP 107171 / LMG 19424 / R1)}
PVCunit1_7 PAK_2882 PAK_02612 5A3A 5A3A_A 68.3 2.7 4.7e-05 34.0 >5A3A_A SIR2 FAMILY PROTEIN (E.C.2.4.2.30); TRANSFERASE, P-RIBOSYLTRANSFERASE, METALLOPROTEIN, NAD-DEPENDENT, LIPOYLATION; HET: EDO, GLY; 1.54A {STREPTOCOCCUS PYOGENES}
PVCunit1_8 PAK_2883 PAK_02613 2P5Z 2P5Z_X 99.9 1.4e-31 2.5e-36 240.6 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVCunit1_9 PAK_2884 PAK_02614 2IA7 2IA7_A 99.6 5.8e-19 1e-23 117.9 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVCunit1_10 PAK_2885 PAK_02615 1JW9 1JW9_B 52.0 8.3 0.00015 26.2 >1JW9_B MOLYBDOPTERIN BIOSYNTHESIS MOEB PROTEIN, MOLYBDOPTERIN; MoeB: modified Rossmann fold ; HET: SO4; 1.7A {Escherichia coli} SCOP: c.111.1.1
PVCunit1_11 PAK_2886 PAK_02616 3H2T 3H2T_A 96.4 6.5e-05 1.1e-09 76.5 >3H2T_A Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVCunit1_12 PAK_2887 PAK_02617 3N7C 3N7C_B 30.3 31 0.00054 29.9 >3N7C_B Crystal structure of the C-terminal; Nuclear pore complex, NUP2, Ran-binding; 2.26A {Ashbya gossypii}
PVCunit1_13 PAK_2888 PAK_02618 2FKK 2FKK_A 97.6 2.5e-07 4.4e-12 82.7 >2FKK_A Baseplate structural protein Gp10; Bacteriophage T4 Baseplate ; HET: EDO; 1.2A {Enterobacteria phage T4}
PVCunit1_14 PAK_2889 PAK_02619 4E2I 4E2I_W 30.8 30.0 0.00052 25.8 >4E2I_W Large T antigen, DNA polymerase; replication initiation, Hydrolase-DNA binding complex; HET: ZN; 5.0A {Simian virus 40}
PVCunit1_15 PAK_2890 PAK_02620 5E7P 5E7P_B 99.8 1e-22 1.8e-27 201.3 >5E7P_B Cell division control protein Cdc48; AAA ATPase, M. Smegmatic, RecA; HET: PG4, PGE, GOL, ADP; 2.507A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
PVCunit1_16 PAK_2891 PAK_02621 3GGM 3GGM_A 49.2 9.8 0.00017 23.7 >3GGM_A uncharacterized protein BT9727_2919; Bacillus cereus group., Structural Genomics; 2.0A {Bacillus thuringiensis serovar konkukian}
PVCunit1_17 PAK_2892 PAK_02622 2I88 2I88_A 81.6 0.65 1.1e-05 40.9 >2I88_A Colicin-E1; protein-membrane interactions, toxin-membrane interactions, toxin; 2.5A {Escherichia coli}
PVCunit1_18 PAK_2893 PAK_02623 1T2K 1T2K_A 34.8 23 0.00041 28.4 >1T2K_A Interferon regulatory factor 3/Transcription factor; PROTEIN DNA COMPLEX, transcription, Transcription-DNA; 3.0A {Homo sapiens} SCOP: a.4.5.23
PVCunit1_19 PAK_2894 PAK_02624 2OE3 2OE3_B 67.8 2.8 4.9e-05 27.7 >2OE3_B Thioredoxin-3; ELECTRON TRANSPORT, ALPHA/BETA SANDWICH, oxidized; 1.8A {Saccharomyces cerevisiae}
PVCunit1_20 PAK_2895 PAK_02625 2FKK 2FKK_A 96.3 9.3e-05 1.6e-09 58.2 >2FKK_A Baseplate structural protein Gp10; Bacteriophage T4 Baseplate ; HET: EDO; 1.2A {Enterobacteria phage T4}
PVCunit1_21 PAK_2896 PAK_02626 2XR4 2XR4_B 100.0 2.1e-35 3.7e-40 236.4 >2XR4_B LECTIN; SUGAR BINDING PROTEIN, LUNG, PATHOGEN; HET: SO4; 1.9A {BURKHOLDERIA CENOCEPACIA}
PVCcif_1 plu2531 PLT_02568 5IV5 5IV5_B 99.5 2.8e-18 4.9e-23 117.5 >5IV5_BB Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCcif_2 plu2530 PLT_02567 3J9Q 3J9Q_C 99.9 1.6e-31 2.8e-36 227.6 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCcif_3 plu2529 PLT_02566 3J9Q 3J9Q_C 100.0 2.8e-35 4.9e-40 258.0 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCcif_4 plu2528 PLT_02565 3J9Q 3J9Q_C 99.9 1.6e-28 2.7e-33 211.6 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCcif_5 plu2527 PLT_02564 5IV5 5IV5_I 99.0 2.1e-13 3.6e-18 93.8 >5IV5_IB Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCcif_6 plu2526 PLT_02563 1USE 1USE_A 70.0 2.3 4.1e-05 24.3 >1USE_A VASODILATOR-STIMULATED PHOSPHOPROTEIN; SIGNALING PROTEIN,, SIGNALING PROTEIN; 1.3A {HOMO SAPIENS} SCOP: h.1.29.1
PVCcif_7 plu2525 PLT_02562 2XAC 2XAC_C 35.0 23 0.0004 24.2 >2XAC_C VASCULAR ENDOTHELIAL GROWTH FACTOR B; TRANSFERASE-SIGNALING PROTEIN COMPLEX, ANGIOGENESIS, CYSTEINE-KNOT; 2.71A {HOMO SAPIENS}
PVCcif_8 plu2524 PLT_02561 2P5Z 2P5Z_X 99.9 4.3e-29 7.6e-34 224.6 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVCcif_9 plu2523 PLT_02560 2IA7 2IA7_A 99.7 3.3e-21 5.8e-26 127.4 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVCcif_10 plu2522 PLT_02559 4JIW 4JIW_L 63.7 3.8 6.7e-05 26.0 >4JIW_L Tail-associated lysozyme (E.C.3.2.1.17), Putative uncharacterized; PAAR-repeat motif, membrane piercing, type; 3.402A {Enterobacteria phage T4}
PVCcif_11 plu2521 PLT_02558 3H2T 3H2T_A 96.3 8.9e-05 1.6e-09 75.6 >3H2T_A Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVCcif_12 plu2520 PLT_02557 4D0N 4D0N_B 71.5 2.0 3.6e-05 39.6 >4D0N_B TRANSFORMING PROTEIN RHOA (E.C.3.6.5.2), A-KINASE; CELL CYCLE, AKAP13, LBC, AKAP-LBC; HET: GDP, SO4; 2.1A {HOMO SAPIENS}
PVCcif_13 plu2519 PLT_02556 2FKK 2FKK_A 96.6 3.5e-05 6.2e-10 67.7 >2FKK_A Baseplate structural protein Gp10; Bacteriophage T4 Baseplate ; HET: EDO; 1.2A {Enterobacteria phage T4}
PVCcif_14 plu2518 PLT_02555 5J4U 5J4U_A 47.3 11 0.00019 31.0 >5J4U_A Glutathione transferase family protein; GST, Complex, GSH, TRANSFERASE; HET: GSH; 1.249A {Populus trichocarpa}
PVCcif_15 plu2517 PLT_02554 5E7P 5E7P_A 99.7 2e-22 3.4e-27 199.4 >5E7P_A Cell division control protein Cdc48; AAA ATPase, M. Smegmatic, RecA; HET: PGE, GOL, ADP, PG4; 2.507A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
PVCcif_16 plu2516 PLT_02553 3GGM 3GGM_A 32.5 27 0.00047 22.9 >3GGM_A uncharacterized protein BT9727_2919; Bacillus cereus group., Structural Genomics; 2.0A {Bacillus thuringiensis serovar konkukian}
PVCcif_17 plu2515 PLT_02552 4FBJ 4FBJ_A 100.0 1e-103 2e-108 700.8 >4FBJ_A Hypothetical protein, NEDD8; Effector-Host target complex, Glutamine deamidase; 1.6A {Photorhabdus luminescens subsp. laumondii}
PVCcif_18 plu2514 PLT_02551 1LBU 1LBU_A 36.7 21.0 0.00036 28.1 >1LBU_A MURAMOYL-PENTAPEPTIDE CARBOXYPEPTIDASE; HYDROLASE, NUCLEAR RECEPTOR, CARBOXYPEPTIDASE; 1.8A {Streptomyces albus} SCOP: d.65.1.1, a.20.1.1
PVClopT_1 plu2385 PLT_02424 5IV5 5IV5_D 99.4 3.6e-17 6.3e-22 112.0 >5IV5_DE Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVClopT_2 plu2386 PLT_02425 3J9Q 3J9Q_C 99.9 9.3e-32 1.6e-36 228.6 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVClopT_3 plu2387 PLT_02426 3J9Q 3J9Q_C 99.9 1.5e-32 2.5e-37 238.6 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVClopT_4 plu2388 PLT_02427 3J9Q 3J9Q_C 99.9 8.2e-32 1.4e-36 231.1 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVClopT_5 plu2389 PLT_02428 5IV5 5IV5_R 98.8 3.7e-12 6.5e-17 87.6 >5IV5_R Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVClopT_6 plu2390 PLT_02429 1RH4 1RH4_A 49.4 9.7 0.00017 21.7 >1RH4_A RIGHT-HANDED COILED COIL TETRAMER; DE NOVO DESIGN; HET: IPA; 1.9A {synthetic construct} SCOP: k.17.1.1
PVClopT_7 plu2391 PLT_02430 5A3A 5A3A_A 64.3 3.7 6.4e-05 33.2 >5A3A_A SIR2 FAMILY PROTEIN (E.C.2.4.2.30); TRANSFERASE, P-RIBOSYLTRANSFERASE, METALLOPROTEIN, NAD-DEPENDENT, LIPOYLATION; HET: EDO, GLY; 1.54A {STREPTOCOCCUS PYOGENES}
PVClopT_8 plu2392 PLT_02431 2P5Z 2P5Z_X 99.9 3.4e-32 6e-37 244.6 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVClopT_9 plu2393 PLT_02432 2IA7 2IA7_A 99.7 1.3e-20 2.2e-25 124.9 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVClopT_10 plu2394 PLT_02433 4JIV 4JIV_D 57.1 6.0 0.00011 25.4 >4JIV_D Tail-associated lysozyme (E.C.3.2.1.17), Putative uncharacterized; PAAR-repeat motif, membrane piercing, type; HET: PLM, STE, ELA; 1.903A {Enterobacteria phage T4}
PVClopT_11 plu2395 PLT_02434 3H2T 3H2T_A 96.9 7.5e-06 1.3e-10 86.4 >3H2T_A Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVClopT_12 plu2396 PLT_02435 2JY8 2JY8_A 64.0 3.7 6.6e-05 34.8 >2JY8_A Ubiquitin-binding protein p62; ubiquitin binding, ubiquitin associated domain; NMR {Homo sapiens} SCOP: a.5.2.1
PVClopT_14 plu2397 PLT_02436 5MDX 5MDX_4 30.5 30.0 0.00053 31.3 >5MDX_4 Photosystem II protein D1 (E.C.1.10.3.9); photosynthesis, photosystem II supercomplex, single; HET: HEM, CLA, CHL, PHO;{Arabidopsis thaliana}
PVClopT_15 plu2398 PLT_02437 5E7P 5E7P_A 99.8 5.5e-23 9.6e-28 203.2 >5E7P_A Cell division control protein Cdc48; AAA ATPase, M. Smegmatic, RecA; HET: PGE, GOL, ADP, PG4; 2.507A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
PVClopT_16 plu2399 PLT_02438 4XHF 4XHF_B 29.6 32.0 0.00057 30.5 >4XHF_B NA(+)-TRANSLOCATING NADH-QUINONE REDUCTASE SUBUNIT C; FMN, OXIDOREDUCTASE, COVALENT FLAVINYLATION; HET: FMN; 1.76A {Shewanella oneidensis}
PVClopT_17 plu2400 PLT_02439 2EBF 2EBF_X 100.0 1.4e-88 2.4e-93 698.1 >2EBF_X Dermonecrotic toxin; Pasteurella multocida toxin, Trojan horse-like; HET: TRE; 1.9A {Pasteurella multocida} SCOP: d.3.1.17, c.150.1.2, a.296.1.1
PVClopT_18 plu2401 PLT_02440 1UKF 1UKF_A 99.8 6.8e-24 1.2e-28 177.7 >1UKF_A Avirulence protein AVRPPH3; AvrPphB, AvrPph3, Avirulence, Hypersensitive Response; 1.35A {Pseudomonas syringae pv. phaseolicola} SCOP: d.3.1.10
PVCunit1_1 plu1730 PLT_01758 5IV5 5IV5_D 99.4 1.9e-16 3.3e-21 108.5 >5IV5_DF Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCunit1_2 plu1729 PLT_01757 3J9Q 3J9Q_C 100.0 2.7e-34 4.8e-39 243.7 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit1_3 plu1728 PLT_01756 3J9Q 3J9Q_C 100.0 1.8e-33 3.2e-38 246.4 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit1_4 plu1727 PLT_01755 3J9Q 3J9Q_C 99.9 6.8e-30 1.2e-34 219.6 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit1_5 plu1726 PLT_01754 5IV5 5IV5_B 99.1 7.4e-14 1.3e-18 96.0 >5IV5_BC Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCunit1_6 plu1725 PLT_01753 1USD 1USD_A 46.6 11 0.0002 21.4 >1USD_A VASODILATOR-STIMULATED PHOSPHOPROTEIN; SIGNALING PROTEIN, PHOSPHORYLATION, ACTIN-BINDING, KINASE; 1.7A {HOMO SAPIENS} SCOP: h.1.29.1
PVCunit1_7 plu1724 PLT_01752 5A3A 5A3A_A 43.3 14 0.00024 30.0 >5A3A_A SIR2 FAMILY PROTEIN (E.C.2.4.2.30); TRANSFERASE, P-RIBOSYLTRANSFERASE, METALLOPROTEIN, NAD-DEPENDENT, LIPOYLATION; HET: EDO, GLY; 1.54A {STREPTOCOCCUS PYOGENES}
PVCunit1_8 plu1723 PLT_01751 2P5Z 2P5Z_X 99.9 1.1e-30 2e-35 234.8 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVCunit1_9 plu1722 PLT_01750 5IV7 5IV7_G 99.3 2.9e-15 5.1e-20 106.8 >5IV7_GA Baseplate wedge protein gp6, Baseplate; T4, baseplate, post-attachment, bacteriophage, bacterial; 6.77A {Enterobacteria phage T4}
PVCunit1_10 plu1721 PLT_01749 1I24 1I24_A 40.8 16 0.00028 27.5 >1I24_A SULFOLIPID BIOSYNTHESIS PROTEIN SQD1, NICOTINAMIDE-ADENINE-DINUCLEOTIDE; SDR, SHORT-CHAIN DEHYDROGENASE/REDUCTASE, ROSSMANN FOLD; HET: NAD, UPG, SO4; 1.2A {Arabidopsis thaliana} SCOP: c.2.1.2
PVCunit1_11 plu1720 PLT_01748 3H2T 3H2T_A 95.3 0.0012 2e-08 67.6 >3H2T_A Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVCunit1_12 plu1719 PLT_01747 2FFM 2FFM_A 56.2 6.4 0.00011 34.4 >2FFM_A SAV1430; alpha-beta protein., Structural Genomics, PSI; 2.51A {Staphylococcus aureus subsp. aureus Mu50} SCOP: d.267.1.1
PVCunit1_13 plu1718 PLT_01746 2FKK 2FKK_A 97.3 1.4e-06 2.4e-11 76.8 >2FKK_A Baseplate structural protein Gp10; Bacteriophage T4 Baseplate ; HET: EDO; 1.2A {Enterobacteria phage T4}
PVCunit1_14 plu1717 PLT_01745 2LXT 2LXT_C 12.6 130.0 0.0023 22.7 >2LXT_C CREB-binding protein (E.C.2.3.1.48), Histone-lysine N-methyltransferase; CREB binding protein, mixed-lineage leukemia; NMR {Homo sapiens}
PVCunit1_15 plu1716 PLT_01744 5E7P 5E7P_B 99.7 1.5e-21 2.6e-26 193.2 >5E7P_B Cell division control protein Cdc48; AAA ATPase, M. Smegmatic, RecA; HET: PG4, PGE, GOL, ADP; 2.507A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
PVCunit1_16 plu1715 PLT_01743 3GGM 3GGM_A 48.7 10 0.00018 24.9 >3GGM_A uncharacterized protein BT9727_2919; Bacillus cereus group., Structural Genomics; 2.0A {Bacillus thuringiensis serovar konkukian}
PVCunit1_17 plu1714 PLT_01742 1EB6 1EB6_A 83.9 0.44 7.7e-06 31.5 >1EB6_A NEUTRAL PROTEASE II (E.C.3.4.24.39); METALLOPROTEINASE, NEUTRAL PROTEASE II, HYDROLASE; HET: EDO; 1.0A {ASPERGILLUS ORYZAE} SCOP: d.92.1.12
PVCunit1_18 plu1713 PLT_01741 3IM4 3IM4_C 41.0 16.0 0.00028 26.3 >3IM4_C cAMP-dependent protein kinase type I-alpha; four-helix bundle, cAMP, cAMP-binding, Disulfide; 2.285A {Bos taurus}
PVCunit1_19 plu1712 PLT_01740 2COL 2COL_A 96.9 1e-05 1.8e-10 76.0 >2COL_A Bifunctional hemolysin-adenylate cyclase (E.C.4.6.1.1); LYASE, Calcium binding, LYASE-METAL BINDING; 2.2A {Bordetella pertussis}
PVCunit2_1 plu1708 PLT_01736 5IV5 5IV5_B 99.4 3.5e-17 6.2e-22 112.1 >5IV5_BB Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCunit2_2 plu1707 PLT_01735 3J9Q 3J9Q_C 99.9 9.7e-33 1.7e-37 234.5 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit2_3 plu1706 PLT_01734 3J9Q 3J9Q_C 100.0 1.2e-33 2.1e-38 249.3 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit2_4 plu1705 PLT_01733 3J9Q 3J9Q_C 99.9 3.1e-29 5.4e-34 216.1 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit2_5 plu1704 PLT_01732 5IV5 5IV5_I 98.9 1.1e-12 1.9e-17 90.3 >5IV5_IA Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCunit2_6 plu1703 PLT_01731 4E71 4E71_A 46.2 12 0.00021 23.4 >4E71_A Plexin-B2; plexin, transmembrane, signaling, rbd, Structural; 2.26A {Homo sapiens}
PVCunit2_7 plu1702 PLT_01730 5A3A 5A3A_A 66.3 3.2 5.5e-05 33.6 >5A3A_A SIR2 FAMILY PROTEIN (E.C.2.4.2.30); TRANSFERASE, P-RIBOSYLTRANSFERASE, METALLOPROTEIN, NAD-DEPENDENT, LIPOYLATION; HET: EDO, GLY; 1.54A {STREPTOCOCCUS PYOGENES}
PVCunit2_8 plu1701 PLT_01729 2P5Z 2P5Z_X 99.9 4.8e-31 8.3e-36 237.2 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVCunit2_9 plu1700 PLT_01728 2IA7 2IA7_A 99.6 3.5e-19 6.1e-24 120.5 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVCunit2_10 plu1699 PLT_01727 2SOB 2SOB_A 40.6 16 0.00029 22.4 >2SOB_A STAPHYLOCOCCAL NUCLEASE; HYDROLASE (PHOSPHORIC DIESTER); NMR {Staphylococcus aureus} SCOP: b.40.1.1
PVCunit2_11 plu1698 PLT_01726 3H2T 3H2T_A 96.2 0.00013 2.3e-09 74.3 >3H2T_A Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVCunit2_12 plu1697 PLT_01725 2RIL 2RIL_A 24.5 46.0 0.00081 25.2 >2RIL_A Antibiotic biosynthesis monooxygenase; YP_001095275.1, Putative monooxygenase, Antibiotic biosynthesis; 1.26A {Shewanella loihica}
PVCunit2_13 plu1696 PLT_01724 1V1H 1V1H_E 95.2 0.0015 2.7e-08 52.2 >1V1H_E FIBRITIN, FIBER PROTEIN; ADENOVIRUS, CHIMERA, FIBER PROTEIN; 1.9A {HUMAN ADENOVIRUS TYPE 2, BACTERIOPHAGE T4} SCOP: b.83.1.1, h.1.17.1
PVCunit2_14 plu1695 PLT_01723 3K9K 3K9K_A 99.7 2.7e-22 4.7e-27 146.1 >3K9K_A Histone-lysine N-methyltransferase SETMAR (E.C.2.1.1.43); transposase, Chromatin regulator, DNA damage; 2.55A {Homo sapiens}
PVCunit2_15 plu1694 PLT_01722 1GYZ 1GYZ_A 18.2 76.0 0.0013 24.4 >1GYZ_A 50S RIBOSOMAL PROTEIN L20; RIBOSOMAL PROTEIN, RIBOSOME, PROTEIN SYNTHESIS; NMR {AQUIFEX AEOLICUS} SCOP: a.144.2.1
PVCunit2_16 plu1693 PLT_01721 5GJR 5GJR_M 99.7 2.2e-21 3.8e-26 188.0 >5GJR_M 26S protease regulatory subunit 4; protein complex, human proteasome, HYDROLASE; HET: ADP; 3.5A {Homo sapiens}
PVCunit2_17 plu1692 PLT_01720 3GGM 3GGM_A 76.6 1.2 2.1e-05 29.3 >3GGM_A uncharacterized protein BT9727_2919; Bacillus cereus group., Structural Genomics; 2.0A {Bacillus thuringiensis serovar konkukian}
PVCunit2_18 plu1691 PLT_01719 2GUT 2GUT_A 48.5 10 0.00018 28.7 >2GUT_A Positive cofactor 2 glutamine/Q-rich-associated protein; KIX, 3 HELICAL BUNDLE, TRANSCRIPTION; NMR {Homo sapiens}
PVCunit2_19 plu1690 PLT_01718 3ONQ 3ONQ_B 55.9 6.5 0.00011 22.6 >3ONQ_B Regulator of polyketide synthase expression; Structural Genomics, PSI-2, Protein Structure; HET: SO4, GOL; 2.098A {Bifidobacterium adolescentis}
PVCunit2_20 plu1689 PLT_01717 5MBV 5MBV_A 36.3 21 0.00037 30.0 >5MBV_A RecBCD enzyme subunit RecB (E.C.3.1.11.5); Inhibitor, Complex, DNA repair, Helicase/Nuclease;{Escherichia coli}
PVCunit3_1 plu1689 PLT_01716 5IV5 5IV5_F 99.4 3e-16 5.2e-21 107.5 >5IV5_FI Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCunit3_2 plu1688 PLT_01715 3J9Q 3J9Q_C 100.0 1.8e-33 3.2e-38 239.2 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit3_3 plu1687 PLT_01714 3J9Q 3J9Q_C 100.0 2.1e-33 3.6e-38 245.9 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit3_4 plu1686 PLT_01713 3J9Q 3J9Q_C 99.9 1e-29 1.8e-34 218.4 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit3_5 plu1685 PLT_01712 5IV5 5IV5_F 98.8 3e-12 5.3e-17 88.0 >5IV5_FH Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCunit3_6 plu1684 PLT_01711 2E3P 2E3P_B 77.2 1.1 2e-05 26.9 >2E3P_B Lipid-transfer protein CERT; LIPID TRANSFER PROTEIN, CERT, CERAMIDE; HET: 16C; 1.4A {Homo sapiens}
PVCunit3_7 plu1683 PLT_01710 2XAC 2XAC_C 45.5 12 0.00022 25.5 >2XAC_C VASCULAR ENDOTHELIAL GROWTH FACTOR B; TRANSFERASE-SIGNALING PROTEIN COMPLEX, ANGIOGENESIS, CYSTEINE-KNOT; 2.71A {HOMO SAPIENS}
PVCunit3_8 plu1682 PLT_01709 2P5Z 2P5Z_X 99.9 7.8e-32 1.4e-36 242.2 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVCunit3_9 plu1681 PLT_01708 2IA7 2IA7_A 99.5 1.3e-18 2.3e-23 116.2 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVCunit3_10 plu1680 PLT_01707 4IX9 4IX9_B 39.7 17 0.0003 24.8 >4IX9_B V-type proton ATPase subunit F; V-ATPase, stalk subunit, subunit F; HET: GOL, TRS; 2.33A {Saccharomyces cerevisiae}
PVCunit3_11 plu1679 PLT_01706 3H2T 3H2T_A 95.8 0.0004 7e-09 70.9 >3H2T_A Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVCunit3_12 plu1678 PLT_01705 3TPZ 3TPZ_B 27.1 38 0.00067 31.0 >3TPZ_B Ribosomal RNA small subunit methyltransferase; rRNA adenine dimethyltransferase, ribogenesis, TRANSFERASE; 2.1A {Escherichia coli}
PVCunit3_13 plu1677 PLT_01704 2FKK 2FKK_A 96.7 2.5e-05 4.4e-10 67.0 >2FKK_A Baseplate structural protein Gp10; Bacteriophage T4 Baseplate ; HET: EDO; 1.2A {Enterobacteria phage T4}
PVCunit3_14 plu1676 PLT_01703 5US5 5US5_B 18.3 75.0 0.0013 27.8 >5US5_B UPF0297 protein EF_1202; IreB, dimer, Structural Genomics, PSI-2; NMR {Enterococcus faecalis (strain ATCC 700802 / V583)}
PVCunit3_15 plu1675 PLT_01702 5E7P 5E7P_B 99.7 1.7e-22 2.9e-27 199.8 >5E7P_B Cell division control protein Cdc48; AAA ATPase, M. Smegmatic, RecA; HET: PG4, PGE, GOL, ADP; 2.507A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
PVCunit3_16 plu1674 PLT_01701 2OP8 2OP8_B 49.4 9.7 0.00017 22.5 >2OP8_B Probable tautomerase ywhB (E.C.5.3.2.-); 4-OT, tautomerase, ISOMERASE; 2.5A {Bacillus subtilis}
PVCunit3_17 plu1673 PLT_01700 5XXB 5XXB_e 50.5 9.1 0.00016 26.4 >5XXB_e uL2, uL3, uL4, uL18, eL6; parasitic ribosome, rRNA, rproteins, RIBOSOME; 3.17A {Toxoplasma gondii}
PVCunit3_18 plu1672 PLT_01699 4Q2G 4Q2G_B 27.6 37.0 0.00065 30.4 >4Q2G_B Phosphatidate cytidylyltransferase (E.C.2.7.7.41); intramembrane enzyme, CdsA fold, phospholipid; HET: BNG; 3.4A {Thermotoga maritima MSB8}
PVCunit3_19 plu1671 PLT_01698 2W8M 2W8M_A 24.2 47 0.00082 31.1 >2W8M_A ORF D212; SSV1, CRENARCHAEAL VIRUS, HYDROLASE; 2.4A {SULFOLOBUS VIRUS RAGGED HILLS}
PVCunit4_1 plu1667 PLT_01696 5IV5 5IV5_B 99.4 2.8e-17 5e-22 112.6 >5IV5_BB Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCunit4_2 plu1666 PLT_01695 3J9Q 3J9Q_C 99.9 3.9e-33 6.8e-38 237.2 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit4_3 plu1665 PLT_01694 3J9Q 3J9Q_C 100.0 1.5e-34 2.7e-39 254.0 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit4_4 plu1664 PLT_01693 3J9Q 3J9Q_C 99.9 2e-29 3.5e-34 217.9 >3J9Q_C sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit4_5 plu1663 PLT_01692 5IV5 5IV5_S 98.9 5.7e-13 9.9e-18 91.6 >5IV5_S Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCunit4_6 plu1662 PLT_01691 1CZ0 1CZ0_B 61.8 4.4 7.7e-05 26.8 >1CZ0_B INTRON-ENCODED HOMING ENDONUCLEASE I-PPOI (E.C.3.1.-.-)/DNA; PROTEIN-DNA COMPLEX, DISTORTED DNA, HIS-CYS; 2.1A {Physarum polycephalum} SCOP: d.4.1.3
PVCunit4_7 plu1661 PLT_01690 5A3A 5A3A_A 63.6 3.9 6.8e-05 33.1 >5A3A_A SIR2 FAMILY PROTEIN (E.C.2.4.2.30); TRANSFERASE, P-RIBOSYLTRANSFERASE, METALLOPROTEIN, NAD-DEPENDENT, LIPOYLATION; HET: EDO, GLY; 1.54A {STREPTOCOCCUS PYOGENES}
PVCunit4_8 plu1660 PLT_01689 2P5Z 2P5Z_X 99.9 1.4e-32 2.4e-37 247.1 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVCunit4_9 plu1659 PLT_01688 2IA7 2IA7_A 99.6 4.7e-19 8.2e-24 119.9 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVCunit4_10 plu1658 PLT_01687 5C2Y 5C2Y_A 32.0 28 0.00049 26.9 >5C2Y_A RNA polymerase II subunit B1; regulator of transcription, zinc finger; HET: SO4; 2.6A {Saccharomyces cerevisiae}
PVCunit4_11 plu1657 PLT_01686 3H2T 3H2T_A 96.0 0.00026 4.6e-09 72.2 >3H2T_A Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVCunit4_12 plu1656 PLT_01685 4H3K 4H3K_E 28.9 34.0 0.00059 36.0 >4H3K_E Symplekin, RNA polymerase II subunit; Heat repeat, phosphatase, RNA polymerase; 2.0A {Homo sapiens}
PVCunit4_13 plu1655 PLT_01684 2FKK 2FKK_A 97.1 2.8e-06 4.9e-11 74.3 >2FKK_A Baseplate structural protein Gp10; Bacteriophage T4 Baseplate ; HET: EDO; 1.2A {Enterobacteria phage T4}
PVCunit4_14 plu1654 PLT_01683 2BPT 2BPT_B 15.6 95.0 0.0017 24.5 >2BPT_B IMPORTIN BETA-1 SUBUNIT, NUCLEOPORIN NUP1; NUCLEAR TRANSPORT, NUCLEOCYTOPLASMIC TRANSPORT, NUCLEAR; 1.99A {SACCHAROMYCES CEREVISIAE}
PVCunit4_15 plu1653 PLT_01682 5E7P 5E7P_A 99.7 1e-21 1.8e-26 194.5 >5E7P_A Cell division control protein Cdc48; AAA ATPase, M. Smegmatic, RecA; HET: PGE, GOL, ADP, PG4; 2.507A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
PVCunit4_16 plu1652 PLT_01681 3FM2 3FM2_A 41.1 16 0.00028 28.0 >3FM2_A Uncharacterized protein, distantly related to; STRUCTURAL GENOMICS, JOINT CENTER FOR; HET: ACT; 1.8A {Anabaena variabilis ATCC 29413}
PVCunit4_17 plu1651 PLT_01680 2I88 2I88_A 56.2 6.4 0.00011 35.4 >2I88_A Colicin-E1; protein-membrane interactions, toxin-membrane interactions, toxin; 2.5A {Escherichia coli}
PVCpnf1 PAU_03353 PAU_03392 3eaa 3eaa_A 62.9 2.7 7.1e-05 29.0 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVCpnf2 PAU_03352 PAU_03391 3j9q 3j9q_A 100.0 2e-34 5.3e-39 243.5 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCpnf3 PAU_03351 PAU_03390 3j9q 3j9q_A 99.9 4e-33 1e-37 241.7 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCpnf4 PAU_03350 PAU_03389 3j9q 3j9q_A 99.8 6.5e-26 1.7e-30 195.0 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCpnf5 PAU_03349 PAU_03388 3eaa 3eaa_A 92.7 0.017 4.4e-07 40.3 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVCpnf6 PAU_03348 PAU_03387 4aaa 4aaa_A 78.2 0.68 1.8e-05 28.3 >4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A* No DOI found.
PVCpnf7 PAU_03347 PAU_03386 2v6x 2v6x_B 36.8 14 0.00036 26.4 >2v6x_B DOA4-independent degradation protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae} 10.1038/nature06171
PVCpnf8 PAU_03346 PAU_03385 4uhv 4uhv_A 99.9 8.2e-29 2.1e-33 236.9 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVCpnf9 PAU_03345 PAU_03384 2ia7 2ia7_A 99.7 1e-21 2.6e-26 130.8 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCpnf10 PAU_03344 PAU_03383 1ukf 1ukf_A 82.0 0.4 1.1e-05 36.7 >1ukf_A Avirulence protein AVRPPH3; AVRPPHB, hypersensitive response, hydrolase; 1.35A {Pseudomonas syringae PV} SCOP: d.3.1.10 10.1073/pnas.2036536100
PVCpnf11 PAU_03343 PAU_03382 3h2t 3h2t_A 97.4 4.4e-07 1.2e-11 89.7 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCpnf12 PAU_03342 PAU_03381 2ex2 2ex2_A 39.3 12.0 0.00031 38.0 >2ex2_A Penicillin-binding protein 4; cephem, penem, D-Ala alanine-carboxypeptidase, D-alanyl-D-alanine-endopeptidase, hydrolase; 1.55A {Escherichia coli} SCOP: e.3.1.3 PDB: 2ex6_A* 2ex8_A* 2ex9_A* 2exa_A* 2exb_A* 10.1021/bi051533t
PVCpnf13 PAU_03341 PAU_03380 3izo 3izo_F 98.1 2.8e-09 7.3e-14 107.6 >3izo_F Fiber; pentameric penton base, trimeri viral protein; 3.60A {Human adenovirus 5} 10.1016/j.jmb.2010.11.043
PVCpnf14 PAU_03340 PAU_03379 3c9p 3c9p_A 32.4 18 0.00047 32.2 >3c9p_A Uncharacterized protein SP1917; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 1.96A {Streptococcus pneumoniae} No DOI found.
PVCpnf15 PAU_03339 PAU_03378 5g4f 5g4f_A 99.9 2.1e-26 5.5e-31 222.3 >5g4f_A VCP-like ATPase; hydrolase, VAT, proteasome, protein dynamics, unfoldase, conformations, AAA ATPase; 7.00A {Thermoplasma acidophilum} PDB: 5g4g_A 1cz4_A 1cz5_A 10.1073/pnas.1603980113
PVCpnf16 PAU_03338 PAU_03377 5jbr 5jbr_A 29.2 22 0.00058 23.9 >5jbr_A Uncharacterized protein BCAV_2135; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 1.65A {Beutenbergia cavernae} No DOI found.
PVCpnf17 PAU_03337 PAU_03376 1yrt 1yrt_A 98.5 9e-11 2.4e-15 108.6 >1yrt_A Bifunctional hemolysin-adenylate cyclase; CYAA, layse, toxin; 2.10A {Bordetella pertussis} PDB: 1yru_A 1zot_A* 2col_A 10.1038/sj.emboj.7600800
PVCpnf18 PAU_03336 PAU_03375 5g4d 5g4d_A 60.4 3.2 8.5e-05 23.4 >5g4d_A CAS2, crispr-associated endoribonuclease CAS2; immune system, cripsr-CAS complex, adaptation; 1.70A {Thermococcus onnurineus} PDB: 4tno_A 2i0x_A 10.1002/pro.2981
PVCpnf19 PAU_03334 PAU_03374 3gqe 3gqe_A 62.7 2.7 7.2e-05 25.6 >3gqe_A Non-structural protein 3; macro domain, X domain, venezuelan equine encephalitis virus alphavirus; HET: BCN; 2.30A {Venezuelan equine encephalitis virus} PDB: 3gqo_A* 10.1128/JVI.00189-09
PVCpnf20 PAU_03333 PAU_03373 3fxq 3fxq_A 99.7 2.4e-21 6.3e-26 122.5 >3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A* 10.1111/j.1365-2958.2010.07043.x
PVCpnf21 PAU_03332 PAU_03372 1hq0 1hq0_A 100.0 1.1e-64 2.8e-69 458.4 >1hq0_A CNF1, cytotoxic necrotizing factor 1; beta sandwich, RHO deamidase, RHO transglutaminase, toxin; 1.83A {Escherichia coli} SCOP: d.194.1.1 PDB: 1hzg_A 10.1038/89610
PVCpnf22 PAU_03331 PAU_03371 2oyz 2oyz_A 62.7 2.8 7.2e-05 24.7 >2oyz_A UPF0345 protein VPA0057; unknown function, structural genomi 2, protein structure initiative, midwest center for structu genomics, MCSG; 1.71A {Vibrio parahaemolyticus} SCOP: b.82.1.22 No DOI found.
PVCpnf23 PAU_03330 PAU_03370 3hdf 3hdf_A 100.0 1.6e-41 4.1e-46 227.5 >3hdf_A Lysozyme; antimicrobial, bacteriolytic enzyme, glycosid hydrolase, late protein; 1.70A {Enterobacteria phage P21} 10.1038/nsmb.1681
PVCpnf24 PAU_03329 PAU_03369 3vp9 3vp9_A 61.6 3 7.8e-05 30.4 >3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A 10.1074/jbc.M112.369652
PVCcif1 PAU_01993 PAU_01961 3jqo 3jqo_B 41.5 10 0.00027 27.0 >3jqo_B TRAO protein; helical outer membrane TM, outer membrane protein complex, T protein; HET: LDA; 2.60A {Escherichia coli} PDB: 3zbi_B 2ofq_A 10.1038/nature08588
PVCcif2 PAU_01994 PAU_01962 3j9q 3j9q_A 99.9 4.5e-33 1.2e-37 236.1 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCcif3 PAU_01995 PAU_01963 3j9q 3j9q_A 99.9 1.3e-30 3.4e-35 228.9 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCcif4 PAU_01996 PAU_01964 3j9q 3j9q_A 99.9 9.7e-27 2.5e-31 199.5 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCcif5 PAU_01997 PAU_01965 4tv4 4tv4_A 57.2 4.0 0.0001 29.5 >4tv4_A Uncharacterized protein; unknown function, ssgcid, virulence, structural genomics; 2.10A {Burkholderia pseudomallei} No DOI found.
PVCcif6 PAU_01998 PAU_01966 3nyi 3nyi_A 42.8 9.7 0.00025 24.7 >3nyi_A FAT acid-binding protein; stearic acid, DEGV family protein, structural genomics, PSI- protein structure initiative; HET: STE; 1.90A {Eubacterium ventriosum} No DOI found.
PVCcif7 PAU_01999 PAU_01967 5a3a 5a3a_A 47.5 7.3 0.00019 30.9 >5a3a_A SIR2 family protein; transferase, P-ribosyltransferase, metalloprotein, NAD-depen lipoylation, regulatory enzyme, rossmann fold; 1.54A {Streptococcus pyogenes} PDB: 5a3b_A* 5a3c_A* 10.1016/j.molcel.2015.06.013
PVCcif8 PAU_02000 PAU_01968 4uhv 4uhv_A 99.9 1e-27 2.6e-32 229.1 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVCcif9 PAU_02001 PAU_01969 2ia7 2ia7_A 99.7 8.1e-22 2.1e-26 132.1 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCcif10 PAU_02002 PAU_01970 3dfz 3dfz_A 35.9 15 0.00038 26.2 >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} 10.1042/BJ20080785
PVCcif11 PAU_02003 PAU_01971 3h2t 3h2t_A 96.4 5.2e-05 1.4e-09 76.8 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCcif12 PAU_02004 PAU_01972 4orl 4orl_A 63.3 2.6 6.9e-05 37.5 >4orl_A Uncharacterized protein; PF16022 family, DUF4783, structural genomics, joint center F structural genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Bacteroides ovatus} No DOI found.
PVCcif13 PAU_02005 PAU_01973 1ocy 1ocy_A 98.4 2.3e-10 6e-15 91.7 >1ocy_A Bacteriophage T4 short tail fibre; structural protein, fibrous protein, LIPO-polysaccharide binding, bacteriophage structural protein; HET: CIT; 1.5A {Bacteriophage T4} SCOP: d.231.1.1 10.1016/S0022-2836(03)00755-1
PVCcif14 PAU_02006 PAU_01974 2d8r 2d8r_A 42.5 9.8 0.00026 29.1 >2d8r_A THAP domain-containing protein 2; NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.16 No DOI found.
PVCcif15 PAU_02007 PAU_01975 5e7p 5e7p_A 99.8 4.8e-26 1.3e-30 230.3 >5e7p_A Cell division control protein CDC48; AAA ATPase, M. smegmatic, RECA, hydrolase; HET: ADP PG4 PGE; 2.51A {Mycobacterium smegmatis} 10.1128/JB.00905-15
PVCcif16 PAU_02008 PAU_01976 4adx 4adx_G 38.8 12 0.00032 27.2 >4adx_G RPLX; ribosome, protein synthesis; 6.60A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2jxt_A 10.1016/j.jmb.2012.01.018
PVCcif17 PAU_02009 PAU_01977 4fbj 4fbj_A 100.0 4.2e-96 1e-100 648.7 >4fbj_A CIF, hypothetical protein; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Photorhabdus luminescens subsp} PDB: 3gqj_A No DOI found.
PVCcif18 PAU_02010 PAU_01978 2b9i 2b9i_C 28.4 24 0.00061 22.2 >2b9i_C MSG5, tyrosine-protein phosphatase MSG5; transferase; HET: ADP; 2.50A {Saccharomyces cerevisiae} 10.1016/j.molcel.2005.10.030
PVCcif19 PAU_02011 PAU_01979 2hxj 2hxj_A 61.1 3.1 8.1e-05 34.1 >2hxj_A Hypothetical protein; APC83807, structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.21A {Neisseria meningitidis MC58} SCOP: a.136.1.1 PDB: 3mw6_A Key error. ID likely deprecated.
PVCcif20 PAU_02012 PAU_01980 3gkn 3gkn_A 37.8 13 0.00034 22.7 >3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A 10.1016/j.jmb.2009.05.030
PVClumT1 PAU_02247 PAU_02206 3eaa 3eaa_A 61.3 3.0 7.9e-05 28.7 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVClumT2 PAU_02246 PAU_02205 3j9q 3j9q_A 99.9 8.1e-31 2.1e-35 228.3 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClumT3 PAU_02245 PAU_02204 3j9q 3j9q_A 99.9 2.8e-28 7.4e-33 208.3 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClumT4 PAU_02244 PAU_02203 3eaa 3eaa_A 52.9 5.3 0.00014 27.7 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVClumT5 PAU_02243 PAU_02202 1use 1use_A 67.8 1.9 4.9e-05 23.9 >1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A 10.1073/pnas.0403069101
PVClumT6 PAU_02242 PAU_02201 4v2x 4v2x_A 32.7 18.0 0.00047 31.3 >4v2x_A Endo-beta-1,4-glucanase (cellulase B); hydrolase, TRI-modular; 1.64A {Bacillus halodurans} 10.1074/jbc.M115.637827
PVClumT7 PAU_02241 PAU_02200 2p5z 2p5z_X 99.7 5.6e-22 1.5e-26 179.9 >2p5z_X Type VI secretion system component; structural genomics, unknown function, PSI-2, protein struct initiative; 2.60A {Escherichia coli O6} SCOP: b.40.8.1 b.106.1.1 b.106.1.1 10.1073/pnas.0813360106
PVClumT8 PAU_02240 PAU_02199 2ia7 2ia7_A 99.7 3.7e-22 9.6e-27 133.8 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVClumT9 afp10 PAU_02198 4jiv 4jiv_D 69.6 1.6 4.2e-05 27.5 >4jiv_D VCA0105, putative uncharacterized protein; PAAR-repeat motif, membrane piercing, type VI secretion SYST vibrio cholerae VGRG2; HET: PLM STE ELA; 1.90A {Vibrio cholerae o1 biovar eltor} 10.1038/nature12453
PVClumT10 afp11 PAU_02197 3h2t 3h2t_A 96.8 9.6e-06 2.5e-10 78.8 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVClumT11 PAU_02237 PAU_02196 1yo5 1yo5_C 39.5 12 0.00031 32.1 >1yo5_C SAM pointed domain containing ETS transcription factor; protein-DNA complex, double helix, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.4.5.21 10.1021/bi047352t
PVClumT12 PAU_02236 PAU_02195 1v1h 1v1h_A 97.7 9.4e-08 2.4e-12 71.3 >1v1h_A Fibritin, fiber protein; chimera; 1.9A {Human adenovirus type 2} SCOP: b.83.1.1 h.1.17.1 PDB: 1v1i_A 10.1016/j.jmb.2004.07.008
PVClumT13 PAU_02235 PAU_02194 1osn 1osn_A 41.0 11 0.00028 36.0 >1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1 10.1074/jbc.M302025200
PVClumT14 PAU_02234 PAU_02193 4uid 4uid_A 63.3 2.6 6.9e-05 31.3 >4uid_A S-layer SBSC, surface layer protein; sugar binding protein, G. stearothermophilus; 2.80A {Geobacillus stearothermophilus} No DOI found.
PVClumT15 PAU_02233 PAU_02192 1tdp 1tdp_A 22.1 37.0 0.00096 27.2 >1tdp_A Carnobacteriocin B2 immunity protein; four-helix bundle, antimicrobial protein; NMR {Carnobacterium maltaromaticum} SCOP: a.29.8.1 10.1021/bi048854+
PVClumT16 PAU_02232 PAU_02191 5ftj 5ftj_A 99.8 2.9e-25 7.6e-30 220.3 >5ftj_A Transitional endoplasmic reticulum ATPase; hydrolase, single-particle, AAA ATPase; HET: ADP OJA; 2.30A {Homo sapiens} PDB: 3cf1_A* 3cf3_A* 3cf2_A* 5ftk_A* 5ftl_A* 5ftm_A* 5ftn_A* 1r7r_A* 5c19_A 5c1b_A* 5c18_A* 3cf0_A* 10.1126/science.aad7974
PVClumT17 PAU_02231 PAU_02190 3lfh 3lfh_A 39.7 12 0.0003 28.9 >3lfh_A Manxa, phosphotransferase system, mannose/fructose-speci component IIA; PTS; 1.80A {Thermoanaerobacter tengcongensis} No DOI found.
PVClumT18 PAU_02230 PAU_02189 4mix 4mix_A 100.0 6e-57 1.6e-61 486.1 >4mix_A Putative insecticidal toxin; tyrosine glycosylation, UDP-GLCNAC, nucleotide-binding domai rossmann-like, glycosyltransferase; HET: MSE UD1; 1.80A {Photorhabdus asymbiotica subsp} 10.1038/nsmb.2688
PVClopT1 PAU_02112 PAU_02074 3eaa 3eaa_A 83.5 0.32 8.3e-06 33.5 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVClopT2 PAU_02111 PAU_02073 3j9q 3j9q_A 100.0 2.8e-35 7.3e-40 248.2 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClopT3 PAU_02110 PAU_02072 3j9q 3j9q_A 99.9 3.9e-31 1e-35 226.1 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClopT4 PAU_02109 PAU_02071 4tv4 4tv4_A 70.8 1.5 3.8e-05 31.8 >4tv4_A Uncharacterized protein; unknown function, ssgcid, virulence, structural genomics; 2.10A {Burkholderia pseudomallei} No DOI found.
PVClopT5 PAU_02108 PAU_02070 4hf1 4hf1_A 81.1 0.47 1.2e-05 28.7 >4hf1_A HTH-type transcriptional regulator ISCR; WHTH, protein-DNA complex, iron-sulfur cluster, winged helix helix, transcriptional regulator, redox sensor; HET: DNA; 2.22A {Escherichia coli} PDB: 4hf2_A* 4chu_A 10.1038/nsmb.2568
PVClopT6 PAU_02107 PAU_02069 2vol 2vol_A 28.5 23 0.00061 22.9 >2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A Key error. ID likely deprecated.
PVClopT7 PAU_02106 PAU_02068 4uhv 4uhv_A 99.9 8.6e-30 2.2e-34 243.3 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVClopT8 PAU_02105 PAU_02067 2ia7 2ia7_A 99.8 2.3e-23 6e-28 138.6 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVClopT9 PAU_02104 PAU_02066 3ojo 3ojo_A 31.3 19 0.00051 28.0 >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* 10.1074/jbc.M110.216002
PVClopT10 PAU_02103 PAU_02065 3h2t 3h2t_A 97.1 2.3e-06 6.1e-11 89.7 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVClopT11 PAU_02102 PAU_02064 1pqx 1pqx_A 37.4 13 0.00035 31.4 >1pqx_A Conserved hypothetical protein; ZR18,structure, autostructure,spins,autoassign, northeast structural genomics consortium; NMR {Staphylococcus aureus subsp} SCOP: d.267.1.1 PDB: 2ffm_A 2m6q_A 2m8w_A No DOI found.
PVClopT12 PAU_02101 PAU_02063 4yap 4yap_A 31.1 20 0.00052 29.1 >4yap_A Glutathione S-transferase homolog; GSH-lyase GSH-dependent; 1.11A {Sphingobium SP} PDB: 4g10_A 4yav_A* 10.1074/jbc.M115.700427
PVClopT13 PAU_02100 PAU_02062 5e7p 5e7p_A 99.9 2e-26 5.3e-31 232.9 >5e7p_A Cell division control protein CDC48; AAA ATPase, M. smegmatic, RECA, hydrolase; HET: ADP PG4 PGE; 2.51A {Mycobacterium smegmatis} 10.1128/JB.00905-15
PVClopT14 PAU_02099 PAU_02061 3rbt 3rbt_A 19.3 46.0 0.0012 25.1 >3rbt_A Glutathione transferase O1; glutathione S-transferase omega3; 2.20A {Bombyx mori} 10.1016/j.jmb.2011.07.019
PVClopT15 PAU_02098 PAU_02060 2ebf 2ebf_X 100.0 5.6e-90 1.5e-94 707.6 >2ebf_X Dermonecrotic toxin; pasteurella multocida toxin, trojan horse-like fold; HET: TRE; 1.90A {Pasteurella multocida} SCOP: a.296.1.1 c.150.1.2 d.3.1.17 PDB: 2ec5_A 2ebh_X* 10.1073/pnas.0608197104
PVClopT16 PAU_02097 PAU_02059 2jsp 2jsp_A 15.3 66.0 0.0017 24.7 >2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens} 10.1073/pnas.0706659104
PVClopT17 PAU_02096 PAU_02058 1ukf 1ukf_A 99.9 1.4e-26 3.8e-31 195.3 >1ukf_A Avirulence protein AVRPPH3; AVRPPHB, hypersensitive response, hydrolase; 1.35A {Pseudomonas syringae PV} SCOP: d.3.1.10 10.1073/pnas.2036536100
PVClopT18 PAU_02095 PAU_02057 4igl 4igl_B 100.0 8.8e-59 2.3e-63 451.0 >4igl_B YENC2; beta-propeller, RHS, toxin complex, toxin transporter/chaper secreted, toxin; 2.49A {Yersinia} 10.1038/nature12465
PVCunit1_1 afp1 PAU_02775 3eaa 3eaa_A 73.0 1.2 3.1e-05 30.8 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVCunit1_2 afp2 PAU_02776 3j9q 3j9q_A 100.0 3.7e-36 9.7e-41 254.4 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit1_3 afp3 PAU_02777 3j9q 3j9q_A 100.0 2.6e-35 6.9e-40 257.2 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit1_4 afp4 PAU_02778 3j9q 3j9q_A 99.9 3.6e-29 9.5e-34 214.6 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit1_5 afp5 PAU_02779 4tv4 4tv4_A 63.6 2.6 6.7e-05 30.5 >4tv4_A Uncharacterized protein; unknown function, ssgcid, virulence, structural genomics; 2.10A {Burkholderia pseudomallei} No DOI found.
PVCunit1_6 afp7 PAU_02780 4e71 4e71_A 48.8 6.8 0.00018 24.0 >4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens} No DOI found.
PVCunit1_7 afp7 PAU_02781 5a3a 5a3a_A 45.8 8.1 0.00021 30.6 >5a3a_A SIR2 family protein; transferase, P-ribosyltransferase, metalloprotein, NAD-depen lipoylation, regulatory enzyme, rossmann fold; 1.54A {Streptococcus pyogenes} PDB: 5a3b_A* 5a3c_A* 10.1016/j.molcel.2015.06.013
PVCunit1_8 PAU_02796 PAU_02782 4uhv 4uhv_A 99.9 1.4e-30 3.7e-35 248.7 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVCunit1_9 afp9 PAU_02783 2ia7 2ia7_A 99.7 5.4e-22 1.4e-26 133.1 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCunit1_10 afp10 PAU_02784 1pml 1pml_A 37.7 13 0.00034 21.4 >1pml_A Tissue plasminogen activator kringle 2; hydrolase(serine protease); 2.38A {Homo sapiens} SCOP: g.14.1.1 PDB: 1pk2_A* 1tpk_A 10.1002/pro.5560030605
PVCunit1_11 afp11 PAU_02785 3h2t 3h2t_A 96.7 1.5e-05 3.9e-10 80.6 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCunit1_12 afp12 PAU_02786 1pqx 1pqx_A 18.2 51.0 0.0013 28.2 >1pqx_A Conserved hypothetical protein; ZR18,structure, autostructure,spins,autoassign, northeast structural genomics consortium; NMR {Staphylococcus aureus subsp} SCOP: d.267.1.1 PDB: 2ffm_A 2m6q_A 2m8w_A No DOI found.
PVCunit1_13 PAU_02801 PAU_02787 1ocy 1ocy_A 98.3 6.7e-10 1.8e-14 92.9 >1ocy_A Bacteriophage T4 short tail fibre; structural protein, fibrous protein, LIPO-polysaccharide binding, bacteriophage structural protein; HET: CIT; 1.5A {Bacteriophage T4} SCOP: d.231.1.1 10.1016/S0022-2836(03)00755-1
PVCunit1_14 orf25 PAU_02788 3dzd 3dzd_A 24.8 30 0.00078 28.5 >3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A 10.1016/j.jmb.2008.10.024
PVCunit1_15 PAU_02803 PAU_02789 5e7p 5e7p_A 99.9 4.9e-28 1.3e-32 244.9 >5e7p_A Cell division control protein CDC48; AAA ATPase, M. smegmatic, RECA, hydrolase; HET: ADP PG4 PGE; 2.51A {Mycobacterium smegmatis} 10.1128/JB.00905-15
PVCunit1_16 PAU_02804 PAU_02790 4uhq 4uhq_A 35.4 15 0.00039 29.3 >4uhq_A Large component of pyocin AP41; hydrolase, bacteriocin, DNAse; HET: CIT; 1.50A {Pseudomonas aeruginosa} PDB: 4uhp_A* 10.1016/j.jmb.2015.07.014
PVCunit1_17 hrpN PAU_02791 1yqf 1yqf_A 60.7 3.2 8.3e-05 33.9 >1yqf_A Hypothetical protein LMAJ011689; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.30A {Leishmania major} SCOP: d.25.1.1 No DOI found.
PVCunit1_18 PAU_02806 PAU_02792 1t6u 1t6u_A 24.5 31 0.0008 28.1 >1t6u_A Superoxide dismutase [NI]; nickel, 4-helix bundle, hexamer, nisod, SOD, high resolution, oxidoreductase; 1.30A {Streptomyces coelicolor} SCOP: a.24.22.1 PDB: 1t6q_A 1t6i_A 3g4z_A 3g4x_A 4ncq_A 3g50_A 1q0g_A 1q0f_A 1q0d_A 1q0k_A 1q0m_A 10.1021/bi0496081
PVCunit1_19 PAU_02807 PAU_02793 3kx6 3kx6_A 19.7 45 0.0012 31.3 >3kx6_A Fructose-bisphosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, glycolysis, lyase, STRU genomics; HET: CIT; 2.10A {Babesia bovis} No DOI found.
PVCunit1_20 PAU_02808 PAU_02794 1vyy 1vyy_A 99.9 8.9e-33 2.3e-37 218.9 >1vyy_A Lectin; sugar-binding protein, D-mannose, plant pathogen; HET: BMA MAN; 1.00A {Ralstonia solanacearum} PDB: 1uqx_A* 2chh_A* Key error. ID likely deprecated.
PVCpnf1 PAK_3544 PAK_03203 3eaa 3eaa_A 78.5 0.66 1.7e-05 32.1 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVCpnf2 PAK_3543 PAK_03202 3j9q 3j9q_A 100.0 3e-34 7.9e-39 242.5 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCpnf3 PAK_3542 PAK_03201 3j9q 3j9q_A 99.9 8.7e-33 2.3e-37 239.9 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCpnf4 PAK_3541 PAK_03200 3j9q 3j9q_A 99.9 7.1e-27 1.8e-31 200.5 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCpnf5 PAK_3540 PAK_03199 3eaa 3eaa_A 92.6 0.018 4.7e-07 40.1 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVCpnf6 PAK_3539 PAK_03198 4aaa 4aaa_A 78.2 0.68 1.8e-05 28.3 >4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A* No DOI found.
PVCpnf7 PAK_3538 PAK_03197 1pp0 1pp0_A 18.8 48.0 0.0013 26.7 >1pp0_A Volvatoxin A2; ingot crystal form; 1.42A {Volvariella volvacea} SCOP: d.103.1.1 PDB: 1pp6_A 1vgf_A 1vcy_A 10.1016/j.jmb.2004.08.045
PVCpnf8 PAK_3537 PAK_03196 4uhv 4uhv_A 99.9 9.9e-29 2.6e-33 236.3 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVCpnf9 PAK_3536 PAK_03195 2ia7 2ia7_A 99.7 1.5e-21 3.9e-26 129.9 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCpnf10 PAK_3535 PAK_03194 1ukf 1ukf_A 77.5 0.75 1.9e-05 35.1 >1ukf_A Avirulence protein AVRPPH3; AVRPPHB, hypersensitive response, hydrolase; 1.35A {Pseudomonas syringae PV} SCOP: d.3.1.10 10.1073/pnas.2036536100
PVCpnf11 PAK_3534 PAK_03193 3h2t 3h2t_A 96.8 8.4e-06 2.2e-10 80.7 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCpnf12 PAK_3533 PAK_03192 2jpf 2jpf_A 32.7 18.0 0.00046 34.1 >2jpf_A Hypothetical protein; all alpha helical protein, type III secretion effector protein, structural genomics; NMR {Bordetella parapertussis} No DOI found.
PVCpnf13 PAK_3532 PAK_03191 2xgf 2xgf_A 97.8 4e-08 1.1e-12 86.2 >2xgf_A Long tail fiber protein P37; viral protein; 2.20A {Enterobacteria phage T4} 10.1073/pnas.1011218107
PVCpnf14 PAK_3531 PAK_03190 3fx7 3fx7_A 45.3 8.3 0.00022 28.7 >3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} PDB: 2gts_A 10.1093/jb/mvp098
PVCpnf15 PAK_3530 PAK_03189 5g4f 5g4f_A 99.9 7e-27 1.8e-31 225.6 >5g4f_A VCP-like ATPase; hydrolase, VAT, proteasome, protein dynamics, unfoldase, conformations, AAA ATPase; 7.00A {Thermoplasma acidophilum} PDB: 5g4g_A 1cz4_A 1cz5_A 10.1073/pnas.1603980113
PVCpnf16 PAK_3529 PAK_03188 3t5s 3t5s_A 61.4 3 7.9e-05 30.2 >3t5s_A Gilaa.00834.A, macrophage migration inhibitory factor; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Giardia lamblia} 10.1007/s10969-013-9155-9
PVCpnf17 PAK_3527 PAK_03187 4ae8 4ae8_A 59.8 3.4 8.8e-05 27.4 >4ae8_A Thioesterase superfamily member 4; hydrolase, hotdog-fold; 1.59A {Homo sapiens} PDB: 4gah_A* 10.1128/MCB.00312-12
PVCpnf18 PAK_3526 PAK_03186 3fxq 3fxq_A 99.7 2.7e-21 7e-26 122.2 >3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A* 10.1111/j.1365-2958.2010.07043.x
PVCpnf19 PAK_3525 PAK_03185 4mix 4mix_A 100.0 5e-35 1.3e-39 251.4 >4mix_A Putative insecticidal toxin; tyrosine glycosylation, UDP-GLCNAC, nucleotide-binding domai rossmann-like, glycosyltransferase; HET: MSE UD1; 1.80A {Photorhabdus asymbiotica subsp} 10.1038/nsmb.2688
PVCpnf20 PAK_3524 PAK_03184 1xju 1xju_A 99.4 4.1e-17 1.1e-21 98.8 >1xju_A Lysozyme; secreted inactive conformation, hydrolase; 1.07A {Enterobacteria phage P1} SCOP: d.2.1.3 10.1126/science.1105143
PVCpnf21 PAK_3523 PAK_03183 3hdf 3hdf_A 99.7 1.5e-22 3.8e-27 125.9 >3hdf_A Lysozyme; antimicrobial, bacteriolytic enzyme, glycosid hydrolase, late protein; 1.70A {Enterobacteria phage P21} 10.1038/nsmb.1681
PVCpnf22 PAK_3522 PAK_03182 1l8d 1l8d_A 69.1 1.7 4.4e-05 28.9 >1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1 10.1038/nature00922
PVCpnf23 PAK_3521 PAK_03181 3hdf 3hdf_A 100.0 1.8e-42 4.7e-47 232.0 >3hdf_A Lysozyme; antimicrobial, bacteriolytic enzyme, glycosid hydrolase, late protein; 1.70A {Enterobacteria phage P21} 10.1038/nsmb.1681
PVCcif1 PAK_1969 PAK_01787 3jqo 3jqo_B 40.9 11 0.00028 26.9 >3jqo_B TRAO protein; helical outer membrane TM, outer membrane protein complex, T protein; HET: LDA; 2.60A {Escherichia coli} PDB: 3zbi_B 2ofq_A 10.1038/nature08588
PVCcif2 PAK_1970 PAK_01788 3j9q 3j9q_A 100.0 3.7e-34 9.7e-39 242.8 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCcif3 PAK_1971 PAK_01789 3j9q 3j9q_A 99.9 1.8e-31 4.8e-36 234.4 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCcif4 PAK_1972 PAK_01790 3j9q 3j9q_A 99.9 3.9e-27 1e-31 202.0 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCcif5 PAK_1973 PAK_01791 4tv4 4tv4_A 40.1 11 0.0003 27.1 >4tv4_A Uncharacterized protein; unknown function, ssgcid, virulence, structural genomics; 2.10A {Burkholderia pseudomallei} No DOI found.
PVCcif6 PAK_1974 PAK_01792 3rjr 3rjr_A 53.8 5 0.00013 26.1 >3rjr_A Transforming growth factor beta-1; TGF beta, activation, integrin, cytokine; HET: NAG; 3.05A {Sus scrofa} 10.1038/nature10152
PVCcif7 PAK_1975 PAK_01793 5a3a 5a3a_A 50.8 6 0.00016 31.4 >5a3a_A SIR2 family protein; transferase, P-ribosyltransferase, metalloprotein, NAD-depen lipoylation, regulatory enzyme, rossmann fold; 1.54A {Streptococcus pyogenes} PDB: 5a3b_A* 5a3c_A* 10.1016/j.molcel.2015.06.013
PVCcif8 PAK_1976 PAK_01794 4uhv 4uhv_A 99.9 4.6e-28 1.2e-32 231.4 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVCcif9 PAK_1977 PAK_01795 2ia7 2ia7_A 99.7 9.7e-22 2.5e-26 131.7 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCcif10 PAK_1978 PAK_01796 2k4r 2k4r_A 37.5 13 0.00035 21.5 >2k4r_A Neurotrypsin; kringle domain, disulfide-rich protein fold, serine endopeptidase, hydrolase, extracellular proteolysis; NMR {Rattus norvegicus} PDB: 2k51_A 10.1021/bi800555z
PVCcif11 PAK_1979 PAK_01797 3h2t 3h2t_A 96.1 0.00012 3.2e-09 74.0 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCcif12 PAK_1980 PAK_01798 5efx 5efx_A 68.5 1.8 4.6e-05 36.3 >5efx_A RHO guanine nucleotide exchange factor 2; RHO GTPase, activity, signaling protein; 2.45A {Homo sapiens} 10.1016/j.bbrc.2016.01.150
PVCcif13 PAK_1981 PAK_01799 1ocy 1ocy_A 98.3 5.2e-10 1.4e-14 89.6 >1ocy_A Bacteriophage T4 short tail fibre; structural protein, fibrous protein, LIPO-polysaccharide binding, bacteriophage structural protein; HET: CIT; 1.5A {Bacteriophage T4} SCOP: d.231.1.1 10.1016/S0022-2836(03)00755-1
PVCcif14 PAK_1982 PAK_01800 1tuz 1tuz_A 21.4 39.0 0.001 26.1 >1tuz_A Diacylglycerol kinase alpha; transferase, HR532, nesgc, structural genomics, PSI, protein structure initiative; NMR {Homo sapiens} SCOP: a.39.1.7 No DOI found.
PVCcif15 PAK_1983 PAK_01801 5e7p 5e7p_A 99.8 5.5e-25 1.4e-29 222.7 >5e7p_A Cell division control protein CDC48; AAA ATPase, M. smegmatic, RECA, hydrolase; HET: ADP PG4 PGE; 2.51A {Mycobacterium smegmatis} 10.1128/JB.00905-15
PVCcif16 PAK_1984 PAK_01802 3fxd 3fxd_B 34.1 16 0.00043 28.1 >3fxd_B Protein ICMR; helix bundle, helix-turn-helix, unknown function; 2.10A {Legionella pneumophila subsp} PDB: 3fxe_B 10.1016/j.str.2009.02.011
PVCcif17 PAK_1985 PAK_01803 4fbj 4fbj_A 100.0 2.4e-91 6.3e-96 618.6 >4fbj_A CIF, hypothetical protein; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Photorhabdus luminescens subsp} PDB: 3gqj_A No DOI found.
PVCcif18 PAK_1986 PAK_01804 3r2n 3r2n_A 31.0 20 0.00052 26.9 >3r2n_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.30A {Mycobacterium leprae} 10.1016/j.tube.2014.12.003
PVCcif19 PAK_1987 PAK_01805 5ewy 5ewy_A 97.3 6.2e-07 1.6e-11 74.4 >5ewy_A Putative ADP-ribosyltransferase scabin; inhibitor, transferase-transferase inhibitor CO; HET: 5TQ; 1.40A {Streptomyces scabiei 87} PDB: 5ewk_A* 10.1074/jbc.M115.707653
PVCcif20 PAK_1988 PAK_01806 2hxj 2hxj_A 74.1 1.1 2.8e-05 35.9 >2hxj_A Hypothetical protein; APC83807, structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.21A {Neisseria meningitidis MC58} SCOP: a.136.1.1 PDB: 3mw6_A Key error. ID likely deprecated.
PVClumt1 PAK_2216 PAK_02014 3eaa 3eaa_A 69.3 1.7 4.3e-05 30.1 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVClumt2 PAK_2215 PAK_02013 3j9q 3j9q_A 99.6 1.4e-19 3.6e-24 154.2 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClumt3 PAK_2214 PAK_02012 3j9q 3j9q_A 98.2 1.5e-09 3.9e-14 75.6 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClumt4 PAK_2213 PAK_02011 3j9q 3j9q_A 99.9 7.2e-29 1.9e-33 212.0 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClumt5 PAK_2212 PAK_02010 3eaa 3eaa_A 72.5 1.2 3.3e-05 30.9 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVClumt6 PAK_2211 PAK_02009 1use 1use_A 68.7 1.7 4.5e-05 24.0 >1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A 10.1073/pnas.0403069101
PVClumt7 PAK_2210 PAK_02008 4v2x 4v2x_A 33.0 17.0 0.00046 31.3 >4v2x_A Endo-beta-1,4-glucanase (cellulase B); hydrolase, TRI-modular; 1.64A {Bacillus halodurans} 10.1074/jbc.M115.637827
PVClumt8 PAK_2209 PAK_02007 2p5z 2p5z_X 99.7 1.5e-21 3.8e-26 177.2 >2p5z_X Type VI secretion system component; structural genomics, unknown function, PSI-2, protein struct initiative; 2.60A {Escherichia coli O6} SCOP: b.40.8.1 b.106.1.1 b.106.1.1 10.1073/pnas.0813360106
PVClumt9 PAK_2208 PAK_02006 2ia7 2ia7_A 99.7 6.7e-22 1.7e-26 132.6 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVClumt10 PAK_2207 PAK_02005 3ull 3ull_A 58.1 3.8 9.8e-05 26.7 >3ull_A DNA binding protein; DNA replication, mitochondrion, transit peptide; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 PDB: 1s3o_A* 2dud_A 10.1038/nsb0297-153
PVClumt11 PAK_2206 PAK_02004 2kcp 2kcp_A 37.9 13 0.00034 29.9 >2kcp_A 30S ribosomal protein S8E; RPS8E, beta, NESG, ribonucleoprotein, structural genomics, PSI-2; NMR {Methanothermobacter thermautotrophicusstr} PDB: 2kcy_A No DOI found.
PVClumt12 PAK_2205 PAK_02003 3h2t 3h2t_A 96.2 8.2e-05 2.1e-09 63.5 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVClumt13 PAK_2204 PAK_02002 1yo5 1yo5_C 39.0 12 0.00032 32.1 >1yo5_C SAM pointed domain containing ETS transcription factor; protein-DNA complex, double helix, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.4.5.21 10.1021/bi047352t
PVClumt14 PAK_2203 PAK_02001 1v1h 1v1h_A 95.3 0.00092 2.4e-08 49.5 >1v1h_A Fibritin, fiber protein; chimera; 1.9A {Human adenovirus type 2} SCOP: b.83.1.1 h.1.17.1 PDB: 1v1i_A 10.1016/j.jmb.2004.07.008
PVClumt15 PAK_2202 PAK_02000 1osn 1osn_A 25.9 28 0.00073 33.2 >1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1 10.1074/jbc.M302025200
PVClumt16 PAK_2201 PAK_01999 4uid 4uid_A 64.8 2.4 6.2e-05 31.5 >4uid_A S-layer SBSC, surface layer protein; sugar binding protein, G. stearothermophilus; 2.80A {Geobacillus stearothermophilus} No DOI found.
PVClumt17 PAK_2200 PAK_01998 3k8p 3k8p_C 34.7 16.0 0.00041 34.1 >3k8p_C DSL1, KLLA0C02695P; intracellular trafficking, DSL1 complex, multisubunit tethering complex, snare proteins; 2.60A {Kluyveromyces lactis} 10.1016/j.cell.2009.11.002
PVClumt18 PAK_2199 PAK_01997 5ftj 5ftj_A 99.9 1.6e-26 4.2e-31 229.2 >5ftj_A Transitional endoplasmic reticulum ATPase; hydrolase, single-particle, AAA ATPase; HET: ADP OJA; 2.30A {Homo sapiens} PDB: 3cf1_A* 3cf3_A* 3cf2_A* 5ftk_A* 5ftl_A* 5ftm_A* 5ftn_A* 1r7r_A* 5c19_A 5c1b_A* 5c18_A* 3cf0_A* 10.1126/science.aad7974
PVClumt19 PAK_2198 PAK_01996 3lfh 3lfh_A 39.5 12 0.00031 28.9 >3lfh_A Manxa, phosphotransferase system, mannose/fructose-speci component IIA; PTS; 1.80A {Thermoanaerobacter tengcongensis} No DOI found.
PVClumt20 PAK_2197 PAK_01995 1wrd 1wrd_A 43.2 9.4 0.00025 32.8 >1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1 PDB: 2n2n_A 10.1016/j.febslet.2005.08.076
PVClumt21 PAK_2195 PAK_01994 4mix 4mix_A 100.0 8.9e-44 2.3e-48 348.7 >4mix_A Putative insecticidal toxin; tyrosine glycosylation, UDP-GLCNAC, nucleotide-binding domai rossmann-like, glycosyltransferase; HET: MSE UD1; 1.80A {Photorhabdus asymbiotica subsp} 10.1038/nsmb.2688
PVClopt1 PAK_2092 PAK_01896 3eaa 3eaa_A 82.2 0.39 1e-05 33.1 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVClopt2 PAK_2091 PAK_01895 3j9q 3j9q_A 100.0 2.5e-35 6.4e-40 248.6 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClopt3 PAK_2090 PAK_01894 3j9q 3j9q_A 99.9 1.8e-29 4.6e-34 215.9 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClopt4 PAK_2089 PAK_01893 3eaa 3eaa_A 64.9 2.3 6.1e-05 29.4 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVClopt5 PAK_2088 PAK_01892 2v1l 2v1l_A 26.7 26 0.00069 22.5 >2v1l_A Hypothetical protein; pathogenicity island, unknown function; 2.13A {Vibrio cholerae} 10.1002/prot.21993
PVClopt6 PAK_2087 PAK_01891 3zo0 3zo0_A 61.8 2.9 7.7e-05 27.8 >3zo0_A IG gamma-2A chain C region, A allele; immune system-ligase complex; HET: NAG BMA MAN GAL FUC; 1.99A {Mus musculus} PDB: 2rgs_A* 10.1073/pnas.0800159105
PVClopt7 PAK_2086 PAK_01890 4uhv 4uhv_A 99.9 8.4e-29 2.2e-33 236.5 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVClopt8 PAK_2085 PAK_01889 2ia7 2ia7_A 99.8 2.2e-23 5.8e-28 137.0 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVClopt9 PAK_2084 PAK_01888 3ojo 3ojo_A 69.6 1.6 4.2e-05 34.0 >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* 10.1074/jbc.M110.216002
PVClopt10 PAK_2083 PAK_01887 3h2t 3h2t_A 96.8 9.7e-06 2.5e-10 85.1 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVClopt11 PAK_2082 PAK_01886 1ip9 1ip9_A 49.1 6.6 0.00017 31.0 >1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A 10.1093/emboj/20.15.3947
PVClopt12 PAK_2081 PAK_01885 1nvp 1nvp_B 34.5 16 0.00042 26.7 >1nvp_B Transcription initiation factor IIA alpha chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: a.32.1.1 PDB: 5fur_B* 10.1016/S0022-2836(03)00887-8
PVClopt13 PAK_2080 PAK_01884 5e7p 5e7p_A 99.8 4.3e-26 1.1e-30 230.6 >5e7p_A Cell division control protein CDC48; AAA ATPase, M. smegmatic, RECA, hydrolase; HET: ADP PG4 PGE; 2.51A {Mycobacterium smegmatis} 10.1128/JB.00905-15
PVClopt14 PAK_2079 PAK_01883 4x8k 4x8k_B 31.6 19.0 0.0005 28.0 >4x8k_B RNA polymerase-binding protein RBPA, RNA polymerase sigma factor SIGA; transcription activator; HET: EDO; 2.20A {Mycobacterium tuberculosis} PDB: 2m6p_A 10.1073/pnas.1504942112
PVClopt15 PAK_2078 PAK_01882 2l1n 2l1n_A 52.8 5.3 0.00014 27.8 >2l1n_A Uncharacterized protein; DUF1823, hypothetical protein, cyanobacteria, structural GEN PSI-biology, protein structure initiative; NMR {Synechococcus elongatus} No DOI found.
PVClopt16 PAK_2077 PAK_01881 1ukf 1ukf_A 99.8 2.5e-25 6.6e-30 187.7 >1ukf_A Avirulence protein AVRPPH3; AVRPPHB, hypersensitive response, hydrolase; 1.35A {Pseudomonas syringae PV} SCOP: d.3.1.10 10.1073/pnas.2036536100
PVClopt17 PAK_2075 PAK_01880 1t3c 1t3c_A 93.5 0.0089 2.3e-07 65.9 >1t3c_A Neurotoxin type E; catalytic domain, E212Q mutant, light chain, hydrolase; 1.90A {Clostridium botulinum} SCOP: d.92.1.7 PDB: 3d3x_A 1t3a_A 1zl5_A 1zl6_A 1zn3_A 1zkw_A 1zkx_A 10.1021/bi036278w
PVCunit1_1 PAK_2876 PAK_02606 3eaa 3eaa_A 73.2 1.2 3.1e-05 30.8 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVCunit1_2 PAK_2877 PAK_02607 3j9q 3j9q_A 100.0 3.8e-34 1e-38 242.1 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit1_3 PAK_2878 PAK_02608 3j9q 3j9q_A 100.0 6.9e-34 1.8e-38 247.8 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit1_4 PAK_2879 PAK_02609 3j9q 3j9q_A 99.9 6.1e-30 1.6e-34 219.4 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit1_5 PAK_2880 PAK_02610 4tv4 4tv4_A 63.0 2.7 7e-05 30.4 >4tv4_A Uncharacterized protein; unknown function, ssgcid, virulence, structural genomics; 2.10A {Burkholderia pseudomallei} No DOI found.
PVCunit1_6 PAK_2881 PAK_02611 4yci 4yci_A 66.4 2.1 5.4e-05 26.8 >4yci_A Bone morphogenetic protein 9 growth factor domain; Pro-BMP complex, transforming growth factor-beta cytokine; HET: NAG; 3.25A {Mus musculus} PDB: 4ycg_A* 10.1073/pnas.1501303112
PVCunit1_7 PAK_2882 PAK_02612 5a3a 5a3a_A 54.5 4.8 0.00012 32.0 >5a3a_A SIR2 family protein; transferase, P-ribosyltransferase, metalloprotein, NAD-depen lipoylation, regulatory enzyme, rossmann fold; 1.54A {Streptococcus pyogenes} PDB: 5a3b_A* 5a3c_A* 10.1016/j.molcel.2015.06.013
PVCunit1_8 PAK_2883 PAK_02613 4uhv 4uhv_A 99.9 2.4e-30 6.4e-35 247.1 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVCunit1_9 PAK_2884 PAK_02614 2ia7 2ia7_A 99.7 1e-21 2.6e-26 131.7 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCunit1_10 PAK_2885 PAK_02615 1ngv 1ngv_A 43.2 9.4 0.00025 31.0 >1ngv_A Amyloid beta precursor protein-binding protein 1; signaling protein; 2.60A {Homo sapiens} PDB: 3gzn_A* 1yov_A 2nvu_A* 1r4m_A 1r4n_A* 1tt5_A 3dbh_A 3dbl_A 3dbr_A Key error. ID likely deprecated.
PVCunit1_11 PAK_2886 PAK_02616 3h2t 3h2t_A 96.6 1.9e-05 4.9e-10 79.9 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCunit1_12 PAK_2887 PAK_02617 1s5u 1s5u_A 40.5 11 0.00029 29.0 >1s5u_A Protein YBGC; structural genomics, hypothetical protein, thioesterase fold, PSI, protein structure initiative; 1.70A {Escherichia coli} SCOP: d.38.1.1 PDB: 5kl9_A* 5t07_A* 5t06_A* No DOI found.
PVCunit1_13 PAK_2888 PAK_02618 3izo 3izo_F 98.9 5.7e-13 1.5e-17 133.9 >3izo_F Fiber; pentameric penton base, trimeri viral protein; 3.60A {Human adenovirus 5} 10.1016/j.jmb.2010.11.043
PVCunit1_14 PAK_2889 PAK_02619 1ojh 1ojh_A 20.8 41.0 0.0011 26.2 >1ojh_A NBLA; degradation protein, phycobilisome degradation, protein BIND; HET: MSE; 1.80A {Anabaena SP} SCOP: a.214.1.1 10.1074/jbc.M507243200
PVCunit1_15 PAK_2890 PAK_02620 5e7p 5e7p_A 99.9 1.8e-26 4.6e-31 233.6 >5e7p_A Cell division control protein CDC48; AAA ATPase, M. smegmatic, RECA, hydrolase; HET: ADP PG4 PGE; 2.51A {Mycobacterium smegmatis} 10.1128/JB.00905-15
PVCunit1_16 PAK_2891 PAK_02621 5fvk 5fvk_C 25.4 29.0 0.00076 20.8 >5fvk_C VFA1, VPS4-associated protein 1; hydrolase, MIT domain, yeast, ATPase; 1.66A {Saccharomyces cerevisiae} PDB: 4niq_C 10.1016/j.jmb.2016.04.007
PVCunit1_17 PAK_2892 PAK_02622 1cii 1cii_A 63.2 2.7 6.9e-05 41.7 >1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1 10.1038/385461a0
PVCunit1_18 PAK_2893 PAK_02623 3mfx 3mfx_A 51.3 5.8 0.00015 23.5 >3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis} No DOI found.
PVCunit1_19 PAK_2894 PAK_02624 3fnb 3fnb_A 74.6 1.0 2.7e-05 35.5 >3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix bundle, structural genomics protein structure initiative; HET: PGE; 2.12A {Streptococcus mutans} No DOI found.
PVCunit1_20 PAK_2895 PAK_02625 1ocy 1ocy_A 97.2 1.6e-06 4.1e-11 65.1 >1ocy_A Bacteriophage T4 short tail fibre; structural protein, fibrous protein, LIPO-polysaccharide binding, bacteriophage structural protein; HET: CIT; 1.5A {Bacteriophage T4} SCOP: d.231.1.1 10.1016/S0022-2836(03)00755-1
PVCunit1_21 PAK_2896 PAK_02626 1vyy 1vyy_A 100.0 5.8e-35 1.5e-39 231.2 >1vyy_A Lectin; sugar-binding protein, D-mannose, plant pathogen; HET: BMA MAN; 1.00A {Ralstonia solanacearum} PDB: 1uqx_A* 2chh_A* Key error. ID likely deprecated.
PVCcif1 plu2531 PLT_02568 3jqo 3jqo_B 47.2 7.4 0.00019 27.7 >3jqo_B TRAO protein; helical outer membrane TM, outer membrane protein complex, T protein; HET: LDA; 2.60A {Escherichia coli} PDB: 3zbi_B 2ofq_A 10.1038/nature08588
PVCcif2 plu2530 PLT_02567 3j9q 3j9q_A 99.9 1.5e-31 4e-36 226.6 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCcif3 plu2529 PLT_02566 3j9q 3j9q_A 100.0 3.8e-36 9.8e-41 262.4 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCcif4 plu2528 PLT_02565 3j9q 3j9q_A 99.9 2.2e-28 5.7e-33 209.6 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCcif5 plu2527 PLT_02564 4tv4 4tv4_A 68.0 1.8 4.8e-05 31.3 >4tv4_A Uncharacterized protein; unknown function, ssgcid, virulence, structural genomics; 2.10A {Burkholderia pseudomallei} No DOI found.
PVCcif6 plu2526 PLT_02563 1use 1use_A 63.2 2.7 6.9e-05 23.2 >1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A 10.1073/pnas.0403069101
PVCcif7 plu2525 PLT_02562 4bs6 4bs6_A 22.6 35 0.00092 24.5 >4bs6_A Cathepsin S; hydrolase, cysteine protease, covalent ligand; HET: JG7; 1.20A {Mus musculus} PDB: 4bpv_A* 4bqv_A* 4bs5_A* 4bsq_A* 4mzo_A* 4mzs_A* 4p6e_A* 2h7j_A* 2f1g_A* 2hh5_B* 2hhn_A* 2hxz_A* 2op3_A* 1ms6_A* 2r9m_A* 2r9n_A* 2r9o_A* 3n3g_A* 3n4c_A* 4p6g_A* 3ovx_A* 2frq_A* 2fra_A* 2fq9_A* 2ft2_A* 2fud_A* 2g7y_A* 1nqc_A* 1npz_A* 2g6d_A* ... No DOI found.
PVCcif8 plu2524 PLT_02561 4uhv 4uhv_A 99.9 3.3e-27 8.6e-32 225.6 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVCcif9 plu2523 PLT_02560 2ia7 2ia7_A 99.8 5.4e-25 1.4e-29 146.2 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCcif10 plu2522 PLT_02559 4jiw 4jiw_D 77.4 0.75 2e-05 28.8 >4jiw_D C1882, putative uncharacterized protein; PAAR-repeat motif, membrane piercing, type VI secretion SYST spike, cell puncturing device, beta-helix; 3.40A {Escherichia coli} 10.1038/nature12453
PVCcif11 plu2521 PLT_02558 3h2t 3h2t_A 96.6 2.6e-05 6.7e-10 79.0 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCcif12 plu2520 PLT_02557 1fho 1fho_A 64.0 2.5 6.5e-05 33.9 >1fho_A UNC-89; pleckstrin homology domain, electrostatics, muscle, signal transduction, signaling protein; NMR {Caenorhabditis elegans} SCOP: b.55.1.1 10.1016/S0969-2126(00)00509-8
PVCcif13 plu2519 PLT_02556 2xgf 2xgf_A 96.8 1.2e-05 3e-10 70.6 >2xgf_A Long tail fiber protein P37; viral protein; 2.20A {Enterobacteria phage T4} 10.1073/pnas.1011218107
PVCcif14 plu2518 PLT_02555 3b1j 3b1j_C 41.9 10 0.00027 26.0 >3b1j_C CP12; alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_C* 10.1016/j.str.2011.08.016
PVCcif15 plu2517 PLT_02554 5e7p 5e7p_A 99.9 3.4e-27 8.9e-32 238.8 >5e7p_A Cell division control protein CDC48; AAA ATPase, M. smegmatic, RECA, hydrolase; HET: ADP PG4 PGE; 2.51A {Mycobacterium smegmatis} 10.1128/JB.00905-15
PVCcif16 plu2516 PLT_02553 1u1j 1u1j_A 39.0 12 0.00032 35.6 >1u1j_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; methionine, synthase, methyltetrahydrofolate; HET: C2F; 2.40A {Arabidopsis thaliana} SCOP: c.1.22.2 c.1.22.2 PDB: 1u1h_A* 1u1u_A 1u22_A* 10.1074/jbc.C400325200
PVCcif17 plu2515 PLT_02552 4fbj 4fbj_A 100.0 3e-109 7e-114 735.1 >4fbj_A CIF, hypothetical protein; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Photorhabdus luminescens subsp} PDB: 3gqj_A No DOI found.
PVCcif18 plu2514 PLT_02551 3wmi 3wmi_B 20.6 41 0.0011 24.0 >3wmi_B EIAV GP45 wild type; alpha-helix, virus fusion, viral protein; 1.90A {Equine} PDB: 3wmj_B No DOI found.
PVClopt1 plu2385 PLT_02424 3eaa 3eaa_A 82.7 0.37 9.5e-06 33.4 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVClopt2 plu2386 PLT_02425 3j9q 3j9q_A 99.9 4.2e-33 1.1e-37 235.7 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClopt3 plu2387 PLT_02426 3j9q 3j9q_A 100.0 4.1e-34 1.1e-38 247.2 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClopt4 plu2388 PLT_02427 3j9q 3j9q_A 99.9 5.2e-31 1.3e-35 225.1 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClopt5 plu2389 PLT_02428 4tv4 4tv4_A 66.1 2.1 5.6e-05 30.9 >4tv4_A Uncharacterized protein; unknown function, ssgcid, virulence, structural genomics; 2.10A {Burkholderia pseudomallei} No DOI found.
PVClopt6 plu2390 PLT_02429 4zmk 4zmk_A 51.9 5.6 0.00015 24.7 >4zmk_A Telomere length regulator TAZ1; dimerization domain, fission yeast, DNA binding PR; 1.50A {Schizosaccharomyces pombe} 10.1038/cr.2015.76
PVClopt7 plu2391 PLT_02430 5a3a 5a3a_A 48.7 6.8 0.00018 31.1 >5a3a_A SIR2 family protein; transferase, P-ribosyltransferase, metalloprotein, NAD-depen lipoylation, regulatory enzyme, rossmann fold; 1.54A {Streptococcus pyogenes} PDB: 5a3b_A* 5a3c_A* 10.1016/j.molcel.2015.06.013
PVClopt8 plu2392 PLT_02431 4uhv 4uhv_A 99.9 3.8e-31 1e-35 252.7 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVClopt9 plu2393 PLT_02432 2ia7 2ia7_A 99.8 1.1e-23 2.7e-28 140.3 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVClopt10 plu2394 PLT_02433 4jiw 4jiw_D 61.0 3.1 8.1e-05 26.0 >4jiw_D C1882, putative uncharacterized protein; PAAR-repeat motif, membrane piercing, type VI secretion SYST spike, cell puncturing device, beta-helix; 3.40A {Escherichia coli} 10.1038/nature12453
PVClopt11 plu2395 PLT_02434 3h2t 3h2t_A 97.5 2.7e-07 7.1e-12 96.6 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVClopt12 plu2396 PLT_02435 1pqx 1pqx_A 49.6 6.5 0.00017 33.3 >1pqx_A Conserved hypothetical protein; ZR18,structure, autostructure,spins,autoassign, northeast structural genomics consortium; NMR {Staphylococcus aureus subsp} SCOP: d.267.1.1 PDB: 2ffm_A 2m6q_A 2m8w_A No DOI found.
PVClopt13 plu2397 PLT_02436 2j9w 2j9w_A 27.5 25 0.00065 28.7 >2j9w_A VPS28, VPS28-PROV protein; NZF finger, HIV budding, protein transport; 1.30A {Xenopus laevis} 10.1038/sj.emboj.7601501
PVClopt14 plu2398 PLT_02437 5e7p 5e7p_A 99.9 4.6e-27 1.2e-31 237.8 >5e7p_A Cell division control protein CDC48; AAA ATPase, M. smegmatic, RECA, hydrolase; HET: ADP PG4 PGE; 2.51A {Mycobacterium smegmatis} 10.1128/JB.00905-15
PVClopt15 plu2399 PLT_02438 3b33 3b33_A 21.2 40.0 0.001 18.4 >3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633} No DOI found.
PVClopt16 plu2400 PLT_02439 2ebf 2ebf_X 100.0 1.6e-85 4.1e-90 674.4 >2ebf_X Dermonecrotic toxin; pasteurella multocida toxin, trojan horse-like fold; HET: TRE; 1.90A {Pasteurella multocida} SCOP: a.296.1.1 c.150.1.2 d.3.1.17 PDB: 2ec5_A 2ebh_X* 10.1073/pnas.0608197104
PVClopt17 plu2401 PLT_02440 1ukf 1ukf_A 99.8 1.6e-25 4.2e-30 188.8 >1ukf_A Avirulence protein AVRPPH3; AVRPPHB, hypersensitive response, hydrolase; 1.35A {Pseudomonas syringae PV} SCOP: d.3.1.10 10.1073/pnas.2036536100
PVCunit1_1 plu1730 PLT_01758 3eaa 3eaa_A 77.0 0.79 2.1e-05 31.7 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVCunit1_2 plu1729 PLT_01757 3j9q 3j9q_A 100.0 2.6e-35 6.7e-40 248.9 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit1_3 plu1728 PLT_01756 3j9q 3j9q_A 100.0 8.6e-34 2.2e-38 247.3 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit1_4 plu1727 PLT_01755 3j9q 3j9q_A 99.9 2.5e-29 6.6e-34 215.0 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit1_5 plu1726 PLT_01754 3eaa 3eaa_A 82.2 0.39 1e-05 33.3 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVCunit1_6 plu1725 PLT_01753 1use 1use_A 58.6 3.7 9.6e-05 22.6 >1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A 10.1073/pnas.0403069101
PVCunit1_7 plu1724 PLT_01752 1avo 1avo_B 32.8 18 0.00046 27.2 >1avo_B 11S regulator; proteasome activator, cell adhesion, interferon induction; 2.80A {Homo sapiens} SCOP: a.24.8.1 10.1038/37670
PVCunit1_8 plu1723 PLT_01751 4uhv 4uhv_A 99.9 4e-29 1e-33 238.8 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVCunit1_9 plu1722 PLT_01750 2ia7 2ia7_A 99.2 2.9e-15 7.7e-20 106.9 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCunit1_10 plu1721 PLT_01749 2fwm 2fwm_X 33.8 17 0.00043 23.1 >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossmann fold, chorismate metabolism, short-CH oxidoreductase, tetramer; 2.00A {Escherichia coli} 10.1107/S0907444906015824
PVCunit1_11 plu1720 PLT_01748 3h2t 3h2t_A 96.0 0.00015 4e-09 73.4 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCunit1_12 plu1719 PLT_01747 1pqx 1pqx_A 53.4 5.1 0.00013 33.8 >1pqx_A Conserved hypothetical protein; ZR18,structure, autostructure,spins,autoassign, northeast structural genomics consortium; NMR {Staphylococcus aureus subsp} SCOP: d.267.1.1 PDB: 2ffm_A 2m6q_A 2m8w_A No DOI found.
PVCunit1_13 plu1718 PLT_01746 1ocy 1ocy_A 98.0 9.6e-09 2.5e-13 86.7 >1ocy_A Bacteriophage T4 short tail fibre; structural protein, fibrous protein, LIPO-polysaccharide binding, bacteriophage structural protein; HET: CIT; 1.5A {Bacteriophage T4} SCOP: d.231.1.1 10.1016/S0022-2836(03)00755-1
PVCunit1_14 plu1717 PLT_01745 5l3x 5l3x_B 17.9 52.0 0.0013 32.1 >5l3x_B Negative elongation factor C/D; transcription, repressor, transcription regulation, gene EXP; 2.75A {Homo sapiens} 10.7554/eLife.14981
PVCunit1_15 plu1716 PLT_01744 5e7p 5e7p_A 99.8 2.9e-25 7.6e-30 224.7 >5e7p_A Cell division control protein CDC48; AAA ATPase, M. smegmatic, RECA, hydrolase; HET: ADP PG4 PGE; 2.51A {Mycobacterium smegmatis} 10.1128/JB.00905-15
PVCunit1_16 plu1715 PLT_01743 1vwx 1vwx_f 22.5 36 0.00093 27.1 >1vwx_f Ribosomal protein EL33; mammalian, ribosome; 3.40A {Sus scrofa} PDB: 1vwz_f 1vx1_f 1vx4_f 3j3b_f 4cxd_f 4upx_f 4uq1_f 4w20_f 4w22_f 4w25_f 4w27_f Key error. ID likely deprecated.
PVCunit1_17 plu1714 PLT_01742 1eb6 1eb6_A 82.4 0.38 1e-05 31.5 >1eb6_A Neutral protease II; metalloproteinase, zinc, hydrolase; 1.0A {Aspergillus oryzae} SCOP: d.92.1.12 10.1107/S090744490101335X
PVCunit1_18 plu1713 PLT_01741 2hwn 2hwn_E 27.0 26 0.00068 21.9 >2hwn_E A kinase binding peptide; PKA, AKAP, dimerization/docking, D/D, regulatory subunit, TR; 1.60A {Rattus norvegicus} 10.1016/j.molcel.2006.09.015
PVCunit1_19 plu1712 PLT_01740 1yrt 1yrt_A 98.1 2.8e-09 7.3e-14 98.9 >1yrt_A Bifunctional hemolysin-adenylate cyclase; CYAA, layse, toxin; 2.10A {Bordetella pertussis} PDB: 1yru_A 1zot_A* 2col_A 10.1038/sj.emboj.7600800
PVCunit2_1 plu1708 PLT_01736 3eaa 3eaa_A 69.5 1.6 4.2e-05 30.1 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVCunit2_2 plu1707 PLT_01735 3j9q 3j9q_A 100.0 1.2e-33 3.2e-38 239.0 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit2_3 plu1706 PLT_01734 3j9q 3j9q_A 100.0 1.6e-34 4.3e-39 253.7 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit2_4 plu1705 PLT_01733 3j9q 3j9q_A 99.9 7.2e-30 1.9e-34 219.0 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit2_5 plu1704 PLT_01732 4etv 4etv_A 39.0 12 0.00032 27.6 >4etv_A Ryanodine receptor 2; phosphorylation, cardiac, metal transport; 1.65A {Mus musculus} 10.1016/j.str.2012.04.015
PVCunit2_6 plu1703 PLT_01731 4e71 4e71_A 53.7 5.0 0.00013 24.5 >4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens} No DOI found.
PVCunit2_7 plu1702 PLT_01730 5a3a 5a3a_A 64.0 2.5 6.6e-05 33.5 >5a3a_A SIR2 family protein; transferase, P-ribosyltransferase, metalloprotein, NAD-depen lipoylation, regulatory enzyme, rossmann fold; 1.54A {Streptococcus pyogenes} PDB: 5a3b_A* 5a3c_A* 10.1016/j.molcel.2015.06.013
PVCunit2_8 plu1701 PLT_01729 4uhv 4uhv_A 99.9 2.2e-30 5.8e-35 247.3 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVCunit2_9 plu1700 PLT_01728 2ia7 2ia7_A 99.7 1.1e-22 2.9e-27 138.2 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCunit2_10 plu1699 PLT_01727 2k4r 2k4r_A 34.4 16 0.00042 21.1 >2k4r_A Neurotrypsin; kringle domain, disulfide-rich protein fold, serine endopeptidase, hydrolase, extracellular proteolysis; NMR {Rattus norvegicus} PDB: 2k51_A 10.1021/bi800555z
PVCunit2_11 plu1698 PLT_01726 3h2t 3h2t_A 96.8 8e-06 2.1e-10 82.6 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCunit2_12 plu1697 PLT_01725 3sok 3sok_A 25.8 28.0 0.00073 29.3 >3sok_A Fimbrial protein; pilus subunit, extracellular, cell adhesion; 2.30A {Dichelobacter nodosus} 10.1074/jbc.M111.297242
PVCunit2_13 plu1696 PLT_01724 3izo 3izo_F 98.4 3.3e-10 8.5e-15 108.7 >3izo_F Fiber; pentameric penton base, trimeri viral protein; 3.60A {Human adenovirus 5} 10.1016/j.jmb.2010.11.043
PVCunit2_14 plu1695 PLT_01723 4u7b 4u7b_A 99.8 2e-23 5.3e-28 167.0 >4u7b_A Mariner MOS1 transposase; transposon synaptic complex, helix-turn-helix, like fold, DNA transposition, hydrolase-DNA complex; HET: DNA; 3.09A {Drosophila mauritiana} PDB: 4r79_A 3hos_A* 3hot_A 10.1093/nar/gkv096
PVCunit2_15 plu1694 PLT_01722 2mdp 2mdp_A 23.8 32.0 0.00085 28.7 >2mdp_A Gene 1.2 protein; dntpase inhibitor, viral protein; NMR {Enterobacteria phage T7} No DOI found.
PVCunit2_16 plu1693 PLT_01721 5e7p 5e7p_A 99.8 7.7e-26 2e-30 228.7 >5e7p_A Cell division control protein CDC48; AAA ATPase, M. smegmatic, RECA, hydrolase; HET: ADP PG4 PGE; 2.51A {Mycobacterium smegmatis} 10.1128/JB.00905-15
PVCunit2_17 plu1692 PLT_01720 3ggm 3ggm_A 54.2 4.9 0.00013 26.2 >3ggm_A Uncharacterized protein BT9727_2919; bacillus cereus group., structural genomics, PSI-2, protein structure initiative; 2.00A {Bacillus thuringiensis serovarkonkukian} No DOI found.
PVCunit2_18 plu1691 PLT_01719 3u8p 3u8p_A 21.9 37.0 0.00097 31.6 >3u8p_A Cytochrome B562 integral fusion with enhanced GRE fluorescent protein; directed evolution, domain insertion, energy transfer, fluor quenching; HET: CRO HEM; 2.75A {Aequorea victoria} 10.1021/ja301987h
PVCunit2_19 plu1690 PLT_01718 2rio 2rio_A 79.3 0.6 1.6e-05 29.0 >2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* 10.1016/j.cell.2007.10.057
PVCunit2_20 plu1689 PLT_01717 2lqt 2lqt_A 37.7 13 0.00034 28.2 >2lqt_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 7; CHCH domain, mitochondrial import, alpha-hairpin, MIA40-DEPE disulfide relay system; NMR {Homo sapiens} 10.1016/j.jsb.2012.07.007
PVCunit3_1 plu1689 PLT_01716 1l4i 1l4i_A 69.3 1.7 4.3e-05 30.5 >1l4i_A SFAE protein; periplasmic chaperone, immunoglobulin fold; 2.20A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 10.1107/S0907444902005954
PVCunit3_2 plu1688 PLT_01715 3j9q 3j9q_A 100.0 8.9e-34 2.3e-38 240.0 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit3_3 plu1687 PLT_01714 3j9q 3j9q_A 100.0 3.8e-34 1e-38 249.4 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit3_4 plu1686 PLT_01713 3j9q 3j9q_A 99.9 9.2e-29 2.4e-33 211.5 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit3_5 plu1685 PLT_01712 4tv4 4tv4_A 61.4 3.0 7.9e-05 30.2 >4tv4_A Uncharacterized protein; unknown function, ssgcid, virulence, structural genomics; 2.10A {Burkholderia pseudomallei} No DOI found.
PVCunit3_6 plu1684 PLT_01711 1x8d 1x8d_A 72.3 1.3 3.3e-05 26.0 >1x8d_A Hypothetical protein YIIL; mutarotase, L-rhamnose, biosynthetic protein; HET: RNS; 1.80A {Escherichia coli} SCOP: d.58.4.21 10.1016/j.jmb.2005.03.047
PVCunit3_7 plu1683 PLT_01710 1avo 1avo_B 30.8 20 0.00052 26.9 >1avo_B 11S regulator; proteasome activator, cell adhesion, interferon induction; 2.80A {Homo sapiens} SCOP: a.24.8.1 10.1038/37670
PVCunit3_8 plu1682 PLT_01709 4uhv 4uhv_A 99.9 9.8e-29 2.5e-33 236.1 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVCunit3_9 plu1681 PLT_01708 2ia7 2ia7_A 99.7 9e-21 2.4e-25 127.1 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCunit3_10 plu1680 PLT_01707 4rnd 4rnd_B 32.1 18 0.00048 24.5 >4rnd_B V-type proton ATPase subunit F; alpha helical, rossmann fold, hydrolase, regulatory, couplin; 3.18A {Saccharomyces cerevisiae S288C} PDB: 3j9u_N 3j9v_N 3j9t_N 5d80_o 10.1074/jbc.M114.622688
PVCunit3_11 plu1679 PLT_01706 3h2t 3h2t_A 96.0 0.00014 3.8e-09 73.6 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCunit3_12 plu1678 PLT_01705 5a9c 5a9c_A 33.6 17 0.00044 36.7 >5a9c_A Polyhedrin; viral protein, insect virus occlusion BODY, microcrystal; 1.71A {Antheraea mylitta cypovirus 4} 10.1016/j.jsb.2015.08.009
PVCunit3_13 plu1677 PLT_01704 1ocy 1ocy_A 96.8 1.2e-05 3.1e-10 66.1 >1ocy_A Bacteriophage T4 short tail fibre; structural protein, fibrous protein, LIPO-polysaccharide binding, bacteriophage structural protein; HET: CIT; 1.5A {Bacteriophage T4} SCOP: d.231.1.1 10.1016/S0022-2836(03)00755-1
PVCunit3_14 plu1676 PLT_01703 2qcp 2qcp_X 18.9 48.0 0.0012 25.7 >2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X 10.1110/ps.073021307
PVCunit3_15 plu1675 PLT_01702 5e7p 5e7p_A 99.9 8.1e-27 2.1e-31 236.0 >5e7p_A Cell division control protein CDC48; AAA ATPase, M. smegmatic, RECA, hydrolase; HET: ADP PG4 PGE; 2.51A {Mycobacterium smegmatis} 10.1128/JB.00905-15
PVCunit3_16 plu1674 PLT_01701 4faz 4faz_A 33.5 17 0.00044 20.9 >4faz_A 4-oxalocrotonate isomerase protein; alpha/beta fold, tautomerase; 1.57A {Methylibium petroleiphilum} 10.1016/j.abb.2013.06.016
PVCunit3_17 plu1673 PLT_01700 1vwx 1vwx_f 46.3 7.9 0.00021 26.0 >1vwx_f Ribosomal protein EL33; mammalian, ribosome; 3.40A {Sus scrofa} PDB: 1vwz_f 1vx1_f 1vx4_f 3j3b_f 4cxd_f 4upx_f 4uq1_f 4w20_f 4w22_f 4w25_f 4w27_f Key error. ID likely deprecated.
PVCunit3_18 plu1672 PLT_01699 1wyp 1wyp_A 23.3 34 0.00088 25.8 >1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} No DOI found.
PVCunit3_19 plu1671 PLT_01698 2a7o 2a7o_A 21.3 39 0.001 26.3 >2a7o_A Huntingtin interacting protein B; SRI domain, SRI, HSRI, SET2, HSET2, phosphoctd associating protein, SET2 RPB1-interacting domain, PCID, PCAP; NMR {Homo sapiens} 10.1073/pnas.0506350102
PVCunit4_1 plu1667 PLT_01696 3eaa 3eaa_A 74.4 1.0 2.7e-05 31.1 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVCunit4_2 plu1666 PLT_01695 3j9q 3j9q_A 100.0 1.4e-33 3.8e-38 238.7 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit4_3 plu1665 PLT_01694 3j9q 3j9q_A 100.0 6.2e-35 1.6e-39 255.3 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit4_4 plu1664 PLT_01693 3j9q 3j9q_A 99.9 9.4e-30 2.5e-34 218.9 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit4_5 plu1663 PLT_01692 4tv4 4tv4_A 69.4 1.6 4.3e-05 31.6 >4tv4_A Uncharacterized protein; unknown function, ssgcid, virulence, structural genomics; 2.10A {Burkholderia pseudomallei} No DOI found.
PVCunit4_6 plu1662 PLT_01691 3hk4 3hk4_A 45.6 8.2 0.00021 20.2 >3hk4_A MLR7391 protein; NTF2-like protein, structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, lyase; HET: MSE; 1.96A {Mesorhizobium loti} No DOI found.
PVCunit4_7 plu1661 PLT_01690 5a3a 5a3a_A 47.6 7.3 0.00019 30.9 >5a3a_A SIR2 family protein; transferase, P-ribosyltransferase, metalloprotein, NAD-depen lipoylation, regulatory enzyme, rossmann fold; 1.54A {Streptococcus pyogenes} PDB: 5a3b_A* 5a3c_A* 10.1016/j.molcel.2015.06.013
PVCunit4_8 plu1660 PLT_01689 4uhv 4uhv_A 99.9 1.8e-31 4.7e-36 254.9 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVCunit4_9 plu1659 PLT_01688 2ia7 2ia7_A 99.7 4.8e-22 1.3e-26 135.0 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCunit4_10 plu1658 PLT_01687 2k4r 2k4r_A 30.7 20 0.00053 20.7 >2k4r_A Neurotrypsin; kringle domain, disulfide-rich protein fold, serine endopeptidase, hydrolase, extracellular proteolysis; NMR {Rattus norvegicus} PDB: 2k51_A 10.1021/bi800555z
PVCunit4_11 plu1657 PLT_01686 3h2t 3h2t_A 96.6 2.6e-05 6.8e-10 78.9 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCunit4_12 plu1656 PLT_01685 3p9y 3p9y_A 33.1 17.0 0.00045 36.4 >3p9y_A CG14216, LD40846P; phosphatase, CIS proline, LMW PTP-like fold, RNA polymerase hydrolase; HET: N7P SEP SET IMD PG4; 2.10A {Drosophila melanogaster} PDB: 4imi_B* 4imj_B* 4ygx_B* 3fdf_A 3fmv_A 3omx_A 3omw_A 10.1074/jbc.M110.197129
PVCunit4_13 plu1655 PLT_01684 1ocy 1ocy_A 98.1 3.8e-09 9.9e-14 88.4 >1ocy_A Bacteriophage T4 short tail fibre; structural protein, fibrous protein, LIPO-polysaccharide binding, bacteriophage structural protein; HET: CIT; 1.5A {Bacteriophage T4} SCOP: d.231.1.1 10.1016/S0022-2836(03)00755-1
PVCunit4_14 plu1654 PLT_01683 2kx7 2kx7_A 33.4 17.0 0.00044 31.7 >2kx7_A Sensor-like histidine kinase YOJN; alpha-beta-loop (ABL) domain, phosphotransfer, RCS regulatio two-component system, protein binding; NMR {Escherichia coli} 10.1016/j.str.2011.01.012
PVCunit4_15 plu1653 PLT_01682 5e7p 5e7p_A 99.8 3.5e-25 9e-30 224.4 >5e7p_A Cell division control protein CDC48; AAA ATPase, M. smegmatic, RECA, hydrolase; HET: ADP PG4 PGE; 2.51A {Mycobacterium smegmatis} 10.1128/JB.00905-15
PVCunit4_16 plu1652 PLT_01681 4p7x 4p7x_A 18.4 50.0 0.0013 28.5 >4p7x_A P4H, L-proline CIS-4-hydroxylase; HET: AKG CXS; 1.30A {Rhizobium loti} PDB: 4p7w_A* 10.1021/sb500247a
PVCunit4_17 plu1651 PLT_01680 2yy0 2yy0_A 42.7 9.7 0.00025 26.4 >2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens} No DOI found.
PVCpnf1 PAU_03353 PAU_03392 3eaa 3eaa_A 62.9 2.7 7.1e-05 29.0 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVCpnf2 PAU_03352 PAU_03391 3j9q 3j9q_A 100.0 2e-34 5.3e-39 243.5 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCpnf3 PAU_03351 PAU_03390 3j9q 3j9q_A 99.9 4e-33 1e-37 241.7 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCpnf4 PAU_03350 PAU_03389 3j9q 3j9q_A 99.8 6.5e-26 1.7e-30 195.0 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCpnf5 PAU_03349 PAU_03388 3eaa 3eaa_A 92.7 0.017 4.4e-07 40.3 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVCpnf6 PAU_03348 PAU_03387 4aaa 4aaa_A 78.2 0.68 1.8e-05 28.3 >4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A* No DOI found.
PVCpnf7 PAU_03347 PAU_03386 2v6x 2v6x_B 36.8 14 0.00036 26.4 >2v6x_B DOA4-independent degradation protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae} 10.1038/nature06171
PVCpnf8 PAU_03346 PAU_03385 4uhv 4uhv_A 99.9 8.2e-29 2.1e-33 236.9 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVCpnf9 PAU_03345 PAU_03384 2ia7 2ia7_A 99.7 1e-21 2.6e-26 130.8 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCpnf10 PAU_03344 PAU_03383 1ukf 1ukf_A 82.0 0.4 1.1e-05 36.7 >1ukf_A Avirulence protein AVRPPH3; AVRPPHB, hypersensitive response, hydrolase; 1.35A {Pseudomonas syringae PV} SCOP: d.3.1.10 10.1073/pnas.2036536100
PVCpnf11 PAU_03343 PAU_03382 3h2t 3h2t_A 97.4 4.4e-07 1.2e-11 89.7 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCpnf12 PAU_03342 PAU_03381 2ex2 2ex2_A 39.3 12.0 0.00031 38.0 >2ex2_A Penicillin-binding protein 4; cephem, penem, D-Ala alanine-carboxypeptidase, D-alanyl-D-alanine-endopeptidase, hydrolase; 1.55A {Escherichia coli} SCOP: e.3.1.3 PDB: 2ex6_A* 2ex8_A* 2ex9_A* 2exa_A* 2exb_A* 10.1021/bi051533t
PVCpnf13 PAU_03341 PAU_03380 3izo 3izo_F 98.1 2.8e-09 7.3e-14 107.6 >3izo_F Fiber; pentameric penton base, trimeri viral protein; 3.60A {Human adenovirus 5} 10.1016/j.jmb.2010.11.043
PVCpnf14 PAU_03340 PAU_03379 3c9p 3c9p_A 32.4 18 0.00047 32.2 >3c9p_A Uncharacterized protein SP1917; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 1.96A {Streptococcus pneumoniae} No DOI found.
PVCpnf15 PAU_03339 PAU_03378 5g4f 5g4f_A 99.9 2.1e-26 5.5e-31 222.3 >5g4f_A VCP-like ATPase; hydrolase, VAT, proteasome, protein dynamics, unfoldase, conformations, AAA ATPase; 7.00A {Thermoplasma acidophilum} PDB: 5g4g_A 1cz4_A 1cz5_A 10.1073/pnas.1603980113
PVCpnf16 PAU_03338 PAU_03377 5jbr 5jbr_A 29.2 22 0.00058 23.9 >5jbr_A Uncharacterized protein BCAV_2135; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 1.65A {Beutenbergia cavernae} No DOI found.
PVCpnf17 PAU_03337 PAU_03376 1yrt 1yrt_A 98.5 9e-11 2.4e-15 108.6 >1yrt_A Bifunctional hemolysin-adenylate cyclase; CYAA, layse, toxin; 2.10A {Bordetella pertussis} PDB: 1yru_A 1zot_A* 2col_A 10.1038/sj.emboj.7600800
PVCpnf18 PAU_03336 PAU_03375 5g4d 5g4d_A 60.4 3.2 8.5e-05 23.4 >5g4d_A CAS2, crispr-associated endoribonuclease CAS2; immune system, cripsr-CAS complex, adaptation; 1.70A {Thermococcus onnurineus} PDB: 4tno_A 2i0x_A 10.1002/pro.2981
PVCpnf19 PAU_03334 PAU_03374 3gqe 3gqe_A 62.7 2.7 7.2e-05 25.6 >3gqe_A Non-structural protein 3; macro domain, X domain, venezuelan equine encephalitis virus alphavirus; HET: BCN; 2.30A {Venezuelan equine encephalitis virus} PDB: 3gqo_A* 10.1128/JVI.00189-09
PVCpnf20 PAU_03333 PAU_03373 3fxq 3fxq_A 99.7 2.4e-21 6.3e-26 122.5 >3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A* 10.1111/j.1365-2958.2010.07043.x
PVCpnf21 PAU_03332 PAU_03372 1hq0 1hq0_A 100.0 1.1e-64 2.8e-69 458.4 >1hq0_A CNF1, cytotoxic necrotizing factor 1; beta sandwich, RHO deamidase, RHO transglutaminase, toxin; 1.83A {Escherichia coli} SCOP: d.194.1.1 PDB: 1hzg_A 10.1038/89610
PVCpnf22 PAU_03331 PAU_03371 2oyz 2oyz_A 62.7 2.8 7.2e-05 24.7 >2oyz_A UPF0345 protein VPA0057; unknown function, structural genomi 2, protein structure initiative, midwest center for structu genomics, MCSG; 1.71A {Vibrio parahaemolyticus} SCOP: b.82.1.22 No DOI found.
PVCpnf23 PAU_03330 PAU_03370 3hdf 3hdf_A 100.0 1.6e-41 4.1e-46 227.5 >3hdf_A Lysozyme; antimicrobial, bacteriolytic enzyme, glycosid hydrolase, late protein; 1.70A {Enterobacteria phage P21} 10.1038/nsmb.1681
PVCpnf24 PAU_03329 PAU_03369 3vp9 3vp9_A 61.6 3 7.8e-05 30.4 >3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A 10.1074/jbc.M112.369652
PVCcif1 PAU_01993 PAU_01961 3jqo 3jqo_B 41.5 10 0.00027 27.0 >3jqo_B TRAO protein; helical outer membrane TM, outer membrane protein complex, T protein; HET: LDA; 2.60A {Escherichia coli} PDB: 3zbi_B 2ofq_A 10.1038/nature08588
PVCcif2 PAU_01994 PAU_01962 3j9q 3j9q_A 99.9 4.5e-33 1.2e-37 236.1 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCcif3 PAU_01995 PAU_01963 3j9q 3j9q_A 99.9 1.3e-30 3.4e-35 228.9 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCcif4 PAU_01996 PAU_01964 3j9q 3j9q_A 99.9 9.7e-27 2.5e-31 199.5 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCcif5 PAU_01997 PAU_01965 4tv4 4tv4_A 57.2 4.0 0.0001 29.5 >4tv4_A Uncharacterized protein; unknown function, ssgcid, virulence, structural genomics; 2.10A {Burkholderia pseudomallei} No DOI found.
PVCcif6 PAU_01998 PAU_01966 3nyi 3nyi_A 42.8 9.7 0.00025 24.7 >3nyi_A FAT acid-binding protein; stearic acid, DEGV family protein, structural genomics, PSI- protein structure initiative; HET: STE; 1.90A {Eubacterium ventriosum} No DOI found.
PVCcif7 PAU_01999 PAU_01967 5a3a 5a3a_A 47.5 7.3 0.00019 30.9 >5a3a_A SIR2 family protein; transferase, P-ribosyltransferase, metalloprotein, NAD-depen lipoylation, regulatory enzyme, rossmann fold; 1.54A {Streptococcus pyogenes} PDB: 5a3b_A* 5a3c_A* 10.1016/j.molcel.2015.06.013
PVCcif8 PAU_02000 PAU_01968 4uhv 4uhv_A 99.9 1e-27 2.6e-32 229.1 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVCcif9 PAU_02001 PAU_01969 2ia7 2ia7_A 99.7 8.1e-22 2.1e-26 132.1 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCcif10 PAU_02002 PAU_01970 3dfz 3dfz_A 35.9 15 0.00038 26.2 >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} 10.1042/BJ20080785
PVCcif11 PAU_02003 PAU_01971 3h2t 3h2t_A 96.4 5.2e-05 1.4e-09 76.8 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCcif12 PAU_02004 PAU_01972 4orl 4orl_A 63.3 2.6 6.9e-05 37.5 >4orl_A Uncharacterized protein; PF16022 family, DUF4783, structural genomics, joint center F structural genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Bacteroides ovatus} No DOI found.
PVCcif13 PAU_02005 PAU_01973 1ocy 1ocy_A 98.4 2.3e-10 6e-15 91.7 >1ocy_A Bacteriophage T4 short tail fibre; structural protein, fibrous protein, LIPO-polysaccharide binding, bacteriophage structural protein; HET: CIT; 1.5A {Bacteriophage T4} SCOP: d.231.1.1 10.1016/S0022-2836(03)00755-1
PVCcif14 PAU_02006 PAU_01974 2d8r 2d8r_A 42.5 9.8 0.00026 29.1 >2d8r_A THAP domain-containing protein 2; NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.16 No DOI found.
PVCcif15 PAU_02007 PAU_01975 5e7p 5e7p_A 99.8 4.8e-26 1.3e-30 230.3 >5e7p_A Cell division control protein CDC48; AAA ATPase, M. smegmatic, RECA, hydrolase; HET: ADP PG4 PGE; 2.51A {Mycobacterium smegmatis} 10.1128/JB.00905-15
PVCcif16 PAU_02008 PAU_01976 4adx 4adx_G 38.8 12 0.00032 27.2 >4adx_G RPLX; ribosome, protein synthesis; 6.60A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2jxt_A 10.1016/j.jmb.2012.01.018
PVCcif17 PAU_02009 PAU_01977 4fbj 4fbj_A 100.0 4.2e-96 1e-100 648.7 >4fbj_A CIF, hypothetical protein; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Photorhabdus luminescens subsp} PDB: 3gqj_A No DOI found.
PVCcif18 PAU_02010 PAU_01978 2b9i 2b9i_C 28.4 24 0.00061 22.2 >2b9i_C MSG5, tyrosine-protein phosphatase MSG5; transferase; HET: ADP; 2.50A {Saccharomyces cerevisiae} 10.1016/j.molcel.2005.10.030
PVCcif19 PAU_02011 PAU_01979 2hxj 2hxj_A 61.1 3.1 8.1e-05 34.1 >2hxj_A Hypothetical protein; APC83807, structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.21A {Neisseria meningitidis MC58} SCOP: a.136.1.1 PDB: 3mw6_A Key error. ID likely deprecated.
PVCcif20 PAU_02012 PAU_01980 3gkn 3gkn_A 37.8 13 0.00034 22.7 >3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A 10.1016/j.jmb.2009.05.030
PVClumT1 PAU_02247 PAU_02206 3eaa 3eaa_A 61.3 3.0 7.9e-05 28.7 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVClumT2 PAU_02246 PAU_02205 3j9q 3j9q_A 99.9 8.1e-31 2.1e-35 228.3 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClumT3 PAU_02245 PAU_02204 3j9q 3j9q_A 99.9 2.8e-28 7.4e-33 208.3 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClumT4 PAU_02244 PAU_02203 3eaa 3eaa_A 52.9 5.3 0.00014 27.7 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVClumT5 PAU_02243 PAU_02202 1use 1use_A 67.8 1.9 4.9e-05 23.9 >1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A 10.1073/pnas.0403069101
PVClumT6 PAU_02242 PAU_02201 4v2x 4v2x_A 32.7 18.0 0.00047 31.3 >4v2x_A Endo-beta-1,4-glucanase (cellulase B); hydrolase, TRI-modular; 1.64A {Bacillus halodurans} 10.1074/jbc.M115.637827
PVClumT7 PAU_02241 PAU_02200 2p5z 2p5z_X 99.7 5.6e-22 1.5e-26 179.9 >2p5z_X Type VI secretion system component; structural genomics, unknown function, PSI-2, protein struct initiative; 2.60A {Escherichia coli O6} SCOP: b.40.8.1 b.106.1.1 b.106.1.1 10.1073/pnas.0813360106
PVClumT8 PAU_02240 PAU_02199 2ia7 2ia7_A 99.7 3.7e-22 9.6e-27 133.8 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVClumT9 afp10 PAU_02198 4jiv 4jiv_D 69.6 1.6 4.2e-05 27.5 >4jiv_D VCA0105, putative uncharacterized protein; PAAR-repeat motif, membrane piercing, type VI secretion SYST vibrio cholerae VGRG2; HET: PLM STE ELA; 1.90A {Vibrio cholerae o1 biovar eltor} 10.1038/nature12453
PVClumT10 afp11 PAU_02197 3h2t 3h2t_A 96.8 9.6e-06 2.5e-10 78.8 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVClumT11 PAU_02237 PAU_02196 1yo5 1yo5_C 39.5 12 0.00031 32.1 >1yo5_C SAM pointed domain containing ETS transcription factor; protein-DNA complex, double helix, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.4.5.21 10.1021/bi047352t
PVClumT12 PAU_02236 PAU_02195 1v1h 1v1h_A 97.7 9.4e-08 2.4e-12 71.3 >1v1h_A Fibritin, fiber protein; chimera; 1.9A {Human adenovirus type 2} SCOP: b.83.1.1 h.1.17.1 PDB: 1v1i_A 10.1016/j.jmb.2004.07.008
PVClumT13 PAU_02235 PAU_02194 1osn 1osn_A 41.0 11 0.00028 36.0 >1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1 10.1074/jbc.M302025200
PVClumT14 PAU_02234 PAU_02193 4uid 4uid_A 63.3 2.6 6.9e-05 31.3 >4uid_A S-layer SBSC, surface layer protein; sugar binding protein, G. stearothermophilus; 2.80A {Geobacillus stearothermophilus} No DOI found.
PVClumT15 PAU_02233 PAU_02192 1tdp 1tdp_A 22.1 37.0 0.00096 27.2 >1tdp_A Carnobacteriocin B2 immunity protein; four-helix bundle, antimicrobial protein; NMR {Carnobacterium maltaromaticum} SCOP: a.29.8.1 10.1021/bi048854+
PVClumT16 PAU_02232 PAU_02191 5ftj 5ftj_A 99.8 2.9e-25 7.6e-30 220.3 >5ftj_A Transitional endoplasmic reticulum ATPase; hydrolase, single-particle, AAA ATPase; HET: ADP OJA; 2.30A {Homo sapiens} PDB: 3cf1_A* 3cf3_A* 3cf2_A* 5ftk_A* 5ftl_A* 5ftm_A* 5ftn_A* 1r7r_A* 5c19_A 5c1b_A* 5c18_A* 3cf0_A* 10.1126/science.aad7974
PVClumT17 PAU_02231 PAU_02190 3lfh 3lfh_A 39.7 12 0.0003 28.9 >3lfh_A Manxa, phosphotransferase system, mannose/fructose-speci component IIA; PTS; 1.80A {Thermoanaerobacter tengcongensis} No DOI found.
PVClumT18 PAU_02230 PAU_02189 4mix 4mix_A 100.0 6e-57 1.6e-61 486.1 >4mix_A Putative insecticidal toxin; tyrosine glycosylation, UDP-GLCNAC, nucleotide-binding domai rossmann-like, glycosyltransferase; HET: MSE UD1; 1.80A {Photorhabdus asymbiotica subsp} 10.1038/nsmb.2688
PVClopT1 PAU_02112 PAU_02074 3eaa 3eaa_A 83.5 0.32 8.3e-06 33.5 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVClopT2 PAU_02111 PAU_02073 3j9q 3j9q_A 100.0 2.8e-35 7.3e-40 248.2 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClopT3 PAU_02110 PAU_02072 3j9q 3j9q_A 99.9 3.9e-31 1e-35 226.1 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClopT4 PAU_02109 PAU_02071 4tv4 4tv4_A 70.8 1.5 3.8e-05 31.8 >4tv4_A Uncharacterized protein; unknown function, ssgcid, virulence, structural genomics; 2.10A {Burkholderia pseudomallei} No DOI found.
PVClopT5 PAU_02108 PAU_02070 4hf1 4hf1_A 81.1 0.47 1.2e-05 28.7 >4hf1_A HTH-type transcriptional regulator ISCR; WHTH, protein-DNA complex, iron-sulfur cluster, winged helix helix, transcriptional regulator, redox sensor; HET: DNA; 2.22A {Escherichia coli} PDB: 4hf2_A* 4chu_A 10.1038/nsmb.2568
PVClopT6 PAU_02107 PAU_02069 2vol 2vol_A 28.5 23 0.00061 22.9 >2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A Key error. ID likely deprecated.
PVClopT7 PAU_02106 PAU_02068 4uhv 4uhv_A 99.9 8.6e-30 2.2e-34 243.3 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVClopT8 PAU_02105 PAU_02067 2ia7 2ia7_A 99.8 2.3e-23 6e-28 138.6 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVClopT9 PAU_02104 PAU_02066 3ojo 3ojo_A 31.3 19 0.00051 28.0 >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* 10.1074/jbc.M110.216002
PVClopT10 PAU_02103 PAU_02065 3h2t 3h2t_A 97.1 2.3e-06 6.1e-11 89.7 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVClopT11 PAU_02102 PAU_02064 1pqx 1pqx_A 37.4 13 0.00035 31.4 >1pqx_A Conserved hypothetical protein; ZR18,structure, autostructure,spins,autoassign, northeast structural genomics consortium; NMR {Staphylococcus aureus subsp} SCOP: d.267.1.1 PDB: 2ffm_A 2m6q_A 2m8w_A No DOI found.
PVClopT12 PAU_02101 PAU_02063 4yap 4yap_A 31.1 20 0.00052 29.1 >4yap_A Glutathione S-transferase homolog; GSH-lyase GSH-dependent; 1.11A {Sphingobium SP} PDB: 4g10_A 4yav_A* 10.1074/jbc.M115.700427
PVClopT13 PAU_02100 PAU_02062 5e7p 5e7p_A 99.9 2e-26 5.3e-31 232.9 >5e7p_A Cell division control protein CDC48; AAA ATPase, M. smegmatic, RECA, hydrolase; HET: ADP PG4 PGE; 2.51A {Mycobacterium smegmatis} 10.1128/JB.00905-15
PVClopT14 PAU_02099 PAU_02061 3rbt 3rbt_A 19.3 46.0 0.0012 25.1 >3rbt_A Glutathione transferase O1; glutathione S-transferase omega3; 2.20A {Bombyx mori} 10.1016/j.jmb.2011.07.019
PVClopT15 PAU_02098 PAU_02060 2ebf 2ebf_X 100.0 5.6e-90 1.5e-94 707.6 >2ebf_X Dermonecrotic toxin; pasteurella multocida toxin, trojan horse-like fold; HET: TRE; 1.90A {Pasteurella multocida} SCOP: a.296.1.1 c.150.1.2 d.3.1.17 PDB: 2ec5_A 2ebh_X* 10.1073/pnas.0608197104
PVClopT16 PAU_02097 PAU_02059 2jsp 2jsp_A 15.3 66.0 0.0017 24.7 >2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens} 10.1073/pnas.0706659104
PVClopT17 PAU_02096 PAU_02058 1ukf 1ukf_A 99.9 1.4e-26 3.8e-31 195.3 >1ukf_A Avirulence protein AVRPPH3; AVRPPHB, hypersensitive response, hydrolase; 1.35A {Pseudomonas syringae PV} SCOP: d.3.1.10 10.1073/pnas.2036536100
PVClopT18 PAU_02095 PAU_02057 4igl 4igl_B 100.0 8.8e-59 2.3e-63 451.0 >4igl_B YENC2; beta-propeller, RHS, toxin complex, toxin transporter/chaper secreted, toxin; 2.49A {Yersinia} 10.1038/nature12465
PVCunit1_1 afp1 PAU_02775 3eaa 3eaa_A 73.0 1.2 3.1e-05 30.8 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVCunit1_2 afp2 PAU_02776 3j9q 3j9q_A 100.0 3.7e-36 9.7e-41 254.4 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit1_3 afp3 PAU_02777 3j9q 3j9q_A 100.0 2.6e-35 6.9e-40 257.2 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit1_4 afp4 PAU_02778 3j9q 3j9q_A 99.9 3.6e-29 9.5e-34 214.6 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit1_5 afp5 PAU_02779 4tv4 4tv4_A 63.6 2.6 6.7e-05 30.5 >4tv4_A Uncharacterized protein; unknown function, ssgcid, virulence, structural genomics; 2.10A {Burkholderia pseudomallei} No DOI found.
PVCunit1_6 afp7 PAU_02780 4e71 4e71_A 48.8 6.8 0.00018 24.0 >4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens} No DOI found.
PVCunit1_7 afp7 PAU_02781 5a3a 5a3a_A 45.8 8.1 0.00021 30.6 >5a3a_A SIR2 family protein; transferase, P-ribosyltransferase, metalloprotein, NAD-depen lipoylation, regulatory enzyme, rossmann fold; 1.54A {Streptococcus pyogenes} PDB: 5a3b_A* 5a3c_A* 10.1016/j.molcel.2015.06.013
PVCunit1_8 PAU_02796 PAU_02782 4uhv 4uhv_A 99.9 1.4e-30 3.7e-35 248.7 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVCunit1_9 afp9 PAU_02783 2ia7 2ia7_A 99.7 5.4e-22 1.4e-26 133.1 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCunit1_10 afp10 PAU_02784 1pml 1pml_A 37.7 13 0.00034 21.4 >1pml_A Tissue plasminogen activator kringle 2; hydrolase(serine protease); 2.38A {Homo sapiens} SCOP: g.14.1.1 PDB: 1pk2_A* 1tpk_A 10.1002/pro.5560030605
PVCunit1_11 afp11 PAU_02785 3h2t 3h2t_A 96.7 1.5e-05 3.9e-10 80.6 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCunit1_12 afp12 PAU_02786 1pqx 1pqx_A 18.2 51.0 0.0013 28.2 >1pqx_A Conserved hypothetical protein; ZR18,structure, autostructure,spins,autoassign, northeast structural genomics consortium; NMR {Staphylococcus aureus subsp} SCOP: d.267.1.1 PDB: 2ffm_A 2m6q_A 2m8w_A No DOI found.
PVCunit1_13 PAU_02801 PAU_02787 1ocy 1ocy_A 98.3 6.7e-10 1.8e-14 92.9 >1ocy_A Bacteriophage T4 short tail fibre; structural protein, fibrous protein, LIPO-polysaccharide binding, bacteriophage structural protein; HET: CIT; 1.5A {Bacteriophage T4} SCOP: d.231.1.1 10.1016/S0022-2836(03)00755-1
PVCunit1_14 orf25 PAU_02788 3dzd 3dzd_A 24.8 30 0.00078 28.5 >3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A 10.1016/j.jmb.2008.10.024
PVCunit1_15 PAU_02803 PAU_02789 5e7p 5e7p_A 99.9 4.9e-28 1.3e-32 244.9 >5e7p_A Cell division control protein CDC48; AAA ATPase, M. smegmatic, RECA, hydrolase; HET: ADP PG4 PGE; 2.51A {Mycobacterium smegmatis} 10.1128/JB.00905-15
PVCunit1_16 PAU_02804 PAU_02790 4uhq 4uhq_A 35.4 15 0.00039 29.3 >4uhq_A Large component of pyocin AP41; hydrolase, bacteriocin, DNAse; HET: CIT; 1.50A {Pseudomonas aeruginosa} PDB: 4uhp_A* 10.1016/j.jmb.2015.07.014
PVCunit1_17 hrpN PAU_02791 1yqf 1yqf_A 60.7 3.2 8.3e-05 33.9 >1yqf_A Hypothetical protein LMAJ011689; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.30A {Leishmania major} SCOP: d.25.1.1 No DOI found.
PVCunit1_18 PAU_02806 PAU_02792 1t6u 1t6u_A 24.5 31 0.0008 28.1 >1t6u_A Superoxide dismutase [NI]; nickel, 4-helix bundle, hexamer, nisod, SOD, high resolution, oxidoreductase; 1.30A {Streptomyces coelicolor} SCOP: a.24.22.1 PDB: 1t6q_A 1t6i_A 3g4z_A 3g4x_A 4ncq_A 3g50_A 1q0g_A 1q0f_A 1q0d_A 1q0k_A 1q0m_A 10.1021/bi0496081
PVCunit1_19 PAU_02807 PAU_02793 3kx6 3kx6_A 19.7 45 0.0012 31.3 >3kx6_A Fructose-bisphosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, glycolysis, lyase, STRU genomics; HET: CIT; 2.10A {Babesia bovis} No DOI found.
PVCunit1_20 PAU_02808 PAU_02794 1vyy 1vyy_A 99.9 8.9e-33 2.3e-37 218.9 >1vyy_A Lectin; sugar-binding protein, D-mannose, plant pathogen; HET: BMA MAN; 1.00A {Ralstonia solanacearum} PDB: 1uqx_A* 2chh_A* Key error. ID likely deprecated.
PVCpnf1 PAK_3544 PAK_03203 3eaa 3eaa_A 78.5 0.66 1.7e-05 32.1 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVCpnf2 PAK_3543 PAK_03202 3j9q 3j9q_A 100.0 3e-34 7.9e-39 242.5 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCpnf3 PAK_3542 PAK_03201 3j9q 3j9q_A 99.9 8.7e-33 2.3e-37 239.9 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCpnf4 PAK_3541 PAK_03200 3j9q 3j9q_A 99.9 7.1e-27 1.8e-31 200.5 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCpnf5 PAK_3540 PAK_03199 3eaa 3eaa_A 92.6 0.018 4.7e-07 40.1 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVCpnf6 PAK_3539 PAK_03198 4aaa 4aaa_A 78.2 0.68 1.8e-05 28.3 >4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A* No DOI found.
PVCpnf7 PAK_3538 PAK_03197 1pp0 1pp0_A 18.8 48.0 0.0013 26.7 >1pp0_A Volvatoxin A2; ingot crystal form; 1.42A {Volvariella volvacea} SCOP: d.103.1.1 PDB: 1pp6_A 1vgf_A 1vcy_A 10.1016/j.jmb.2004.08.045
PVCpnf8 PAK_3537 PAK_03196 4uhv 4uhv_A 99.9 9.9e-29 2.6e-33 236.3 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVCpnf9 PAK_3536 PAK_03195 2ia7 2ia7_A 99.7 1.5e-21 3.9e-26 129.9 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCpnf10 PAK_3535 PAK_03194 1ukf 1ukf_A 77.5 0.75 1.9e-05 35.1 >1ukf_A Avirulence protein AVRPPH3; AVRPPHB, hypersensitive response, hydrolase; 1.35A {Pseudomonas syringae PV} SCOP: d.3.1.10 10.1073/pnas.2036536100
PVCpnf11 PAK_3534 PAK_03193 3h2t 3h2t_A 96.8 8.4e-06 2.2e-10 80.7 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCpnf12 PAK_3533 PAK_03192 2jpf 2jpf_A 32.7 18.0 0.00046 34.1 >2jpf_A Hypothetical protein; all alpha helical protein, type III secretion effector protein, structural genomics; NMR {Bordetella parapertussis} No DOI found.
PVCpnf13 PAK_3532 PAK_03191 2xgf 2xgf_A 97.8 4e-08 1.1e-12 86.2 >2xgf_A Long tail fiber protein P37; viral protein; 2.20A {Enterobacteria phage T4} 10.1073/pnas.1011218107
PVCpnf14 PAK_3531 PAK_03190 3fx7 3fx7_A 45.3 8.3 0.00022 28.7 >3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} PDB: 2gts_A 10.1093/jb/mvp098
PVCpnf15 PAK_3530 PAK_03189 5g4f 5g4f_A 99.9 7e-27 1.8e-31 225.6 >5g4f_A VCP-like ATPase; hydrolase, VAT, proteasome, protein dynamics, unfoldase, conformations, AAA ATPase; 7.00A {Thermoplasma acidophilum} PDB: 5g4g_A 1cz4_A 1cz5_A 10.1073/pnas.1603980113
PVCpnf16 PAK_3529 PAK_03188 3t5s 3t5s_A 61.4 3 7.9e-05 30.2 >3t5s_A Gilaa.00834.A, macrophage migration inhibitory factor; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Giardia lamblia} 10.1007/s10969-013-9155-9
PVCpnf17 PAK_3527 PAK_03187 4ae8 4ae8_A 59.8 3.4 8.8e-05 27.4 >4ae8_A Thioesterase superfamily member 4; hydrolase, hotdog-fold; 1.59A {Homo sapiens} PDB: 4gah_A* 10.1128/MCB.00312-12
PVCpnf18 PAK_3526 PAK_03186 3fxq 3fxq_A 99.7 2.7e-21 7e-26 122.2 >3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A* 10.1111/j.1365-2958.2010.07043.x
PVCpnf19 PAK_3525 PAK_03185 4mix 4mix_A 100.0 5e-35 1.3e-39 251.4 >4mix_A Putative insecticidal toxin; tyrosine glycosylation, UDP-GLCNAC, nucleotide-binding domai rossmann-like, glycosyltransferase; HET: MSE UD1; 1.80A {Photorhabdus asymbiotica subsp} 10.1038/nsmb.2688
PVCpnf20 PAK_3524 PAK_03184 1xju 1xju_A 99.4 4.1e-17 1.1e-21 98.8 >1xju_A Lysozyme; secreted inactive conformation, hydrolase; 1.07A {Enterobacteria phage P1} SCOP: d.2.1.3 10.1126/science.1105143
PVCpnf21 PAK_3523 PAK_03183 3hdf 3hdf_A 99.7 1.5e-22 3.8e-27 125.9 >3hdf_A Lysozyme; antimicrobial, bacteriolytic enzyme, glycosid hydrolase, late protein; 1.70A {Enterobacteria phage P21} 10.1038/nsmb.1681
PVCpnf22 PAK_3522 PAK_03182 1l8d 1l8d_A 69.1 1.7 4.4e-05 28.9 >1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1 10.1038/nature00922
PVCpnf23 PAK_3521 PAK_03181 3hdf 3hdf_A 100.0 1.8e-42 4.7e-47 232.0 >3hdf_A Lysozyme; antimicrobial, bacteriolytic enzyme, glycosid hydrolase, late protein; 1.70A {Enterobacteria phage P21} 10.1038/nsmb.1681
PVCcif1 PAK_1969 PAK_01787 3jqo 3jqo_B 40.9 11 0.00028 26.9 >3jqo_B TRAO protein; helical outer membrane TM, outer membrane protein complex, T protein; HET: LDA; 2.60A {Escherichia coli} PDB: 3zbi_B 2ofq_A 10.1038/nature08588
PVCcif2 PAK_1970 PAK_01788 3j9q 3j9q_A 100.0 3.7e-34 9.7e-39 242.8 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCcif3 PAK_1971 PAK_01789 3j9q 3j9q_A 99.9 1.8e-31 4.8e-36 234.4 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCcif4 PAK_1972 PAK_01790 3j9q 3j9q_A 99.9 3.9e-27 1e-31 202.0 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCcif5 PAK_1973 PAK_01791 4tv4 4tv4_A 40.1 11 0.0003 27.1 >4tv4_A Uncharacterized protein; unknown function, ssgcid, virulence, structural genomics; 2.10A {Burkholderia pseudomallei} No DOI found.
PVCcif6 PAK_1974 PAK_01792 3rjr 3rjr_A 53.8 5 0.00013 26.1 >3rjr_A Transforming growth factor beta-1; TGF beta, activation, integrin, cytokine; HET: NAG; 3.05A {Sus scrofa} 10.1038/nature10152
PVCcif7 PAK_1975 PAK_01793 5a3a 5a3a_A 50.8 6 0.00016 31.4 >5a3a_A SIR2 family protein; transferase, P-ribosyltransferase, metalloprotein, NAD-depen lipoylation, regulatory enzyme, rossmann fold; 1.54A {Streptococcus pyogenes} PDB: 5a3b_A* 5a3c_A* 10.1016/j.molcel.2015.06.013
PVCcif8 PAK_1976 PAK_01794 4uhv 4uhv_A 99.9 4.6e-28 1.2e-32 231.4 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVCcif9 PAK_1977 PAK_01795 2ia7 2ia7_A 99.7 9.7e-22 2.5e-26 131.7 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCcif10 PAK_1978 PAK_01796 2k4r 2k4r_A 37.5 13 0.00035 21.5 >2k4r_A Neurotrypsin; kringle domain, disulfide-rich protein fold, serine endopeptidase, hydrolase, extracellular proteolysis; NMR {Rattus norvegicus} PDB: 2k51_A 10.1021/bi800555z
PVCcif11 PAK_1979 PAK_01797 3h2t 3h2t_A 96.1 0.00012 3.2e-09 74.0 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCcif12 PAK_1980 PAK_01798 5efx 5efx_A 68.5 1.8 4.6e-05 36.3 >5efx_A RHO guanine nucleotide exchange factor 2; RHO GTPase, activity, signaling protein; 2.45A {Homo sapiens} 10.1016/j.bbrc.2016.01.150
PVCcif13 PAK_1981 PAK_01799 1ocy 1ocy_A 98.3 5.2e-10 1.4e-14 89.6 >1ocy_A Bacteriophage T4 short tail fibre; structural protein, fibrous protein, LIPO-polysaccharide binding, bacteriophage structural protein; HET: CIT; 1.5A {Bacteriophage T4} SCOP: d.231.1.1 10.1016/S0022-2836(03)00755-1
PVCcif14 PAK_1982 PAK_01800 1tuz 1tuz_A 21.4 39.0 0.001 26.1 >1tuz_A Diacylglycerol kinase alpha; transferase, HR532, nesgc, structural genomics, PSI, protein structure initiative; NMR {Homo sapiens} SCOP: a.39.1.7 No DOI found.
PVCcif15 PAK_1983 PAK_01801 5e7p 5e7p_A 99.8 5.5e-25 1.4e-29 222.7 >5e7p_A Cell division control protein CDC48; AAA ATPase, M. smegmatic, RECA, hydrolase; HET: ADP PG4 PGE; 2.51A {Mycobacterium smegmatis} 10.1128/JB.00905-15
PVCcif16 PAK_1984 PAK_01802 3fxd 3fxd_B 34.1 16 0.00043 28.1 >3fxd_B Protein ICMR; helix bundle, helix-turn-helix, unknown function; 2.10A {Legionella pneumophila subsp} PDB: 3fxe_B 10.1016/j.str.2009.02.011
PVCcif17 PAK_1985 PAK_01803 4fbj 4fbj_A 100.0 2.4e-91 6.3e-96 618.6 >4fbj_A CIF, hypothetical protein; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Photorhabdus luminescens subsp} PDB: 3gqj_A No DOI found.
PVCcif18 PAK_1986 PAK_01804 3r2n 3r2n_A 31.0 20 0.00052 26.9 >3r2n_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.30A {Mycobacterium leprae} 10.1016/j.tube.2014.12.003
PVCcif19 PAK_1987 PAK_01805 5ewy 5ewy_A 97.3 6.2e-07 1.6e-11 74.4 >5ewy_A Putative ADP-ribosyltransferase scabin; inhibitor, transferase-transferase inhibitor CO; HET: 5TQ; 1.40A {Streptomyces scabiei 87} PDB: 5ewk_A* 10.1074/jbc.M115.707653
PVCcif20 PAK_1988 PAK_01806 2hxj 2hxj_A 74.1 1.1 2.8e-05 35.9 >2hxj_A Hypothetical protein; APC83807, structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.21A {Neisseria meningitidis MC58} SCOP: a.136.1.1 PDB: 3mw6_A Key error. ID likely deprecated.
PVClumt1 PAK_2216 PAK_02014 3eaa 3eaa_A 69.3 1.7 4.3e-05 30.1 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVClumt2 PAK_2215 PAK_02013 3j9q 3j9q_A 99.6 1.4e-19 3.6e-24 154.2 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClumt3 PAK_2214 PAK_02012 3j9q 3j9q_A 98.2 1.5e-09 3.9e-14 75.6 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClumt4 PAK_2213 PAK_02011 3j9q 3j9q_A 99.9 7.2e-29 1.9e-33 212.0 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClumt5 PAK_2212 PAK_02010 3eaa 3eaa_A 72.5 1.2 3.3e-05 30.9 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVClumt6 PAK_2211 PAK_02009 1use 1use_A 68.7 1.7 4.5e-05 24.0 >1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A 10.1073/pnas.0403069101
PVClumt7 PAK_2210 PAK_02008 4v2x 4v2x_A 33.0 17.0 0.00046 31.3 >4v2x_A Endo-beta-1,4-glucanase (cellulase B); hydrolase, TRI-modular; 1.64A {Bacillus halodurans} 10.1074/jbc.M115.637827
PVClumt8 PAK_2209 PAK_02007 2p5z 2p5z_X 99.7 1.5e-21 3.8e-26 177.2 >2p5z_X Type VI secretion system component; structural genomics, unknown function, PSI-2, protein struct initiative; 2.60A {Escherichia coli O6} SCOP: b.40.8.1 b.106.1.1 b.106.1.1 10.1073/pnas.0813360106
PVClumt9 PAK_2208 PAK_02006 2ia7 2ia7_A 99.7 6.7e-22 1.7e-26 132.6 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVClumt10 PAK_2207 PAK_02005 3ull 3ull_A 58.1 3.8 9.8e-05 26.7 >3ull_A DNA binding protein; DNA replication, mitochondrion, transit peptide; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 PDB: 1s3o_A* 2dud_A 10.1038/nsb0297-153
PVClumt11 PAK_2206 PAK_02004 2kcp 2kcp_A 37.9 13 0.00034 29.9 >2kcp_A 30S ribosomal protein S8E; RPS8E, beta, NESG, ribonucleoprotein, structural genomics, PSI-2; NMR {Methanothermobacter thermautotrophicusstr} PDB: 2kcy_A No DOI found.
PVClumt12 PAK_2205 PAK_02003 3h2t 3h2t_A 96.2 8.2e-05 2.1e-09 63.5 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVClumt13 PAK_2204 PAK_02002 1yo5 1yo5_C 39.0 12 0.00032 32.1 >1yo5_C SAM pointed domain containing ETS transcription factor; protein-DNA complex, double helix, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.4.5.21 10.1021/bi047352t
PVClumt14 PAK_2203 PAK_02001 1v1h 1v1h_A 95.3 0.00092 2.4e-08 49.5 >1v1h_A Fibritin, fiber protein; chimera; 1.9A {Human adenovirus type 2} SCOP: b.83.1.1 h.1.17.1 PDB: 1v1i_A 10.1016/j.jmb.2004.07.008
PVClumt15 PAK_2202 PAK_02000 1osn 1osn_A 25.9 28 0.00073 33.2 >1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1 10.1074/jbc.M302025200
PVClumt16 PAK_2201 PAK_01999 4uid 4uid_A 64.8 2.4 6.2e-05 31.5 >4uid_A S-layer SBSC, surface layer protein; sugar binding protein, G. stearothermophilus; 2.80A {Geobacillus stearothermophilus} No DOI found.
PVClumt17 PAK_2200 PAK_01998 3k8p 3k8p_C 34.7 16.0 0.00041 34.1 >3k8p_C DSL1, KLLA0C02695P; intracellular trafficking, DSL1 complex, multisubunit tethering complex, snare proteins; 2.60A {Kluyveromyces lactis} 10.1016/j.cell.2009.11.002
PVClumt18 PAK_2199 PAK_01997 5ftj 5ftj_A 99.9 1.6e-26 4.2e-31 229.2 >5ftj_A Transitional endoplasmic reticulum ATPase; hydrolase, single-particle, AAA ATPase; HET: ADP OJA; 2.30A {Homo sapiens} PDB: 3cf1_A* 3cf3_A* 3cf2_A* 5ftk_A* 5ftl_A* 5ftm_A* 5ftn_A* 1r7r_A* 5c19_A 5c1b_A* 5c18_A* 3cf0_A* 10.1126/science.aad7974
PVClumt19 PAK_2198 PAK_01996 3lfh 3lfh_A 39.5 12 0.00031 28.9 >3lfh_A Manxa, phosphotransferase system, mannose/fructose-speci component IIA; PTS; 1.80A {Thermoanaerobacter tengcongensis} No DOI found.
PVClumt20 PAK_2197 PAK_01995 1wrd 1wrd_A 43.2 9.4 0.00025 32.8 >1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1 PDB: 2n2n_A 10.1016/j.febslet.2005.08.076
PVClumt21 PAK_2195 PAK_01994 4mix 4mix_A 100.0 8.9e-44 2.3e-48 348.7 >4mix_A Putative insecticidal toxin; tyrosine glycosylation, UDP-GLCNAC, nucleotide-binding domai rossmann-like, glycosyltransferase; HET: MSE UD1; 1.80A {Photorhabdus asymbiotica subsp} 10.1038/nsmb.2688
PVClopt1 PAK_2092 PAK_01896 3eaa 3eaa_A 82.2 0.39 1e-05 33.1 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVClopt2 PAK_2091 PAK_01895 3j9q 3j9q_A 100.0 2.5e-35 6.4e-40 248.6 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClopt3 PAK_2090 PAK_01894 3j9q 3j9q_A 99.9 1.8e-29 4.6e-34 215.9 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClopt4 PAK_2089 PAK_01893 3eaa 3eaa_A 64.9 2.3 6.1e-05 29.4 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVClopt5 PAK_2088 PAK_01892 2v1l 2v1l_A 26.7 26 0.00069 22.5 >2v1l_A Hypothetical protein; pathogenicity island, unknown function; 2.13A {Vibrio cholerae} 10.1002/prot.21993
PVClopt6 PAK_2087 PAK_01891 3zo0 3zo0_A 61.8 2.9 7.7e-05 27.8 >3zo0_A IG gamma-2A chain C region, A allele; immune system-ligase complex; HET: NAG BMA MAN GAL FUC; 1.99A {Mus musculus} PDB: 2rgs_A* 10.1073/pnas.0800159105
PVClopt7 PAK_2086 PAK_01890 4uhv 4uhv_A 99.9 8.4e-29 2.2e-33 236.5 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVClopt8 PAK_2085 PAK_01889 2ia7 2ia7_A 99.8 2.2e-23 5.8e-28 137.0 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVClopt9 PAK_2084 PAK_01888 3ojo 3ojo_A 69.6 1.6 4.2e-05 34.0 >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* 10.1074/jbc.M110.216002
PVClopt10 PAK_2083 PAK_01887 3h2t 3h2t_A 96.8 9.7e-06 2.5e-10 85.1 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVClopt11 PAK_2082 PAK_01886 1ip9 1ip9_A 49.1 6.6 0.00017 31.0 >1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A 10.1093/emboj/20.15.3947
PVClopt12 PAK_2081 PAK_01885 1nvp 1nvp_B 34.5 16 0.00042 26.7 >1nvp_B Transcription initiation factor IIA alpha chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: a.32.1.1 PDB: 5fur_B* 10.1016/S0022-2836(03)00887-8
PVClopt13 PAK_2080 PAK_01884 5e7p 5e7p_A 99.8 4.3e-26 1.1e-30 230.6 >5e7p_A Cell division control protein CDC48; AAA ATPase, M. smegmatic, RECA, hydrolase; HET: ADP PG4 PGE; 2.51A {Mycobacterium smegmatis} 10.1128/JB.00905-15
PVClopt14 PAK_2079 PAK_01883 4x8k 4x8k_B 31.6 19.0 0.0005 28.0 >4x8k_B RNA polymerase-binding protein RBPA, RNA polymerase sigma factor SIGA; transcription activator; HET: EDO; 2.20A {Mycobacterium tuberculosis} PDB: 2m6p_A 10.1073/pnas.1504942112
PVClopt15 PAK_2078 PAK_01882 2l1n 2l1n_A 52.8 5.3 0.00014 27.8 >2l1n_A Uncharacterized protein; DUF1823, hypothetical protein, cyanobacteria, structural GEN PSI-biology, protein structure initiative; NMR {Synechococcus elongatus} No DOI found.
PVClopt16 PAK_2077 PAK_01881 1ukf 1ukf_A 99.8 2.5e-25 6.6e-30 187.7 >1ukf_A Avirulence protein AVRPPH3; AVRPPHB, hypersensitive response, hydrolase; 1.35A {Pseudomonas syringae PV} SCOP: d.3.1.10 10.1073/pnas.2036536100
PVClopt17 PAK_2075 PAK_01880 1t3c 1t3c_A 93.5 0.0089 2.3e-07 65.9 >1t3c_A Neurotoxin type E; catalytic domain, E212Q mutant, light chain, hydrolase; 1.90A {Clostridium botulinum} SCOP: d.92.1.7 PDB: 3d3x_A 1t3a_A 1zl5_A 1zl6_A 1zn3_A 1zkw_A 1zkx_A 10.1021/bi036278w
PVCunit1_1 PAK_2876 PAK_02606 3eaa 3eaa_A 73.2 1.2 3.1e-05 30.8 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVCunit1_2 PAK_2877 PAK_02607 3j9q 3j9q_A 100.0 3.8e-34 1e-38 242.1 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit1_3 PAK_2878 PAK_02608 3j9q 3j9q_A 100.0 6.9e-34 1.8e-38 247.8 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit1_4 PAK_2879 PAK_02609 3j9q 3j9q_A 99.9 6.1e-30 1.6e-34 219.4 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit1_5 PAK_2880 PAK_02610 4tv4 4tv4_A 63.0 2.7 7e-05 30.4 >4tv4_A Uncharacterized protein; unknown function, ssgcid, virulence, structural genomics; 2.10A {Burkholderia pseudomallei} No DOI found.
PVCunit1_6 PAK_2881 PAK_02611 4yci 4yci_A 66.4 2.1 5.4e-05 26.8 >4yci_A Bone morphogenetic protein 9 growth factor domain; Pro-BMP complex, transforming growth factor-beta cytokine; HET: NAG; 3.25A {Mus musculus} PDB: 4ycg_A* 10.1073/pnas.1501303112
PVCunit1_7 PAK_2882 PAK_02612 5a3a 5a3a_A 54.5 4.8 0.00012 32.0 >5a3a_A SIR2 family protein; transferase, P-ribosyltransferase, metalloprotein, NAD-depen lipoylation, regulatory enzyme, rossmann fold; 1.54A {Streptococcus pyogenes} PDB: 5a3b_A* 5a3c_A* 10.1016/j.molcel.2015.06.013
PVCunit1_8 PAK_2883 PAK_02613 4uhv 4uhv_A 99.9 2.4e-30 6.4e-35 247.1 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVCunit1_9 PAK_2884 PAK_02614 2ia7 2ia7_A 99.7 1e-21 2.6e-26 131.7 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCunit1_10 PAK_2885 PAK_02615 1ngv 1ngv_A 43.2 9.4 0.00025 31.0 >1ngv_A Amyloid beta precursor protein-binding protein 1; signaling protein; 2.60A {Homo sapiens} PDB: 3gzn_A* 1yov_A 2nvu_A* 1r4m_A 1r4n_A* 1tt5_A 3dbh_A 3dbl_A 3dbr_A Key error. ID likely deprecated.
PVCunit1_11 PAK_2886 PAK_02616 3h2t 3h2t_A 96.6 1.9e-05 4.9e-10 79.9 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCunit1_12 PAK_2887 PAK_02617 1s5u 1s5u_A 40.5 11 0.00029 29.0 >1s5u_A Protein YBGC; structural genomics, hypothetical protein, thioesterase fold, PSI, protein structure initiative; 1.70A {Escherichia coli} SCOP: d.38.1.1 PDB: 5kl9_A* 5t07_A* 5t06_A* No DOI found.
PVCunit1_13 PAK_2888 PAK_02618 3izo 3izo_F 98.9 5.7e-13 1.5e-17 133.9 >3izo_F Fiber; pentameric penton base, trimeri viral protein; 3.60A {Human adenovirus 5} 10.1016/j.jmb.2010.11.043
PVCunit1_14 PAK_2889 PAK_02619 1ojh 1ojh_A 20.8 41.0 0.0011 26.2 >1ojh_A NBLA; degradation protein, phycobilisome degradation, protein BIND; HET: MSE; 1.80A {Anabaena SP} SCOP: a.214.1.1 10.1074/jbc.M507243200
PVCunit1_15 PAK_2890 PAK_02620 5e7p 5e7p_A 99.9 1.8e-26 4.6e-31 233.6 >5e7p_A Cell division control protein CDC48; AAA ATPase, M. smegmatic, RECA, hydrolase; HET: ADP PG4 PGE; 2.51A {Mycobacterium smegmatis} 10.1128/JB.00905-15
PVCunit1_16 PAK_2891 PAK_02621 5fvk 5fvk_C 25.4 29.0 0.00076 20.8 >5fvk_C VFA1, VPS4-associated protein 1; hydrolase, MIT domain, yeast, ATPase; 1.66A {Saccharomyces cerevisiae} PDB: 4niq_C 10.1016/j.jmb.2016.04.007
PVCunit1_17 PAK_2892 PAK_02622 1cii 1cii_A 63.2 2.7 6.9e-05 41.7 >1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1 10.1038/385461a0
PVCunit1_18 PAK_2893 PAK_02623 3mfx 3mfx_A 51.3 5.8 0.00015 23.5 >3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis} No DOI found.
PVCunit1_19 PAK_2894 PAK_02624 3fnb 3fnb_A 74.6 1.0 2.7e-05 35.5 >3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix bundle, structural genomics protein structure initiative; HET: PGE; 2.12A {Streptococcus mutans} No DOI found.
PVCunit1_20 PAK_2895 PAK_02625 1ocy 1ocy_A 97.2 1.6e-06 4.1e-11 65.1 >1ocy_A Bacteriophage T4 short tail fibre; structural protein, fibrous protein, LIPO-polysaccharide binding, bacteriophage structural protein; HET: CIT; 1.5A {Bacteriophage T4} SCOP: d.231.1.1 10.1016/S0022-2836(03)00755-1
PVCunit1_21 PAK_2896 PAK_02626 1vyy 1vyy_A 100.0 5.8e-35 1.5e-39 231.2 >1vyy_A Lectin; sugar-binding protein, D-mannose, plant pathogen; HET: BMA MAN; 1.00A {Ralstonia solanacearum} PDB: 1uqx_A* 2chh_A* Key error. ID likely deprecated.
PVCcif1 plu2531 PLT_02568 3jqo 3jqo_B 47.2 7.4 0.00019 27.7 >3jqo_B TRAO protein; helical outer membrane TM, outer membrane protein complex, T protein; HET: LDA; 2.60A {Escherichia coli} PDB: 3zbi_B 2ofq_A 10.1038/nature08588
PVCcif2 plu2530 PLT_02567 3j9q 3j9q_A 99.9 1.5e-31 4e-36 226.6 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCcif3 plu2529 PLT_02566 3j9q 3j9q_A 100.0 3.8e-36 9.8e-41 262.4 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCcif4 plu2528 PLT_02565 3j9q 3j9q_A 99.9 2.2e-28 5.7e-33 209.6 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCcif5 plu2527 PLT_02564 4tv4 4tv4_A 68.0 1.8 4.8e-05 31.3 >4tv4_A Uncharacterized protein; unknown function, ssgcid, virulence, structural genomics; 2.10A {Burkholderia pseudomallei} No DOI found.
PVCcif6 plu2526 PLT_02563 1use 1use_A 63.2 2.7 6.9e-05 23.2 >1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A 10.1073/pnas.0403069101
PVCcif7 plu2525 PLT_02562 4bs6 4bs6_A 22.6 35 0.00092 24.5 >4bs6_A Cathepsin S; hydrolase, cysteine protease, covalent ligand; HET: JG7; 1.20A {Mus musculus} PDB: 4bpv_A* 4bqv_A* 4bs5_A* 4bsq_A* 4mzo_A* 4mzs_A* 4p6e_A* 2h7j_A* 2f1g_A* 2hh5_B* 2hhn_A* 2hxz_A* 2op3_A* 1ms6_A* 2r9m_A* 2r9n_A* 2r9o_A* 3n3g_A* 3n4c_A* 4p6g_A* 3ovx_A* 2frq_A* 2fra_A* 2fq9_A* 2ft2_A* 2fud_A* 2g7y_A* 1nqc_A* 1npz_A* 2g6d_A* ... No DOI found.
PVCcif8 plu2524 PLT_02561 4uhv 4uhv_A 99.9 3.3e-27 8.6e-32 225.6 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVCcif9 plu2523 PLT_02560 2ia7 2ia7_A 99.8 5.4e-25 1.4e-29 146.2 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCcif10 plu2522 PLT_02559 4jiw 4jiw_D 77.4 0.75 2e-05 28.8 >4jiw_D C1882, putative uncharacterized protein; PAAR-repeat motif, membrane piercing, type VI secretion SYST spike, cell puncturing device, beta-helix; 3.40A {Escherichia coli} 10.1038/nature12453
PVCcif11 plu2521 PLT_02558 3h2t 3h2t_A 96.6 2.6e-05 6.7e-10 79.0 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCcif12 plu2520 PLT_02557 1fho 1fho_A 64.0 2.5 6.5e-05 33.9 >1fho_A UNC-89; pleckstrin homology domain, electrostatics, muscle, signal transduction, signaling protein; NMR {Caenorhabditis elegans} SCOP: b.55.1.1 10.1016/S0969-2126(00)00509-8
PVCcif13 plu2519 PLT_02556 2xgf 2xgf_A 96.8 1.2e-05 3e-10 70.6 >2xgf_A Long tail fiber protein P37; viral protein; 2.20A {Enterobacteria phage T4} 10.1073/pnas.1011218107
PVCcif14 plu2518 PLT_02555 3b1j 3b1j_C 41.9 10 0.00027 26.0 >3b1j_C CP12; alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_C* 10.1016/j.str.2011.08.016
PVCcif15 plu2517 PLT_02554 5e7p 5e7p_A 99.9 3.4e-27 8.9e-32 238.8 >5e7p_A Cell division control protein CDC48; AAA ATPase, M. smegmatic, RECA, hydrolase; HET: ADP PG4 PGE; 2.51A {Mycobacterium smegmatis} 10.1128/JB.00905-15
PVCcif16 plu2516 PLT_02553 1u1j 1u1j_A 39.0 12 0.00032 35.6 >1u1j_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; methionine, synthase, methyltetrahydrofolate; HET: C2F; 2.40A {Arabidopsis thaliana} SCOP: c.1.22.2 c.1.22.2 PDB: 1u1h_A* 1u1u_A 1u22_A* 10.1074/jbc.C400325200
PVCcif17 plu2515 PLT_02552 4fbj 4fbj_A 100.0 3e-109 7e-114 735.1 >4fbj_A CIF, hypothetical protein; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Photorhabdus luminescens subsp} PDB: 3gqj_A No DOI found.
PVCcif18 plu2514 PLT_02551 3wmi 3wmi_B 20.6 41 0.0011 24.0 >3wmi_B EIAV GP45 wild type; alpha-helix, virus fusion, viral protein; 1.90A {Equine} PDB: 3wmj_B No DOI found.
PVClopt1 plu2385 PLT_02424 3eaa 3eaa_A 82.7 0.37 9.5e-06 33.4 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVClopt2 plu2386 PLT_02425 3j9q 3j9q_A 99.9 4.2e-33 1.1e-37 235.7 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClopt3 plu2387 PLT_02426 3j9q 3j9q_A 100.0 4.1e-34 1.1e-38 247.2 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClopt4 plu2388 PLT_02427 3j9q 3j9q_A 99.9 5.2e-31 1.3e-35 225.1 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClopt5 plu2389 PLT_02428 4tv4 4tv4_A 66.1 2.1 5.6e-05 30.9 >4tv4_A Uncharacterized protein; unknown function, ssgcid, virulence, structural genomics; 2.10A {Burkholderia pseudomallei} No DOI found.
PVClopt6 plu2390 PLT_02429 4zmk 4zmk_A 51.9 5.6 0.00015 24.7 >4zmk_A Telomere length regulator TAZ1; dimerization domain, fission yeast, DNA binding PR; 1.50A {Schizosaccharomyces pombe} 10.1038/cr.2015.76
PVClopt7 plu2391 PLT_02430 5a3a 5a3a_A 48.7 6.8 0.00018 31.1 >5a3a_A SIR2 family protein; transferase, P-ribosyltransferase, metalloprotein, NAD-depen lipoylation, regulatory enzyme, rossmann fold; 1.54A {Streptococcus pyogenes} PDB: 5a3b_A* 5a3c_A* 10.1016/j.molcel.2015.06.013
PVClopt8 plu2392 PLT_02431 4uhv 4uhv_A 99.9 3.8e-31 1e-35 252.7 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVClopt9 plu2393 PLT_02432 2ia7 2ia7_A 99.8 1.1e-23 2.7e-28 140.3 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVClopt10 plu2394 PLT_02433 4jiw 4jiw_D 61.0 3.1 8.1e-05 26.0 >4jiw_D C1882, putative uncharacterized protein; PAAR-repeat motif, membrane piercing, type VI secretion SYST spike, cell puncturing device, beta-helix; 3.40A {Escherichia coli} 10.1038/nature12453
PVClopt11 plu2395 PLT_02434 3h2t 3h2t_A 97.5 2.7e-07 7.1e-12 96.6 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVClopt12 plu2396 PLT_02435 1pqx 1pqx_A 49.6 6.5 0.00017 33.3 >1pqx_A Conserved hypothetical protein; ZR18,structure, autostructure,spins,autoassign, northeast structural genomics consortium; NMR {Staphylococcus aureus subsp} SCOP: d.267.1.1 PDB: 2ffm_A 2m6q_A 2m8w_A No DOI found.
PVClopt13 plu2397 PLT_02436 2j9w 2j9w_A 27.5 25 0.00065 28.7 >2j9w_A VPS28, VPS28-PROV protein; NZF finger, HIV budding, protein transport; 1.30A {Xenopus laevis} 10.1038/sj.emboj.7601501
PVClopt14 plu2398 PLT_02437 5e7p 5e7p_A 99.9 4.6e-27 1.2e-31 237.8 >5e7p_A Cell division control protein CDC48; AAA ATPase, M. smegmatic, RECA, hydrolase; HET: ADP PG4 PGE; 2.51A {Mycobacterium smegmatis} 10.1128/JB.00905-15
PVClopt15 plu2399 PLT_02438 3b33 3b33_A 21.2 40.0 0.001 18.4 >3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633} No DOI found.
PVClopt16 plu2400 PLT_02439 2ebf 2ebf_X 100.0 1.6e-85 4.1e-90 674.4 >2ebf_X Dermonecrotic toxin; pasteurella multocida toxin, trojan horse-like fold; HET: TRE; 1.90A {Pasteurella multocida} SCOP: a.296.1.1 c.150.1.2 d.3.1.17 PDB: 2ec5_A 2ebh_X* 10.1073/pnas.0608197104
PVClopt17 plu2401 PLT_02440 1ukf 1ukf_A 99.8 1.6e-25 4.2e-30 188.8 >1ukf_A Avirulence protein AVRPPH3; AVRPPHB, hypersensitive response, hydrolase; 1.35A {Pseudomonas syringae PV} SCOP: d.3.1.10 10.1073/pnas.2036536100
PVCunit1_1 plu1730 PLT_01758 3eaa 3eaa_A 77.0 0.79 2.1e-05 31.7 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVCunit1_2 plu1729 PLT_01757 3j9q 3j9q_A 100.0 2.6e-35 6.7e-40 248.9 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit1_3 plu1728 PLT_01756 3j9q 3j9q_A 100.0 8.6e-34 2.2e-38 247.3 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit1_4 plu1727 PLT_01755 3j9q 3j9q_A 99.9 2.5e-29 6.6e-34 215.0 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit1_5 plu1726 PLT_01754 3eaa 3eaa_A 82.2 0.39 1e-05 33.3 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVCunit1_6 plu1725 PLT_01753 1use 1use_A 58.6 3.7 9.6e-05 22.6 >1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A 10.1073/pnas.0403069101
PVCunit1_7 plu1724 PLT_01752 1avo 1avo_B 32.8 18 0.00046 27.2 >1avo_B 11S regulator; proteasome activator, cell adhesion, interferon induction; 2.80A {Homo sapiens} SCOP: a.24.8.1 10.1038/37670
PVCunit1_8 plu1723 PLT_01751 4uhv 4uhv_A 99.9 4e-29 1e-33 238.8 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVCunit1_9 plu1722 PLT_01750 2ia7 2ia7_A 99.2 2.9e-15 7.7e-20 106.9 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCunit1_10 plu1721 PLT_01749 2fwm 2fwm_X 33.8 17 0.00043 23.1 >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossmann fold, chorismate metabolism, short-CH oxidoreductase, tetramer; 2.00A {Escherichia coli} 10.1107/S0907444906015824
PVCunit1_11 plu1720 PLT_01748 3h2t 3h2t_A 96.0 0.00015 4e-09 73.4 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCunit1_12 plu1719 PLT_01747 1pqx 1pqx_A 53.4 5.1 0.00013 33.8 >1pqx_A Conserved hypothetical protein; ZR18,structure, autostructure,spins,autoassign, northeast structural genomics consortium; NMR {Staphylococcus aureus subsp} SCOP: d.267.1.1 PDB: 2ffm_A 2m6q_A 2m8w_A No DOI found.
PVCunit1_13 plu1718 PLT_01746 1ocy 1ocy_A 98.0 9.6e-09 2.5e-13 86.7 >1ocy_A Bacteriophage T4 short tail fibre; structural protein, fibrous protein, LIPO-polysaccharide binding, bacteriophage structural protein; HET: CIT; 1.5A {Bacteriophage T4} SCOP: d.231.1.1 10.1016/S0022-2836(03)00755-1
PVCunit1_14 plu1717 PLT_01745 5l3x 5l3x_B 17.9 52.0 0.0013 32.1 >5l3x_B Negative elongation factor C/D; transcription, repressor, transcription regulation, gene EXP; 2.75A {Homo sapiens} 10.7554/eLife.14981
PVCunit1_15 plu1716 PLT_01744 5e7p 5e7p_A 99.8 2.9e-25 7.6e-30 224.7 >5e7p_A Cell division control protein CDC48; AAA ATPase, M. smegmatic, RECA, hydrolase; HET: ADP PG4 PGE; 2.51A {Mycobacterium smegmatis} 10.1128/JB.00905-15
PVCunit1_16 plu1715 PLT_01743 1vwx 1vwx_f 22.5 36 0.00093 27.1 >1vwx_f Ribosomal protein EL33; mammalian, ribosome; 3.40A {Sus scrofa} PDB: 1vwz_f 1vx1_f 1vx4_f 3j3b_f 4cxd_f 4upx_f 4uq1_f 4w20_f 4w22_f 4w25_f 4w27_f Key error. ID likely deprecated.
PVCunit1_17 plu1714 PLT_01742 1eb6 1eb6_A 82.4 0.38 1e-05 31.5 >1eb6_A Neutral protease II; metalloproteinase, zinc, hydrolase; 1.0A {Aspergillus oryzae} SCOP: d.92.1.12 10.1107/S090744490101335X
PVCunit1_18 plu1713 PLT_01741 2hwn 2hwn_E 27.0 26 0.00068 21.9 >2hwn_E A kinase binding peptide; PKA, AKAP, dimerization/docking, D/D, regulatory subunit, TR; 1.60A {Rattus norvegicus} 10.1016/j.molcel.2006.09.015
PVCunit1_19 plu1712 PLT_01740 1yrt 1yrt_A 98.1 2.8e-09 7.3e-14 98.9 >1yrt_A Bifunctional hemolysin-adenylate cyclase; CYAA, layse, toxin; 2.10A {Bordetella pertussis} PDB: 1yru_A 1zot_A* 2col_A 10.1038/sj.emboj.7600800
PVCunit2_1 plu1708 PLT_01736 3eaa 3eaa_A 69.5 1.6 4.2e-05 30.1 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVCunit2_2 plu1707 PLT_01735 3j9q 3j9q_A 100.0 1.2e-33 3.2e-38 239.0 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit2_3 plu1706 PLT_01734 3j9q 3j9q_A 100.0 1.6e-34 4.3e-39 253.7 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit2_4 plu1705 PLT_01733 3j9q 3j9q_A 99.9 7.2e-30 1.9e-34 219.0 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit2_5 plu1704 PLT_01732 4etv 4etv_A 39.0 12 0.00032 27.6 >4etv_A Ryanodine receptor 2; phosphorylation, cardiac, metal transport; 1.65A {Mus musculus} 10.1016/j.str.2012.04.015
PVCunit2_6 plu1703 PLT_01731 4e71 4e71_A 53.7 5.0 0.00013 24.5 >4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens} No DOI found.
PVCunit2_7 plu1702 PLT_01730 5a3a 5a3a_A 64.0 2.5 6.6e-05 33.5 >5a3a_A SIR2 family protein; transferase, P-ribosyltransferase, metalloprotein, NAD-depen lipoylation, regulatory enzyme, rossmann fold; 1.54A {Streptococcus pyogenes} PDB: 5a3b_A* 5a3c_A* 10.1016/j.molcel.2015.06.013
PVCunit2_8 plu1701 PLT_01729 4uhv 4uhv_A 99.9 2.2e-30 5.8e-35 247.3 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVCunit2_9 plu1700 PLT_01728 2ia7 2ia7_A 99.7 1.1e-22 2.9e-27 138.2 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCunit2_10 plu1699 PLT_01727 2k4r 2k4r_A 34.4 16 0.00042 21.1 >2k4r_A Neurotrypsin; kringle domain, disulfide-rich protein fold, serine endopeptidase, hydrolase, extracellular proteolysis; NMR {Rattus norvegicus} PDB: 2k51_A 10.1021/bi800555z
PVCunit2_11 plu1698 PLT_01726 3h2t 3h2t_A 96.8 8e-06 2.1e-10 82.6 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCunit2_12 plu1697 PLT_01725 3sok 3sok_A 25.8 28.0 0.00073 29.3 >3sok_A Fimbrial protein; pilus subunit, extracellular, cell adhesion; 2.30A {Dichelobacter nodosus} 10.1074/jbc.M111.297242
PVCunit2_13 plu1696 PLT_01724 3izo 3izo_F 98.4 3.3e-10 8.5e-15 108.7 >3izo_F Fiber; pentameric penton base, trimeri viral protein; 3.60A {Human adenovirus 5} 10.1016/j.jmb.2010.11.043
PVCunit2_14 plu1695 PLT_01723 4u7b 4u7b_A 99.8 2e-23 5.3e-28 167.0 >4u7b_A Mariner MOS1 transposase; transposon synaptic complex, helix-turn-helix, like fold, DNA transposition, hydrolase-DNA complex; HET: DNA; 3.09A {Drosophila mauritiana} PDB: 4r79_A 3hos_A* 3hot_A 10.1093/nar/gkv096
PVCunit2_15 plu1694 PLT_01722 2mdp 2mdp_A 23.8 32.0 0.00085 28.7 >2mdp_A Gene 1.2 protein; dntpase inhibitor, viral protein; NMR {Enterobacteria phage T7} No DOI found.
PVCunit2_16 plu1693 PLT_01721 5e7p 5e7p_A 99.8 7.7e-26 2e-30 228.7 >5e7p_A Cell division control protein CDC48; AAA ATPase, M. smegmatic, RECA, hydrolase; HET: ADP PG4 PGE; 2.51A {Mycobacterium smegmatis} 10.1128/JB.00905-15
PVCunit2_17 plu1692 PLT_01720 3ggm 3ggm_A 54.2 4.9 0.00013 26.2 >3ggm_A Uncharacterized protein BT9727_2919; bacillus cereus group., structural genomics, PSI-2, protein structure initiative; 2.00A {Bacillus thuringiensis serovarkonkukian} No DOI found.
PVCunit2_18 plu1691 PLT_01719 3u8p 3u8p_A 21.9 37.0 0.00097 31.6 >3u8p_A Cytochrome B562 integral fusion with enhanced GRE fluorescent protein; directed evolution, domain insertion, energy transfer, fluor quenching; HET: CRO HEM; 2.75A {Aequorea victoria} 10.1021/ja301987h
PVCunit2_19 plu1690 PLT_01718 2rio 2rio_A 79.3 0.6 1.6e-05 29.0 >2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* 10.1016/j.cell.2007.10.057
PVCunit2_20 plu1689 PLT_01717 2lqt 2lqt_A 37.7 13 0.00034 28.2 >2lqt_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 7; CHCH domain, mitochondrial import, alpha-hairpin, MIA40-DEPE disulfide relay system; NMR {Homo sapiens} 10.1016/j.jsb.2012.07.007
PVCunit3_1 plu1689 PLT_01716 1l4i 1l4i_A 69.3 1.7 4.3e-05 30.5 >1l4i_A SFAE protein; periplasmic chaperone, immunoglobulin fold; 2.20A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 10.1107/S0907444902005954
PVCunit3_2 plu1688 PLT_01715 3j9q 3j9q_A 100.0 8.9e-34 2.3e-38 240.0 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit3_3 plu1687 PLT_01714 3j9q 3j9q_A 100.0 3.8e-34 1e-38 249.4 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit3_4 plu1686 PLT_01713 3j9q 3j9q_A 99.9 9.2e-29 2.4e-33 211.5 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit3_5 plu1685 PLT_01712 4tv4 4tv4_A 61.4 3.0 7.9e-05 30.2 >4tv4_A Uncharacterized protein; unknown function, ssgcid, virulence, structural genomics; 2.10A {Burkholderia pseudomallei} No DOI found.
PVCunit3_6 plu1684 PLT_01711 1x8d 1x8d_A 72.3 1.3 3.3e-05 26.0 >1x8d_A Hypothetical protein YIIL; mutarotase, L-rhamnose, biosynthetic protein; HET: RNS; 1.80A {Escherichia coli} SCOP: d.58.4.21 10.1016/j.jmb.2005.03.047
PVCunit3_7 plu1683 PLT_01710 1avo 1avo_B 30.8 20 0.00052 26.9 >1avo_B 11S regulator; proteasome activator, cell adhesion, interferon induction; 2.80A {Homo sapiens} SCOP: a.24.8.1 10.1038/37670
PVCunit3_8 plu1682 PLT_01709 4uhv 4uhv_A 99.9 9.8e-29 2.5e-33 236.1 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVCunit3_9 plu1681 PLT_01708 2ia7 2ia7_A 99.7 9e-21 2.4e-25 127.1 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCunit3_10 plu1680 PLT_01707 4rnd 4rnd_B 32.1 18 0.00048 24.5 >4rnd_B V-type proton ATPase subunit F; alpha helical, rossmann fold, hydrolase, regulatory, couplin; 3.18A {Saccharomyces cerevisiae S288C} PDB: 3j9u_N 3j9v_N 3j9t_N 5d80_o 10.1074/jbc.M114.622688
PVCunit3_11 plu1679 PLT_01706 3h2t 3h2t_A 96.0 0.00014 3.8e-09 73.6 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCunit3_12 plu1678 PLT_01705 5a9c 5a9c_A 33.6 17 0.00044 36.7 >5a9c_A Polyhedrin; viral protein, insect virus occlusion BODY, microcrystal; 1.71A {Antheraea mylitta cypovirus 4} 10.1016/j.jsb.2015.08.009
PVCunit3_13 plu1677 PLT_01704 1ocy 1ocy_A 96.8 1.2e-05 3.1e-10 66.1 >1ocy_A Bacteriophage T4 short tail fibre; structural protein, fibrous protein, LIPO-polysaccharide binding, bacteriophage structural protein; HET: CIT; 1.5A {Bacteriophage T4} SCOP: d.231.1.1 10.1016/S0022-2836(03)00755-1
PVCunit3_14 plu1676 PLT_01703 2qcp 2qcp_X 18.9 48.0 0.0012 25.7 >2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X 10.1110/ps.073021307
PVCunit3_15 plu1675 PLT_01702 5e7p 5e7p_A 99.9 8.1e-27 2.1e-31 236.0 >5e7p_A Cell division control protein CDC48; AAA ATPase, M. smegmatic, RECA, hydrolase; HET: ADP PG4 PGE; 2.51A {Mycobacterium smegmatis} 10.1128/JB.00905-15
PVCunit3_16 plu1674 PLT_01701 4faz 4faz_A 33.5 17 0.00044 20.9 >4faz_A 4-oxalocrotonate isomerase protein; alpha/beta fold, tautomerase; 1.57A {Methylibium petroleiphilum} 10.1016/j.abb.2013.06.016
PVCunit3_17 plu1673 PLT_01700 1vwx 1vwx_f 46.3 7.9 0.00021 26.0 >1vwx_f Ribosomal protein EL33; mammalian, ribosome; 3.40A {Sus scrofa} PDB: 1vwz_f 1vx1_f 1vx4_f 3j3b_f 4cxd_f 4upx_f 4uq1_f 4w20_f 4w22_f 4w25_f 4w27_f Key error. ID likely deprecated.
PVCunit3_18 plu1672 PLT_01699 1wyp 1wyp_A 23.3 34 0.00088 25.8 >1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} No DOI found.
PVCunit3_19 plu1671 PLT_01698 2a7o 2a7o_A 21.3 39 0.001 26.3 >2a7o_A Huntingtin interacting protein B; SRI domain, SRI, HSRI, SET2, HSET2, phosphoctd associating protein, SET2 RPB1-interacting domain, PCID, PCAP; NMR {Homo sapiens} 10.1073/pnas.0506350102
PVCunit4_1 plu1667 PLT_01696 3eaa 3eaa_A 74.4 1.0 2.7e-05 31.1 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVCunit4_2 plu1666 PLT_01695 3j9q 3j9q_A 100.0 1.4e-33 3.8e-38 238.7 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit4_3 plu1665 PLT_01694 3j9q 3j9q_A 100.0 6.2e-35 1.6e-39 255.3 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit4_4 plu1664 PLT_01693 3j9q 3j9q_A 99.9 9.4e-30 2.5e-34 218.9 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit4_5 plu1663 PLT_01692 4tv4 4tv4_A 69.4 1.6 4.3e-05 31.6 >4tv4_A Uncharacterized protein; unknown function, ssgcid, virulence, structural genomics; 2.10A {Burkholderia pseudomallei} No DOI found.
PVCunit4_6 plu1662 PLT_01691 3hk4 3hk4_A 45.6 8.2 0.00021 20.2 >3hk4_A MLR7391 protein; NTF2-like protein, structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, lyase; HET: MSE; 1.96A {Mesorhizobium loti} No DOI found.
PVCunit4_7 plu1661 PLT_01690 5a3a 5a3a_A 47.6 7.3 0.00019 30.9 >5a3a_A SIR2 family protein; transferase, P-ribosyltransferase, metalloprotein, NAD-depen lipoylation, regulatory enzyme, rossmann fold; 1.54A {Streptococcus pyogenes} PDB: 5a3b_A* 5a3c_A* 10.1016/j.molcel.2015.06.013
PVCunit4_8 plu1660 PLT_01689 4uhv 4uhv_A 99.9 1.8e-31 4.7e-36 254.9 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVCunit4_9 plu1659 PLT_01688 2ia7 2ia7_A 99.7 4.8e-22 1.3e-26 135.0 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCunit4_10 plu1658 PLT_01687 2k4r 2k4r_A 30.7 20 0.00053 20.7 >2k4r_A Neurotrypsin; kringle domain, disulfide-rich protein fold, serine endopeptidase, hydrolase, extracellular proteolysis; NMR {Rattus norvegicus} PDB: 2k51_A 10.1021/bi800555z
PVCunit4_11 plu1657 PLT_01686 3h2t 3h2t_A 96.6 2.6e-05 6.8e-10 78.9 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCunit4_12 plu1656 PLT_01685 3p9y 3p9y_A 33.1 17.0 0.00045 36.4 >3p9y_A CG14216, LD40846P; phosphatase, CIS proline, LMW PTP-like fold, RNA polymerase hydrolase; HET: N7P SEP SET IMD PG4; 2.10A {Drosophila melanogaster} PDB: 4imi_B* 4imj_B* 4ygx_B* 3fdf_A 3fmv_A 3omx_A 3omw_A 10.1074/jbc.M110.197129
PVCunit4_13 plu1655 PLT_01684 1ocy 1ocy_A 98.1 3.8e-09 9.9e-14 88.4 >1ocy_A Bacteriophage T4 short tail fibre; structural protein, fibrous protein, LIPO-polysaccharide binding, bacteriophage structural protein; HET: CIT; 1.5A {Bacteriophage T4} SCOP: d.231.1.1 10.1016/S0022-2836(03)00755-1
PVCunit4_14 plu1654 PLT_01683 2kx7 2kx7_A 33.4 17.0 0.00044 31.7 >2kx7_A Sensor-like histidine kinase YOJN; alpha-beta-loop (ABL) domain, phosphotransfer, RCS regulatio two-component system, protein binding; NMR {Escherichia coli} 10.1016/j.str.2011.01.012
PVCunit4_15 plu1653 PLT_01682 5e7p 5e7p_A 99.8 3.5e-25 9e-30 224.4 >5e7p_A Cell division control protein CDC48; AAA ATPase, M. smegmatic, RECA, hydrolase; HET: ADP PG4 PGE; 2.51A {Mycobacterium smegmatis} 10.1128/JB.00905-15
PVCunit4_16 plu1652 PLT_01681 4p7x 4p7x_A 18.4 50.0 0.0013 28.5 >4p7x_A P4H, L-proline CIS-4-hydroxylase; HET: AKG CXS; 1.30A {Rhizobium loti} PDB: 4p7w_A* 10.1021/sb500247a
PVCunit4_17 plu1651 PLT_01680 2yy0 2yy0_A 42.7 9.7 0.00025 26.4 >2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens} No DOI found.
PVCpnf_1 PAU_03353 PAU_03392 5IV5 5IV5_R 99.4 1.7e-16 2.8e-21 108.8 >5IV5_R Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCpnf_2 PAU_03352 PAU_03391 3J9Q 3J9Q_X 100.0 3.7e-34 6e-39 243.2 >3J9Q_X sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCpnf_3 PAU_03351 PAU_03390 3J9Q 3J9Q_X 99.9 9.2e-32 1.5e-36 234.4 >3J9Q_X sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCpnf_4 PAU_03350 PAU_03389 3J9Q 3J9Q_B 99.9 9.6e-28 1.6e-32 207.6 >3J9Q_B sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCpnf_5 PAU_03349 PAU_03388 5IV5 5IV5_S 99.0 2.5e-13 4e-18 93.6 >5IV5_S Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCpnf_6 PAU_03348 PAU_03387 3SLS 3SLS_B 75.1 1.5 2.5e-05 26.7 >3SLS_B Dual specificity mitogen-activated protein kinase; Serine-threonine kinase, Signalling, TRANSFERASE-TRANSFERASE INHIBITOR; HET: 77D, ANP; 2.3A {Homo sapiens}
PVCpnf_7 PAU_03347 PAU_03386 3KXY 3KXY_X 43.4 15.0 0.00024 28.1 >3KXY_X Exoenzyme S synthesis protein C; type-three secretion system, TTSS, T3SS; 2.804A {Pseudomonas aeruginosa}
PVCpnf_8 PAU_03346 PAU_03385 2P5Z 2P5Z_X 99.9 3.5e-28 5.7e-33 219.2 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVCpnf_9 PAU_03345 PAU_03384 2IA7 2IA7_A 99.5 3.7e-18 6e-23 113.3 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVCpnf_10 PAU_03344 PAU_03383 1WEY 1WEY_A 71.0 2.3 3.7e-05 26.9 >1WEY_A calcipressin 1; structural genomics, RRM domain, calcipressin; NMR {Mus musculus} SCOP: d.58.7.1
PVCpnf_11 PAU_03343 PAU_03382 5IV5 5IV5_E 96.4 7.8e-05 1.3e-09 79.3 >5IV5_EB Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCpnf_12 PAU_03342 PAU_03381 6D0Y 6D0Y_B 39.6 19 0.00031 28.6 >6D0Y_B Nuclear cap-binding protein subunit 1; Cap-binding, m7GpppA, transcription, mRNA; HET: IYR, GTA; 2.676A {Homo sapiens}
PVCpnf_13 PAU_03341 PAU_03380 1PDI 1PDI_L 93.7 0.012 2e-07 55.7 >1PDI_L Short tail fiber protein; STRUCTURAL PROTEIN; 12.0A {Enterobacteria phage T4} SCOP: i.19.1.1
PVCpnf_14 PAU_03340 PAU_03379 3C9P 3C9P_A 28.5 37.0 0.00061 31.5 >3C9P_A Uncharacterized protein SP1917; Streptococcus pneumoniae, SP_1917, Structural Genomics; 1.96A {Streptococcus pneumoniae}
PVCpnf_15 PAU_03339 PAU_03378 6FVU 6FVU_H 99.8 1.2e-22 2e-27 197.4 >6FVU_H Proteasome subunit alpha type-1 (E.C.3.4.25.1); 26S proteasome, AAA+ ATPase, hydrolase; HET: ADP, ATP; 4.5A {Saccharomyces cerevisiae (strain ATCC 204508 / S288c)}
PVCpnf_16 PAU_03338 PAU_03377 6AHZ 6AHZ_A 39.9 18.0 0.0003 23.6 >6AHZ_A CMP-N-acetylneuraminate-poly-alpha-2,8-sialyltransferase (E.C.2.4.99.-); Polysialyltransferase, Polysialyltransferase Domain, Polysialic Acid; NMR {N/A}
PVCpnf_17 PAU_03337 PAU_03376 5XNW 5XNW_A 97.3 1.4e-06 2.2e-11 82.4 >5XNW_A Adenylate cyclase ExoY; nucleotidyl cyclase, virulence effectors, type; HET: GOL; 2.201A {Pseudomonas aeruginosa}
PVCpnf_18 PAU_03336 PAU_03375 2I0X 2I0X_A 69.5 2.6 4.2e-05 24.4 >2I0X_A HYPOTHETICAL PROTEIN PF1117 FROM PYROCOCCUS; PF1117, HYPOTHETICAL PROTEIN, PYROCOCCUS FURIOSUS; 2.7A {Pyrococcus furiosus} SCOP: d.58.58.1
PVCpnf_19 PAU_03334 PAU_03374 3L3U 3L3U_A 70.4 2.4 3.9e-05 22.6 >3L3U_A POL polyprotein; DNA INTEGRATION, AIDS, INTEGRASE, ENDONUCLEASE; HET: SO4; 1.4A {Human immunodeficiency virus 1}
PVCpnf_20 PAU_03333 PAU_03373 5Z72 5Z72_B 99.7 6.6e-21 1.1e-25 119.1 >5Z72_B CcpC; CcpC, Complex, Bacillus amyloliquefaciens, Transcriptional; HET: NA, FLC; 2.4A {Bacillus velezensis FZB42}
PVCpnf_21 PAU_03332 PAU_03372 1HQ0 1HQ0_A 100.0 2.5e-54 4.1e-59 390.4 >1HQ0_A CYTOTOXIC NECROTIZING FACTOR 1; BETA SANDWICH, RHO DEAMIDASE, RHO; HET: PO4; 1.83A {Escherichia coli} SCOP: d.194.1.1
PVCpnf_22 PAU_03331 PAU_03371 1JEO 1JEO_A 57.2 6.4 0.0001 23.6 >1JEO_A HYPOTHETICAL PROTEIN MJ1247; RuMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase; HET: CIT; 2.0A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
PVCpnf_23 PAU_03330 PAU_03370 6ET6 6ET6_A 100.0 2.4e-40 3.9e-45 243.5 >6ET6_A Aminotransferase (E.C.2.6.1.-); muramidase, Lysozyme, Acinetobacter baumannii, ANTIMICROBIAL; 1.2A {Acinetobacter baumannii}
PVCpnf_24 PAU_03329 PAU_03369 3VP9 3VP9_A 52.5 8.6 0.00014 29.8 >3VP9_A General transcriptional corepressor TUP1; Four helix bundle, TRANSCRIPTION; HET: DIO; 1.799A {Saccharomyces cerevisiae}
PVCcif_1 PAU_01993 PAU_01961 5IV5 5IV5_R 99.6 8.1e-19 1.3e-23 120.3 >5IV5_R Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCcif_2 PAU_01994 PAU_01962 3J9Q 3J9Q_X 99.9 3.3e-31 5.4e-36 225.9 >3J9Q_X sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCcif_3 PAU_01995 PAU_01963 3J9Q 3J9Q_B 99.9 3.9e-28 6.4e-33 214.6 >3J9Q_B sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCcif_4 PAU_01996 PAU_01964 3J9Q 3J9Q_B 99.9 1e-28 1.7e-33 212.9 >3J9Q_B sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCcif_5 PAU_01997 PAU_01965 5IV5 5IV5_D 99.0 3.9e-13 6.4e-18 92.6 >5IV5_DF Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCcif_6 PAU_01998 PAU_01966 1IV8 1IV8_A 42.6 16 0.00026 29.0 >1IV8_A MALTOOLIGOSYL TREHALOSE SYNTHASE(E.C.5.4.99.15); TREHALOSE SYNTHASE, BETA ALPHA BARREL; 1.9A {Sulfolobus acidocaldarius} SCOP: b.71.1.1, c.1.8.1
PVCcif_7 PAU_01999 PAU_01967 5A3C 5A3C_A 62.8 4.3 7.1e-05 33.0 >5A3C_A SIR2 FAMILY PROTEIN (E.C.2.4.2.30); TRANSFERASE, ADP-RIBOSYLTRANSFERASE, METALLOPROTEIN, NAD-DEPENDENT, LIPOYLATION; HET: GLY, NAD; 2.03A {STREPTOCOCCUS PYOGENES}
PVCcif_8 PAU_02000 PAU_01968 2P5Z 2P5Z_X 99.9 3.6e-29 5.9e-34 225.3 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVCcif_9 PAU_02001 PAU_01969 2IA7 2IA7_A 99.6 6.2e-20 1e-24 122.6 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVCcif_10 PAU_02002 PAU_01970 1JW9 1JW9_B 40.6 18 0.00029 24.8 >1JW9_B MOLYBDOPTERIN BIOSYNTHESIS MOEB PROTEIN, MOLYBDOPTERIN; MoeB: modified Rossmann fold ; HET: SO4; 1.7A {Escherichia coli} SCOP: c.111.1.1
PVCcif_11 PAU_02003 PAU_01971 3H2T 3H2T_B 96.3 0.00012 1.9e-09 74.9 >3H2T_B Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVCcif_12 PAU_02004 PAU_01972 4ORL 4ORL_A 57.3 6.3 0.0001 36.3 >4ORL_A Uncharacterized protein; PF16022 family, DUF4783, Structural Genomics; 1.4A {Bacteroides ovatus}
PVCcif_13 PAU_02005 PAU_01973 2FKK 2FKK_A 97.0 5.3e-06 8.7e-11 69.7 >2FKK_A Baseplate structural protein Gp10; Bacteriophage T4 Baseplate ; HET: EDO; 1.2A {Enterobacteria phage T4}
PVCcif_14 PAU_02006 PAU_01974 3KDE 3KDE_C 17.7 84.0 0.0014 23.2 >3KDE_C PROTEIN/DNA Complex; THAP domain, DNA-binding domain, zinc-finger; 1.74A {Drosophila melanogaster}
PVCcif_15 PAU_02007 PAU_01975 6FVU 6FVU_H 99.7 1.6e-22 2.6e-27 196.3 >6FVU_H Proteasome subunit alpha type-1 (E.C.3.4.25.1); 26S proteasome, AAA+ ATPase, hydrolase; HET: ADP, ATP; 4.5A {Saccharomyces cerevisiae (strain ATCC 204508 / S288c)}
PVCcif_16 PAU_02008 PAU_01976 4I4M 4I4M_6 51.5 9.1 0.00015 27.2 >4I4M_6 50S ribosomal protein LX; 50S ribosomal subunit, ribonucleoprotein, ribosomal; 2.404A {Haloarcula marismortui}
PVCcif_17 PAU_02009 PAU_01977 4FBJ 4FBJ_A 100.0 2.1e-98 3e-103 664.7 >4FBJ_A Hypothetical protein, NEDD8; Effector-Host target complex, Glutamine deamidase; 1.6A {Photorhabdus luminescens subsp. laumondii}
PVCcif_18 PAU_02010 PAU_01978 1IRF 1IRF_A 35.8 23 0.00038 28.6 >1IRF_A INTERFERON REGULATORY FACTOR-2; TRANSCRIPTION REGULATION, WINGED HELIX-TURN-HELIX; NMR {Mus musculus} SCOP: a.4.5.23
PVCcif_19 PAU_02011 PAU_01979 4JXJ 4JXJ_A 43.6 15 0.00024 30.9 >4JXJ_A Ribosomal RNA small subunit methyltransferase; Structural Genomics, NIAID, National Institute; HET: IOD; 2.0A {Rickettsia bellii}
PVCcif_20 PAU_02012 PAU_01980 3IKM 3IKM_D 30.2 33 0.00054 33.8 >3IKM_D DNA polymerase subunit gamma-1 (E.C.2.7.7.7); Human mitochondrial DNA polymerase, Disease; 3.24A {Homo sapiens}
PVClumt_0 PAU_02249 PAU_02208 6EKT 6EKT_A 99.7 6.6e-21 1.1e-25 179.4 >6EKT_A p-47 protein; lipid binding, LIPID BINDING PROTEIN; 1.75A {Clostridium botulinum (strain Kyoto / Type A2)}
PVClumt_1 PAU_02247 PAU_02206 5W5F 5W5F_H 99.4 6.6e-17 1.1e-21 110.9 >5W5F_H Tail tube protein gp19; T4 tail tube, dose limit;{Enterobacteria phage T4 sensu lato}
PVClumt_2 PAU_02246 PAU_02205 3J9Q 3J9Q_X 99.9 5.5e-29 9.1e-34 218.0 >3J9Q_X sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVClumt_4 PAU_02245 PAU_02204 3J9Q 3J9Q_B 99.8 9.6e-26 1.6e-30 194.0 >3J9Q_B sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVClumt_5 PAU_02244 PAU_02203 5IV5 5IV5_D 99.1 1.1e-13 1.8e-18 95.7 >5IV5_DE Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVClumt_6 PAU_02243 PAU_02202 1USD 1USD_A 70.0 2.5 4.1e-05 24.3 >1USD_A VASODILATOR-STIMULATED PHOSPHOPROTEIN; SIGNALING PROTEIN, PHOSPHORYLATION, ACTIN-BINDING, KINASE; 1.7A {HOMO SAPIENS} SCOP: h.1.29.1
PVClumt_7 PAU_02242 PAU_02201 3D1B 3D1B_B 28.0 38.0 0.00063 28.4 >3D1B_B RNA-induced transcriptional silencing complex protein; all alpha motif, RITS complex; 1.7A {Schizosaccharomyces pombe}
PVClumt_8 PAU_02241 PAU_02200 2P5Z 2P5Z_X 99.8 1.7e-23 2.8e-28 188.1 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVClumt_9 PAU_02240 PAU_02199 2IA7 2IA7_A 99.5 7.2e-18 1.2e-22 112.8 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVClumt_10 afp10 PAU_02198 4JIW 4JIW_L 68.9 2.7 4.5e-05 26.9 >4JIW_L Tail-associated lysozyme (E.C.3.2.1.17), Putative uncharacterized; PAAR-repeat motif, membrane piercing, type; 3.402A {Enterobacteria phage T4}
PVClumt_11 afp11 PAU_02197 3H2T 3H2T_B 95.8 0.00043 7.1e-09 68.0 >3H2T_B Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVClumt_12 PAU_02237 PAU_02196 6BCA 6BCA_A 31.8 30 0.00049 30.2 >6BCA_A Transforming protein RhoA, A-kinase anchor; Rho GTPase Guanine Nucleotide Exchange; HET: GSP; 1.995A {Homo sapiens}
PVClumt_13 PAU_02236 PAU_02195 1V1H 1V1H_A 96.0 0.0003 4.9e-09 53.9 >1V1H_A FIBRITIN, FIBER PROTEIN; ADENOVIRUS, CHIMERA, FIBER PROTEIN; 1.9A {HUMAN ADENOVIRUS TYPE 2, BACTERIOPHAGE T4} SCOP: h.1.17.1, b.83.1.1
PVClumt_97 PAU_02235 PAU_02194 6EKT 6EKT_A 99.2 3.4e-15 5.5e-20 147.3 >6EKT_A p-47 protein; lipid binding, LIPID BINDING PROTEIN; 1.75A {Clostridium botulinum (strain Kyoto / Type A2)}
PVClumt_98 PAU_02234 PAU_02193 4AK2 4AK2_A 68.5 2.8 4.6e-05 39.1 >4AK2_A BT_4661; HEPARIN-BINDING PROTEIN, HEPARAN SULPHATE; HET: SGN, IDS; 1.35A {BACTEROIDES THETAIOTAOMICRON}
PVClumt_99 PAU_02233 PAU_02192 4PAC 4PAC_A 17.2 88.0 0.0014 26.6 >4PAC_A histidine phosphotransfer protein 2 from; cytokinin signaling, helical fold, signaling; HET: MES; 2.53A {Arabidopsis thaliana}
PVClumt_15 PAU_02232 PAU_02191 6FVU 6FVU_H 99.8 3.3e-23 5.4e-28 201.5 >6FVU_H Proteasome subunit alpha type-1 (E.C.3.4.25.1); 26S proteasome, AAA+ ATPase, hydrolase; HET: ADP, ATP; 4.5A {Saccharomyces cerevisiae (strain ATCC 204508 / S288c)}
PVClumt_16 PAU_02231 PAU_02190 1PDO 1PDO_A 57.1 6.4 0.0001 30.2 >1PDO_A MANNOSE PERMEASE; PHOSPHOENOLPYRUVATE DEPENDENT PHOSPHOTRANSFERASE SYSTEM, PHOSPHOTRANSFERASE; 1.7A {Escherichia coli} SCOP: c.54.1.1
PVClumt_17 PAU_02230 PAU_02189 4MIX 4MIX_B 100.0 3.8e-50 6.3e-55 429.5 >4MIX_B Putative insecticidal toxin (E.C.2.4.1.-); tyrosine glycosylation, UDP-GlcNAc, nucleotide-binding domain; HET: UD1; 1.8A {Photorhabdus asymbiotica subsp. asymbiotica}
PVClopT_1 PAU_02112 PAU_02074 5IV5 5IV5_S 99.4 5.6e-17 9.1e-22 110.8 >5IV5_S Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVClopT_2 PAU_02111 PAU_02073 3J9Q 3J9Q_B 100.0 8.2e-34 1.3e-38 240.5 >3J9Q_B sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVClopT_4 PAU_02110 PAU_02072 3J9Q 3J9Q_B 99.9 1.3e-30 2.1e-35 224.2 >3J9Q_B sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVClopT_5 PAU_02109 PAU_02071 5IV5 5IV5_p 99.0 5e-13 8.2e-18 92.0 >5IV5_p Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVClopT_6 PAU_02108 PAU_02070 5EUL 5EUL_E 64.4 3.9 6.3e-05 24.0 >5EUL_E SecA, SecY, SecE, AYC08; SecY, SecA, ATPase, channel, PROTEIN; HET: ADP, TBR; 3.7A {Bacillus subtilis (strain 168)}
PVClopT_7 PAU_02107 PAU_02069 1FLT 1FLT_X 29.9 34 0.00056 23.2 >1FLT_X VASCULAR ENDOTHELIAL GROWTH FACTOR, FMS-LIKE; COMPLEX (GROWTH FACTOR-TRANSFERASE), FLT-1 RECEPTOR; 1.7A {Homo sapiens} SCOP: b.1.1.4
PVClopT_8 PAU_02106 PAU_02068 2P5Z 2P5Z_X 99.9 8.2e-31 1.3e-35 235.8 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVClopT_9 PAU_02105 PAU_02067 2IA7 2IA7_A 99.6 5.8e-20 9.5e-25 121.9 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVClopT_10 PAU_02104 PAU_02066 5FMJ 5FMJ_B 50.9 9.5 0.00016 23.4 >5FMJ_B BCL-2-LIKE PROTEIN 1, BAK1 PROTEIN; BCL-XL, BAK, BH3 DOMAIN, APOPTOSIS; HET: EDO; 2.43A {HOMO SAPIENS}
PVClopT_11 PAU_02103 PAU_02065 3H2T 3H2T_B 96.4 8.6e-05 1.4e-09 78.8 >3H2T_B Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVClopT_12 PAU_02102 PAU_02064 1PQX 1PQX_A 38.8 20 0.00032 31.7 >1PQX_A conserved hypothetical protein; ZR18,NMR structure, AUTOSTRUCTURE,SPINS,AUTOASSIGN, Northeast Structural; NMR {Staphylococcus aureus subsp. aureus Mu50} SCOP: d.267.1.1
PVClopT_14 PAU_02101 PAU_02063 2EOS 2EOS_A 27.7 39.0 0.00064 17.2 >2EOS_A B-cell lymphoma 6 protein; zf-C2H2, Structural Genomics, NPPSFA, National; HET: ZN; NMR {Homo sapiens}
PVClopT_15 PAU_02100 PAU_02062 6FVU 6FVU_H 99.7 3.5e-22 5.7e-27 194.0 >6FVU_H Proteasome subunit alpha type-1 (E.C.3.4.25.1); 26S proteasome, AAA+ ATPase, hydrolase; HET: ADP, ATP; 4.5A {Saccharomyces cerevisiae (strain ATCC 204508 / S288c)}
PVClopT_16 PAU_02099 PAU_02061 6AHZ 6AHZ_A 26.5 42.0 0.0007 21.9 >6AHZ_A CMP-N-acetylneuraminate-poly-alpha-2,8-sialyltransferase (E.C.2.4.99.-); Polysialyltransferase, Polysialyltransferase Domain, Polysialic Acid; NMR {N/A}
PVClopT_17 PAU_02098 PAU_02060 6A7H 6A7H_A 100.0 2e-101 4e-106 759.0 >6A7H_A RTX toxin; protein toxins, virulence, TOXIN; HET: SO4; 2.301A {Vibrio vulnificus CMCP6}
PVClopT_18 PAU_02097 PAU_02059 5O9Z 5O9Z_Q 64.0 4.0 6.6e-05 37.9 >5O9Z_Q Pre-mRNA-processing-splicing factor 8, 116 kDa; Spliceosome, pre-mRNA splicing, macromolecular complex; 4.5A {Homo sapiens}
PVClopT_19 PAU_02096 PAU_02058 1UKF 1UKF_A 99.8 1e-24 1.6e-29 182.9 >1UKF_A Avirulence protein AVRPPH3; AvrPphB, AvrPph3, Avirulence, Hypersensitive Response; 1.35A {Pseudomonas syringae pv. phaseolicola} SCOP: d.3.1.10
PVClopT_20 PAU_02095 PAU_02057 4IGL 4IGL_D 100.0 2e-55 3.3e-60 420.2 >4IGL_D YenB, YenC2; Beta-Propeller, RHS, toxin complex, Toxin; HET: GOL; 2.49A {Yersinia}
PVCunit1_1 afp1 PAU_02775 5IV5 5IV5_F 99.5 2e-17 3.2e-22 113.5 >5IV5_FH Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCunit1_2 afp2 PAU_02776 3J9Q 3J9Q_B 100.0 1.1e-35 1.9e-40 252.7 >3J9Q_B sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit1_3 afp3 PAU_02777 3J9Q 3J9Q_X 100.0 1e-34 1.7e-39 254.8 >3J9Q_X sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit1_4 afp4 PAU_02778 3J9Q 3J9Q_B 99.9 4.1e-29 6.7e-34 215.6 >3J9Q_B sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit1_5 afp5 PAU_02779 5IV5 5IV5_I 99.1 1.2e-13 1.9e-18 95.1 >5IV5_IB Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCunit1_6 afp7 PAU_02780 4E71 4E71_A 47.5 12 0.00019 23.5 >4E71_A Plexin-B2; plexin, transmembrane, signaling, rbd, Structural; 2.26A {Homo sapiens}
PVCunit1_7 afp7 PAU_02781 5A3A 5A3A_A 59.7 5.4 8.8e-05 32.5 >5A3A_A SIR2 FAMILY PROTEIN (E.C.2.4.2.30); TRANSFERASE, P-RIBOSYLTRANSFERASE, METALLOPROTEIN, NAD-DEPENDENT, LIPOYLATION; HET: EDO, GLY; 1.54A {STREPTOCOCCUS PYOGENES}
PVCunit1_8 PAU_02796 PAU_02782 2P5Z 2P5Z_X 99.9 2.8e-32 4.7e-37 245.2 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVCunit1_9 afp9 PAU_02783 2IA7 2IA7_A 99.6 4.8e-19 7.8e-24 118.4 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVCunit1_10 afp10 PAU_02784 1YOV 1YOV_A 43.2 15 0.00025 30.9 >1YOV_A Amyloid protein-binding protein 1, Ubiquitin-activating; ubiquitin, NEDD8, E1, APPBP1, UBA3; 2.6A {Homo sapiens} SCOP: c.111.1.2
PVCunit1_11 afp11 PAU_02785 3H2T 3H2T_B 96.4 7.4e-05 1.2e-09 76.4 >3H2T_B Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVCunit1_12 afp12 PAU_02786 2K0B 2K0B_X 22.9 55.0 0.00091 28.5 >2K0B_X Sequestosome-1; ubiquitin binding, helical bundle, three; NMR {Homo sapiens} SCOP: a.5.2.1
PVCunit1_13 PAU_02801 PAU_02787 2FKK 2FKK_A 97.8 5.3e-08 8.7e-13 85.0 >2FKK_A Baseplate structural protein Gp10; Bacteriophage T4 Baseplate ; HET: EDO; 1.2A {Enterobacteria phage T4}
PVCunit1_14 orf25 PAU_02788 4I7W 4I7W_B 24.8 48.0 0.00079 30.2 >4I7W_B Dihydrodipicolinate synthase (E.C.4.2.1.52); TIM BARREL, lysine biosynthesis, pyruvate; HET: LYS; 1.3A {Agrobacterium sp.}
PVCunit1_15 PAU_02803 PAU_02789 5E7P 5E7P_A 99.8 8.1e-24 1.3e-28 209.3 >5E7P_A Cell division control protein Cdc48; AAA ATPase, M. Smegmatic, RecA; HET: GOL, PGE, PG4, ADP; 2.507A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
PVCunit1_16 PAU_02804 PAU_02790 3FM2 3FM2_A 24.5 49.0 0.0008 25.5 >3FM2_A Uncharacterized protein, distantly related to; STRUCTURAL GENOMICS, JOINT CENTER FOR; HET: ACT; 1.8A {Anabaena variabilis ATCC 29413}
PVCunit1_17 hrpN PAU_02791 2I88 2I88_A 79.9 0.87 1.4e-05 40.9 >2I88_A Colicin-E1; protein-membrane interactions, toxin-membrane interactions, toxin; 2.5A {Escherichia coli}
PVCunit1_18 PAU_02806 PAU_02792 5SVA 5SVA_V 36.3 23 0.00037 31.7 >5SVA_V DNA-directed RNA polymerase II subunit; Transcriptional Initiation, Mediator, Pre-Initiation Complex; 15.3A {Saccharomyces cerevisiae}
PVCunit1_19 PAU_02807 PAU_02793 5E24 5E24_D 26.0 44.0 0.00072 24.2 >5E24_D Maltose-binding periplasmic protein, Protein hairless; Notch Signaling, Suppressor of Hairless; HET: EDO, MTT; 2.14A {Escherichia coli O157:H7}
PVCunit1_20 PAU_02808 PAU_02794 2XR4 2XR4_B 100.0 2.3e-34 3.8e-39 230.8 >2XR4_B LECTIN; SUGAR BINDING PROTEIN, LUNG, PATHOGEN; HET: SO4; 1.9A {BURKHOLDERIA CENOCEPACIA}
PVCpnf_1 PAK_3544 PAK_03203 5IV5 5IV5_F 99.4 4.9e-17 8e-22 111.5 >5IV5_FH Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCpnf_2 PAK_3543 PAK_03202 3J9Q 3J9Q_B 100.0 5.8e-34 9.6e-39 241.9 >3J9Q_B sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCpnf_3 PAK_3542 PAK_03201 3J9Q 3J9Q_B 99.9 4.7e-31 7.7e-36 230.3 >3J9Q_B sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCpnf_4 PAK_3541 PAK_03200 3J9Q 3J9Q_X 99.9 2.4e-28 3.9e-33 210.9 >3J9Q_X sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCpnf_5 PAK_3540 PAK_03199 5IV5 5IV5_D 99.0 2.2e-13 3.6e-18 93.8 >5IV5_DF Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCpnf_6 PAK_3539 PAK_03198 3SLS 3SLS_B 75.1 1.5 2.5e-05 26.7 >3SLS_B Dual specificity mitogen-activated protein kinase; Serine-threonine kinase, Signalling, TRANSFERASE-TRANSFERASE INHIBITOR; HET: 77D, ANP; 2.3A {Homo sapiens}
PVCpnf_7 PAK_3538 PAK_03197 4LID 4LID_B 25.8 45.0 0.00073 27.5 >4LID_B A-100; VIRAL PROTEIN, Hyperthermophilic viral protein; 3.0A {Sulfolobus spindle-shaped virus 1}
PVCpnf_8 PAK_3537 PAK_03196 2P5Z 2P5Z_X 99.9 2.3e-28 3.7e-33 220.4 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVCpnf_9 PAK_3536 PAK_03195 2IA7 2IA7_A 99.5 8.7e-18 1.4e-22 111.5 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVCpnf_10 PAK_3535 PAK_03194 1UKF 1UKF_A 56.9 6.5 0.00011 30.5 >1UKF_A Avirulence protein AVRPPH3; AvrPphB, AvrPph3, Avirulence, Hypersensitive Response; 1.35A {Pseudomonas syringae pv. phaseolicola} SCOP: d.3.1.10
PVCpnf_11 PAK_3534 PAK_03193 3H2T 3H2T_B 96.2 0.00014 2.3e-09 72.7 >3H2T_B Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVCpnf_12 PAK_3533 PAK_03192 6D0Y 6D0Y_B 40.6 17.0 0.00029 28.7 >6D0Y_B Nuclear cap-binding protein subunit 1; Cap-binding, m7GpppA, transcription, mRNA; HET: IYR, GTA; 2.676A {Homo sapiens}
PVCpnf_13 PAK_3532 PAK_03191 2FKK 2FKK_A 96.9 8.8e-06 1.4e-10 71.8 >2FKK_A Baseplate structural protein Gp10; Bacteriophage T4 Baseplate ; HET: EDO; 1.2A {Enterobacteria phage T4}
PVCpnf_14 PAK_3531 PAK_03190 5JY5 5JY5_B 26.3 43.0 0.00071 23.5 >5JY5_B Thioredoxin; Thioredoxin 1 Cryptococcus neoformans X-ray; HET: SO4, GOL; 1.8A {Cryptococcus neoformans var. grubii serotype A}
PVCpnf_15 PAK_3530 PAK_03189 6FVU 6FVU_H 99.8 8.5e-23 1.4e-27 198.4 >6FVU_H Proteasome subunit alpha type-1 (E.C.3.4.25.1); 26S proteasome, AAA+ ATPase, hydrolase; HET: ADP, ATP; 4.5A {Saccharomyces cerevisiae (strain ATCC 204508 / S288c)}
PVCpnf_16 PAK_3529 PAK_03188 6AHZ 6AHZ_A 38.1 20 0.00033 23.4 >6AHZ_A CMP-N-acetylneuraminate-poly-alpha-2,8-sialyltransferase (E.C.2.4.99.-); Polysialyltransferase, Polysialyltransferase Domain, Polysialic Acid; NMR {N/A}
PVCpnf_17 PAK_3527 PAK_03187 4WYQ 4WYQ_E 44.5 14 0.00023 18.2 >4WYQ_E Dicer (E.C.3.1.26.3), Trans-activation-responsive RNA-binding protein; RNA interference, microRNA, dsRBP, dsRBD; 3.2A {Homo sapiens}
PVCpnf_18 PAK_3526 PAK_03186 3SZP 3SZP_A 99.7 3.6e-21 5.9e-26 120.2 >3SZP_A Transcriptional regulator, LysR family; winged helix-turn helix, DNA-binding, transcription; 2.202A {Vibrio cholerae}
PVCpnf_19 PAK_3525 PAK_03185 4MIX 4MIX_B 99.9 9.5e-32 1.6e-36 228.1 >4MIX_B Putative insecticidal toxin (E.C.2.4.1.-); tyrosine glycosylation, UDP-GlcNAc, nucleotide-binding domain; HET: UD1; 1.8A {Photorhabdus asymbiotica subsp. asymbiotica}
PVCpnf_20 PAK_3524 PAK_03184 4LDO 4LDO_A 99.4 2.1e-16 3.5e-21 97.6 >4LDO_A Lysozyme, Beta-2 adrenergic receptor (E.C.3.2.1.17); G protein coupled receptor, MEMBRANE; HET: ALE, 1WV; 3.2A {Enterobacteria phage T4, Homo sapiens}
PVCpnf_21 PAK_3523 PAK_03183 6ET6 6ET6_A 99.7 1.7e-22 2.8e-27 138.6 >6ET6_A Aminotransferase (E.C.2.6.1.-); muramidase, Lysozyme, Acinetobacter baumannii, ANTIMICROBIAL; 1.2A {Acinetobacter baumannii}
PVCpnf_22 PAK_3522 PAK_03182 5KKV 5KKV_A 62.7 4.4 7.2e-05 26.0 >5KKV_A GCN4-p2L; GCN4 coiled-coil, PROTEIN FIBRIL; 1.9A {N/A}
PVCpnf_23 PAK_3521 PAK_03181 6ET6 6ET6_A 100.0 9e-41 1.5e-45 245.8 >6ET6_A Aminotransferase (E.C.2.6.1.-); muramidase, Lysozyme, Acinetobacter baumannii, ANTIMICROBIAL; 1.2A {Acinetobacter baumannii}
PVCcif_1 PAK_1969 PAK_01787 5IV5 5IV5_S 99.6 1.1e-18 1.8e-23 119.6 >5IV5_S Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCcif_2 PAK_1970 PAK_01788 3J9Q 3J9Q_X 99.9 5.1e-32 8.3e-37 231.0 >3J9Q_X sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCcif_3 PAK_1971 PAK_01789 3J9Q 3J9Q_X 99.9 1.1e-29 1.7e-34 224.5 >3J9Q_X sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCcif_4 PAK_1972 PAK_01790 3J9Q 3J9Q_X 99.9 8.3e-29 1.4e-33 213.5 >3J9Q_X sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCcif_5 PAK_1973 PAK_01791 5IV5 5IV5_B 98.9 6.7e-13 1.1e-17 91.4 >5IV5_BC Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCcif_6 PAK_1974 PAK_01792 1IV8 1IV8_A 42.0 16 0.00026 28.9 >1IV8_A MALTOOLIGOSYL TREHALOSE SYNTHASE(E.C.5.4.99.15); TREHALOSE SYNTHASE, BETA ALPHA BARREL; 1.9A {Sulfolobus acidocaldarius} SCOP: b.71.1.1, c.1.8.1
PVCcif_7 PAK_1975 PAK_01793 5A3C 5A3C_A 66.2 3.4 5.6e-05 33.6 >5A3C_A SIR2 FAMILY PROTEIN (E.C.2.4.2.30); TRANSFERASE, ADP-RIBOSYLTRANSFERASE, METALLOPROTEIN, NAD-DEPENDENT, LIPOYLATION; HET: GLY, NAD; 2.03A {STREPTOCOCCUS PYOGENES}
PVCcif_8 PAK_1976 PAK_01794 2P5Z 2P5Z_X 99.9 3.7e-30 6.1e-35 231.6 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVCcif_9 PAK_1977 PAK_01795 2IA7 2IA7_A 99.6 1.9e-19 3.1e-24 120.3 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVCcif_10 PAK_1978 PAK_01796 5C2Y 5C2Y_A 35.5 24 0.00039 27.4 >5C2Y_A RNA polymerase II subunit B1; regulator of transcription, zinc finger; HET: SO4; 2.6A {Saccharomyces cerevisiae}
PVCcif_11 PAK_1979 PAK_01797 3H2T 3H2T_B 96.3 0.0001 1.7e-09 75.1 >3H2T_B Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVCcif_12 PAK_1980 PAK_01798 6BCA 6BCA_A 63.8 4.1 6.7e-05 35.6 >6BCA_A Transforming protein RhoA, A-kinase anchor; Rho GTPase Guanine Nucleotide Exchange; HET: GSP; 1.995A {Homo sapiens}
PVCcif_13 PAK_1981 PAK_01799 2FKK 2FKK_A 97.3 1.7e-06 2.8e-11 72.6 >2FKK_A Baseplate structural protein Gp10; Bacteriophage T4 Baseplate ; HET: EDO; 1.2A {Enterobacteria phage T4}
PVCcif_14 PAK_1982 PAK_01800 3Q1C 3Q1C_A 19.4 73.0 0.0012 34.2 >3Q1C_A LEE-encoded effector EspG; VirA fold, virulence factor, PAK; 1.596A {Escherichia coli O127:H6}
PVCcif_15 PAK_1983 PAK_01801 6FVU 6FVU_H 99.7 3.5e-22 5.7e-27 194.1 >6FVU_H Proteasome subunit alpha type-1 (E.C.3.4.25.1); 26S proteasome, AAA+ ATPase, hydrolase; HET: ADP, ATP; 4.5A {Saccharomyces cerevisiae (strain ATCC 204508 / S288c)}
PVCcif_16 PAK_1984 PAK_01802 3FXD 3FXD_B 34.1 26.0 0.00043 28.1 >3FXD_B Protein IcmQ, Protein IcmR; 4 helix bundle, helix-turn-helix, UNKNOWN; 2.1A {Legionella pneumophila}
PVCcif_17 PAK_1985 PAK_01803 4FBJ 4FBJ_A 100.0 9e-93 1.5e-97 629.0 >4FBJ_A Hypothetical protein, NEDD8; Effector-Host target complex, Glutamine deamidase; 1.6A {Photorhabdus luminescens subsp. laumondii}
PVCcif_18 PAK_1986 PAK_01804 2I71 2I71_A 28.5 37 0.00061 31.7 >2I71_A Hypothetical protein; Structural Genomics, APC6294, Conserved hypothetical; 1.7A {Sulfolobus solfataricus} SCOP: e.72.1.1
PVCcif_19 PAK_1987 PAK_01805 1LTA 1LTA_A 97.5 3.8e-07 6.2e-12 71.9 >1LTA_A HEAT-LABILE ENTEROTOXIN (LT) COMPLEX WITH; ENTEROTOXIN; HET: GAL; 2.2A {Escherichia coli} SCOP: d.166.1.1
PVCcif_20 PAK_1988 PAK_01806 5NB9 5NB9_A 61.0 4.9 8.1e-05 32.3 >5NB9_A RNA chaperone ProQ; FinO, ProQ, RNA, chaperone; NMR {Escherichia coli O45:K1 (strain S88 / ExPEC)}
PVClumt_0 PAK_2217 PAK_02015 6EKT 6EKT_A 99.6 8.7e-20 1.4e-24 171.8 >6EKT_A p-47 protein; lipid binding, LIPID BINDING PROTEIN; 1.75A {Clostridium botulinum (strain Kyoto / Type A2)}
PVClumt_1 PAK_2216 PAK_02014 5W5F 5W5F_H 99.4 6.1e-17 1e-21 111.1 >5W5F_H Tail tube protein gp19; T4 tail tube, dose limit;{Enterobacteria phage T4 sensu lato}
PVClumt_2 PAK_2215 PAK_02013 3J9Q 3J9Q_B 99.6 1.2e-18 1.9e-23 149.7 >3J9Q_B sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVClumt_3 PAK_2214 PAK_02012 3J9Q 3J9Q_B 97.8 5.6e-08 9.2e-13 68.7 >3J9Q_B sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVClumt_4 PAK_2213 PAK_02011 3J9Q 3J9Q_B 99.9 2.9e-26 4.7e-31 197.2 >3J9Q_B sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVClumt_5 PAK_2212 PAK_02010 5W5F 5W5F_H 99.2 2.2e-14 3.5e-19 99.1 >5W5F_H Tail tube protein gp19; T4 tail tube, dose limit;{Enterobacteria phage T4 sensu lato}
PVClumt_6 PAK_2211 PAK_02009 1USD 1USD_A 70.9 2.3 3.8e-05 24.5 >1USD_A VASODILATOR-STIMULATED PHOSPHOPROTEIN; SIGNALING PROTEIN, PHOSPHORYLATION, ACTIN-BINDING, KINASE; 1.7A {HOMO SAPIENS} SCOP: h.1.29.1
PVClumt_7 PAK_2210 PAK_02008 3D1B 3D1B_A 28.2 38.0 0.00062 28.4 >3D1B_A RNA-induced transcriptional silencing complex protein; all alpha motif, RITS complex; 1.7A {Schizosaccharomyces pombe}
PVClumt_8 PAK_2209 PAK_02007 2P5Z 2P5Z_X 99.8 2.4e-23 4e-28 187.1 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVClumt_9 PAK_2208 PAK_02006 2IA7 2IA7_A 99.5 1e-17 1.7e-22 112.0 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVClumt_10 PAK_2207 PAK_02005 4JIW 4JIW_L 69.9 2.5 4.1e-05 27.1 >4JIW_L Tail-associated lysozyme (E.C.3.2.1.17), Putative uncharacterized; PAAR-repeat motif, membrane piercing, type; 3.402A {Enterobacteria phage T4}
PVClumt_11 PAK_2206 PAK_02004 5H5Z 5H5Z_B 28.7 37 0.0006 20.1 >5H5Z_B MHC class I antigen, Beta-2-microglobulin; MHC, IMMUNOLOGY, IMMUNE SYSTEM-TRANSRERASE COMPLEX; 1.74A {Ctenopharyngodon idella}
PVClumt_96 PAK_2205 PAK_02003 3H2T 3H2T_B 94.4 0.0052 8.5e-08 52.9 >3H2T_B Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVClumt_12 PAK_2204 PAK_02002 1FHO 1FHO_A 30.0 34 0.00055 27.4 >1FHO_A UNC-89; Pleckstrin Homology domain, electrostatics, muscle; NMR {Caenorhabditis elegans} SCOP: b.55.1.1
PVClumt_13 PAK_2203 PAK_02001 1V1H 1V1H_A 92.6 0.028 4.5e-07 42.9 >1V1H_A FIBRITIN, FIBER PROTEIN; ADENOVIRUS, CHIMERA, FIBER PROTEIN; 1.9A {HUMAN ADENOVIRUS TYPE 2, BACTERIOPHAGE T4} SCOP: h.1.17.1, b.83.1.1
PVClumt_97 PAK_2202 PAK_02000 6EKT 6EKT_A 99.3 6.2e-16 1e-20 152.5 >6EKT_A p-47 protein; lipid binding, LIPID BINDING PROTEIN; 1.75A {Clostridium botulinum (strain Kyoto / Type A2)}
PVClumt_98 PAK_2201 PAK_01999 4AK2 4AK2_A 68.6 2.8 4.6e-05 39.1 >4AK2_A BT_4661; HEPARIN-BINDING PROTEIN, HEPARAN SULPHATE; HET: SGN, IDS; 1.35A {BACTEROIDES THETAIOTAOMICRON}
PVClumt_99 PAK_2200 PAK_01998 3K8P 3K8P_C 33.4 27.0 0.00044 34.3 >3K8P_C Dsl1, Protein transport protein SEC39; Intracellular trafficking, Dsl1 complex, multisubunit; 2.6A {Kluyveromyces lactis}
PVClumt_15 PAK_2199 PAK_01997 6FVU 6FVU_H 99.8 1.5e-23 2.4e-28 203.9 >6FVU_H Proteasome subunit alpha type-1 (E.C.3.4.25.1); 26S proteasome, AAA+ ATPase, hydrolase; HET: ADP, ATP; 4.5A {Saccharomyces cerevisiae (strain ATCC 204508 / S288c)}
PVClumt_16 PAK_2198 PAK_01996 1PDO 1PDO_A 56.8 6.5 0.00011 30.1 >1PDO_A MANNOSE PERMEASE; PHOSPHOENOLPYRUVATE DEPENDENT PHOSPHOTRANSFERASE SYSTEM, PHOSPHOTRANSFERASE; 1.7A {Escherichia coli} SCOP: c.54.1.1
PVClumt_17 PAK_2197 PAK_01995 1WRD 1WRD_A 44.0 14.0 0.00023 33.0 >1WRD_A Target of Myb protein 1/Ubiquitin; THREE-HELIX BUNDLE, UBIQUITIN-BINDING PROTEIN, PROTEIN; 1.75A {Bos taurus} SCOP: a.7.8.1
PVClumt_18 PAK_2195 PAK_01994 4MIX 4MIX_B 100.0 1.9e-38 3.1e-43 307.8 >4MIX_B Putative insecticidal toxin (E.C.2.4.1.-); tyrosine glycosylation, UDP-GlcNAc, nucleotide-binding domain; HET: UD1; 1.8A {Photorhabdus asymbiotica subsp. asymbiotica}
PVClopT_1 PAK_2092 PAK_01896 5IV5 5IV5_p 99.4 5.9e-17 9.7e-22 110.7 >5IV5_p Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVClopT_2 PAK_2091 PAK_01895 3J9Q 3J9Q_B 100.0 5.6e-34 9.1e-39 241.6 >3J9Q_B sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVClopT_4 PAK_2090 PAK_01894 3J9Q 3J9Q_X 99.9 7.5e-29 1.2e-33 213.3 >3J9Q_X sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVClopT_5 PAK_2089 PAK_01893 5IV5 5IV5_D 98.9 8.6e-13 1.4e-17 90.9 >5IV5_DE Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVClopT_6 PAK_2088 PAK_01892 4F6T 4F6T_B 49.6 10 0.00017 24.6 >4F6T_B Molybdenum storage protein subunit beta; molybdenum storage, ATP hydrolyzation, hexamer; HET: ATP, 6M0, 8M0; 1.6A {Azotobacter vinelandii}
PVClopT_7 PAK_2087 PAK_01891 5A3A 5A3A_A 63.1 4.3 7e-05 33.0 >5A3A_A SIR2 FAMILY PROTEIN (E.C.2.4.2.30); TRANSFERASE, P-RIBOSYLTRANSFERASE, METALLOPROTEIN, NAD-DEPENDENT, LIPOYLATION; HET: EDO, GLY; 1.54A {STREPTOCOCCUS PYOGENES}
PVClopT_8 PAK_2086 PAK_01890 2P5Z 2P5Z_X 99.9 2.2e-29 3.6e-34 226.7 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVClopT_9 PAK_2085 PAK_01889 2IA7 2IA7_A 99.6 3.7e-20 6.1e-25 121.3 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVClopT_10 PAK_2084 PAK_01888 3OJO 3OJO_A 65.0 3.7 6.1e-05 32.9 >3OJO_A Cap5O; Rossmann fold, complex with cofactor; HET: NAD, PDC; 2.5A {Staphylococcus aureus}
PVClopT_11 PAK_2083 PAK_01887 3H2T 3H2T_B 96.0 0.00026 4.3e-09 75.2 >3H2T_B Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVClopT_12 PAK_2082 PAK_01886 2FFM 2FFM_A 35.9 23 0.00038 31.3 >2FFM_A SAV1430; alpha-beta protein., Structural Genomics, PSI; 2.51A {Staphylococcus aureus subsp. aureus Mu50} SCOP: d.267.1.1
PVClopT_14 PAK_2081 PAK_01885 1Z8U 1Z8U_C 28.5 37.0 0.00061 30.2 >1Z8U_C Alpha-hemoglobin stabilizing protein, Hemoglobin alpha; alpha haemoglobin, AHSP, oxidation, interaction; HET: HEM; 2.4A {Homo sapiens} SCOP: a.7.11.1
PVClopT_15 PAK_2080 PAK_01884 6FVU 6FVU_H 99.8 4.7e-23 7.8e-28 200.0 >6FVU_H Proteasome subunit alpha type-1 (E.C.3.4.25.1); 26S proteasome, AAA+ ATPase, hydrolase; HET: ADP, ATP; 4.5A {Saccharomyces cerevisiae (strain ATCC 204508 / S288c)}
PVClopT_16 PAK_2079 PAK_01883 5Y81 5Y81_E 33.2 27 0.00045 24.2 >5Y81_E Serine/threonine-protein kinase MEC1 (E.C.2.7.11.1), DNA; NuA4 complex, Histone acetyltransferases, Tra1/TRRAP; 4.7A {Saccharomyces cerevisiae S288c}
PVClopT_17 PAK_2078 PAK_01882 3WYG 3WYG_D 35.4 24 0.00039 23.6 >3WYG_D Gsp1p, Exportin-1, cAMP-dependent protein kinase; HEAT REPEAT, NUCLEAR EXPORT, GTP-BINDING; HET: GTP; 2.15A {Saccharomyces cerevisiae AWRI796}
PVClopT_18 PAK_2077 PAK_01881 1UKF 1UKF_A 99.8 2.1e-23 3.5e-28 175.0 >1UKF_A Avirulence protein AVRPPH3; AvrPphB, AvrPph3, Avirulence, Hypersensitive Response; 1.35A {Pseudomonas syringae pv. phaseolicola} SCOP: d.3.1.10
PVClopT_19 PAK_2075 PAK_01880 1T3C 1T3C_A 96.2 0.00014 2.4e-09 81.2 >1T3C_A neurotoxin type E (E.C.3.4.24.69); Clostridium botulinum, catalytic domain, E212Q; 1.9A {Clostridium botulinum} SCOP: d.92.1.7
PVCunit1_1 PAK_2876 PAK_02606 5IV5 5IV5_F 99.5 1.6e-17 2.6e-22 113.9 >5IV5_FI Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCunit1_2 PAK_2877 PAK_02607 3J9Q 3J9Q_X 100.0 1.9e-33 3.1e-38 239.1 >3J9Q_X sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit1_3 PAK_2878 PAK_02608 3J9Q 3J9Q_X 100.0 4.2e-34 6.9e-39 250.4 >3J9Q_X sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit1_4 PAK_2879 PAK_02609 3J9Q 3J9Q_X 99.9 4e-29 6.5e-34 215.6 >3J9Q_X sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit1_5 PAK_2880 PAK_02610 5IV5 5IV5_F 99.0 1.9e-13 3.1e-18 94.1 >5IV5_FI Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCunit1_6 PAK_2881 PAK_02611 5T87 5T87_F 77.8 1.1 1.9e-05 28.5 >5T87_F CdiI immunity protein, CdiA toxin; Contact-dependent growth inhibition, toxin, antitoxin; HET: MSE; 2.4A {Cupriavidus taiwanensis (strain DSM 17343 / BCRC 17206 / CIP 107171 / LMG 19424 / R1)}
PVCunit1_7 PAK_2882 PAK_02612 5A3A 5A3A_A 68.3 2.9 4.7e-05 34.0 >5A3A_A SIR2 FAMILY PROTEIN (E.C.2.4.2.30); TRANSFERASE, P-RIBOSYLTRANSFERASE, METALLOPROTEIN, NAD-DEPENDENT, LIPOYLATION; HET: EDO, GLY; 1.54A {STREPTOCOCCUS PYOGENES}
PVCunit1_8 PAK_2883 PAK_02613 2P5Z 2P5Z_X 99.9 1.5e-31 2.5e-36 240.6 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVCunit1_9 PAK_2884 PAK_02614 2IA7 2IA7_A 99.6 6.1e-19 1e-23 117.9 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVCunit1_10 PAK_2885 PAK_02615 1JWB 1JWB_B 52.0 8.9 0.00015 26.2 >1JWB_B MOLYBDOPTERIN BIOSYNTHESIS MOEB PROTEIN, MOLYBDOPTERIN; MoeB: modified Rossmann fold ; HET: AMP; 2.1A {Escherichia coli} SCOP: c.111.1.1
PVCunit1_11 PAK_2886 PAK_02616 3H2T 3H2T_B 96.4 7e-05 1.1e-09 76.5 >3H2T_B Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVCunit1_12 PAK_2887 PAK_02617 5WH9 5WH9_C 33.2 27 0.00045 27.8 >5WH9_C 4-hydroxybenzoyl-CoA thioesterase; Gentisyl CoA Thioesterase, Hotdog Fold; 2.3A {Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)}
PVCunit1_13 PAK_2888 PAK_02618 2FKK 2FKK_A 97.6 2.7e-07 4.4e-12 82.7 >2FKK_A Baseplate structural protein Gp10; Bacteriophage T4 Baseplate ; HET: EDO; 1.2A {Enterobacteria phage T4}
PVCunit1_14 PAK_2889 PAK_02619 4E2I 4E2I_W 30.8 32.0 0.00052 25.8 >4E2I_W Large T antigen, DNA polymerase; replication initiation, Hydrolase-DNA binding complex; HET: ZN; 5.0A {Simian virus 40}
PVCunit1_15 PAK_2890 PAK_02620 6FVU 6FVU_H 99.8 4.6e-23 7.5e-28 200.2 >6FVU_H Proteasome subunit alpha type-1 (E.C.3.4.25.1); 26S proteasome, AAA+ ATPase, hydrolase; HET: ADP, ATP; 4.5A {Saccharomyces cerevisiae (strain ATCC 204508 / S288c)}
PVCunit1_16 PAK_2891 PAK_02621 3GGM 3GGM_A 49.2 11.0 0.00017 23.7 >3GGM_A uncharacterized protein BT9727_2919; Bacillus cereus group., Structural Genomics; 2.0A {Bacillus thuringiensis serovar konkukian}
PVCunit1_17 PAK_2892 PAK_02622 2I88 2I88_A 81.6 0.69 1.1e-05 40.9 >2I88_A Colicin-E1; protein-membrane interactions, toxin-membrane interactions, toxin; 2.5A {Escherichia coli}
PVCunit1_18 PAK_2893 PAK_02623 1T2K 1T2K_A 34.8 25 0.00041 28.4 >1T2K_A Interferon regulatory factor 3/Transcription factor; PROTEIN DNA COMPLEX, transcription, Transcription-DNA; 3.0A {Homo sapiens} SCOP: a.4.5.23
PVCunit1_19 PAK_2894 PAK_02624 2OE3 2OE3_B 67.8 3.0 4.9e-05 27.7 >2OE3_B Thioredoxin-3; ELECTRON TRANSPORT, ALPHA/BETA SANDWICH, oxidized; 1.8A {Saccharomyces cerevisiae}
PVCunit1_20 PAK_2895 PAK_02625 2FKK 2FKK_A 96.3 9.9e-05 1.6e-09 58.2 >2FKK_A Baseplate structural protein Gp10; Bacteriophage T4 Baseplate ; HET: EDO; 1.2A {Enterobacteria phage T4}
PVCunit1_21 PAK_2896 PAK_02626 2XR4 2XR4_B 100.0 2.3e-35 3.7e-40 236.4 >2XR4_B LECTIN; SUGAR BINDING PROTEIN, LUNG, PATHOGEN; HET: SO4; 1.9A {BURKHOLDERIA CENOCEPACIA}
PVCcif_1 plu2531 PLT_02568 5IV5 5IV5_S 99.5 3e-18 4.9e-23 117.5 >5IV5_S Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCcif_2 plu2530 PLT_02567 3J9Q 3J9Q_B 99.9 1.7e-31 2.8e-36 227.6 >3J9Q_B sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCcif_3 plu2529 PLT_02566 3J9Q 3J9Q_B 100.0 3e-35 4.9e-40 258.0 >3J9Q_B sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCcif_4 plu2528 PLT_02565 3J9Q 3J9Q_B 99.9 1.7e-28 2.7e-33 211.6 >3J9Q_B sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCcif_5 plu2527 PLT_02564 5IV5 5IV5_p 99.0 2.2e-13 3.6e-18 93.8 >5IV5_p Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCcif_6 plu2526 PLT_02563 1USE 1USE_A 70.0 2.5 4.1e-05 24.3 >1USE_A VASODILATOR-STIMULATED PHOSPHOPROTEIN; SIGNALING PROTEIN,, SIGNALING PROTEIN; 1.3A {HOMO SAPIENS} SCOP: h.1.29.1
PVCcif_7 plu2525 PLT_02562 3DXI 3DXI_B 28.7 37 0.0006 28.8 >3DXI_B Putative aldolase; TIM barrel, 11107n, PSI2, NYSGXRC; 2.04A {Bacteroides vulgatus ATCC 8482}
PVCcif_8 plu2524 PLT_02561 2P5Z 2P5Z_X 99.9 4.6e-29 7.6e-34 224.6 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVCcif_9 plu2523 PLT_02560 2IA7 2IA7_A 99.7 3.6e-21 5.8e-26 127.4 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVCcif_10 plu2522 PLT_02559 4JIW 4JIW_L 63.7 4.1 6.7e-05 26.0 >4JIW_L Tail-associated lysozyme (E.C.3.2.1.17), Putative uncharacterized; PAAR-repeat motif, membrane piercing, type; 3.402A {Enterobacteria phage T4}
PVCcif_11 plu2521 PLT_02558 3H2T 3H2T_B 96.3 9.5e-05 1.6e-09 75.6 >3H2T_B Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVCcif_12 plu2520 PLT_02557 4D0N 4D0N_B 71.5 2.2 3.6e-05 39.6 >4D0N_B TRANSFORMING PROTEIN RHOA (E.C.3.6.5.2), A-KINASE; CELL CYCLE, AKAP13, LBC, AKAP-LBC; HET: GDP, SO4; 2.1A {HOMO SAPIENS}
PVCcif_13 plu2519 PLT_02556 2FKK 2FKK_A 96.6 3.8e-05 6.2e-10 67.7 >2FKK_A Baseplate structural protein Gp10; Bacteriophage T4 Baseplate ; HET: EDO; 1.2A {Enterobacteria phage T4}
PVCcif_14 plu2518 PLT_02555 5J4U 5J4U_A 47.3 12 0.00019 31.0 >5J4U_A Glutathione transferase family protein; GST, Complex, GSH, TRANSFERASE; HET: GSH; 1.249A {Populus trichocarpa}
PVCcif_15 plu2517 PLT_02554 6FVX 6FVX_M 99.8 3.4e-23 5.5e-28 199.5 >6FVX_M Proteasome subunit alpha type-1 (E.C.3.4.25.1); 26S proteasome, AAA+ ATPase, hydrolase; HET: ATP, ADP; 4.9A {Saccharomyces cerevisiae (strain ATCC 204508 / S288c)}
PVCcif_16 plu2516 PLT_02553 3GGM 3GGM_A 32.5 29 0.00047 22.9 >3GGM_A uncharacterized protein BT9727_2919; Bacillus cereus group., Structural Genomics; 2.0A {Bacillus thuringiensis serovar konkukian}
PVCcif_17 plu2515 PLT_02552 4FBJ 4FBJ_A 100.0 1e-103 2e-108 700.8 >4FBJ_A Hypothetical protein, NEDD8; Effector-Host target complex, Glutamine deamidase; 1.6A {Photorhabdus luminescens subsp. laumondii}
PVCcif_18 plu2514 PLT_02551 1LBU 1LBU_A 36.7 22 0.00036 28.1 >1LBU_A MURAMOYL-PENTAPEPTIDE CARBOXYPEPTIDASE; HYDROLASE, NUCLEAR RECEPTOR, CARBOXYPEPTIDASE; 1.8A {Streptomyces albus} SCOP: d.65.1.1, a.20.1.1
PVClopT_1 plu2385 PLT_02424 5IV5 5IV5_p 99.4 3.9e-17 6.3e-22 112.0 >5IV5_p Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVClopT_2 plu2386 PLT_02425 3J9Q 3J9Q_B 99.9 1e-31 1.6e-36 228.6 >3J9Q_B sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVClopT_3 plu2387 PLT_02426 3J9Q 3J9Q_X 99.9 1.6e-32 2.5e-37 238.6 >3J9Q_X sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVClopT_4 plu2388 PLT_02427 3J9Q 3J9Q_X 99.9 8.8e-32 1.4e-36 231.1 >3J9Q_X sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVClopT_5 plu2389 PLT_02428 5IV5 5IV5_B 98.8 3.9e-12 6.5e-17 87.6 >5IV5_BB Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVClopT_6 plu2390 PLT_02429 1RH4 1RH4_A 49.4 10 0.00017 21.7 >1RH4_A RIGHT-HANDED COILED COIL TETRAMER; DE NOVO DESIGN; HET: IPA; 1.9A {synthetic construct} SCOP: k.17.1.1
PVClopT_7 plu2391 PLT_02430 5A3C 5A3C_A 64.3 3.9 6.4e-05 33.2 >5A3C_A SIR2 FAMILY PROTEIN (E.C.2.4.2.30); TRANSFERASE, ADP-RIBOSYLTRANSFERASE, METALLOPROTEIN, NAD-DEPENDENT, LIPOYLATION; HET: GLY, NAD; 2.03A {STREPTOCOCCUS PYOGENES}
PVClopT_8 plu2392 PLT_02431 2P5Z 2P5Z_X 99.9 3.6e-32 6e-37 244.6 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVClopT_9 plu2393 PLT_02432 2IA7 2IA7_A 99.7 1.3e-20 2.2e-25 124.9 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVClopT_10 plu2394 PLT_02433 4JIV 4JIV_D 57.1 6.4 0.00011 25.4 >4JIV_D Tail-associated lysozyme (E.C.3.2.1.17), Putative uncharacterized; PAAR-repeat motif, membrane piercing, type; HET: PLM, STE, ELA; 1.903A {Enterobacteria phage T4}
PVClopT_11 plu2395 PLT_02434 3H2T 3H2T_B 96.9 8e-06 1.3e-10 86.4 >3H2T_B Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVClopT_12 plu2396 PLT_02435 2K0B 2K0B_X 64.0 4.0 6.6e-05 34.8 >2K0B_X Sequestosome-1; ubiquitin binding, helical bundle, three; NMR {Homo sapiens} SCOP: a.5.2.1
PVClopT_14 plu2397 PLT_02436 5MDX 5MDX_4 30.5 33.0 0.00053 31.3 >5MDX_4 Photosystem II protein D1 (E.C.1.10.3.9); photosynthesis, photosystem II supercomplex, single; HET: CHL, CLA, HEM, PHO;{Arabidopsis thaliana}
PVClopT_15 plu2398 PLT_02437 5E7P 5E7P_A 99.8 2.9e-23 4.7e-28 205.4 >5E7P_A Cell division control protein Cdc48; AAA ATPase, M. Smegmatic, RecA; HET: GOL, PGE, PG4, ADP; 2.507A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
PVClopT_16 plu2399 PLT_02438 4XHF 4XHF_B 29.6 35.0 0.00057 30.5 >4XHF_B NA(+)-TRANSLOCATING NADH-QUINONE REDUCTASE SUBUNIT C; FMN, OXIDOREDUCTASE, COVALENT FLAVINYLATION; HET: FMN; 1.76A {Shewanella oneidensis}
PVClopT_17 plu2400 PLT_02439 6A7H 6A7H_C 100.0 2e-105 3e-110 787.7 >6A7H_C RTX toxin; protein toxins, virulence, TOXIN; HET: SO4; 2.301A {Vibrio vulnificus CMCP6}
PVClopT_18 plu2401 PLT_02440 1UKF 1UKF_A 99.8 7.2e-24 1.2e-28 177.7 >1UKF_A Avirulence protein AVRPPH3; AvrPphB, AvrPph3, Avirulence, Hypersensitive Response; 1.35A {Pseudomonas syringae pv. phaseolicola} SCOP: d.3.1.10
PVCunit1_1 plu1730 PLT_01758 5IV5 5IV5_B 99.4 2e-16 3.3e-21 108.5 >5IV5_BB Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCunit1_2 plu1729 PLT_01757 3J9Q 3J9Q_X 100.0 2.9e-34 4.8e-39 243.7 >3J9Q_X sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit1_3 plu1728 PLT_01756 3J9Q 3J9Q_X 100.0 1.9e-33 3.2e-38 246.4 >3J9Q_X sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit1_4 plu1727 PLT_01755 3J9Q 3J9Q_X 99.9 7.3e-30 1.2e-34 219.6 >3J9Q_X sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit1_5 plu1726 PLT_01754 5IV5 5IV5_F 99.1 7.9e-14 1.3e-18 96.0 >5IV5_FH Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCunit1_6 plu1725 PLT_01753 1USD 1USD_A 46.6 12 0.0002 21.4 >1USD_A VASODILATOR-STIMULATED PHOSPHOPROTEIN; SIGNALING PROTEIN, PHOSPHORYLATION, ACTIN-BINDING, KINASE; 1.7A {HOMO SAPIENS} SCOP: h.1.29.1
PVCunit1_7 plu1724 PLT_01752 5A3A 5A3A_A 43.3 15 0.00024 30.0 >5A3A_A SIR2 FAMILY PROTEIN (E.C.2.4.2.30); TRANSFERASE, P-RIBOSYLTRANSFERASE, METALLOPROTEIN, NAD-DEPENDENT, LIPOYLATION; HET: EDO, GLY; 1.54A {STREPTOCOCCUS PYOGENES}
PVCunit1_8 plu1723 PLT_01751 2P5Z 2P5Z_X 99.9 1.2e-30 2e-35 234.8 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVCunit1_9 plu1722 PLT_01750 5IV5 5IV5_T 99.3 3.1e-15 5.1e-20 106.8 >5IV5_T Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCunit1_10 plu1721 PLT_01749 1I24 1I24_A 40.8 17 0.00028 27.5 >1I24_A SULFOLIPID BIOSYNTHESIS PROTEIN SQD1, NICOTINAMIDE-ADENINE-DINUCLEOTIDE; SDR, SHORT-CHAIN DEHYDROGENASE/REDUCTASE, ROSSMANN FOLD; HET: NAD, UPG, SO4; 1.2A {Arabidopsis thaliana} SCOP: c.2.1.2
PVCunit1_11 plu1720 PLT_01748 3H2T 3H2T_B 95.3 0.0012 2e-08 67.6 >3H2T_B Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVCunit1_12 plu1719 PLT_01747 1PQX 1PQX_A 56.2 6.8 0.00011 34.4 >1PQX_A conserved hypothetical protein; ZR18,NMR structure, AUTOSTRUCTURE,SPINS,AUTOASSIGN, Northeast Structural; NMR {Staphylococcus aureus subsp. aureus Mu50} SCOP: d.267.1.1
PVCunit1_13 plu1718 PLT_01746 2FKK 2FKK_A 97.3 1.4e-06 2.4e-11 76.8 >2FKK_A Baseplate structural protein Gp10; Bacteriophage T4 Baseplate ; HET: EDO; 1.2A {Enterobacteria phage T4}
PVCunit1_14 plu1717 PLT_01745 2LXT 2LXT_C 12.6 140.0 0.0023 22.7 >2LXT_C CREB-binding protein (E.C.2.3.1.48), Histone-lysine N-methyltransferase; CREB binding protein, mixed-lineage leukemia; NMR {Homo sapiens}
PVCunit1_15 plu1716 PLT_01744 6FVU 6FVU_H 99.7 1.6e-22 2.7e-27 196.4 >6FVU_H Proteasome subunit alpha type-1 (E.C.3.4.25.1); 26S proteasome, AAA+ ATPase, hydrolase; HET: ADP, ATP; 4.5A {Saccharomyces cerevisiae (strain ATCC 204508 / S288c)}
PVCunit1_16 plu1715 PLT_01743 3GGM 3GGM_A 48.7 11 0.00018 24.9 >3GGM_A uncharacterized protein BT9727_2919; Bacillus cereus group., Structural Genomics; 2.0A {Bacillus thuringiensis serovar konkukian}
PVCunit1_17 plu1714 PLT_01742 1EB6 1EB6_A 83.9 0.47 7.7e-06 31.5 >1EB6_A NEUTRAL PROTEASE II (E.C.3.4.24.39); METALLOPROTEINASE, NEUTRAL PROTEASE II, HYDROLASE; HET: EDO; 1.0A {ASPERGILLUS ORYZAE} SCOP: d.92.1.12
PVCunit1_18 plu1713 PLT_01741 3IM4 3IM4_C 41.0 17.0 0.00028 26.3 >3IM4_C cAMP-dependent protein kinase type I-alpha; four-helix bundle, cAMP, cAMP-binding, Disulfide; 2.285A {Bos taurus}
PVCunit1_19 plu1712 PLT_01740 5XNW 5XNW_A 97.1 3e-06 4.9e-11 80.3 >5XNW_A Adenylate cyclase ExoY; nucleotidyl cyclase, virulence effectors, type; HET: GOL; 2.201A {Pseudomonas aeruginosa}
PVCunit2_1 plu1708 PLT_01736 5IV5 5IV5_I 99.4 3.8e-17 6.2e-22 112.1 >5IV5_IA Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCunit2_2 plu1707 PLT_01735 3J9Q 3J9Q_X 99.9 1e-32 1.7e-37 234.5 >3J9Q_X sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit2_3 plu1706 PLT_01734 3J9Q 3J9Q_B 100.0 1.3e-33 2.1e-38 249.3 >3J9Q_B sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit2_4 plu1705 PLT_01733 3J9Q 3J9Q_B 99.9 3.3e-29 5.4e-34 216.1 >3J9Q_B sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit2_5 plu1704 PLT_01732 5IV5 5IV5_B 98.9 1.1e-12 1.9e-17 90.3 >5IV5_BC Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCunit2_6 plu1703 PLT_01731 4E71 4E71_A 46.2 13 0.00021 23.4 >4E71_A Plexin-B2; plexin, transmembrane, signaling, rbd, Structural; 2.26A {Homo sapiens}
PVCunit2_7 plu1702 PLT_01730 5A3C 5A3C_A 66.3 3.4 5.5e-05 33.6 >5A3C_A SIR2 FAMILY PROTEIN (E.C.2.4.2.30); TRANSFERASE, ADP-RIBOSYLTRANSFERASE, METALLOPROTEIN, NAD-DEPENDENT, LIPOYLATION; HET: GLY, NAD; 2.03A {STREPTOCOCCUS PYOGENES}
PVCunit2_8 plu1701 PLT_01729 2P5Z 2P5Z_X 99.9 5.1e-31 8.3e-36 237.2 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVCunit2_9 plu1700 PLT_01728 2IA7 2IA7_A 99.6 3.7e-19 6.1e-24 120.5 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVCunit2_10 plu1699 PLT_01727 5C2Y 5C2Y_A 34.4 25 0.00042 27.3 >5C2Y_A RNA polymerase II subunit B1; regulator of transcription, zinc finger; HET: SO4; 2.6A {Saccharomyces cerevisiae}
PVCunit2_11 plu1698 PLT_01726 3H2T 3H2T_B 96.2 0.00014 2.3e-09 74.3 >3H2T_B Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVCunit2_12 plu1697 PLT_01725 5YZG 5YZG_Y 36.9 22.0 0.00036 38.4 >5YZG_Y Pre-mRNA-processing-splicing factor 8, 116 kDa; Structure of a Human Catalytic; HET: GTP, I6P, ATP, ADP, SEP; 4.1A {Homo sapiens}
PVCunit2_13 plu1696 PLT_01724 1V1H 1V1H_A 95.2 0.0017 2.7e-08 52.2 >1V1H_A FIBRITIN, FIBER PROTEIN; ADENOVIRUS, CHIMERA, FIBER PROTEIN; 1.9A {HUMAN ADENOVIRUS TYPE 2, BACTERIOPHAGE T4} SCOP: h.1.17.1, b.83.1.1
PVCunit2_14 plu1695 PLT_01723 3K9K 3K9K_A 99.7 2.9e-22 4.7e-27 146.1 >3K9K_A Histone-lysine N-methyltransferase SETMAR (E.C.2.1.1.43); transposase, Chromatin regulator, DNA damage; 2.55A {Homo sapiens}
PVCunit2_99 plu1694 PLT_01722 1GYZ 1GYZ_A 18.2 81.0 0.0013 24.4 >1GYZ_A 50S RIBOSOMAL PROTEIN L20; RIBOSOMAL PROTEIN, RIBOSOME, PROTEIN SYNTHESIS; NMR {AQUIFEX AEOLICUS} SCOP: a.144.2.1
PVCunit2_15 plu1693 PLT_01721 6FVU 6FVU_H 99.8 1.3e-22 2.2e-27 196.8 >6FVU_H Proteasome subunit alpha type-1 (E.C.3.4.25.1); 26S proteasome, AAA+ ATPase, hydrolase; HET: ADP, ATP; 4.5A {Saccharomyces cerevisiae (strain ATCC 204508 / S288c)}
PVCunit2_16 plu1692 PLT_01720 3GGM 3GGM_A 76.6 1.3 2.1e-05 29.3 >3GGM_A uncharacterized protein BT9727_2919; Bacillus cereus group., Structural Genomics; 2.0A {Bacillus thuringiensis serovar konkukian}
PVCunit2_17 plu1691 PLT_01719 2GUT 2GUT_A 48.5 11 0.00018 28.7 >2GUT_A Positive cofactor 2 glutamine/Q-rich-associated protein; KIX, 3 HELICAL BUNDLE, TRANSCRIPTION; NMR {Homo sapiens}
PVCunit2_18 plu1690 PLT_01718 3ONQ 3ONQ_B 55.9 6.9 0.00011 22.6 >3ONQ_B Regulator of polyketide synthase expression; Structural Genomics, PSI-2, Protein Structure; HET: SO4, GOL; 2.098A {Bifidobacterium adolescentis}
PVCunit2_19 plu1689 PLT_01717 5MBV 5MBV_A 36.3 23 0.00037 30.0 >5MBV_A RecBCD enzyme subunit RecB (E.C.3.1.11.5); Inhibitor, Complex, DNA repair, Helicase/Nuclease;{Escherichia coli}
PVCunit3_1 plu1689 PLT_01716 5IV5 5IV5_B 99.4 3.2e-16 5.2e-21 107.5 >5IV5_BC Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCunit3_2 plu1688 PLT_01715 3J9Q 3J9Q_X 100.0 1.9e-33 3.2e-38 239.2 >3J9Q_X sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit3_3 plu1687 PLT_01714 3J9Q 3J9Q_B 100.0 2.2e-33 3.6e-38 245.9 >3J9Q_B sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit3_4 plu1686 PLT_01713 3J9Q 3J9Q_B 99.9 1.1e-29 1.8e-34 218.4 >3J9Q_B sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit3_5 plu1685 PLT_01712 5IV5 5IV5_D 98.8 3.2e-12 5.3e-17 88.0 >5IV5_DF Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCunit3_6 plu1684 PLT_01711 2E3P 2E3P_A 77.2 1.2 2e-05 26.9 >2E3P_A Lipid-transfer protein CERT; LIPID TRANSFER PROTEIN, CERT, CERAMIDE; HET: 16C; 1.4A {Homo sapiens}
PVCunit3_7 plu1683 PLT_01710 1FLT 1FLT_X 32.8 28 0.00046 23.6 >1FLT_X VASCULAR ENDOTHELIAL GROWTH FACTOR, FMS-LIKE; COMPLEX (GROWTH FACTOR-TRANSFERASE), FLT-1 RECEPTOR; 1.7A {Homo sapiens} SCOP: b.1.1.4
PVCunit3_8 plu1682 PLT_01709 2P5Z 2P5Z_X 99.9 8.3e-32 1.4e-36 242.2 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVCunit3_9 plu1681 PLT_01708 2IA7 2IA7_A 99.5 1.4e-18 2.3e-23 116.2 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVCunit3_10 plu1680 PLT_01707 4IX9 4IX9_C 39.7 18 0.0003 24.8 >4IX9_C V-type proton ATPase subunit F; V-ATPase, stalk subunit, subunit F; HET: GOL, TRS; 2.33A {Saccharomyces cerevisiae}
PVCunit3_11 plu1679 PLT_01706 3H2T 3H2T_B 95.8 0.00043 7e-09 70.9 >3H2T_B Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVCunit3_12 plu1678 PLT_01705 3TPZ 3TPZ_B 27.1 41 0.00067 31.0 >3TPZ_B Ribosomal RNA small subunit methyltransferase; rRNA adenine dimethyltransferase, ribogenesis, TRANSFERASE; 2.1A {Escherichia coli}
PVCunit3_13 plu1677 PLT_01704 2FKK 2FKK_A 96.7 2.7e-05 4.4e-10 67.0 >2FKK_A Baseplate structural protein Gp10; Bacteriophage T4 Baseplate ; HET: EDO; 1.2A {Enterobacteria phage T4}
PVCunit3_14 plu1676 PLT_01703 5US5 5US5_B 18.3 80.0 0.0013 27.8 >5US5_B UPF0297 protein EF_1202; IreB, dimer, Structural Genomics, PSI-2; NMR {Enterococcus faecalis (strain ATCC 700802 / V583)}
PVCunit3_15 plu1675 PLT_01702 5E7P 5E7P_B 99.8 1e-22 1.7e-27 201.5 >5E7P_B Cell division control protein Cdc48; AAA ATPase, M. Smegmatic, RecA; HET: GOL, PGE, PG4, ADP; 2.507A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
PVCunit3_16 plu1674 PLT_01701 2OP8 2OP8_A 49.4 10 0.00017 22.5 >2OP8_A Probable tautomerase ywhB (E.C.5.3.2.-); 4-OT, tautomerase, ISOMERASE; 2.5A {Bacillus subtilis}
PVCunit3_17 plu1673 PLT_01700 5XXB 5XXB_e 50.5 9.7 0.00016 26.4 >5XXB_e uL2, uL3, uL4, uL18, eL6; parasitic ribosome, rRNA, rproteins, RIBOSOME; 3.17A {Toxoplasma gondii}
PVCunit3_18 plu1672 PLT_01699 4Q2G 4Q2G_B 27.6 39.0 0.00065 30.4 >4Q2G_B Phosphatidate cytidylyltransferase (E.C.2.7.7.41); intramembrane enzyme, CdsA fold, phospholipid; HET: BNG; 3.4A {Thermotoga maritima MSB8}
PVCunit3_19 plu1671 PLT_01698 2W8M 2W8M_B 24.2 50.0 0.00082 31.1 >2W8M_B ORF D212; SSV1, CRENARCHAEAL VIRUS, HYDROLASE; 2.4A {SULFOLOBUS VIRUS RAGGED HILLS}
PVCunit4_1 plu1667 PLT_01696 5IV5 5IV5_B 99.4 3e-17 5e-22 112.6 >5IV5_BB Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCunit4_2 plu1666 PLT_01695 3J9Q 3J9Q_X 99.9 4.1e-33 6.8e-38 237.2 >3J9Q_X sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit4_3 plu1665 PLT_01694 3J9Q 3J9Q_X 100.0 1.6e-34 2.7e-39 254.0 >3J9Q_X sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit4_4 plu1664 PLT_01693 3J9Q 3J9Q_B 99.9 2.1e-29 3.5e-34 217.9 >3J9Q_B sheath, tube; pyocin, bacteriocin, sheath, tube, STRUCTURAL; 3.5A {Pseudomonas aeruginosa}
PVCunit4_5 plu1663 PLT_01692 5IV5 5IV5_R 98.9 6e-13 9.9e-18 91.6 >5IV5_R Baseplate wedge protein gp6, Baseplate; T4, baseplate-tail tube complex, pre-attachment; 4.11A {Enterobacteria phage T4}
PVCunit4_6 plu1662 PLT_01691 1CZ0 1CZ0_A 61.8 4.7 7.7e-05 26.8 >1CZ0_A INTRON-ENCODED HOMING ENDONUCLEASE I-PPOI (E.C.3.1.-.-)/DNA; PROTEIN-DNA COMPLEX, DISTORTED DNA, HIS-CYS; 2.1A {Physarum polycephalum} SCOP: d.4.1.3
PVCunit4_7 plu1661 PLT_01690 5A3C 5A3C_A 63.6 4.1 6.8e-05 33.1 >5A3C_A SIR2 FAMILY PROTEIN (E.C.2.4.2.30); TRANSFERASE, ADP-RIBOSYLTRANSFERASE, METALLOPROTEIN, NAD-DEPENDENT, LIPOYLATION; HET: GLY, NAD; 2.03A {STREPTOCOCCUS PYOGENES}
PVCunit4_8 plu1660 PLT_01689 2P5Z 2P5Z_X 99.9 1.4e-32 2.4e-37 247.1 >2P5Z_X Type VI secretion system component; structural genomics, UNKNOWN FUNCTION, PSI-2; 2.6A {Escherichia coli O6} SCOP: b.106.1.1, b.40.8.1
PVCunit4_9 plu1659 PLT_01688 2IA7 2IA7_A 99.6 5e-19 8.2e-24 119.9 >2IA7_A Crystal structure of putative tail; NP_952040.1, putative tail lysozyme, Structural; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVCunit4_10 plu1658 PLT_01687 5C2Y 5C2Y_B 32.0 30 0.00049 26.9 >5C2Y_B RNA polymerase II subunit B1; regulator of transcription, zinc finger; HET: SO4; 2.6A {Saccharomyces cerevisiae}
PVCunit4_11 plu1657 PLT_01686 3H2T 3H2T_B 96.0 0.00028 4.6e-09 72.2 >3H2T_B Baseplate structural protein Gp6; viral protein, Virion; 3.2A {Enterobacteria phage T4}
PVCunit4_12 plu1656 PLT_01685 4H3H 4H3H_E 28.9 36.0 0.00059 36.0 >4H3H_E Symplekin, RNA polymerase II subunit; Heat repeat, phosphatase, RNA polymerase; 2.2A {Homo sapiens}
PVCunit4_13 plu1655 PLT_01684 2FKK 2FKK_A 97.1 3e-06 4.9e-11 74.3 >2FKK_A Baseplate structural protein Gp10; Bacteriophage T4 Baseplate ; HET: EDO; 1.2A {Enterobacteria phage T4}
PVCunit4_14 plu1654 PLT_01683 2BPT 2BPT_B 15.6 100.0 0.0017 24.5 >2BPT_B IMPORTIN BETA-1 SUBUNIT, NUCLEOPORIN NUP1; NUCLEAR TRANSPORT, NUCLEOCYTOPLASMIC TRANSPORT, NUCLEAR; 1.99A {SACCHAROMYCES CEREVISIAE}
PVCunit4_15 plu1653 PLT_01682 6FVU 6FVU_H 99.8 7.4e-23 1.2e-27 198.9 >6FVU_H Proteasome subunit alpha type-1 (E.C.3.4.25.1); 26S proteasome, AAA+ ATPase, hydrolase; HET: ADP, ATP; 4.5A {Saccharomyces cerevisiae (strain ATCC 204508 / S288c)}
PVCunit4_16 plu1652 PLT_01681 3FM2 3FM2_B 41.1 17 0.00028 28.0 >3FM2_B Uncharacterized protein, distantly related to; STRUCTURAL GENOMICS, JOINT CENTER FOR; HET: ACT; 1.8A {Anabaena variabilis ATCC 29413}
PVCunit4_17 plu1651 PLT_01680 6BTM 6BTM_D 62.7 4.4 7.2e-05 31.7 >6BTM_D Cytochrome C, Chain B: Alternative; Electron transport chain, triacylated cysteine; HET: E87, HEC; 3.4A {Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101)}
PVCpnf1 PAU_03353 PAU_03392 3eaa 3eaa_A 62.9 2.7 7.1e-05 29.0 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVCpnf2 PAU_03352 PAU_03391 3j9q 3j9q_A 100.0 2e-34 5.3e-39 243.5 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCpnf3 PAU_03351 PAU_03390 3j9q 3j9q_A 99.9 4e-33 1e-37 241.7 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCpnf4 PAU_03350 PAU_03389 3j9q 3j9q_A 99.8 6.5e-26 1.7e-30 195.0 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCpnf5 PAU_03349 PAU_03388 3eaa 3eaa_A 92.7 0.017 4.4e-07 40.3 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVCpnf6 PAU_03348 PAU_03387 4aaa 4aaa_A 78.2 0.68 1.8e-05 28.3 >4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A* No DOI found.
PVCpnf7 PAU_03347 PAU_03386 2v6x 2v6x_B 36.8 14 0.00036 26.4 >2v6x_B DOA4-independent degradation protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae} 10.1038/nature06171
PVCpnf8 PAU_03346 PAU_03385 4uhv 4uhv_A 99.9 8.2e-29 2.1e-33 236.9 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVCpnf9 PAU_03345 PAU_03384 2ia7 2ia7_A 99.7 1e-21 2.6e-26 130.8 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCpnf10 PAU_03344 PAU_03383 1ukf 1ukf_A 82.0 0.4 1.1e-05 36.7 >1ukf_A Avirulence protein AVRPPH3; AVRPPHB, hypersensitive response, hydrolase; 1.35A {Pseudomonas syringae PV} SCOP: d.3.1.10 10.1073/pnas.2036536100
PVCpnf11 PAU_03343 PAU_03382 3h2t 3h2t_A 97.4 4.4e-07 1.2e-11 89.7 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCpnf12 PAU_03342 PAU_03381 2ex2 2ex2_A 39.3 12.0 0.00031 38.0 >2ex2_A Penicillin-binding protein 4; cephem, penem, D-Ala alanine-carboxypeptidase, D-alanyl-D-alanine-endopeptidase, hydrolase; 1.55A {Escherichia coli} SCOP: e.3.1.3 PDB: 2ex6_A* 2ex8_A* 2ex9_A* 2exa_A* 2exb_A* 10.1021/bi051533t
PVCpnf13 PAU_03341 PAU_03380 3izo 3izo_F 98.1 2.8e-09 7.3e-14 107.6 >3izo_F Fiber; pentameric penton base, trimeri viral protein; 3.60A {Human adenovirus 5} 10.1016/j.jmb.2010.11.043
PVCpnf14 PAU_03340 PAU_03379 3c9p 3c9p_A 32.4 18 0.00047 32.2 >3c9p_A Uncharacterized protein SP1917; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 1.96A {Streptococcus pneumoniae} No DOI found.
PVCpnf15 PAU_03339 PAU_03378 5g4f 5g4f_A 99.9 2.1e-26 5.5e-31 222.3 >5g4f_A VCP-like ATPase; hydrolase, VAT, proteasome, protein dynamics, unfoldase, conformations, AAA ATPase; 7.00A {Thermoplasma acidophilum} PDB: 5g4g_A 1cz4_A 1cz5_A 10.1073/pnas.1603980113
PVCpnf16 PAU_03338 PAU_03377 5jbr 5jbr_A 29.2 22 0.00058 23.9 >5jbr_A Uncharacterized protein BCAV_2135; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 1.65A {Beutenbergia cavernae} No DOI found.
PVCpnf17 PAU_03337 PAU_03376 1yrt 1yrt_A 98.5 9e-11 2.4e-15 108.6 >1yrt_A Bifunctional hemolysin-adenylate cyclase; CYAA, layse, toxin; 2.10A {Bordetella pertussis} PDB: 1yru_A 1zot_A* 2col_A 10.1038/sj.emboj.7600800
PVCpnf18 PAU_03336 PAU_03375 5g4d 5g4d_A 60.4 3.2 8.5e-05 23.4 >5g4d_A CAS2, crispr-associated endoribonuclease CAS2; immune system, cripsr-CAS complex, adaptation; 1.70A {Thermococcus onnurineus} PDB: 4tno_A 2i0x_A 10.1002/pro.2981
PVCpnf19 PAU_03334 PAU_03374 3gqe 3gqe_A 62.7 2.7 7.2e-05 25.6 >3gqe_A Non-structural protein 3; macro domain, X domain, venezuelan equine encephalitis virus alphavirus; HET: BCN; 2.30A {Venezuelan equine encephalitis virus} PDB: 3gqo_A* 10.1128/JVI.00189-09
PVCpnf20 PAU_03333 PAU_03373 3fxq 3fxq_A 99.7 2.4e-21 6.3e-26 122.5 >3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A* 10.1111/j.1365-2958.2010.07043.x
PVCpnf21 PAU_03332 PAU_03372 1hq0 1hq0_A 100.0 1.1e-64 2.8e-69 458.4 >1hq0_A CNF1, cytotoxic necrotizing factor 1; beta sandwich, RHO deamidase, RHO transglutaminase, toxin; 1.83A {Escherichia coli} SCOP: d.194.1.1 PDB: 1hzg_A 10.1038/89610
PVCpnf22 PAU_03331 PAU_03371 2oyz 2oyz_A 62.7 2.8 7.2e-05 24.7 >2oyz_A UPF0345 protein VPA0057; unknown function, structural genomi 2, protein structure initiative, midwest center for structu genomics, MCSG; 1.71A {Vibrio parahaemolyticus} SCOP: b.82.1.22 No DOI found.
PVCpnf23 PAU_03330 PAU_03370 3hdf 3hdf_A 100.0 1.6e-41 4.1e-46 227.5 >3hdf_A Lysozyme; antimicrobial, bacteriolytic enzyme, glycosid hydrolase, late protein; 1.70A {Enterobacteria phage P21} 10.1038/nsmb.1681
PVCpnf24 PAU_03329 PAU_03369 3vp9 3vp9_A 61.6 3 7.8e-05 30.4 >3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A 10.1074/jbc.M112.369652
PVCcif1 PAU_01993 PAU_01961 3jqo 3jqo_B 41.5 10 0.00027 27.0 >3jqo_B TRAO protein; helical outer membrane TM, outer membrane protein complex, T protein; HET: LDA; 2.60A {Escherichia coli} PDB: 3zbi_B 2ofq_A 10.1038/nature08588
PVCcif2 PAU_01994 PAU_01962 3j9q 3j9q_A 99.9 4.5e-33 1.2e-37 236.1 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCcif3 PAU_01995 PAU_01963 3j9q 3j9q_A 99.9 1.3e-30 3.4e-35 228.9 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCcif4 PAU_01996 PAU_01964 3j9q 3j9q_A 99.9 9.7e-27 2.5e-31 199.5 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCcif5 PAU_01997 PAU_01965 4tv4 4tv4_A 57.2 4.0 0.0001 29.5 >4tv4_A Uncharacterized protein; unknown function, ssgcid, virulence, structural genomics; 2.10A {Burkholderia pseudomallei} No DOI found.
PVCcif6 PAU_01998 PAU_01966 3nyi 3nyi_A 42.8 9.7 0.00025 24.7 >3nyi_A FAT acid-binding protein; stearic acid, DEGV family protein, structural genomics, PSI- protein structure initiative; HET: STE; 1.90A {Eubacterium ventriosum} No DOI found.
PVCcif7 PAU_01999 PAU_01967 5a3a 5a3a_A 47.5 7.3 0.00019 30.9 >5a3a_A SIR2 family protein; transferase, P-ribosyltransferase, metalloprotein, NAD-depen lipoylation, regulatory enzyme, rossmann fold; 1.54A {Streptococcus pyogenes} PDB: 5a3b_A* 5a3c_A* 10.1016/j.molcel.2015.06.013
PVCcif8 PAU_02000 PAU_01968 4uhv 4uhv_A 99.9 1e-27 2.6e-32 229.1 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVCcif9 PAU_02001 PAU_01969 2ia7 2ia7_A 99.7 8.1e-22 2.1e-26 132.1 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCcif10 PAU_02002 PAU_01970 3dfz 3dfz_A 35.9 15 0.00038 26.2 >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} 10.1042/BJ20080785
PVCcif11 PAU_02003 PAU_01971 3h2t 3h2t_A 96.4 5.2e-05 1.4e-09 76.8 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCcif12 PAU_02004 PAU_01972 4orl 4orl_A 63.3 2.6 6.9e-05 37.5 >4orl_A Uncharacterized protein; PF16022 family, DUF4783, structural genomics, joint center F structural genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Bacteroides ovatus} No DOI found.
PVCcif13 PAU_02005 PAU_01973 1ocy 1ocy_A 98.4 2.3e-10 6e-15 91.7 >1ocy_A Bacteriophage T4 short tail fibre; structural protein, fibrous protein, LIPO-polysaccharide binding, bacteriophage structural protein; HET: CIT; 1.5A {Bacteriophage T4} SCOP: d.231.1.1 10.1016/S0022-2836(03)00755-1
PVCcif14 PAU_02006 PAU_01974 2d8r 2d8r_A 42.5 9.8 0.00026 29.1 >2d8r_A THAP domain-containing protein 2; NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.16 No DOI found.
PVCcif15 PAU_02007 PAU_01975 5e7p 5e7p_A 99.8 4.8e-26 1.3e-30 230.3 >5e7p_A Cell division control protein CDC48; AAA ATPase, M. smegmatic, RECA, hydrolase; HET: ADP PG4 PGE; 2.51A {Mycobacterium smegmatis} 10.1128/JB.00905-15
PVCcif16 PAU_02008 PAU_01976 4adx 4adx_G 38.8 12 0.00032 27.2 >4adx_G RPLX; ribosome, protein synthesis; 6.60A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2jxt_A 10.1016/j.jmb.2012.01.018
PVCcif17 PAU_02009 PAU_01977 4fbj 4fbj_A 100.0 4.2e-96 1e-100 648.7 >4fbj_A CIF, hypothetical protein; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Photorhabdus luminescens subsp} PDB: 3gqj_A No DOI found.
PVCcif18 PAU_02010 PAU_01978 2b9i 2b9i_C 28.4 24 0.00061 22.2 >2b9i_C MSG5, tyrosine-protein phosphatase MSG5; transferase; HET: ADP; 2.50A {Saccharomyces cerevisiae} 10.1016/j.molcel.2005.10.030
PVCcif19 PAU_02011 PAU_01979 2hxj 2hxj_A 61.1 3.1 8.1e-05 34.1 >2hxj_A Hypothetical protein; APC83807, structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.21A {Neisseria meningitidis MC58} SCOP: a.136.1.1 PDB: 3mw6_A Key error. ID likely deprecated.
PVCcif20 PAU_02012 PAU_01980 3gkn 3gkn_A 37.8 13 0.00034 22.7 >3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A 10.1016/j.jmb.2009.05.030
PVClumT1 PAU_02247 PAU_02206 3eaa 3eaa_A 61.3 3.0 7.9e-05 28.7 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVClumT2 PAU_02246 PAU_02205 3j9q 3j9q_A 99.9 8.1e-31 2.1e-35 228.3 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClumT3 PAU_02245 PAU_02204 3j9q 3j9q_A 99.9 2.8e-28 7.4e-33 208.3 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClumT4 PAU_02244 PAU_02203 3eaa 3eaa_A 52.9 5.3 0.00014 27.7 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVClumT5 PAU_02243 PAU_02202 1use 1use_A 67.8 1.9 4.9e-05 23.9 >1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A 10.1073/pnas.0403069101
PVClumT6 PAU_02242 PAU_02201 4v2x 4v2x_A 32.7 18.0 0.00047 31.3 >4v2x_A Endo-beta-1,4-glucanase (cellulase B); hydrolase, TRI-modular; 1.64A {Bacillus halodurans} 10.1074/jbc.M115.637827
PVClumT7 PAU_02241 PAU_02200 2p5z 2p5z_X 99.7 5.6e-22 1.5e-26 179.9 >2p5z_X Type VI secretion system component; structural genomics, unknown function, PSI-2, protein struct initiative; 2.60A {Escherichia coli O6} SCOP: b.40.8.1 b.106.1.1 b.106.1.1 10.1073/pnas.0813360106
PVClumT8 PAU_02240 PAU_02199 2ia7 2ia7_A 99.7 3.7e-22 9.6e-27 133.8 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVClumT9 afp10 PAU_02198 4jiv 4jiv_D 69.6 1.6 4.2e-05 27.5 >4jiv_D VCA0105, putative uncharacterized protein; PAAR-repeat motif, membrane piercing, type VI secretion SYST vibrio cholerae VGRG2; HET: PLM STE ELA; 1.90A {Vibrio cholerae o1 biovar eltor} 10.1038/nature12453
PVClumT10 afp11 PAU_02197 3h2t 3h2t_A 96.8 9.6e-06 2.5e-10 78.8 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVClumT11 PAU_02237 PAU_02196 1yo5 1yo5_C 39.5 12 0.00031 32.1 >1yo5_C SAM pointed domain containing ETS transcription factor; protein-DNA complex, double helix, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.4.5.21 10.1021/bi047352t
PVClumT12 PAU_02236 PAU_02195 1v1h 1v1h_A 97.7 9.4e-08 2.4e-12 71.3 >1v1h_A Fibritin, fiber protein; chimera; 1.9A {Human adenovirus type 2} SCOP: b.83.1.1 h.1.17.1 PDB: 1v1i_A 10.1016/j.jmb.2004.07.008
PVClumT13 PAU_02235 PAU_02194 1osn 1osn_A 41.0 11 0.00028 36.0 >1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1 10.1074/jbc.M302025200
PVClumT14 PAU_02234 PAU_02193 4uid 4uid_A 63.3 2.6 6.9e-05 31.3 >4uid_A S-layer SBSC, surface layer protein; sugar binding protein, G. stearothermophilus; 2.80A {Geobacillus stearothermophilus} No DOI found.
PVClumT15 PAU_02233 PAU_02192 1tdp 1tdp_A 22.1 37.0 0.00096 27.2 >1tdp_A Carnobacteriocin B2 immunity protein; four-helix bundle, antimicrobial protein; NMR {Carnobacterium maltaromaticum} SCOP: a.29.8.1 10.1021/bi048854+
PVClumT16 PAU_02232 PAU_02191 5ftj 5ftj_A 99.8 2.9e-25 7.6e-30 220.3 >5ftj_A Transitional endoplasmic reticulum ATPase; hydrolase, single-particle, AAA ATPase; HET: ADP OJA; 2.30A {Homo sapiens} PDB: 3cf1_A* 3cf3_A* 3cf2_A* 5ftk_A* 5ftl_A* 5ftm_A* 5ftn_A* 1r7r_A* 5c19_A 5c1b_A* 5c18_A* 3cf0_A* 10.1126/science.aad7974
PVClumT17 PAU_02231 PAU_02190 3lfh 3lfh_A 39.7 12 0.0003 28.9 >3lfh_A Manxa, phosphotransferase system, mannose/fructose-speci component IIA; PTS; 1.80A {Thermoanaerobacter tengcongensis} No DOI found.
PVClumT18 PAU_02230 PAU_02189 4mix 4mix_A 100.0 6e-57 1.6e-61 486.1 >4mix_A Putative insecticidal toxin; tyrosine glycosylation, UDP-GLCNAC, nucleotide-binding domai rossmann-like, glycosyltransferase; HET: MSE UD1; 1.80A {Photorhabdus asymbiotica subsp} 10.1038/nsmb.2688
PVClopT1 PAU_02112 PAU_02074 3eaa 3eaa_A 83.5 0.32 8.3e-06 33.5 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVClopT2 PAU_02111 PAU_02073 3j9q 3j9q_A 100.0 2.8e-35 7.3e-40 248.2 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClopT3 PAU_02110 PAU_02072 3j9q 3j9q_A 99.9 3.9e-31 1e-35 226.1 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClopT4 PAU_02109 PAU_02071 4tv4 4tv4_A 70.8 1.5 3.8e-05 31.8 >4tv4_A Uncharacterized protein; unknown function, ssgcid, virulence, structural genomics; 2.10A {Burkholderia pseudomallei} No DOI found.
PVClopT5 PAU_02108 PAU_02070 4hf1 4hf1_A 81.1 0.47 1.2e-05 28.7 >4hf1_A HTH-type transcriptional regulator ISCR; WHTH, protein-DNA complex, iron-sulfur cluster, winged helix helix, transcriptional regulator, redox sensor; HET: DNA; 2.22A {Escherichia coli} PDB: 4hf2_A* 4chu_A 10.1038/nsmb.2568
PVClopT6 PAU_02107 PAU_02069 2vol 2vol_A 28.5 23 0.00061 22.9 >2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A Key error. ID likely deprecated.
PVClopT7 PAU_02106 PAU_02068 4uhv 4uhv_A 99.9 8.6e-30 2.2e-34 243.3 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVClopT8 PAU_02105 PAU_02067 2ia7 2ia7_A 99.8 2.3e-23 6e-28 138.6 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVClopT9 PAU_02104 PAU_02066 3ojo 3ojo_A 31.3 19 0.00051 28.0 >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* 10.1074/jbc.M110.216002
PVClopT10 PAU_02103 PAU_02065 3h2t 3h2t_A 97.1 2.3e-06 6.1e-11 89.7 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVClopT11 PAU_02102 PAU_02064 1pqx 1pqx_A 37.4 13 0.00035 31.4 >1pqx_A Conserved hypothetical protein; ZR18,structure, autostructure,spins,autoassign, northeast structural genomics consortium; NMR {Staphylococcus aureus subsp} SCOP: d.267.1.1 PDB: 2ffm_A 2m6q_A 2m8w_A No DOI found.
PVClopT12 PAU_02101 PAU_02063 4yap 4yap_A 31.1 20 0.00052 29.1 >4yap_A Glutathione S-transferase homolog; GSH-lyase GSH-dependent; 1.11A {Sphingobium SP} PDB: 4g10_A 4yav_A* 10.1074/jbc.M115.700427
PVClopT13 PAU_02100 PAU_02062 5e7p 5e7p_A 99.9 2e-26 5.3e-31 232.9 >5e7p_A Cell division control protein CDC48; AAA ATPase, M. smegmatic, RECA, hydrolase; HET: ADP PG4 PGE; 2.51A {Mycobacterium smegmatis} 10.1128/JB.00905-15
PVClopT14 PAU_02099 PAU_02061 3rbt 3rbt_A 19.3 46.0 0.0012 25.1 >3rbt_A Glutathione transferase O1; glutathione S-transferase omega3; 2.20A {Bombyx mori} 10.1016/j.jmb.2011.07.019
PVClopT15 PAU_02098 PAU_02060 2ebf 2ebf_X 100.0 5.6e-90 1.5e-94 707.6 >2ebf_X Dermonecrotic toxin; pasteurella multocida toxin, trojan horse-like fold; HET: TRE; 1.90A {Pasteurella multocida} SCOP: a.296.1.1 c.150.1.2 d.3.1.17 PDB: 2ec5_A 2ebh_X* 10.1073/pnas.0608197104
PVClopT16 PAU_02097 PAU_02059 2jsp 2jsp_A 15.3 66.0 0.0017 24.7 >2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens} 10.1073/pnas.0706659104
PVClopT17 PAU_02096 PAU_02058 1ukf 1ukf_A 99.9 1.4e-26 3.8e-31 195.3 >1ukf_A Avirulence protein AVRPPH3; AVRPPHB, hypersensitive response, hydrolase; 1.35A {Pseudomonas syringae PV} SCOP: d.3.1.10 10.1073/pnas.2036536100
PVClopT18 PAU_02095 PAU_02057 4igl 4igl_B 100.0 8.8e-59 2.3e-63 451.0 >4igl_B YENC2; beta-propeller, RHS, toxin complex, toxin transporter/chaper secreted, toxin; 2.49A {Yersinia} 10.1038/nature12465
PVCunit1_1 afp1 PAU_02775 3eaa 3eaa_A 73.0 1.2 3.1e-05 30.8 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVCunit1_2 afp2 PAU_02776 3j9q 3j9q_A 100.0 3.7e-36 9.7e-41 254.4 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit1_3 afp3 PAU_02777 3j9q 3j9q_A 100.0 2.6e-35 6.9e-40 257.2 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit1_4 afp4 PAU_02778 3j9q 3j9q_A 99.9 3.6e-29 9.5e-34 214.6 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit1_5 afp5 PAU_02779 4tv4 4tv4_A 63.6 2.6 6.7e-05 30.5 >4tv4_A Uncharacterized protein; unknown function, ssgcid, virulence, structural genomics; 2.10A {Burkholderia pseudomallei} No DOI found.
PVCunit1_6 afp7 PAU_02780 4e71 4e71_A 48.8 6.8 0.00018 24.0 >4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens} No DOI found.
PVCunit1_7 afp7 PAU_02781 5a3a 5a3a_A 45.8 8.1 0.00021 30.6 >5a3a_A SIR2 family protein; transferase, P-ribosyltransferase, metalloprotein, NAD-depen lipoylation, regulatory enzyme, rossmann fold; 1.54A {Streptococcus pyogenes} PDB: 5a3b_A* 5a3c_A* 10.1016/j.molcel.2015.06.013
PVCunit1_8 PAU_02796 PAU_02782 4uhv 4uhv_A 99.9 1.4e-30 3.7e-35 248.7 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVCunit1_9 afp9 PAU_02783 2ia7 2ia7_A 99.7 5.4e-22 1.4e-26 133.1 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCunit1_10 afp10 PAU_02784 1pml 1pml_A 37.7 13 0.00034 21.4 >1pml_A Tissue plasminogen activator kringle 2; hydrolase(serine protease); 2.38A {Homo sapiens} SCOP: g.14.1.1 PDB: 1pk2_A* 1tpk_A 10.1002/pro.5560030605
PVCunit1_11 afp11 PAU_02785 3h2t 3h2t_A 96.7 1.5e-05 3.9e-10 80.6 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCunit1_12 afp12 PAU_02786 1pqx 1pqx_A 18.2 51.0 0.0013 28.2 >1pqx_A Conserved hypothetical protein; ZR18,structure, autostructure,spins,autoassign, northeast structural genomics consortium; NMR {Staphylococcus aureus subsp} SCOP: d.267.1.1 PDB: 2ffm_A 2m6q_A 2m8w_A No DOI found.
PVCunit1_13 PAU_02801 PAU_02787 1ocy 1ocy_A 98.3 6.7e-10 1.8e-14 92.9 >1ocy_A Bacteriophage T4 short tail fibre; structural protein, fibrous protein, LIPO-polysaccharide binding, bacteriophage structural protein; HET: CIT; 1.5A {Bacteriophage T4} SCOP: d.231.1.1 10.1016/S0022-2836(03)00755-1
PVCunit1_14 orf25 PAU_02788 3dzd 3dzd_A 24.8 30 0.00078 28.5 >3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A 10.1016/j.jmb.2008.10.024
PVCunit1_15 PAU_02803 PAU_02789 5e7p 5e7p_A 99.9 4.9e-28 1.3e-32 244.9 >5e7p_A Cell division control protein CDC48; AAA ATPase, M. smegmatic, RECA, hydrolase; HET: ADP PG4 PGE; 2.51A {Mycobacterium smegmatis} 10.1128/JB.00905-15
PVCunit1_16 PAU_02804 PAU_02790 4uhq 4uhq_A 35.4 15 0.00039 29.3 >4uhq_A Large component of pyocin AP41; hydrolase, bacteriocin, DNAse; HET: CIT; 1.50A {Pseudomonas aeruginosa} PDB: 4uhp_A* 10.1016/j.jmb.2015.07.014
PVCunit1_17 hrpN PAU_02791 1yqf 1yqf_A 60.7 3.2 8.3e-05 33.9 >1yqf_A Hypothetical protein LMAJ011689; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.30A {Leishmania major} SCOP: d.25.1.1 No DOI found.
PVCunit1_18 PAU_02806 PAU_02792 1t6u 1t6u_A 24.5 31 0.0008 28.1 >1t6u_A Superoxide dismutase [NI]; nickel, 4-helix bundle, hexamer, nisod, SOD, high resolution, oxidoreductase; 1.30A {Streptomyces coelicolor} SCOP: a.24.22.1 PDB: 1t6q_A 1t6i_A 3g4z_A 3g4x_A 4ncq_A 3g50_A 1q0g_A 1q0f_A 1q0d_A 1q0k_A 1q0m_A 10.1021/bi0496081
PVCunit1_19 PAU_02807 PAU_02793 3kx6 3kx6_A 19.7 45 0.0012 31.3 >3kx6_A Fructose-bisphosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, glycolysis, lyase, STRU genomics; HET: CIT; 2.10A {Babesia bovis} No DOI found.
PVCunit1_20 PAU_02808 PAU_02794 1vyy 1vyy_A 99.9 8.9e-33 2.3e-37 218.9 >1vyy_A Lectin; sugar-binding protein, D-mannose, plant pathogen; HET: BMA MAN; 1.00A {Ralstonia solanacearum} PDB: 1uqx_A* 2chh_A* Key error. ID likely deprecated.
PVCpnf1 PAK_3544 PAK_03203 3eaa 3eaa_A 78.5 0.66 1.7e-05 32.1 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVCpnf2 PAK_3543 PAK_03202 3j9q 3j9q_A 100.0 3e-34 7.9e-39 242.5 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCpnf3 PAK_3542 PAK_03201 3j9q 3j9q_A 99.9 8.7e-33 2.3e-37 239.9 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCpnf4 PAK_3541 PAK_03200 3j9q 3j9q_A 99.9 7.1e-27 1.8e-31 200.5 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCpnf5 PAK_3540 PAK_03199 3eaa 3eaa_A 92.6 0.018 4.7e-07 40.1 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVCpnf6 PAK_3539 PAK_03198 4aaa 4aaa_A 78.2 0.68 1.8e-05 28.3 >4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A* No DOI found.
PVCpnf7 PAK_3538 PAK_03197 1pp0 1pp0_A 18.8 48.0 0.0013 26.7 >1pp0_A Volvatoxin A2; ingot crystal form; 1.42A {Volvariella volvacea} SCOP: d.103.1.1 PDB: 1pp6_A 1vgf_A 1vcy_A 10.1016/j.jmb.2004.08.045
PVCpnf8 PAK_3537 PAK_03196 4uhv 4uhv_A 99.9 9.9e-29 2.6e-33 236.3 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVCpnf9 PAK_3536 PAK_03195 2ia7 2ia7_A 99.7 1.5e-21 3.9e-26 129.9 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCpnf10 PAK_3535 PAK_03194 1ukf 1ukf_A 77.5 0.75 1.9e-05 35.1 >1ukf_A Avirulence protein AVRPPH3; AVRPPHB, hypersensitive response, hydrolase; 1.35A {Pseudomonas syringae PV} SCOP: d.3.1.10 10.1073/pnas.2036536100
PVCpnf11 PAK_3534 PAK_03193 3h2t 3h2t_A 96.8 8.4e-06 2.2e-10 80.7 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCpnf12 PAK_3533 PAK_03192 2jpf 2jpf_A 32.7 18.0 0.00046 34.1 >2jpf_A Hypothetical protein; all alpha helical protein, type III secretion effector protein, structural genomics; NMR {Bordetella parapertussis} No DOI found.
PVCpnf13 PAK_3532 PAK_03191 2xgf 2xgf_A 97.8 4e-08 1.1e-12 86.2 >2xgf_A Long tail fiber protein P37; viral protein; 2.20A {Enterobacteria phage T4} 10.1073/pnas.1011218107
PVCpnf14 PAK_3531 PAK_03190 3fx7 3fx7_A 45.3 8.3 0.00022 28.7 >3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} PDB: 2gts_A 10.1093/jb/mvp098
PVCpnf15 PAK_3530 PAK_03189 5g4f 5g4f_A 99.9 7e-27 1.8e-31 225.6 >5g4f_A VCP-like ATPase; hydrolase, VAT, proteasome, protein dynamics, unfoldase, conformations, AAA ATPase; 7.00A {Thermoplasma acidophilum} PDB: 5g4g_A 1cz4_A 1cz5_A 10.1073/pnas.1603980113
PVCpnf16 PAK_3529 PAK_03188 3t5s 3t5s_A 61.4 3 7.9e-05 30.2 >3t5s_A Gilaa.00834.A, macrophage migration inhibitory factor; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Giardia lamblia} 10.1007/s10969-013-9155-9
PVCpnf17 PAK_3527 PAK_03187 4ae8 4ae8_A 59.8 3.4 8.8e-05 27.4 >4ae8_A Thioesterase superfamily member 4; hydrolase, hotdog-fold; 1.59A {Homo sapiens} PDB: 4gah_A* 10.1128/MCB.00312-12
PVCpnf18 PAK_3526 PAK_03186 3fxq 3fxq_A 99.7 2.7e-21 7e-26 122.2 >3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A* 10.1111/j.1365-2958.2010.07043.x
PVCpnf19 PAK_3525 PAK_03185 4mix 4mix_A 100.0 5e-35 1.3e-39 251.4 >4mix_A Putative insecticidal toxin; tyrosine glycosylation, UDP-GLCNAC, nucleotide-binding domai rossmann-like, glycosyltransferase; HET: MSE UD1; 1.80A {Photorhabdus asymbiotica subsp} 10.1038/nsmb.2688
PVCpnf20 PAK_3524 PAK_03184 1xju 1xju_A 99.4 4.1e-17 1.1e-21 98.8 >1xju_A Lysozyme; secreted inactive conformation, hydrolase; 1.07A {Enterobacteria phage P1} SCOP: d.2.1.3 10.1126/science.1105143
PVCpnf21 PAK_3523 PAK_03183 3hdf 3hdf_A 99.7 1.5e-22 3.8e-27 125.9 >3hdf_A Lysozyme; antimicrobial, bacteriolytic enzyme, glycosid hydrolase, late protein; 1.70A {Enterobacteria phage P21} 10.1038/nsmb.1681
PVCpnf22 PAK_3522 PAK_03182 1l8d 1l8d_A 69.1 1.7 4.4e-05 28.9 >1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1 10.1038/nature00922
PVCpnf23 PAK_3521 PAK_03181 3hdf 3hdf_A 100.0 1.8e-42 4.7e-47 232.0 >3hdf_A Lysozyme; antimicrobial, bacteriolytic enzyme, glycosid hydrolase, late protein; 1.70A {Enterobacteria phage P21} 10.1038/nsmb.1681
PVCcif1 PAK_1969 PAK_01787 3jqo 3jqo_B 40.9 11 0.00028 26.9 >3jqo_B TRAO protein; helical outer membrane TM, outer membrane protein complex, T protein; HET: LDA; 2.60A {Escherichia coli} PDB: 3zbi_B 2ofq_A 10.1038/nature08588
PVCcif2 PAK_1970 PAK_01788 3j9q 3j9q_A 100.0 3.7e-34 9.7e-39 242.8 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCcif3 PAK_1971 PAK_01789 3j9q 3j9q_A 99.9 1.8e-31 4.8e-36 234.4 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCcif4 PAK_1972 PAK_01790 3j9q 3j9q_A 99.9 3.9e-27 1e-31 202.0 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCcif5 PAK_1973 PAK_01791 4tv4 4tv4_A 40.1 11 0.0003 27.1 >4tv4_A Uncharacterized protein; unknown function, ssgcid, virulence, structural genomics; 2.10A {Burkholderia pseudomallei} No DOI found.
PVCcif6 PAK_1974 PAK_01792 3rjr 3rjr_A 53.8 5 0.00013 26.1 >3rjr_A Transforming growth factor beta-1; TGF beta, activation, integrin, cytokine; HET: NAG; 3.05A {Sus scrofa} 10.1038/nature10152
PVCcif7 PAK_1975 PAK_01793 5a3a 5a3a_A 50.8 6 0.00016 31.4 >5a3a_A SIR2 family protein; transferase, P-ribosyltransferase, metalloprotein, NAD-depen lipoylation, regulatory enzyme, rossmann fold; 1.54A {Streptococcus pyogenes} PDB: 5a3b_A* 5a3c_A* 10.1016/j.molcel.2015.06.013
PVCcif8 PAK_1976 PAK_01794 4uhv 4uhv_A 99.9 4.6e-28 1.2e-32 231.4 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVCcif9 PAK_1977 PAK_01795 2ia7 2ia7_A 99.7 9.7e-22 2.5e-26 131.7 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCcif10 PAK_1978 PAK_01796 2k4r 2k4r_A 37.5 13 0.00035 21.5 >2k4r_A Neurotrypsin; kringle domain, disulfide-rich protein fold, serine endopeptidase, hydrolase, extracellular proteolysis; NMR {Rattus norvegicus} PDB: 2k51_A 10.1021/bi800555z
PVCcif11 PAK_1979 PAK_01797 3h2t 3h2t_A 96.1 0.00012 3.2e-09 74.0 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCcif12 PAK_1980 PAK_01798 5efx 5efx_A 68.5 1.8 4.6e-05 36.3 >5efx_A RHO guanine nucleotide exchange factor 2; RHO GTPase, activity, signaling protein; 2.45A {Homo sapiens} 10.1016/j.bbrc.2016.01.150
PVCcif13 PAK_1981 PAK_01799 1ocy 1ocy_A 98.3 5.2e-10 1.4e-14 89.6 >1ocy_A Bacteriophage T4 short tail fibre; structural protein, fibrous protein, LIPO-polysaccharide binding, bacteriophage structural protein; HET: CIT; 1.5A {Bacteriophage T4} SCOP: d.231.1.1 10.1016/S0022-2836(03)00755-1
PVCcif14 PAK_1982 PAK_01800 1tuz 1tuz_A 21.4 39.0 0.001 26.1 >1tuz_A Diacylglycerol kinase alpha; transferase, HR532, nesgc, structural genomics, PSI, protein structure initiative; NMR {Homo sapiens} SCOP: a.39.1.7 No DOI found.
PVCcif15 PAK_1983 PAK_01801 5e7p 5e7p_A 99.8 5.5e-25 1.4e-29 222.7 >5e7p_A Cell division control protein CDC48; AAA ATPase, M. smegmatic, RECA, hydrolase; HET: ADP PG4 PGE; 2.51A {Mycobacterium smegmatis} 10.1128/JB.00905-15
PVCcif16 PAK_1984 PAK_01802 3fxd 3fxd_B 34.1 16 0.00043 28.1 >3fxd_B Protein ICMR; helix bundle, helix-turn-helix, unknown function; 2.10A {Legionella pneumophila subsp} PDB: 3fxe_B 10.1016/j.str.2009.02.011
PVCcif17 PAK_1985 PAK_01803 4fbj 4fbj_A 100.0 2.4e-91 6.3e-96 618.6 >4fbj_A CIF, hypothetical protein; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Photorhabdus luminescens subsp} PDB: 3gqj_A No DOI found.
PVCcif18 PAK_1986 PAK_01804 3r2n 3r2n_A 31.0 20 0.00052 26.9 >3r2n_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.30A {Mycobacterium leprae} 10.1016/j.tube.2014.12.003
PVCcif19 PAK_1987 PAK_01805 5ewy 5ewy_A 97.3 6.2e-07 1.6e-11 74.4 >5ewy_A Putative ADP-ribosyltransferase scabin; inhibitor, transferase-transferase inhibitor CO; HET: 5TQ; 1.40A {Streptomyces scabiei 87} PDB: 5ewk_A* 10.1074/jbc.M115.707653
PVCcif20 PAK_1988 PAK_01806 2hxj 2hxj_A 74.1 1.1 2.8e-05 35.9 >2hxj_A Hypothetical protein; APC83807, structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.21A {Neisseria meningitidis MC58} SCOP: a.136.1.1 PDB: 3mw6_A Key error. ID likely deprecated.
PVClumt1 PAK_2216 PAK_02014 3eaa 3eaa_A 69.3 1.7 4.3e-05 30.1 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVClumt2 PAK_2215 PAK_02013 3j9q 3j9q_A 99.6 1.4e-19 3.6e-24 154.2 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClumt3 PAK_2214 PAK_02012 3j9q 3j9q_A 98.2 1.5e-09 3.9e-14 75.6 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClumt4 PAK_2213 PAK_02011 3j9q 3j9q_A 99.9 7.2e-29 1.9e-33 212.0 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClumt5 PAK_2212 PAK_02010 3eaa 3eaa_A 72.5 1.2 3.3e-05 30.9 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVClumt6 PAK_2211 PAK_02009 1use 1use_A 68.7 1.7 4.5e-05 24.0 >1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A 10.1073/pnas.0403069101
PVClumt7 PAK_2210 PAK_02008 4v2x 4v2x_A 33.0 17.0 0.00046 31.3 >4v2x_A Endo-beta-1,4-glucanase (cellulase B); hydrolase, TRI-modular; 1.64A {Bacillus halodurans} 10.1074/jbc.M115.637827
PVClumt8 PAK_2209 PAK_02007 2p5z 2p5z_X 99.7 1.5e-21 3.8e-26 177.2 >2p5z_X Type VI secretion system component; structural genomics, unknown function, PSI-2, protein struct initiative; 2.60A {Escherichia coli O6} SCOP: b.40.8.1 b.106.1.1 b.106.1.1 10.1073/pnas.0813360106
PVClumt9 PAK_2208 PAK_02006 2ia7 2ia7_A 99.7 6.7e-22 1.7e-26 132.6 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVClumt10 PAK_2207 PAK_02005 3ull 3ull_A 58.1 3.8 9.8e-05 26.7 >3ull_A DNA binding protein; DNA replication, mitochondrion, transit peptide; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 PDB: 1s3o_A* 2dud_A 10.1038/nsb0297-153
PVClumt11 PAK_2206 PAK_02004 2kcp 2kcp_A 37.9 13 0.00034 29.9 >2kcp_A 30S ribosomal protein S8E; RPS8E, beta, NESG, ribonucleoprotein, structural genomics, PSI-2; NMR {Methanothermobacter thermautotrophicusstr} PDB: 2kcy_A No DOI found.
PVClumt12 PAK_2205 PAK_02003 3h2t 3h2t_A 96.2 8.2e-05 2.1e-09 63.5 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVClumt13 PAK_2204 PAK_02002 1yo5 1yo5_C 39.0 12 0.00032 32.1 >1yo5_C SAM pointed domain containing ETS transcription factor; protein-DNA complex, double helix, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.4.5.21 10.1021/bi047352t
PVClumt14 PAK_2203 PAK_02001 1v1h 1v1h_A 95.3 0.00092 2.4e-08 49.5 >1v1h_A Fibritin, fiber protein; chimera; 1.9A {Human adenovirus type 2} SCOP: b.83.1.1 h.1.17.1 PDB: 1v1i_A 10.1016/j.jmb.2004.07.008
PVClumt15 PAK_2202 PAK_02000 1osn 1osn_A 25.9 28 0.00073 33.2 >1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1 10.1074/jbc.M302025200
PVClumt16 PAK_2201 PAK_01999 4uid 4uid_A 64.8 2.4 6.2e-05 31.5 >4uid_A S-layer SBSC, surface layer protein; sugar binding protein, G. stearothermophilus; 2.80A {Geobacillus stearothermophilus} No DOI found.
PVClumt17 PAK_2200 PAK_01998 3k8p 3k8p_C 34.7 16.0 0.00041 34.1 >3k8p_C DSL1, KLLA0C02695P; intracellular trafficking, DSL1 complex, multisubunit tethering complex, snare proteins; 2.60A {Kluyveromyces lactis} 10.1016/j.cell.2009.11.002
PVClumt18 PAK_2199 PAK_01997 5ftj 5ftj_A 99.9 1.6e-26 4.2e-31 229.2 >5ftj_A Transitional endoplasmic reticulum ATPase; hydrolase, single-particle, AAA ATPase; HET: ADP OJA; 2.30A {Homo sapiens} PDB: 3cf1_A* 3cf3_A* 3cf2_A* 5ftk_A* 5ftl_A* 5ftm_A* 5ftn_A* 1r7r_A* 5c19_A 5c1b_A* 5c18_A* 3cf0_A* 10.1126/science.aad7974
PVClumt19 PAK_2198 PAK_01996 3lfh 3lfh_A 39.5 12 0.00031 28.9 >3lfh_A Manxa, phosphotransferase system, mannose/fructose-speci component IIA; PTS; 1.80A {Thermoanaerobacter tengcongensis} No DOI found.
PVClumt20 PAK_2197 PAK_01995 1wrd 1wrd_A 43.2 9.4 0.00025 32.8 >1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1 PDB: 2n2n_A 10.1016/j.febslet.2005.08.076
PVClumt21 PAK_2195 PAK_01994 4mix 4mix_A 100.0 8.9e-44 2.3e-48 348.7 >4mix_A Putative insecticidal toxin; tyrosine glycosylation, UDP-GLCNAC, nucleotide-binding domai rossmann-like, glycosyltransferase; HET: MSE UD1; 1.80A {Photorhabdus asymbiotica subsp} 10.1038/nsmb.2688
PVClopt1 PAK_2092 PAK_01896 3eaa 3eaa_A 82.2 0.39 1e-05 33.1 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVClopt2 PAK_2091 PAK_01895 3j9q 3j9q_A 100.0 2.5e-35 6.4e-40 248.6 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClopt3 PAK_2090 PAK_01894 3j9q 3j9q_A 99.9 1.8e-29 4.6e-34 215.9 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClopt4 PAK_2089 PAK_01893 3eaa 3eaa_A 64.9 2.3 6.1e-05 29.4 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVClopt5 PAK_2088 PAK_01892 2v1l 2v1l_A 26.7 26 0.00069 22.5 >2v1l_A Hypothetical protein; pathogenicity island, unknown function; 2.13A {Vibrio cholerae} 10.1002/prot.21993
PVClopt6 PAK_2087 PAK_01891 3zo0 3zo0_A 61.8 2.9 7.7e-05 27.8 >3zo0_A IG gamma-2A chain C region, A allele; immune system-ligase complex; HET: NAG BMA MAN GAL FUC; 1.99A {Mus musculus} PDB: 2rgs_A* 10.1073/pnas.0800159105
PVClopt7 PAK_2086 PAK_01890 4uhv 4uhv_A 99.9 8.4e-29 2.2e-33 236.5 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVClopt8 PAK_2085 PAK_01889 2ia7 2ia7_A 99.8 2.2e-23 5.8e-28 137.0 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVClopt9 PAK_2084 PAK_01888 3ojo 3ojo_A 69.6 1.6 4.2e-05 34.0 >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* 10.1074/jbc.M110.216002
PVClopt10 PAK_2083 PAK_01887 3h2t 3h2t_A 96.8 9.7e-06 2.5e-10 85.1 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVClopt11 PAK_2082 PAK_01886 1ip9 1ip9_A 49.1 6.6 0.00017 31.0 >1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A 10.1093/emboj/20.15.3947
PVClopt12 PAK_2081 PAK_01885 1nvp 1nvp_B 34.5 16 0.00042 26.7 >1nvp_B Transcription initiation factor IIA alpha chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: a.32.1.1 PDB: 5fur_B* 10.1016/S0022-2836(03)00887-8
PVClopt13 PAK_2080 PAK_01884 5e7p 5e7p_A 99.8 4.3e-26 1.1e-30 230.6 >5e7p_A Cell division control protein CDC48; AAA ATPase, M. smegmatic, RECA, hydrolase; HET: ADP PG4 PGE; 2.51A {Mycobacterium smegmatis} 10.1128/JB.00905-15
PVClopt14 PAK_2079 PAK_01883 4x8k 4x8k_B 31.6 19.0 0.0005 28.0 >4x8k_B RNA polymerase-binding protein RBPA, RNA polymerase sigma factor SIGA; transcription activator; HET: EDO; 2.20A {Mycobacterium tuberculosis} PDB: 2m6p_A 10.1073/pnas.1504942112
PVClopt15 PAK_2078 PAK_01882 2l1n 2l1n_A 52.8 5.3 0.00014 27.8 >2l1n_A Uncharacterized protein; DUF1823, hypothetical protein, cyanobacteria, structural GEN PSI-biology, protein structure initiative; NMR {Synechococcus elongatus} No DOI found.
PVClopt16 PAK_2077 PAK_01881 1ukf 1ukf_A 99.8 2.5e-25 6.6e-30 187.7 >1ukf_A Avirulence protein AVRPPH3; AVRPPHB, hypersensitive response, hydrolase; 1.35A {Pseudomonas syringae PV} SCOP: d.3.1.10 10.1073/pnas.2036536100
PVClopt17 PAK_2075 PAK_01880 1t3c 1t3c_A 93.5 0.0089 2.3e-07 65.9 >1t3c_A Neurotoxin type E; catalytic domain, E212Q mutant, light chain, hydrolase; 1.90A {Clostridium botulinum} SCOP: d.92.1.7 PDB: 3d3x_A 1t3a_A 1zl5_A 1zl6_A 1zn3_A 1zkw_A 1zkx_A 10.1021/bi036278w
PVCunit1_1 PAK_2876 PAK_02606 3eaa 3eaa_A 73.2 1.2 3.1e-05 30.8 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVCunit1_2 PAK_2877 PAK_02607 3j9q 3j9q_A 100.0 3.8e-34 1e-38 242.1 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit1_3 PAK_2878 PAK_02608 3j9q 3j9q_A 100.0 6.9e-34 1.8e-38 247.8 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit1_4 PAK_2879 PAK_02609 3j9q 3j9q_A 99.9 6.1e-30 1.6e-34 219.4 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit1_5 PAK_2880 PAK_02610 4tv4 4tv4_A 63.0 2.7 7e-05 30.4 >4tv4_A Uncharacterized protein; unknown function, ssgcid, virulence, structural genomics; 2.10A {Burkholderia pseudomallei} No DOI found.
PVCunit1_6 PAK_2881 PAK_02611 4yci 4yci_A 66.4 2.1 5.4e-05 26.8 >4yci_A Bone morphogenetic protein 9 growth factor domain; Pro-BMP complex, transforming growth factor-beta cytokine; HET: NAG; 3.25A {Mus musculus} PDB: 4ycg_A* 10.1073/pnas.1501303112
PVCunit1_7 PAK_2882 PAK_02612 5a3a 5a3a_A 54.5 4.8 0.00012 32.0 >5a3a_A SIR2 family protein; transferase, P-ribosyltransferase, metalloprotein, NAD-depen lipoylation, regulatory enzyme, rossmann fold; 1.54A {Streptococcus pyogenes} PDB: 5a3b_A* 5a3c_A* 10.1016/j.molcel.2015.06.013
PVCunit1_8 PAK_2883 PAK_02613 4uhv 4uhv_A 99.9 2.4e-30 6.4e-35 247.1 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVCunit1_9 PAK_2884 PAK_02614 2ia7 2ia7_A 99.7 1e-21 2.6e-26 131.7 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCunit1_10 PAK_2885 PAK_02615 1ngv 1ngv_A 43.2 9.4 0.00025 31.0 >1ngv_A Amyloid beta precursor protein-binding protein 1; signaling protein; 2.60A {Homo sapiens} PDB: 3gzn_A* 1yov_A 2nvu_A* 1r4m_A 1r4n_A* 1tt5_A 3dbh_A 3dbl_A 3dbr_A Key error. ID likely deprecated.
PVCunit1_11 PAK_2886 PAK_02616 3h2t 3h2t_A 96.6 1.9e-05 4.9e-10 79.9 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCunit1_12 PAK_2887 PAK_02617 1s5u 1s5u_A 40.5 11 0.00029 29.0 >1s5u_A Protein YBGC; structural genomics, hypothetical protein, thioesterase fold, PSI, protein structure initiative; 1.70A {Escherichia coli} SCOP: d.38.1.1 PDB: 5kl9_A* 5t07_A* 5t06_A* No DOI found.
PVCunit1_13 PAK_2888 PAK_02618 3izo 3izo_F 98.9 5.7e-13 1.5e-17 133.9 >3izo_F Fiber; pentameric penton base, trimeri viral protein; 3.60A {Human adenovirus 5} 10.1016/j.jmb.2010.11.043
PVCunit1_14 PAK_2889 PAK_02619 1ojh 1ojh_A 20.8 41.0 0.0011 26.2 >1ojh_A NBLA; degradation protein, phycobilisome degradation, protein BIND; HET: MSE; 1.80A {Anabaena SP} SCOP: a.214.1.1 10.1074/jbc.M507243200
PVCunit1_15 PAK_2890 PAK_02620 5e7p 5e7p_A 99.9 1.8e-26 4.6e-31 233.6 >5e7p_A Cell division control protein CDC48; AAA ATPase, M. smegmatic, RECA, hydrolase; HET: ADP PG4 PGE; 2.51A {Mycobacterium smegmatis} 10.1128/JB.00905-15
PVCunit1_16 PAK_2891 PAK_02621 5fvk 5fvk_C 25.4 29.0 0.00076 20.8 >5fvk_C VFA1, VPS4-associated protein 1; hydrolase, MIT domain, yeast, ATPase; 1.66A {Saccharomyces cerevisiae} PDB: 4niq_C 10.1016/j.jmb.2016.04.007
PVCunit1_17 PAK_2892 PAK_02622 1cii 1cii_A 63.2 2.7 6.9e-05 41.7 >1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1 10.1038/385461a0
PVCunit1_18 PAK_2893 PAK_02623 3mfx 3mfx_A 51.3 5.8 0.00015 23.5 >3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis} No DOI found.
PVCunit1_19 PAK_2894 PAK_02624 3fnb 3fnb_A 74.6 1.0 2.7e-05 35.5 >3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix bundle, structural genomics protein structure initiative; HET: PGE; 2.12A {Streptococcus mutans} No DOI found.
PVCunit1_20 PAK_2895 PAK_02625 1ocy 1ocy_A 97.2 1.6e-06 4.1e-11 65.1 >1ocy_A Bacteriophage T4 short tail fibre; structural protein, fibrous protein, LIPO-polysaccharide binding, bacteriophage structural protein; HET: CIT; 1.5A {Bacteriophage T4} SCOP: d.231.1.1 10.1016/S0022-2836(03)00755-1
PVCunit1_21 PAK_2896 PAK_02626 1vyy 1vyy_A 100.0 5.8e-35 1.5e-39 231.2 >1vyy_A Lectin; sugar-binding protein, D-mannose, plant pathogen; HET: BMA MAN; 1.00A {Ralstonia solanacearum} PDB: 1uqx_A* 2chh_A* Key error. ID likely deprecated.
PVCcif1 plu2531 PLT_02568 3jqo 3jqo_B 47.2 7.4 0.00019 27.7 >3jqo_B TRAO protein; helical outer membrane TM, outer membrane protein complex, T protein; HET: LDA; 2.60A {Escherichia coli} PDB: 3zbi_B 2ofq_A 10.1038/nature08588
PVCcif2 plu2530 PLT_02567 3j9q 3j9q_A 99.9 1.5e-31 4e-36 226.6 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCcif3 plu2529 PLT_02566 3j9q 3j9q_A 100.0 3.8e-36 9.8e-41 262.4 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCcif4 plu2528 PLT_02565 3j9q 3j9q_A 99.9 2.2e-28 5.7e-33 209.6 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCcif5 plu2527 PLT_02564 4tv4 4tv4_A 68.0 1.8 4.8e-05 31.3 >4tv4_A Uncharacterized protein; unknown function, ssgcid, virulence, structural genomics; 2.10A {Burkholderia pseudomallei} No DOI found.
PVCcif6 plu2526 PLT_02563 1use 1use_A 63.2 2.7 6.9e-05 23.2 >1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A 10.1073/pnas.0403069101
PVCcif7 plu2525 PLT_02562 4bs6 4bs6_A 22.6 35 0.00092 24.5 >4bs6_A Cathepsin S; hydrolase, cysteine protease, covalent ligand; HET: JG7; 1.20A {Mus musculus} PDB: 4bpv_A* 4bqv_A* 4bs5_A* 4bsq_A* 4mzo_A* 4mzs_A* 4p6e_A* 2h7j_A* 2f1g_A* 2hh5_B* 2hhn_A* 2hxz_A* 2op3_A* 1ms6_A* 2r9m_A* 2r9n_A* 2r9o_A* 3n3g_A* 3n4c_A* 4p6g_A* 3ovx_A* 2frq_A* 2fra_A* 2fq9_A* 2ft2_A* 2fud_A* 2g7y_A* 1nqc_A* 1npz_A* 2g6d_A* ... No DOI found.
PVCcif8 plu2524 PLT_02561 4uhv 4uhv_A 99.9 3.3e-27 8.6e-32 225.6 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVCcif9 plu2523 PLT_02560 2ia7 2ia7_A 99.8 5.4e-25 1.4e-29 146.2 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCcif10 plu2522 PLT_02559 4jiw 4jiw_D 77.4 0.75 2e-05 28.8 >4jiw_D C1882, putative uncharacterized protein; PAAR-repeat motif, membrane piercing, type VI secretion SYST spike, cell puncturing device, beta-helix; 3.40A {Escherichia coli} 10.1038/nature12453
PVCcif11 plu2521 PLT_02558 3h2t 3h2t_A 96.6 2.6e-05 6.7e-10 79.0 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCcif12 plu2520 PLT_02557 1fho 1fho_A 64.0 2.5 6.5e-05 33.9 >1fho_A UNC-89; pleckstrin homology domain, electrostatics, muscle, signal transduction, signaling protein; NMR {Caenorhabditis elegans} SCOP: b.55.1.1 10.1016/S0969-2126(00)00509-8
PVCcif13 plu2519 PLT_02556 2xgf 2xgf_A 96.8 1.2e-05 3e-10 70.6 >2xgf_A Long tail fiber protein P37; viral protein; 2.20A {Enterobacteria phage T4} 10.1073/pnas.1011218107
PVCcif14 plu2518 PLT_02555 3b1j 3b1j_C 41.9 10 0.00027 26.0 >3b1j_C CP12; alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_C* 10.1016/j.str.2011.08.016
PVCcif15 plu2517 PLT_02554 5e7p 5e7p_A 99.9 3.4e-27 8.9e-32 238.8 >5e7p_A Cell division control protein CDC48; AAA ATPase, M. smegmatic, RECA, hydrolase; HET: ADP PG4 PGE; 2.51A {Mycobacterium smegmatis} 10.1128/JB.00905-15
PVCcif16 plu2516 PLT_02553 1u1j 1u1j_A 39.0 12 0.00032 35.6 >1u1j_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; methionine, synthase, methyltetrahydrofolate; HET: C2F; 2.40A {Arabidopsis thaliana} SCOP: c.1.22.2 c.1.22.2 PDB: 1u1h_A* 1u1u_A 1u22_A* 10.1074/jbc.C400325200
PVCcif17 plu2515 PLT_02552 4fbj 4fbj_A 100.0 3e-109 7e-114 735.1 >4fbj_A CIF, hypothetical protein; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Photorhabdus luminescens subsp} PDB: 3gqj_A No DOI found.
PVCcif18 plu2514 PLT_02551 3wmi 3wmi_B 20.6 41 0.0011 24.0 >3wmi_B EIAV GP45 wild type; alpha-helix, virus fusion, viral protein; 1.90A {Equine} PDB: 3wmj_B No DOI found.
PVClopt1 plu2385 PLT_02424 3eaa 3eaa_A 82.7 0.37 9.5e-06 33.4 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVClopt2 plu2386 PLT_02425 3j9q 3j9q_A 99.9 4.2e-33 1.1e-37 235.7 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClopt3 plu2387 PLT_02426 3j9q 3j9q_A 100.0 4.1e-34 1.1e-38 247.2 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClopt4 plu2388 PLT_02427 3j9q 3j9q_A 99.9 5.2e-31 1.3e-35 225.1 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClopt5 plu2389 PLT_02428 4tv4 4tv4_A 66.1 2.1 5.6e-05 30.9 >4tv4_A Uncharacterized protein; unknown function, ssgcid, virulence, structural genomics; 2.10A {Burkholderia pseudomallei} No DOI found.
PVClopt6 plu2390 PLT_02429 4zmk 4zmk_A 51.9 5.6 0.00015 24.7 >4zmk_A Telomere length regulator TAZ1; dimerization domain, fission yeast, DNA binding PR; 1.50A {Schizosaccharomyces pombe} 10.1038/cr.2015.76
PVClopt7 plu2391 PLT_02430 5a3a 5a3a_A 48.7 6.8 0.00018 31.1 >5a3a_A SIR2 family protein; transferase, P-ribosyltransferase, metalloprotein, NAD-depen lipoylation, regulatory enzyme, rossmann fold; 1.54A {Streptococcus pyogenes} PDB: 5a3b_A* 5a3c_A* 10.1016/j.molcel.2015.06.013
PVClopt8 plu2392 PLT_02431 4uhv 4uhv_A 99.9 3.8e-31 1e-35 252.7 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVClopt9 plu2393 PLT_02432 2ia7 2ia7_A 99.8 1.1e-23 2.7e-28 140.3 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVClopt10 plu2394 PLT_02433 4jiw 4jiw_D 61.0 3.1 8.1e-05 26.0 >4jiw_D C1882, putative uncharacterized protein; PAAR-repeat motif, membrane piercing, type VI secretion SYST spike, cell puncturing device, beta-helix; 3.40A {Escherichia coli} 10.1038/nature12453
PVClopt11 plu2395 PLT_02434 3h2t 3h2t_A 97.5 2.7e-07 7.1e-12 96.6 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVClopt12 plu2396 PLT_02435 1pqx 1pqx_A 49.6 6.5 0.00017 33.3 >1pqx_A Conserved hypothetical protein; ZR18,structure, autostructure,spins,autoassign, northeast structural genomics consortium; NMR {Staphylococcus aureus subsp} SCOP: d.267.1.1 PDB: 2ffm_A 2m6q_A 2m8w_A No DOI found.
PVClopt13 plu2397 PLT_02436 2j9w 2j9w_A 27.5 25 0.00065 28.7 >2j9w_A VPS28, VPS28-PROV protein; NZF finger, HIV budding, protein transport; 1.30A {Xenopus laevis} 10.1038/sj.emboj.7601501
PVClopt14 plu2398 PLT_02437 5e7p 5e7p_A 99.9 4.6e-27 1.2e-31 237.8 >5e7p_A Cell division control protein CDC48; AAA ATPase, M. smegmatic, RECA, hydrolase; HET: ADP PG4 PGE; 2.51A {Mycobacterium smegmatis} 10.1128/JB.00905-15
PVClopt15 plu2399 PLT_02438 3b33 3b33_A 21.2 40.0 0.001 18.4 >3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633} No DOI found.
PVClopt16 plu2400 PLT_02439 2ebf 2ebf_X 100.0 1.6e-85 4.1e-90 674.4 >2ebf_X Dermonecrotic toxin; pasteurella multocida toxin, trojan horse-like fold; HET: TRE; 1.90A {Pasteurella multocida} SCOP: a.296.1.1 c.150.1.2 d.3.1.17 PDB: 2ec5_A 2ebh_X* 10.1073/pnas.0608197104
PVClopt17 plu2401 PLT_02440 1ukf 1ukf_A 99.8 1.6e-25 4.2e-30 188.8 >1ukf_A Avirulence protein AVRPPH3; AVRPPHB, hypersensitive response, hydrolase; 1.35A {Pseudomonas syringae PV} SCOP: d.3.1.10 10.1073/pnas.2036536100
PVCunit1_1 plu1730 PLT_01758 3eaa 3eaa_A 77.0 0.79 2.1e-05 31.7 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVCunit1_2 plu1729 PLT_01757 3j9q 3j9q_A 100.0 2.6e-35 6.7e-40 248.9 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit1_3 plu1728 PLT_01756 3j9q 3j9q_A 100.0 8.6e-34 2.2e-38 247.3 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit1_4 plu1727 PLT_01755 3j9q 3j9q_A 99.9 2.5e-29 6.6e-34 215.0 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit1_5 plu1726 PLT_01754 3eaa 3eaa_A 82.2 0.39 1e-05 33.3 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVCunit1_6 plu1725 PLT_01753 1use 1use_A 58.6 3.7 9.6e-05 22.6 >1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A 10.1073/pnas.0403069101
PVCunit1_7 plu1724 PLT_01752 1avo 1avo_B 32.8 18 0.00046 27.2 >1avo_B 11S regulator; proteasome activator, cell adhesion, interferon induction; 2.80A {Homo sapiens} SCOP: a.24.8.1 10.1038/37670
PVCunit1_8 plu1723 PLT_01751 4uhv 4uhv_A 99.9 4e-29 1e-33 238.8 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVCunit1_9 plu1722 PLT_01750 2ia7 2ia7_A 99.2 2.9e-15 7.7e-20 106.9 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCunit1_10 plu1721 PLT_01749 2fwm 2fwm_X 33.8 17 0.00043 23.1 >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossmann fold, chorismate metabolism, short-CH oxidoreductase, tetramer; 2.00A {Escherichia coli} 10.1107/S0907444906015824
PVCunit1_11 plu1720 PLT_01748 3h2t 3h2t_A 96.0 0.00015 4e-09 73.4 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCunit1_12 plu1719 PLT_01747 1pqx 1pqx_A 53.4 5.1 0.00013 33.8 >1pqx_A Conserved hypothetical protein; ZR18,structure, autostructure,spins,autoassign, northeast structural genomics consortium; NMR {Staphylococcus aureus subsp} SCOP: d.267.1.1 PDB: 2ffm_A 2m6q_A 2m8w_A No DOI found.
PVCunit1_13 plu1718 PLT_01746 1ocy 1ocy_A 98.0 9.6e-09 2.5e-13 86.7 >1ocy_A Bacteriophage T4 short tail fibre; structural protein, fibrous protein, LIPO-polysaccharide binding, bacteriophage structural protein; HET: CIT; 1.5A {Bacteriophage T4} SCOP: d.231.1.1 10.1016/S0022-2836(03)00755-1
PVCunit1_14 plu1717 PLT_01745 5l3x 5l3x_B 17.9 52.0 0.0013 32.1 >5l3x_B Negative elongation factor C/D; transcription, repressor, transcription regulation, gene EXP; 2.75A {Homo sapiens} 10.7554/eLife.14981
PVCunit1_15 plu1716 PLT_01744 5e7p 5e7p_A 99.8 2.9e-25 7.6e-30 224.7 >5e7p_A Cell division control protein CDC48; AAA ATPase, M. smegmatic, RECA, hydrolase; HET: ADP PG4 PGE; 2.51A {Mycobacterium smegmatis} 10.1128/JB.00905-15
PVCunit1_16 plu1715 PLT_01743 1vwx 1vwx_f 22.5 36 0.00093 27.1 >1vwx_f Ribosomal protein EL33; mammalian, ribosome; 3.40A {Sus scrofa} PDB: 1vwz_f 1vx1_f 1vx4_f 3j3b_f 4cxd_f 4upx_f 4uq1_f 4w20_f 4w22_f 4w25_f 4w27_f Key error. ID likely deprecated.
PVCunit1_17 plu1714 PLT_01742 1eb6 1eb6_A 82.4 0.38 1e-05 31.5 >1eb6_A Neutral protease II; metalloproteinase, zinc, hydrolase; 1.0A {Aspergillus oryzae} SCOP: d.92.1.12 10.1107/S090744490101335X
PVCunit1_18 plu1713 PLT_01741 2hwn 2hwn_E 27.0 26 0.00068 21.9 >2hwn_E A kinase binding peptide; PKA, AKAP, dimerization/docking, D/D, regulatory subunit, TR; 1.60A {Rattus norvegicus} 10.1016/j.molcel.2006.09.015
PVCunit1_19 plu1712 PLT_01740 1yrt 1yrt_A 98.1 2.8e-09 7.3e-14 98.9 >1yrt_A Bifunctional hemolysin-adenylate cyclase; CYAA, layse, toxin; 2.10A {Bordetella pertussis} PDB: 1yru_A 1zot_A* 2col_A 10.1038/sj.emboj.7600800
PVCunit2_1 plu1708 PLT_01736 3eaa 3eaa_A 69.5 1.6 4.2e-05 30.1 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVCunit2_2 plu1707 PLT_01735 3j9q 3j9q_A 100.0 1.2e-33 3.2e-38 239.0 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit2_3 plu1706 PLT_01734 3j9q 3j9q_A 100.0 1.6e-34 4.3e-39 253.7 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit2_4 plu1705 PLT_01733 3j9q 3j9q_A 99.9 7.2e-30 1.9e-34 219.0 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit2_5 plu1704 PLT_01732 4etv 4etv_A 39.0 12 0.00032 27.6 >4etv_A Ryanodine receptor 2; phosphorylation, cardiac, metal transport; 1.65A {Mus musculus} 10.1016/j.str.2012.04.015
PVCunit2_6 plu1703 PLT_01731 4e71 4e71_A 53.7 5.0 0.00013 24.5 >4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens} No DOI found.
PVCunit2_7 plu1702 PLT_01730 5a3a 5a3a_A 64.0 2.5 6.6e-05 33.5 >5a3a_A SIR2 family protein; transferase, P-ribosyltransferase, metalloprotein, NAD-depen lipoylation, regulatory enzyme, rossmann fold; 1.54A {Streptococcus pyogenes} PDB: 5a3b_A* 5a3c_A* 10.1016/j.molcel.2015.06.013
PVCunit2_8 plu1701 PLT_01729 4uhv 4uhv_A 99.9 2.2e-30 5.8e-35 247.3 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVCunit2_9 plu1700 PLT_01728 2ia7 2ia7_A 99.7 1.1e-22 2.9e-27 138.2 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCunit2_10 plu1699 PLT_01727 2k4r 2k4r_A 34.4 16 0.00042 21.1 >2k4r_A Neurotrypsin; kringle domain, disulfide-rich protein fold, serine endopeptidase, hydrolase, extracellular proteolysis; NMR {Rattus norvegicus} PDB: 2k51_A 10.1021/bi800555z
PVCunit2_11 plu1698 PLT_01726 3h2t 3h2t_A 96.8 8e-06 2.1e-10 82.6 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCunit2_12 plu1697 PLT_01725 3sok 3sok_A 25.8 28.0 0.00073 29.3 >3sok_A Fimbrial protein; pilus subunit, extracellular, cell adhesion; 2.30A {Dichelobacter nodosus} 10.1074/jbc.M111.297242
PVCunit2_13 plu1696 PLT_01724 3izo 3izo_F 98.4 3.3e-10 8.5e-15 108.7 >3izo_F Fiber; pentameric penton base, trimeri viral protein; 3.60A {Human adenovirus 5} 10.1016/j.jmb.2010.11.043
PVCunit2_14 plu1695 PLT_01723 4u7b 4u7b_A 99.8 2e-23 5.3e-28 167.0 >4u7b_A Mariner MOS1 transposase; transposon synaptic complex, helix-turn-helix, like fold, DNA transposition, hydrolase-DNA complex; HET: DNA; 3.09A {Drosophila mauritiana} PDB: 4r79_A 3hos_A* 3hot_A 10.1093/nar/gkv096
PVCunit2_15 plu1694 PLT_01722 2mdp 2mdp_A 23.8 32.0 0.00085 28.7 >2mdp_A Gene 1.2 protein; dntpase inhibitor, viral protein; NMR {Enterobacteria phage T7} No DOI found.
PVCunit2_16 plu1693 PLT_01721 5e7p 5e7p_A 99.8 7.7e-26 2e-30 228.7 >5e7p_A Cell division control protein CDC48; AAA ATPase, M. smegmatic, RECA, hydrolase; HET: ADP PG4 PGE; 2.51A {Mycobacterium smegmatis} 10.1128/JB.00905-15
PVCunit2_17 plu1692 PLT_01720 3ggm 3ggm_A 54.2 4.9 0.00013 26.2 >3ggm_A Uncharacterized protein BT9727_2919; bacillus cereus group., structural genomics, PSI-2, protein structure initiative; 2.00A {Bacillus thuringiensis serovarkonkukian} No DOI found.
PVCunit2_18 plu1691 PLT_01719 3u8p 3u8p_A 21.9 37.0 0.00097 31.6 >3u8p_A Cytochrome B562 integral fusion with enhanced GRE fluorescent protein; directed evolution, domain insertion, energy transfer, fluor quenching; HET: CRO HEM; 2.75A {Aequorea victoria} 10.1021/ja301987h
PVCunit2_19 plu1690 PLT_01718 2rio 2rio_A 79.3 0.6 1.6e-05 29.0 >2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* 10.1016/j.cell.2007.10.057
PVCunit2_20 plu1689 PLT_01717 2lqt 2lqt_A 37.7 13 0.00034 28.2 >2lqt_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 7; CHCH domain, mitochondrial import, alpha-hairpin, MIA40-DEPE disulfide relay system; NMR {Homo sapiens} 10.1016/j.jsb.2012.07.007
PVCunit3_1 plu1689 PLT_01716 1l4i 1l4i_A 69.3 1.7 4.3e-05 30.5 >1l4i_A SFAE protein; periplasmic chaperone, immunoglobulin fold; 2.20A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 10.1107/S0907444902005954
PVCunit3_2 plu1688 PLT_01715 3j9q 3j9q_A 100.0 8.9e-34 2.3e-38 240.0 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit3_3 plu1687 PLT_01714 3j9q 3j9q_A 100.0 3.8e-34 1e-38 249.4 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit3_4 plu1686 PLT_01713 3j9q 3j9q_A 99.9 9.2e-29 2.4e-33 211.5 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit3_5 plu1685 PLT_01712 4tv4 4tv4_A 61.4 3.0 7.9e-05 30.2 >4tv4_A Uncharacterized protein; unknown function, ssgcid, virulence, structural genomics; 2.10A {Burkholderia pseudomallei} No DOI found.
PVCunit3_6 plu1684 PLT_01711 1x8d 1x8d_A 72.3 1.3 3.3e-05 26.0 >1x8d_A Hypothetical protein YIIL; mutarotase, L-rhamnose, biosynthetic protein; HET: RNS; 1.80A {Escherichia coli} SCOP: d.58.4.21 10.1016/j.jmb.2005.03.047
PVCunit3_7 plu1683 PLT_01710 1avo 1avo_B 30.8 20 0.00052 26.9 >1avo_B 11S regulator; proteasome activator, cell adhesion, interferon induction; 2.80A {Homo sapiens} SCOP: a.24.8.1 10.1038/37670
PVCunit3_8 plu1682 PLT_01709 4uhv 4uhv_A 99.9 9.8e-29 2.5e-33 236.1 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVCunit3_9 plu1681 PLT_01708 2ia7 2ia7_A 99.7 9e-21 2.4e-25 127.1 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCunit3_10 plu1680 PLT_01707 4rnd 4rnd_B 32.1 18 0.00048 24.5 >4rnd_B V-type proton ATPase subunit F; alpha helical, rossmann fold, hydrolase, regulatory, couplin; 3.18A {Saccharomyces cerevisiae S288C} PDB: 3j9u_N 3j9v_N 3j9t_N 5d80_o 10.1074/jbc.M114.622688
PVCunit3_11 plu1679 PLT_01706 3h2t 3h2t_A 96.0 0.00014 3.8e-09 73.6 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCunit3_12 plu1678 PLT_01705 5a9c 5a9c_A 33.6 17 0.00044 36.7 >5a9c_A Polyhedrin; viral protein, insect virus occlusion BODY, microcrystal; 1.71A {Antheraea mylitta cypovirus 4} 10.1016/j.jsb.2015.08.009
PVCunit3_13 plu1677 PLT_01704 1ocy 1ocy_A 96.8 1.2e-05 3.1e-10 66.1 >1ocy_A Bacteriophage T4 short tail fibre; structural protein, fibrous protein, LIPO-polysaccharide binding, bacteriophage structural protein; HET: CIT; 1.5A {Bacteriophage T4} SCOP: d.231.1.1 10.1016/S0022-2836(03)00755-1
PVCunit3_14 plu1676 PLT_01703 2qcp 2qcp_X 18.9 48.0 0.0012 25.7 >2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X 10.1110/ps.073021307
PVCunit3_15 plu1675 PLT_01702 5e7p 5e7p_A 99.9 8.1e-27 2.1e-31 236.0 >5e7p_A Cell division control protein CDC48; AAA ATPase, M. smegmatic, RECA, hydrolase; HET: ADP PG4 PGE; 2.51A {Mycobacterium smegmatis} 10.1128/JB.00905-15
PVCunit3_16 plu1674 PLT_01701 4faz 4faz_A 33.5 17 0.00044 20.9 >4faz_A 4-oxalocrotonate isomerase protein; alpha/beta fold, tautomerase; 1.57A {Methylibium petroleiphilum} 10.1016/j.abb.2013.06.016
PVCunit3_17 plu1673 PLT_01700 1vwx 1vwx_f 46.3 7.9 0.00021 26.0 >1vwx_f Ribosomal protein EL33; mammalian, ribosome; 3.40A {Sus scrofa} PDB: 1vwz_f 1vx1_f 1vx4_f 3j3b_f 4cxd_f 4upx_f 4uq1_f 4w20_f 4w22_f 4w25_f 4w27_f Key error. ID likely deprecated.
PVCunit3_18 plu1672 PLT_01699 1wyp 1wyp_A 23.3 34 0.00088 25.8 >1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} No DOI found.
PVCunit3_19 plu1671 PLT_01698 2a7o 2a7o_A 21.3 39 0.001 26.3 >2a7o_A Huntingtin interacting protein B; SRI domain, SRI, HSRI, SET2, HSET2, phosphoctd associating protein, SET2 RPB1-interacting domain, PCID, PCAP; NMR {Homo sapiens} 10.1073/pnas.0506350102
PVCunit4_1 plu1667 PLT_01696 3eaa 3eaa_A 74.4 1.0 2.7e-05 31.1 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVCunit4_2 plu1666 PLT_01695 3j9q 3j9q_A 100.0 1.4e-33 3.8e-38 238.7 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit4_3 plu1665 PLT_01694 3j9q 3j9q_A 100.0 6.2e-35 1.6e-39 255.3 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit4_4 plu1664 PLT_01693 3j9q 3j9q_A 99.9 9.4e-30 2.5e-34 218.9 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit4_5 plu1663 PLT_01692 4tv4 4tv4_A 69.4 1.6 4.3e-05 31.6 >4tv4_A Uncharacterized protein; unknown function, ssgcid, virulence, structural genomics; 2.10A {Burkholderia pseudomallei} No DOI found.
PVCunit4_6 plu1662 PLT_01691 3hk4 3hk4_A 45.6 8.2 0.00021 20.2 >3hk4_A MLR7391 protein; NTF2-like protein, structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, lyase; HET: MSE; 1.96A {Mesorhizobium loti} No DOI found.
PVCunit4_7 plu1661 PLT_01690 5a3a 5a3a_A 47.6 7.3 0.00019 30.9 >5a3a_A SIR2 family protein; transferase, P-ribosyltransferase, metalloprotein, NAD-depen lipoylation, regulatory enzyme, rossmann fold; 1.54A {Streptococcus pyogenes} PDB: 5a3b_A* 5a3c_A* 10.1016/j.molcel.2015.06.013
PVCunit4_8 plu1660 PLT_01689 4uhv 4uhv_A 99.9 1.8e-31 4.7e-36 254.9 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVCunit4_9 plu1659 PLT_01688 2ia7 2ia7_A 99.7 4.8e-22 1.3e-26 135.0 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCunit4_10 plu1658 PLT_01687 2k4r 2k4r_A 30.7 20 0.00053 20.7 >2k4r_A Neurotrypsin; kringle domain, disulfide-rich protein fold, serine endopeptidase, hydrolase, extracellular proteolysis; NMR {Rattus norvegicus} PDB: 2k51_A 10.1021/bi800555z
PVCunit4_11 plu1657 PLT_01686 3h2t 3h2t_A 96.6 2.6e-05 6.8e-10 78.9 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCunit4_12 plu1656 PLT_01685 3p9y 3p9y_A 33.1 17.0 0.00045 36.4 >3p9y_A CG14216, LD40846P; phosphatase, CIS proline, LMW PTP-like fold, RNA polymerase hydrolase; HET: N7P SEP SET IMD PG4; 2.10A {Drosophila melanogaster} PDB: 4imi_B* 4imj_B* 4ygx_B* 3fdf_A 3fmv_A 3omx_A 3omw_A 10.1074/jbc.M110.197129
PVCunit4_13 plu1655 PLT_01684 1ocy 1ocy_A 98.1 3.8e-09 9.9e-14 88.4 >1ocy_A Bacteriophage T4 short tail fibre; structural protein, fibrous protein, LIPO-polysaccharide binding, bacteriophage structural protein; HET: CIT; 1.5A {Bacteriophage T4} SCOP: d.231.1.1 10.1016/S0022-2836(03)00755-1
PVCunit4_14 plu1654 PLT_01683 2kx7 2kx7_A 33.4 17.0 0.00044 31.7 >2kx7_A Sensor-like histidine kinase YOJN; alpha-beta-loop (ABL) domain, phosphotransfer, RCS regulatio two-component system, protein binding; NMR {Escherichia coli} 10.1016/j.str.2011.01.012
PVCunit4_15 plu1653 PLT_01682 5e7p 5e7p_A 99.8 3.5e-25 9e-30 224.4 >5e7p_A Cell division control protein CDC48; AAA ATPase, M. smegmatic, RECA, hydrolase; HET: ADP PG4 PGE; 2.51A {Mycobacterium smegmatis} 10.1128/JB.00905-15
PVCunit4_16 plu1652 PLT_01681 4p7x 4p7x_A 18.4 50.0 0.0013 28.5 >4p7x_A P4H, L-proline CIS-4-hydroxylase; HET: AKG CXS; 1.30A {Rhizobium loti} PDB: 4p7w_A* 10.1021/sb500247a
PVCunit4_17 plu1651 PLT_01680 2yy0 2yy0_A 42.7 9.7 0.00025 26.4 >2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens} No DOI found.
PVCpnf1 PAU_03353 PAU_03392 3eaa 3eaa_A 62.9 2.7 7.1e-05 29.0 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVCpnf2 PAU_03352 PAU_03391 3j9q 3j9q_A 100.0 2e-34 5.3e-39 243.5 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCpnf3 PAU_03351 PAU_03390 3j9q 3j9q_A 99.9 3.9e-33 1e-37 241.7 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCpnf4 PAU_03350 PAU_03389 3j9q 3j9q_A 99.8 6.4e-26 1.7e-30 195.0 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCpnf5 PAU_03349 PAU_03388 3eaa 3eaa_A 92.7 0.016 4.4e-07 40.3 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVCpnf6 PAU_03348 PAU_03387 4aaa 4aaa_A 73.9 1.1 2.9e-05 27.4 >4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A* No DOI found.
PVCpnf7 PAU_03347 PAU_03386 2v6x 2v6x_B 36.8 14 0.00036 26.4 >2v6x_B DOA4-independent degradation protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae} 10.1038/nature06171
PVCpnf8 PAU_03346 PAU_03385 4uhv 4uhv_A 99.9 8e-29 2.1e-33 236.9 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVCpnf9 PAU_03345 PAU_03384 2ia7 2ia7_A 99.7 9.7e-22 2.6e-26 130.8 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCpnf10 PAU_03344 PAU_03383 1ukf 1ukf_A 82.0 0.4 1.1e-05 36.7 >1ukf_A Avirulence protein AVRPPH3; AVRPPHB, hypersensitive response, hydrolase; 1.35A {Pseudomonas syringae PV} SCOP: d.3.1.10 10.1073/pnas.2036536100
PVCpnf11 PAU_03343 PAU_03382 3h2t 3h2t_A 97.4 4.3e-07 1.2e-11 89.7 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCpnf12 PAU_03342 PAU_03381 2ex2 2ex2_A 39.3 12.0 0.00031 38.0 >2ex2_A Penicillin-binding protein 4; cephem, penem, D-Ala alanine-carboxypeptidase, D-alanyl-D-alanine-endopeptidase, hydrolase; 1.55A {Escherichia coli} SCOP: e.3.1.3 PDB: 2ex6_A* 2ex8_A* 2ex9_A* 2exa_A* 2exb_A* 10.1021/bi051533t
PVCpnf13 PAU_03341 PAU_03380 3izo 3izo_F 98.1 2.7e-09 7.3e-14 107.6 >3izo_F Fiber; pentameric penton base, trimeri viral protein; 3.60A {Human adenovirus 5} 10.1016/j.jmb.2010.11.043
PVCpnf14 PAU_03340 PAU_03379 3c9p 3c9p_A 32.4 18 0.00047 32.2 >3c9p_A Uncharacterized protein SP1917; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 1.96A {Streptococcus pneumoniae} No DOI found.
PVCpnf15 PAU_03339 PAU_03378 5ftj 5ftj_A 99.8 1.2e-25 3.1e-30 222.8 >5ftj_A Transitional endoplasmic reticulum ATPase; hydrolase, single-particle, AAA ATPase; HET: ADP OJA; 2.30A {Homo sapiens} PDB: 3cf1_A* 3cf3_A* 3cf2_A* 5ftk_A* 5ftl_A* 5ftm_A* 5ftn_A* 1r7r_A* 5c19_A 5c1b_A* 5c18_A* 3cf0_A* 10.1126/science.aad7974
PVCpnf16 PAU_03338 PAU_03377 5jbr 5jbr_A 29.2 22 0.00058 23.9 >5jbr_A Uncharacterized protein BCAV_2135; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 1.65A {Beutenbergia cavernae} No DOI found.
PVCpnf17 PAU_03337 PAU_03376 1yrt 1yrt_A 98.5 8.8e-11 2.4e-15 108.6 >1yrt_A Bifunctional hemolysin-adenylate cyclase; CYAA, layse, toxin; 2.10A {Bordetella pertussis} PDB: 1yru_A 1zot_A* 2col_A 10.1038/sj.emboj.7600800
PVCpnf18 PAU_03336 PAU_03375 4tno 4tno_A 62.3 2.8 7.4e-05 23.5 >4tno_A Crispr-associated endoribonuclease CAS2; sulfur SAD, hydrolase; 2.14A {Pyrococcus furiosus} PDB: 2i0x_A 10.1038/nmeth.3211
PVCpnf19 PAU_03334 PAU_03374 3gqe 3gqe_A 62.7 2.7 7.2e-05 25.6 >3gqe_A Non-structural protein 3; macro domain, X domain, venezuelan equine encephalitis virus alphavirus; HET: BCN; 2.30A {Venezuelan equine encephalitis virus} PDB: 3gqo_A* 10.1128/JVI.00189-09
PVCpnf20 PAU_03333 PAU_03373 3szp 3szp_A 99.7 1.6e-21 4.2e-26 126.2 >3szp_A Transcriptional regulator, LYSR family; winged helix-turn helix, DNA-binding, transcription factor; 2.20A {Vibrio cholerae} PDB: 3t1b_B 10.1111/j.1365-2958.2011.07919.x
PVCpnf21 PAU_03332 PAU_03372 1hq0 1hq0_A 100.0 1.1e-64 2.8e-69 458.4 >1hq0_A CNF1, cytotoxic necrotizing factor 1; beta sandwich, RHO deamidase, RHO transglutaminase, toxin; 1.83A {Escherichia coli} SCOP: d.194.1.1 PDB: 1hzg_A 10.1038/89610
PVCpnf22 PAU_03331 PAU_03371 2oyz 2oyz_A 62.7 2.7 7.2e-05 24.7 >2oyz_A UPF0345 protein VPA0057; unknown function, structural genomi 2, protein structure initiative, midwest center for structu genomics, MCSG; 1.71A {Vibrio parahaemolyticus} SCOP: b.82.1.22 No DOI found.
PVCpnf23 PAU_03330 PAU_03370 3hdf 3hdf_A 100.0 2.9e-42 7.6e-47 230.2 >3hdf_A Lysozyme; antimicrobial, bacteriolytic enzyme, glycosid hydrolase, late protein; 1.70A {Enterobacteria phage P21} 10.1038/nsmb.1681
PVCpnf24 PAU_03329 PAU_03369 3vp9 3vp9_A 61.6 2.9 7.8e-05 30.4 >3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A 10.1074/jbc.M112.369652
PVCcif1 PAU_01993 PAU_01961 3jqo 3jqo_B 41.5 10 0.00027 27.0 >3jqo_B TRAO protein; helical outer membrane TM, outer membrane protein complex, T protein; HET: LDA; 2.60A {Escherichia coli} PDB: 3zbi_B 2ofq_A 10.1038/nature08588
PVCcif2 PAU_01994 PAU_01962 3j9q 3j9q_A 99.9 4.4e-33 1.2e-37 236.1 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCcif3 PAU_01995 PAU_01963 3j9q 3j9q_A 99.9 1.3e-30 3.4e-35 228.9 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCcif4 PAU_01996 PAU_01964 3j9q 3j9q_A 99.9 9.4e-27 2.5e-31 199.5 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCcif5 PAU_01997 PAU_01965 4tv4 4tv4_A 57.2 3.9 0.0001 29.5 >4tv4_A Uncharacterized protein; unknown function, ssgcid, virulence, structural genomics; 2.10A {Burkholderia pseudomallei} No DOI found.
PVCcif6 PAU_01998 PAU_01966 3nyi 3nyi_A 42.8 9.4 0.00025 24.7 >3nyi_A FAT acid-binding protein; stearic acid, DEGV family protein, structural genomics, PSI- protein structure initiative; HET: STE; 1.90A {Eubacterium ventriosum} No DOI found.
PVCcif7 PAU_01999 PAU_01967 5a3a 5a3a_A 47.5 7.1 0.00019 30.9 >5a3a_A SIR2 family protein; transferase, P-ribosyltransferase, metalloprotein, NAD-depen lipoylation, regulatory enzyme, rossmann fold; 1.54A {Streptococcus pyogenes} PDB: 5a3b_A* 5a3c_A* 10.1016/j.molcel.2015.06.013
PVCcif8 PAU_02000 PAU_01968 4uhv 4uhv_A 99.9 9.8e-28 2.6e-32 229.1 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVCcif9 PAU_02001 PAU_01969 2ia7 2ia7_A 99.7 7.9e-22 2.1e-26 132.1 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCcif10 PAU_02002 PAU_01970 3dfz 3dfz_A 35.9 14 0.00038 26.2 >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} 10.1042/BJ20080785
PVCcif11 PAU_02003 PAU_01971 3h2t 3h2t_A 96.4 5.1e-05 1.4e-09 76.8 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCcif12 PAU_02004 PAU_01972 4orl 4orl_A 63.3 2.6 6.9e-05 37.5 >4orl_A Uncharacterized protein; PF16022 family, DUF4783, structural genomics, joint center F structural genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Bacteroides ovatus} No DOI found.
PVCcif13 PAU_02005 PAU_01973 1ocy 1ocy_A 98.4 2.2e-10 6e-15 91.7 >1ocy_A Bacteriophage T4 short tail fibre; structural protein, fibrous protein, LIPO-polysaccharide binding, bacteriophage structural protein; HET: CIT; 1.5A {Bacteriophage T4} SCOP: d.231.1.1 10.1016/S0022-2836(03)00755-1
PVCcif14 PAU_02006 PAU_01974 2d8r 2d8r_A 42.5 9.6 0.00026 29.1 >2d8r_A THAP domain-containing protein 2; NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.16 No DOI found.
PVCcif15 PAU_02007 PAU_01975 5ftj 5ftj_A 99.8 3.8e-25 1e-29 218.9 >5ftj_A Transitional endoplasmic reticulum ATPase; hydrolase, single-particle, AAA ATPase; HET: ADP OJA; 2.30A {Homo sapiens} PDB: 3cf1_A* 3cf3_A* 3cf2_A* 5ftk_A* 5ftl_A* 5ftm_A* 5ftn_A* 1r7r_A* 5c19_A 5c1b_A* 5c18_A* 3cf0_A* 10.1126/science.aad7974
PVCcif16 PAU_02008 PAU_01976 4adx 4adx_G 38.8 12 0.00032 27.2 >4adx_G RPLX; ribosome, protein synthesis; 6.60A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2jxt_A 10.1016/j.jmb.2012.01.018
PVCcif17 PAU_02009 PAU_01977 4fbj 4fbj_A 100.0 4.1e-96 1e-100 648.7 >4fbj_A CIF, hypothetical protein; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Photorhabdus luminescens subsp} PDB: 3gqj_A No DOI found.
PVCcif18 PAU_02010 PAU_01978 2b9i 2b9i_C 28.4 23 0.00061 22.2 >2b9i_C MSG5, tyrosine-protein phosphatase MSG5; transferase; HET: ADP; 2.50A {Saccharomyces cerevisiae} 10.1016/j.molcel.2005.10.030
PVCcif19 PAU_02011 PAU_01979 2hxj 2hxj_A 61.1 3.0 8.1e-05 34.1 >2hxj_A Hypothetical protein; APC83807, structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.21A {Neisseria meningitidis MC58} SCOP: a.136.1.1 PDB: 3mw6_A Key error. ID likely deprecated.
PVCcif20 PAU_02012 PAU_01980 3hj6 3hj6_A 50.3 6 0.00016 28.5 >3hj6_A Fructokinase, FRK; fructose, transferase, carbohydrate ME; 2.80A {Halothermothrix orenii} 10.1016/j.jsb.2010.05.007
PVClumT1 PAU_02247 PAU_02206 3eaa 3eaa_A 61.3 3.0 7.9e-05 28.7 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVClumT2 PAU_02246 PAU_02205 3j9q 3j9q_A 99.9 7.9e-31 2.1e-35 228.3 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClumT3 PAU_02245 PAU_02204 3j9q 3j9q_A 99.9 2.8e-28 7.4e-33 208.3 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClumT4 PAU_02244 PAU_02203 3eaa 3eaa_A 52.9 5.1 0.00014 27.7 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVClumT5 PAU_02243 PAU_02202 1use 1use_A 67.8 1.8 4.9e-05 23.9 >1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A 10.1073/pnas.0403069101
PVClumT6 PAU_02242 PAU_02201 4v2x 4v2x_A 30.0 21.0 0.00055 30.7 >4v2x_A Endo-beta-1,4-glucanase (cellulase B); hydrolase, TRI-modular; 1.64A {Bacillus halodurans} 10.1074/jbc.M115.637827
PVClumT7 PAU_02241 PAU_02200 2p5z 2p5z_X 99.7 5.5e-22 1.5e-26 179.9 >2p5z_X Type VI secretion system component; structural genomics, unknown function, PSI-2, protein struct initiative; 2.60A {Escherichia coli O6} SCOP: b.40.8.1 b.106.1.1 b.106.1.1 10.1073/pnas.0813360106
PVClumT8 PAU_02240 PAU_02199 2ia7 2ia7_A 99.7 3.6e-22 9.6e-27 133.8 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVClumT9 afp10 PAU_02198 4jiv 4jiv_D 69.6 1.6 4.2e-05 27.5 >4jiv_D VCA0105, putative uncharacterized protein; PAAR-repeat motif, membrane piercing, type VI secretion SYST vibrio cholerae VGRG2; HET: PLM STE ELA; 1.90A {Vibrio cholerae o1 biovar eltor} 10.1038/nature12453
PVClumT10 afp11 PAU_02197 3h2t 3h2t_A 96.8 9.4e-06 2.5e-10 78.8 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVClumT11 PAU_02237 PAU_02196 1yo5 1yo5_C 39.5 11 0.00031 32.1 >1yo5_C SAM pointed domain containing ETS transcription factor; protein-DNA complex, double helix, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.4.5.21 10.1021/bi047352t
PVClumT12 PAU_02236 PAU_02195 1v1h 1v1h_A 97.7 9.2e-08 2.4e-12 71.3 >1v1h_A Fibritin, fiber protein; chimera; 1.9A {Human adenovirus type 2} SCOP: b.83.1.1 h.1.17.1 PDB: 1v1i_A 10.1016/j.jmb.2004.07.008
PVClumT13 PAU_02235 PAU_02194 1osn 1osn_A 41.0 11 0.00028 36.0 >1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1 10.1074/jbc.M302025200
PVClumT14 PAU_02234 PAU_02193 4uid 4uid_A 63.3 2.6 6.9e-05 31.3 >4uid_A S-layer SBSC, surface layer protein; sugar binding protein, G. stearothermophilus; 2.80A {Geobacillus stearothermophilus} No DOI found.
PVClumT15 PAU_02233 PAU_02192 1tdp 1tdp_A 22.1 36.0 0.00096 27.2 >1tdp_A Carnobacteriocin B2 immunity protein; four-helix bundle, antimicrobial protein; NMR {Carnobacterium maltaromaticum} SCOP: a.29.8.1 10.1021/bi048854+
PVClumT16 PAU_02232 PAU_02191 5ftj 5ftj_A 99.8 2.8e-25 7.6e-30 220.3 >5ftj_A Transitional endoplasmic reticulum ATPase; hydrolase, single-particle, AAA ATPase; HET: ADP OJA; 2.30A {Homo sapiens} PDB: 3cf1_A* 3cf3_A* 3cf2_A* 5ftk_A* 5ftl_A* 5ftm_A* 5ftn_A* 1r7r_A* 5c19_A 5c1b_A* 5c18_A* 3cf0_A* 10.1126/science.aad7974
PVClumT17 PAU_02231 PAU_02190 3lfh 3lfh_A 39.7 11 0.0003 28.9 >3lfh_A Manxa, phosphotransferase system, mannose/fructose-speci component IIA; PTS; 1.80A {Thermoanaerobacter tengcongensis} No DOI found.
PVClumT18 PAU_02230 PAU_02189 4mix 4mix_A 100.0 1.5e-56 4.1e-61 483.6 >4mix_A Putative insecticidal toxin; tyrosine glycosylation, UDP-GLCNAC, nucleotide-binding domai rossmann-like, glycosyltransferase; HET: MSE UD1; 1.80A {Photorhabdus asymbiotica subsp} 10.1038/nsmb.2688
PVClopT1 PAU_02112 PAU_02074 3eaa 3eaa_A 83.5 0.31 8.3e-06 33.5 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVClopT2 PAU_02111 PAU_02073 3j9q 3j9q_A 100.0 2.7e-35 7.3e-40 248.2 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClopT3 PAU_02110 PAU_02072 3j9q 3j9q_A 99.9 3.8e-31 1e-35 226.1 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClopT4 PAU_02109 PAU_02071 4tv4 4tv4_A 70.8 1.4 3.8e-05 31.8 >4tv4_A Uncharacterized protein; unknown function, ssgcid, virulence, structural genomics; 2.10A {Burkholderia pseudomallei} No DOI found.
PVClopT5 PAU_02108 PAU_02070 4hf1 4hf1_A 81.1 0.45 1.2e-05 28.7 >4hf1_A HTH-type transcriptional regulator ISCR; WHTH, protein-DNA complex, iron-sulfur cluster, winged helix helix, transcriptional regulator, redox sensor; HET: DNA; 2.22A {Escherichia coli} PDB: 4hf2_A* 4chu_A 10.1038/nsmb.2568
PVClopT6 PAU_02107 PAU_02069 2vol 2vol_A 28.5 23 0.00061 22.9 >2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A Key error. ID likely deprecated.
PVClopT7 PAU_02106 PAU_02068 4uhv 4uhv_A 99.9 8.4e-30 2.2e-34 243.3 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVClopT8 PAU_02105 PAU_02067 2ia7 2ia7_A 99.8 2.3e-23 6e-28 138.6 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVClopT9 PAU_02104 PAU_02066 3ojo 3ojo_A 31.3 19 0.00051 28.0 >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* 10.1074/jbc.M110.216002
PVClopT10 PAU_02103 PAU_02065 3h2t 3h2t_A 97.1 2.3e-06 6.1e-11 89.7 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVClopT11 PAU_02102 PAU_02064 1pqx 1pqx_A 37.4 13 0.00035 31.4 >1pqx_A Conserved hypothetical protein; ZR18,structure, autostructure,spins,autoassign, northeast structural genomics consortium; NMR {Staphylococcus aureus subsp} SCOP: d.267.1.1 PDB: 2ffm_A 2m6q_A 2m8w_A No DOI found.
PVClopT12 PAU_02101 PAU_02063 4yap 4yap_A 31.1 19 0.00052 29.1 >4yap_A Glutathione S-transferase homolog; GSH-lyase GSH-dependent; 1.11A {Sphingobium SP} PDB: 4g10_A 4yav_A* 10.1074/jbc.M115.700427
PVClopT13 PAU_02100 PAU_02062 5ftj 5ftj_A 99.8 2.3e-24 6e-29 213.4 >5ftj_A Transitional endoplasmic reticulum ATPase; hydrolase, single-particle, AAA ATPase; HET: ADP OJA; 2.30A {Homo sapiens} PDB: 3cf1_A* 3cf3_A* 3cf2_A* 5ftk_A* 5ftl_A* 5ftm_A* 5ftn_A* 1r7r_A* 5c19_A 5c1b_A* 5c18_A* 3cf0_A* 10.1126/science.aad7974
PVClopT14 PAU_02099 PAU_02061 3rbt 3rbt_A 19.3 45.0 0.0012 25.1 >3rbt_A Glutathione transferase O1; glutathione S-transferase omega3; 2.20A {Bombyx mori} 10.1016/j.jmb.2011.07.019
PVClopT15 PAU_02098 PAU_02060 2ebf 2ebf_X 100.0 5.5e-90 1.5e-94 707.6 >2ebf_X Dermonecrotic toxin; pasteurella multocida toxin, trojan horse-like fold; HET: TRE; 1.90A {Pasteurella multocida} SCOP: a.296.1.1 c.150.1.2 d.3.1.17 PDB: 2ec5_A 2ebh_X* 10.1073/pnas.0608197104
PVClopT16 PAU_02097 PAU_02059 4kt0 4kt0_E 17.5 53.0 0.0014 25.3 >4kt0_E Photosystem I reaction center subunit IV; photosynthetic reaction center, membrane complex, plastocyan cytochrome C6, ferredoxin; HET: PQN LHG CL0 BCR CLA LMU LMG; 2.80A {Synechocystis SP} PDB: 4l6v_E* 1gxi_E 1pse_A 1psf_A 10.7554/eLife.01496
PVClopT17 PAU_02096 PAU_02058 1ukf 1ukf_A 99.9 1.4e-26 3.8e-31 195.3 >1ukf_A Avirulence protein AVRPPH3; AVRPPHB, hypersensitive response, hydrolase; 1.35A {Pseudomonas syringae PV} SCOP: d.3.1.10 10.1073/pnas.2036536100
PVClopT18 PAU_02095 PAU_02057 4igl 4igl_B 100.0 2.8e-60 7.5e-65 459.9 >4igl_B YENC2; beta-propeller, RHS, toxin complex, toxin transporter/chaper secreted, toxin; 2.49A {Yersinia} 10.1038/nature12465
PVCunit1_1 afp1 PAU_02775 3eaa 3eaa_A 73.0 1.2 3.1e-05 30.8 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVCunit1_2 afp2 PAU_02776 3j9q 3j9q_A 100.0 3.6e-36 9.7e-41 254.4 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit1_3 afp3 PAU_02777 3j9q 3j9q_A 100.0 2.6e-35 6.9e-40 257.2 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit1_4 afp4 PAU_02778 3j9q 3j9q_A 99.9 3.6e-29 9.5e-34 214.6 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit1_5 afp5 PAU_02779 4tv4 4tv4_A 63.6 2.5 6.7e-05 30.5 >4tv4_A Uncharacterized protein; unknown function, ssgcid, virulence, structural genomics; 2.10A {Burkholderia pseudomallei} No DOI found.
PVCunit1_6 afp7 PAU_02780 4e71 4e71_A 48.7 6.6 0.00018 24.0 >4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens} No DOI found.
PVCunit1_7 afp7 PAU_02781 5a3a 5a3a_A 45.8 7.9 0.00021 30.6 >5a3a_A SIR2 family protein; transferase, P-ribosyltransferase, metalloprotein, NAD-depen lipoylation, regulatory enzyme, rossmann fold; 1.54A {Streptococcus pyogenes} PDB: 5a3b_A* 5a3c_A* 10.1016/j.molcel.2015.06.013
PVCunit1_8 PAU_02796 PAU_02782 4uhv 4uhv_A 99.9 1.4e-30 3.7e-35 248.7 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVCunit1_9 afp9 PAU_02783 2ia7 2ia7_A 99.7 5.3e-22 1.4e-26 133.1 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCunit1_10 afp10 PAU_02784 1pml 1pml_A 37.7 13 0.00034 21.4 >1pml_A Tissue plasminogen activator kringle 2; hydrolase(serine protease); 2.38A {Homo sapiens} SCOP: g.14.1.1 PDB: 1pk2_A* 1tpk_A 10.1002/pro.5560030605
PVCunit1_11 afp11 PAU_02785 3h2t 3h2t_A 96.7 1.5e-05 3.9e-10 80.6 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCunit1_12 afp12 PAU_02786 4acv 4acv_A 20.3 41.0 0.0011 28.3 >4acv_A Antigen B, prophage lambdalm01, antigen B; immune system, surface, phage-related; 2.40A {Listeria monocytogenes} PDB: 4acv_B No DOI found.
PVCunit1_13 PAU_02801 PAU_02787 1ocy 1ocy_A 98.3 6.6e-10 1.8e-14 92.9 >1ocy_A Bacteriophage T4 short tail fibre; structural protein, fibrous protein, LIPO-polysaccharide binding, bacteriophage structural protein; HET: CIT; 1.5A {Bacteriophage T4} SCOP: d.231.1.1 10.1016/S0022-2836(03)00755-1
PVCunit1_14 orf25 PAU_02788 3dzd 3dzd_A 24.8 29 0.00078 28.5 >3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A 10.1016/j.jmb.2008.10.024
PVCunit1_15 PAU_02803 PAU_02789 5ftj 5ftj_A 99.9 1.2e-26 3.2e-31 229.8 >5ftj_A Transitional endoplasmic reticulum ATPase; hydrolase, single-particle, AAA ATPase; HET: ADP OJA; 2.30A {Homo sapiens} PDB: 3cf1_A* 3cf3_A* 3cf2_A* 5ftk_A* 5ftl_A* 5ftm_A* 5ftn_A* 1r7r_A* 5c19_A 5c1b_A* 5c18_A* 3cf0_A* 10.1126/science.aad7974
PVCunit1_16 PAU_02804 PAU_02790 4uhq 4uhq_A 37.5 13 0.00035 29.6 >4uhq_A Large component of pyocin AP41; hydrolase, bacteriocin, DNAse; HET: CIT; 1.50A {Pseudomonas aeruginosa} PDB: 4uhp_A* 10.1016/j.jmb.2015.07.014
PVCunit1_17 hrpN PAU_02791 1yqf 1yqf_A 60.7 3.1 8.3e-05 33.9 >1yqf_A Hypothetical protein LMAJ011689; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.30A {Leishmania major} SCOP: d.25.1.1 No DOI found.
PVCunit1_18 PAU_02806 PAU_02792 1t6u 1t6u_A 24.5 30 0.0008 28.1 >1t6u_A Superoxide dismutase [NI]; nickel, 4-helix bundle, hexamer, nisod, SOD, high resolution, oxidoreductase; 1.30A {Streptomyces coelicolor} SCOP: a.24.22.1 PDB: 1t6q_A 1t6i_A 3g4z_A 3g4x_A 4ncq_A 3g50_A 1q0g_A 1q0f_A 1q0d_A 1q0k_A 1q0m_A 10.1021/bi0496081
PVCunit1_19 PAU_02807 PAU_02793 3kx6 3kx6_A 19.7 44 0.0012 31.3 >3kx6_A Fructose-bisphosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, glycolysis, lyase, STRU genomics; HET: CIT; 2.10A {Babesia bovis} No DOI found.
PVCunit1_20 PAU_02808 PAU_02794 1vyy 1vyy_A 99.9 8.7e-33 2.3e-37 218.9 >1vyy_A Lectin; sugar-binding protein, D-mannose, plant pathogen; HET: BMA MAN; 1.00A {Ralstonia solanacearum} PDB: 1uqx_A* 2chh_A* Key error. ID likely deprecated.
PVCpnf1 PAK_3544 PAK_03203 3eaa 3eaa_A 78.5 0.64 1.7e-05 32.1 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVCpnf2 PAK_3543 PAK_03202 3j9q 3j9q_A 100.0 2.9e-34 7.9e-39 242.5 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCpnf3 PAK_3542 PAK_03201 3j9q 3j9q_A 99.9 8.5e-33 2.3e-37 239.9 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCpnf4 PAK_3541 PAK_03200 3j9q 3j9q_A 99.9 6.9e-27 1.8e-31 200.5 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCpnf5 PAK_3540 PAK_03199 3eaa 3eaa_A 92.6 0.017 4.7e-07 40.1 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVCpnf6 PAK_3539 PAK_03198 4aaa 4aaa_A 73.9 1.1 2.9e-05 27.4 >4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A* No DOI found.
PVCpnf7 PAK_3538 PAK_03197 1pp0 1pp0_A 18.8 47 0.0013 26.7 >1pp0_A Volvatoxin A2; ingot crystal form; 1.42A {Volvariella volvacea} SCOP: d.103.1.1 PDB: 1pp6_A 1vgf_A 1vcy_A 10.1016/j.jmb.2004.08.045
PVCpnf8 PAK_3537 PAK_03196 4uhv 4uhv_A 99.9 9.6e-29 2.6e-33 236.3 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVCpnf9 PAK_3536 PAK_03195 2ia7 2ia7_A 99.7 1.5e-21 3.9e-26 129.9 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCpnf10 PAK_3535 PAK_03194 1ukf 1ukf_A 77.5 0.73 1.9e-05 35.1 >1ukf_A Avirulence protein AVRPPH3; AVRPPHB, hypersensitive response, hydrolase; 1.35A {Pseudomonas syringae PV} SCOP: d.3.1.10 10.1073/pnas.2036536100
PVCpnf11 PAK_3534 PAK_03193 3h2t 3h2t_A 96.8 8.2e-06 2.2e-10 80.7 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCpnf12 PAK_3533 PAK_03192 5cws 5cws_F 33.3 17 0.00045 29.5 >5cws_F Nucleoporin NIC96; nucleocytoplasmic transport, protein transport; 3.77A {Chaetomium thermophilum} 10.1126/science.aac9176
PVCpnf13 PAK_3532 PAK_03191 2xgf 2xgf_A 97.5 1.9e-07 5.2e-12 81.7 >2xgf_A Long tail fiber protein P37; viral protein; 2.20A {Enterobacteria phage T4} 10.1073/pnas.1011218107
PVCpnf14 PAK_3531 PAK_03190 3fx7 3fx7_A 45.3 8.1 0.00022 28.7 >3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} PDB: 2gts_A 10.1093/jb/mvp098
PVCpnf15 PAK_3530 PAK_03189 5ftj 5ftj_A 99.9 1.8e-26 4.9e-31 228.5 >5ftj_A Transitional endoplasmic reticulum ATPase; hydrolase, single-particle, AAA ATPase; HET: ADP OJA; 2.30A {Homo sapiens} PDB: 3cf1_A* 3cf3_A* 3cf2_A* 5ftk_A* 5ftl_A* 5ftm_A* 5ftn_A* 1r7r_A* 5c19_A 5c1b_A* 5c18_A* 3cf0_A* 10.1126/science.aad7974
PVCpnf16 PAK_3529 PAK_03188 3t5s 3t5s_A 61.4 3 7.9e-05 30.2 >3t5s_A Gilaa.00834.A, macrophage migration inhibitory factor; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Giardia lamblia} 10.1007/s10969-013-9155-9
PVCpnf17 PAK_3527 PAK_03187 4ae8 4ae8_A 59.8 3.3 8.8e-05 27.4 >4ae8_A Thioesterase superfamily member 4; hydrolase, hotdog-fold; 1.59A {Homo sapiens} PDB: 4gah_A* 10.1128/MCB.00312-12
PVCpnf18 PAK_3526 PAK_03186 3szp 3szp_A 99.7 2.4e-21 6.3e-26 125.4 >3szp_A Transcriptional regulator, LYSR family; winged helix-turn helix, DNA-binding, transcription factor; 2.20A {Vibrio cholerae} PDB: 3t1b_B 10.1111/j.1365-2958.2011.07919.x
PVCpnf19 PAK_3525 PAK_03185 4mix 4mix_A 100.0 5.6e-35 1.5e-39 251.6 >4mix_A Putative insecticidal toxin; tyrosine glycosylation, UDP-GLCNAC, nucleotide-binding domai rossmann-like, glycosyltransferase; HET: MSE UD1; 1.80A {Photorhabdus asymbiotica subsp} 10.1038/nsmb.2688
PVCpnf20 PAK_3524 PAK_03184 1xju 1xju_A 99.4 4e-17 1.1e-21 98.8 >1xju_A Lysozyme; secreted inactive conformation, hydrolase; 1.07A {Enterobacteria phage P1} SCOP: d.2.1.3 10.1126/science.1105143
PVCpnf21 PAK_3523 PAK_03183 3hdf 3hdf_A 99.8 2.3e-23 6.2e-28 129.0 >3hdf_A Lysozyme; antimicrobial, bacteriolytic enzyme, glycosid hydrolase, late protein; 1.70A {Enterobacteria phage P21} 10.1038/nsmb.1681
PVCpnf22 PAK_3522 PAK_03182 1l8d 1l8d_A 69.1 1.7 4.4e-05 28.9 >1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1 10.1038/nature00922
PVCpnf23 PAK_3521 PAK_03181 3hdf 3hdf_A 100.0 4.5e-43 1.2e-47 234.1 >3hdf_A Lysozyme; antimicrobial, bacteriolytic enzyme, glycosid hydrolase, late protein; 1.70A {Enterobacteria phage P21} 10.1038/nsmb.1681
PVCcif1 PAK_1969 PAK_01787 3jqo 3jqo_B 40.9 11 0.00028 26.9 >3jqo_B TRAO protein; helical outer membrane TM, outer membrane protein complex, T protein; HET: LDA; 2.60A {Escherichia coli} PDB: 3zbi_B 2ofq_A 10.1038/nature08588
PVCcif2 PAK_1970 PAK_01788 3j9q 3j9q_A 100.0 3.6e-34 9.7e-39 242.8 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCcif3 PAK_1971 PAK_01789 3j9q 3j9q_A 99.9 1.8e-31 4.8e-36 234.4 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCcif4 PAK_1972 PAK_01790 3j9q 3j9q_A 99.9 3.8e-27 1e-31 202.0 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCcif5 PAK_1973 PAK_01791 4tv4 4tv4_A 40.1 11 0.0003 27.1 >4tv4_A Uncharacterized protein; unknown function, ssgcid, virulence, structural genomics; 2.10A {Burkholderia pseudomallei} No DOI found.
PVCcif6 PAK_1974 PAK_01792 3rjr 3rjr_A 60.5 3.1 8.4e-05 27.0 >3rjr_A Transforming growth factor beta-1; TGF beta, activation, integrin, cytokine; HET: NAG; 3.05A {Sus scrofa} 10.1038/nature10152
PVCcif7 PAK_1975 PAK_01793 5a3a 5a3a_A 50.8 5.9 0.00016 31.4 >5a3a_A SIR2 family protein; transferase, P-ribosyltransferase, metalloprotein, NAD-depen lipoylation, regulatory enzyme, rossmann fold; 1.54A {Streptococcus pyogenes} PDB: 5a3b_A* 5a3c_A* 10.1016/j.molcel.2015.06.013
PVCcif8 PAK_1976 PAK_01794 4uhv 4uhv_A 99.9 4.5e-28 1.2e-32 231.4 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVCcif9 PAK_1977 PAK_01795 2ia7 2ia7_A 99.7 9.4e-22 2.5e-26 131.7 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCcif10 PAK_1978 PAK_01796 2k4r 2k4r_A 37.3 13 0.00035 21.5 >2k4r_A Neurotrypsin; kringle domain, disulfide-rich protein fold, serine endopeptidase, hydrolase, extracellular proteolysis; NMR {Rattus norvegicus} PDB: 2k51_A 10.1021/bi800555z
PVCcif11 PAK_1979 PAK_01797 3h2t 3h2t_A 96.1 0.00012 3.2e-09 74.0 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCcif12 PAK_1980 PAK_01798 1fho 1fho_A 68.0 1.8 4.8e-05 34.8 >1fho_A UNC-89; pleckstrin homology domain, electrostatics, muscle, signal transduction, signaling protein; NMR {Caenorhabditis elegans} SCOP: b.55.1.1 10.1016/S0969-2126(00)00509-8
PVCcif13 PAK_1981 PAK_01799 1ocy 1ocy_A 98.3 5.1e-10 1.4e-14 89.6 >1ocy_A Bacteriophage T4 short tail fibre; structural protein, fibrous protein, LIPO-polysaccharide binding, bacteriophage structural protein; HET: CIT; 1.5A {Bacteriophage T4} SCOP: d.231.1.1 10.1016/S0022-2836(03)00755-1
PVCcif14 PAK_1982 PAK_01800 1tuz 1tuz_A 21.4 38.0 0.001 26.1 >1tuz_A Diacylglycerol kinase alpha; transferase, HR532, nesgc, structural genomics, PSI, protein structure initiative; NMR {Homo sapiens} SCOP: a.39.1.7 No DOI found.
PVCcif15 PAK_1983 PAK_01801 5ftj 5ftj_A 99.8 2.1e-23 5.5e-28 206.7 >5ftj_A Transitional endoplasmic reticulum ATPase; hydrolase, single-particle, AAA ATPase; HET: ADP OJA; 2.30A {Homo sapiens} PDB: 3cf1_A* 3cf3_A* 3cf2_A* 5ftk_A* 5ftl_A* 5ftm_A* 5ftn_A* 1r7r_A* 5c19_A 5c1b_A* 5c18_A* 3cf0_A* 10.1126/science.aad7974
PVCcif16 PAK_1984 PAK_01802 3fxd 3fxd_B 34.1 16 0.00043 28.1 >3fxd_B Protein ICMR; helix bundle, helix-turn-helix, unknown function; 2.10A {Legionella pneumophila subsp} PDB: 3fxe_B 10.1016/j.str.2009.02.011
PVCcif17 PAK_1985 PAK_01803 4fbj 4fbj_A 100.0 2.4e-91 6.3e-96 618.6 >4fbj_A CIF, hypothetical protein; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Photorhabdus luminescens subsp} PDB: 3gqj_A No DOI found.
PVCcif18 PAK_1986 PAK_01804 3r2n 3r2n_A 31.0 19 0.00052 26.9 >3r2n_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.30A {Mycobacterium leprae} 10.1016/j.tube.2014.12.003
PVCcif19 PAK_1987 PAK_01805 5ewy 5ewy_A 97.3 6.1e-07 1.6e-11 74.4 >5ewy_A Putative ADP-ribosyltransferase scabin; inhibitor, transferase-transferase inhibitor CO; HET: 5TQ; 1.40A {Streptomyces scabiei 87} PDB: 5ewk_A* 10.1074/jbc.M115.707653
PVCcif20 PAK_1988 PAK_01806 2hxj 2hxj_A 74.1 1.0 2.8e-05 35.9 >2hxj_A Hypothetical protein; APC83807, structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.21A {Neisseria meningitidis MC58} SCOP: a.136.1.1 PDB: 3mw6_A Key error. ID likely deprecated.
PVClumt1 PAK_2216 PAK_02014 3eaa 3eaa_A 69.3 1.6 4.3e-05 30.1 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVClumt2 PAK_2215 PAK_02013 3j9q 3j9q_A 99.6 1.3e-19 3.6e-24 154.2 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClumt3 PAK_2214 PAK_02012 3j9q 3j9q_A 98.2 1.4e-09 3.9e-14 75.6 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClumt4 PAK_2213 PAK_02011 3j9q 3j9q_A 99.9 7e-29 1.9e-33 212.0 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClumt5 PAK_2212 PAK_02010 3eaa 3eaa_A 72.5 1.2 3.3e-05 30.9 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVClumt6 PAK_2211 PAK_02009 1use 1use_A 68.7 1.7 4.5e-05 24.0 >1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A 10.1073/pnas.0403069101
PVClumt7 PAK_2210 PAK_02008 4v2x 4v2x_A 30.3 20.0 0.00054 30.8 >4v2x_A Endo-beta-1,4-glucanase (cellulase B); hydrolase, TRI-modular; 1.64A {Bacillus halodurans} 10.1074/jbc.M115.637827
PVClumt8 PAK_2209 PAK_02007 2p5z 2p5z_X 99.7 1.4e-21 3.8e-26 177.2 >2p5z_X Type VI secretion system component; structural genomics, unknown function, PSI-2, protein struct initiative; 2.60A {Escherichia coli O6} SCOP: b.40.8.1 b.106.1.1 b.106.1.1 10.1073/pnas.0813360106
PVClumt9 PAK_2208 PAK_02006 2ia7 2ia7_A 99.7 6.6e-22 1.7e-26 132.6 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVClumt10 PAK_2207 PAK_02005 1txy 1txy_A 55.7 4.3 0.00012 24.5 >1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A 10.1016/j.str.2004.09.004
PVClumt11 PAK_2206 PAK_02004 2kcp 2kcp_A 37.9 13 0.00034 29.9 >2kcp_A 30S ribosomal protein S8E; RPS8E, beta, NESG, ribonucleoprotein, structural genomics, PSI-2; NMR {Methanothermobacter thermautotrophicusstr} PDB: 2kcy_A No DOI found.
PVClumt12 PAK_2205 PAK_02003 3h2t 3h2t_A 96.2 8e-05 2.1e-09 63.5 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVClumt13 PAK_2204 PAK_02002 1yo5 1yo5_C 39.0 12 0.00032 32.1 >1yo5_C SAM pointed domain containing ETS transcription factor; protein-DNA complex, double helix, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.4.5.21 10.1021/bi047352t
PVClumt14 PAK_2203 PAK_02001 1v1h 1v1h_A 95.3 0.0009 2.4e-08 49.5 >1v1h_A Fibritin, fiber protein; chimera; 1.9A {Human adenovirus type 2} SCOP: b.83.1.1 h.1.17.1 PDB: 1v1i_A 10.1016/j.jmb.2004.07.008
PVClumt15 PAK_2202 PAK_02000 1osn 1osn_A 25.9 27 0.00073 33.2 >1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1 10.1074/jbc.M302025200
PVClumt16 PAK_2201 PAK_01999 4uid 4uid_A 64.8 2.3 6.2e-05 31.5 >4uid_A S-layer SBSC, surface layer protein; sugar binding protein, G. stearothermophilus; 2.80A {Geobacillus stearothermophilus} No DOI found.
PVClumt17 PAK_2200 PAK_01998 3k8p 3k8p_C 34.7 15.0 0.00041 34.1 >3k8p_C DSL1, KLLA0C02695P; intracellular trafficking, DSL1 complex, multisubunit tethering complex, snare proteins; 2.60A {Kluyveromyces lactis} 10.1016/j.cell.2009.11.002
PVClumt18 PAK_2199 PAK_01997 5ftj 5ftj_A 99.9 1.6e-26 4.2e-31 229.2 >5ftj_A Transitional endoplasmic reticulum ATPase; hydrolase, single-particle, AAA ATPase; HET: ADP OJA; 2.30A {Homo sapiens} PDB: 3cf1_A* 3cf3_A* 3cf2_A* 5ftk_A* 5ftl_A* 5ftm_A* 5ftn_A* 1r7r_A* 5c19_A 5c1b_A* 5c18_A* 3cf0_A* 10.1126/science.aad7974
PVClumt19 PAK_2198 PAK_01996 3lfh 3lfh_A 39.5 11 0.00031 28.9 >3lfh_A Manxa, phosphotransferase system, mannose/fructose-speci component IIA; PTS; 1.80A {Thermoanaerobacter tengcongensis} No DOI found.
PVClumt20 PAK_2197 PAK_01995 1wrd 1wrd_A 43.2 9.2 0.00025 32.8 >1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1 PDB: 2n2n_A 10.1016/j.febslet.2005.08.076
PVClumt21 PAK_2195 PAK_01994 4mix 4mix_A 100.0 2.5e-43 6.7e-48 346.1 >4mix_A Putative insecticidal toxin; tyrosine glycosylation, UDP-GLCNAC, nucleotide-binding domai rossmann-like, glycosyltransferase; HET: MSE UD1; 1.80A {Photorhabdus asymbiotica subsp} 10.1038/nsmb.2688
PVClopt1 PAK_2092 PAK_01896 3eaa 3eaa_A 82.2 0.39 1e-05 33.1 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVClopt2 PAK_2091 PAK_01895 3j9q 3j9q_A 100.0 2.4e-35 6.4e-40 248.6 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClopt3 PAK_2090 PAK_01894 3j9q 3j9q_A 99.9 1.7e-29 4.6e-34 215.9 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClopt4 PAK_2089 PAK_01893 3eaa 3eaa_A 64.9 2.3 6.1e-05 29.4 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVClopt5 PAK_2088 PAK_01892 1qey 1qey_A 27.7 24 0.00064 18.3 >1qey_A MNT-C, protein (regulatory protein MNT); oligomerization, transcriptional control, P22 MNT repressor, gene regulation; NMR {Enterobacteria phage P22} SCOP: h.2.1.1 10.1038/11531
PVClopt6 PAK_2087 PAK_01891 3zo0 3zo0_A 61.8 2.9 7.7e-05 27.8 >3zo0_A IG gamma-2A chain C region, A allele; immune system-ligase complex; HET: NAG BMA MAN GAL FUC; 1.99A {Mus musculus} PDB: 2rgs_A* 10.1073/pnas.0800159105
PVClopt7 PAK_2086 PAK_01890 4uhv 4uhv_A 99.9 8.2e-29 2.2e-33 236.5 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVClopt8 PAK_2085 PAK_01889 2ia7 2ia7_A 99.8 2.2e-23 5.8e-28 137.0 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVClopt9 PAK_2084 PAK_01888 3ojo 3ojo_A 69.6 1.6 4.2e-05 34.0 >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* 10.1074/jbc.M110.216002
PVClopt10 PAK_2083 PAK_01887 3h2t 3h2t_A 96.8 9.5e-06 2.5e-10 85.1 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVClopt11 PAK_2082 PAK_01886 1ip9 1ip9_A 49.1 6.5 0.00017 31.0 >1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A 10.1093/emboj/20.15.3947
PVClopt12 PAK_2081 PAK_01885 1nvp 1nvp_B 34.5 16 0.00042 26.7 >1nvp_B Transcription initiation factor IIA alpha chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: a.32.1.1 PDB: 5fur_B* 10.1016/S0022-2836(03)00887-8
PVClopt13 PAK_2080 PAK_01884 5ftj 5ftj_A 99.8 2.1e-24 5.5e-29 213.7 >5ftj_A Transitional endoplasmic reticulum ATPase; hydrolase, single-particle, AAA ATPase; HET: ADP OJA; 2.30A {Homo sapiens} PDB: 3cf1_A* 3cf3_A* 3cf2_A* 5ftk_A* 5ftl_A* 5ftm_A* 5ftn_A* 1r7r_A* 5c19_A 5c1b_A* 5c18_A* 3cf0_A* 10.1126/science.aad7974
PVClopt14 PAK_2079 PAK_01883 5ig4 5ig4_A 19.2 46.0 0.0012 22.3 >5ig4_A Predicted protein; Ca2+/CAM-dependent kinase, SEA anemone, closed-ring, transfe; HET: GOL; 2.35A {Nematostella vectensis} 10.7554/eLife.13405
PVClopt15 PAK_2078 PAK_01882 2l1n 2l1n_A 52.8 5.2 0.00014 27.8 >2l1n_A Uncharacterized protein; DUF1823, hypothetical protein, cyanobacteria, structural GEN PSI-biology, protein structure initiative; NMR {Synechococcus elongatus} No DOI found.
PVClopt16 PAK_2077 PAK_01881 1ukf 1ukf_A 99.8 2.5e-25 6.6e-30 187.7 >1ukf_A Avirulence protein AVRPPH3; AVRPPHB, hypersensitive response, hydrolase; 1.35A {Pseudomonas syringae PV} SCOP: d.3.1.10 10.1073/pnas.2036536100
PVClopt17 PAK_2075 PAK_01880 1e1h 1e1h_A 92.3 0.02 5.4e-07 60.8 >1e1h_A BONT/A LC, botulinum neurotoxin type A light chain; Zn-endopeptidase, complex, substrate bound, inhibitor bound, hydrolase; 1.80A {Clostridium botulinum} SCOP: d.92.1.7 10.1073/pnas.0400584101
PVCunit1_1 PAK_2876 PAK_02606 3eaa 3eaa_A 73.2 1.1 3.1e-05 30.8 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVCunit1_2 PAK_2877 PAK_02607 3j9q 3j9q_A 100.0 3.7e-34 1e-38 242.1 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit1_3 PAK_2878 PAK_02608 3j9q 3j9q_A 100.0 6.7e-34 1.8e-38 247.8 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit1_4 PAK_2879 PAK_02609 3j9q 3j9q_A 99.9 6e-30 1.6e-34 219.4 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit1_5 PAK_2880 PAK_02610 4tv4 4tv4_A 63.0 2.6 7e-05 30.4 >4tv4_A Uncharacterized protein; unknown function, ssgcid, virulence, structural genomics; 2.10A {Burkholderia pseudomallei} No DOI found.
PVCunit1_6 PAK_2881 PAK_02611 4yci 4yci_A 66.4 2.0 5.4e-05 26.8 >4yci_A Bone morphogenetic protein 9 growth factor domain; Pro-BMP complex, transforming growth factor-beta cytokine; HET: NAG; 3.25A {Mus musculus} PDB: 4ycg_A* 10.1073/pnas.1501303112
PVCunit1_7 PAK_2882 PAK_02612 5a3a 5a3a_A 54.5 4.7 0.00012 32.0 >5a3a_A SIR2 family protein; transferase, P-ribosyltransferase, metalloprotein, NAD-depen lipoylation, regulatory enzyme, rossmann fold; 1.54A {Streptococcus pyogenes} PDB: 5a3b_A* 5a3c_A* 10.1016/j.molcel.2015.06.013
PVCunit1_8 PAK_2883 PAK_02613 4uhv 4uhv_A 99.9 2.4e-30 6.4e-35 247.1 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVCunit1_9 PAK_2884 PAK_02614 2ia7 2ia7_A 99.7 9.8e-22 2.6e-26 131.7 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCunit1_10 PAK_2885 PAK_02615 1ngv 1ngv_A 43.2 9.2 0.00025 31.0 >1ngv_A Amyloid beta precursor protein-binding protein 1; signaling protein; 2.60A {Homo sapiens} PDB: 3gzn_A* 1yov_A 2nvu_A* 1r4m_A 1r4n_A* 1tt5_A 3dbh_A 3dbl_A 3dbr_A Key error. ID likely deprecated.
PVCunit1_11 PAK_2886 PAK_02616 3h2t 3h2t_A 96.6 1.8e-05 4.9e-10 79.9 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCunit1_12 PAK_2887 PAK_02617 1s5u 1s5u_A 35.2 15 0.0004 28.5 >1s5u_A Protein YBGC; structural genomics, hypothetical protein, thioesterase fold, PSI, protein structure initiative; 1.70A {Escherichia coli} SCOP: d.38.1.1 No DOI found.
PVCunit1_13 PAK_2888 PAK_02618 3izo 3izo_F 98.9 5.5e-13 1.5e-17 133.9 >3izo_F Fiber; pentameric penton base, trimeri viral protein; 3.60A {Human adenovirus 5} 10.1016/j.jmb.2010.11.043
PVCunit1_14 PAK_2889 PAK_02619 1ojh 1ojh_A 20.8 40 0.0011 26.2 >1ojh_A NBLA; degradation protein, phycobilisome degradation, protein BIND; HET: MSE; 1.80A {Anabaena SP} SCOP: a.214.1.1 10.1074/jbc.M507243200
PVCunit1_15 PAK_2890 PAK_02620 5ftj 5ftj_A 99.9 2.6e-26 7e-31 227.3 >5ftj_A Transitional endoplasmic reticulum ATPase; hydrolase, single-particle, AAA ATPase; HET: ADP OJA; 2.30A {Homo sapiens} PDB: 3cf1_A* 3cf3_A* 3cf2_A* 5ftk_A* 5ftl_A* 5ftm_A* 5ftn_A* 1r7r_A* 5c19_A 5c1b_A* 5c18_A* 3cf0_A* 10.1126/science.aad7974
PVCunit1_16 PAK_2891 PAK_02621 5fvk 5fvk_C 25.4 28.0 0.00076 20.8 >5fvk_C VFA1, VPS4-associated protein 1; hydrolase, MIT domain, yeast, ATPase; 1.66A {Saccharomyces cerevisiae} PDB: 4niq_C 10.1016/j.jmb.2016.04.007
PVCunit1_17 PAK_2892 PAK_02622 1cii 1cii_A 63.2 2.6 6.9e-05 41.7 >1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1 10.1038/385461a0
PVCunit1_18 PAK_2893 PAK_02623 1t6u 1t6u_A 24.3 30 0.00081 28.0 >1t6u_A Superoxide dismutase [NI]; nickel, 4-helix bundle, hexamer, nisod, SOD, high resolution, oxidoreductase; 1.30A {Streptomyces coelicolor} SCOP: a.24.22.1 PDB: 1t6q_A 1t6i_A 3g4z_A 3g4x_A 4ncq_A 3g50_A 1q0g_A 1q0f_A 1q0d_A 1q0k_A 1q0m_A 10.1021/bi0496081
PVCunit1_19 PAK_2894 PAK_02624 3fnb 3fnb_A 65.1 2.3 6e-05 33.6 >3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix bundle, structural genomics protein structure initiative; HET: PGE; 2.12A {Streptococcus mutans} No DOI found.
PVCunit1_20 PAK_2895 PAK_02625 1ocy 1ocy_A 97.2 1.6e-06 4.1e-11 65.1 >1ocy_A Bacteriophage T4 short tail fibre; structural protein, fibrous protein, LIPO-polysaccharide binding, bacteriophage structural protein; HET: CIT; 1.5A {Bacteriophage T4} SCOP: d.231.1.1 10.1016/S0022-2836(03)00755-1
PVCunit1_21 PAK_2896 PAK_02626 1vyy 1vyy_A 100.0 5.6e-35 1.5e-39 231.2 >1vyy_A Lectin; sugar-binding protein, D-mannose, plant pathogen; HET: BMA MAN; 1.00A {Ralstonia solanacearum} PDB: 1uqx_A* 2chh_A* Key error. ID likely deprecated.
PVCcif1 plu2531 PLT_02568 3jqo 3jqo_B 47.2 7.3 0.00019 27.7 >3jqo_B TRAO protein; helical outer membrane TM, outer membrane protein complex, T protein; HET: LDA; 2.60A {Escherichia coli} PDB: 3zbi_B 2ofq_A 10.1038/nature08588
PVCcif2 plu2530 PLT_02567 3j9q 3j9q_A 99.9 1.5e-31 4e-36 226.6 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCcif3 plu2529 PLT_02566 3j9q 3j9q_A 100.0 3.7e-36 9.8e-41 262.4 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCcif4 plu2528 PLT_02565 3j9q 3j9q_A 99.9 2.1e-28 5.7e-33 209.6 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCcif5 plu2527 PLT_02564 4tv4 4tv4_A 68.0 1.8 4.8e-05 31.3 >4tv4_A Uncharacterized protein; unknown function, ssgcid, virulence, structural genomics; 2.10A {Burkholderia pseudomallei} No DOI found.
PVCcif6 plu2526 PLT_02563 1use 1use_A 63.2 2.6 6.9e-05 23.2 >1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A 10.1073/pnas.0403069101
PVCcif7 plu2525 PLT_02562 4bs6 4bs6_A 22.6 35 0.00092 24.5 >4bs6_A Cathepsin S; hydrolase, cysteine protease, covalent ligand; HET: JG7; 1.20A {Mus musculus} PDB: 4bpv_A* 4bqv_A* 4bs5_A* 4bsq_A* 4mzo_A* 4mzs_A* 4p6e_A* 2h7j_A* 2f1g_A* 2hh5_B* 2hhn_A* 2hxz_A* 2op3_A* 1ms6_A* 2r9m_A* 2r9n_A* 2r9o_A* 3n3g_A* 3n4c_A* 4p6g_A* 3ovx_A* 2frq_A* 2fra_A* 2fq9_A* 2ft2_A* 2fud_A* 2g7y_A* 1nqc_A* 1npz_A* 2g6d_A* ... No DOI found.
PVCcif8 plu2524 PLT_02561 4uhv 4uhv_A 99.9 3.2e-27 8.6e-32 225.6 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVCcif9 plu2523 PLT_02560 2ia7 2ia7_A 99.8 5.3e-25 1.4e-29 146.2 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCcif10 plu2522 PLT_02559 4jiw 4jiw_D 77.4 0.74 2e-05 28.8 >4jiw_D C1882, putative uncharacterized protein; PAAR-repeat motif, membrane piercing, type VI secretion SYST spike, cell puncturing device, beta-helix; 3.40A {Escherichia coli} 10.1038/nature12453
PVCcif11 plu2521 PLT_02558 3h2t 3h2t_A 96.6 2.5e-05 6.7e-10 79.0 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCcif12 plu2520 PLT_02557 1fho 1fho_A 64.0 2.4 6.5e-05 33.9 >1fho_A UNC-89; pleckstrin homology domain, electrostatics, muscle, signal transduction, signaling protein; NMR {Caenorhabditis elegans} SCOP: b.55.1.1 10.1016/S0969-2126(00)00509-8
PVCcif13 plu2519 PLT_02556 2xgf 2xgf_A 96.6 1.8e-05 4.9e-10 69.1 >2xgf_A Long tail fiber protein P37; viral protein; 2.20A {Enterobacteria phage T4} 10.1073/pnas.1011218107
PVCcif14 plu2518 PLT_02555 3b1j 3b1j_C 41.9 9.9 0.00027 26.0 >3b1j_C CP12; alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_C* 10.1016/j.str.2011.08.016
PVCcif15 plu2517 PLT_02554 5ftj 5ftj_A 99.8 1.1e-25 2.8e-30 223.0 >5ftj_A Transitional endoplasmic reticulum ATPase; hydrolase, single-particle, AAA ATPase; HET: ADP OJA; 2.30A {Homo sapiens} PDB: 3cf1_A* 3cf3_A* 3cf2_A* 5ftk_A* 5ftl_A* 5ftm_A* 5ftn_A* 1r7r_A* 5c19_A 5c1b_A* 5c18_A* 3cf0_A* 10.1126/science.aad7974
PVCcif16 plu2516 PLT_02553 1u1j 1u1j_A 39.0 12 0.00032 35.6 >1u1j_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; methionine, synthase, methyltetrahydrofolate; HET: C2F; 2.40A {Arabidopsis thaliana} SCOP: c.1.22.2 c.1.22.2 PDB: 1u1h_A* 1u1u_A 1u22_A* 10.1074/jbc.C400325200
PVCcif17 plu2515 PLT_02552 4fbj 4fbj_A 100.0 3e-109 7e-114 735.1 >4fbj_A CIF, hypothetical protein; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Photorhabdus luminescens subsp} PDB: 3gqj_A No DOI found.
PVCcif18 plu2514 PLT_02551 3wmi 3wmi_B 20.6 40 0.0011 24.0 >3wmi_B EIAV GP45 wild type; alpha-helix, virus fusion, viral protein; 1.90A {Equine} PDB: 3wmj_B No DOI found.
PVClopt1 plu2385 PLT_02424 3eaa 3eaa_A 82.7 0.36 9.5e-06 33.4 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVClopt2 plu2386 PLT_02425 3j9q 3j9q_A 99.9 4.1e-33 1.1e-37 235.7 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClopt3 plu2387 PLT_02426 3j9q 3j9q_A 100.0 4e-34 1.1e-38 247.2 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClopt4 plu2388 PLT_02427 3j9q 3j9q_A 99.9 5e-31 1.3e-35 225.1 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVClopt5 plu2389 PLT_02428 4tv4 4tv4_A 66.1 2.1 5.6e-05 30.9 >4tv4_A Uncharacterized protein; unknown function, ssgcid, virulence, structural genomics; 2.10A {Burkholderia pseudomallei} No DOI found.
PVClopt6 plu2390 PLT_02429 4zmk 4zmk_A 51.9 5.5 0.00015 24.7 >4zmk_A Telomere length regulator TAZ1; dimerization domain, fission yeast, DNA binding PR; 1.50A {Schizosaccharomyces pombe} 10.1038/cr.2015.76
PVClopt7 plu2391 PLT_02430 5a3a 5a3a_A 48.7 6.6 0.00018 31.1 >5a3a_A SIR2 family protein; transferase, P-ribosyltransferase, metalloprotein, NAD-depen lipoylation, regulatory enzyme, rossmann fold; 1.54A {Streptococcus pyogenes} PDB: 5a3b_A* 5a3c_A* 10.1016/j.molcel.2015.06.013
PVClopt8 plu2392 PLT_02431 4uhv 4uhv_A 99.9 3.7e-31 1e-35 252.7 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVClopt9 plu2393 PLT_02432 2ia7 2ia7_A 99.8 1e-23 2.7e-28 140.3 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVClopt10 plu2394 PLT_02433 4jiw 4jiw_D 61.0 3.0 8.1e-05 26.0 >4jiw_D C1882, putative uncharacterized protein; PAAR-repeat motif, membrane piercing, type VI secretion SYST spike, cell puncturing device, beta-helix; 3.40A {Escherichia coli} 10.1038/nature12453
PVClopt11 plu2395 PLT_02434 3h2t 3h2t_A 97.5 2.7e-07 7.1e-12 96.6 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVClopt12 plu2396 PLT_02435 1pqx 1pqx_A 49.6 6.3 0.00017 33.3 >1pqx_A Conserved hypothetical protein; ZR18,structure, autostructure,spins,autoassign, northeast structural genomics consortium; NMR {Staphylococcus aureus subsp} SCOP: d.267.1.1 PDB: 2ffm_A 2m6q_A 2m8w_A No DOI found.
PVClopt13 plu2397 PLT_02436 2j9w 2j9w_A 29.4 21 0.00057 29.3 >2j9w_A VPS28, VPS28-PROV protein; NZF finger, HIV budding, protein transport; 1.30A {Xenopus laevis} 10.1038/sj.emboj.7601501
PVClopt14 plu2398 PLT_02437 5ftj 5ftj_A 99.8 1.3e-25 3.5e-30 222.3 >5ftj_A Transitional endoplasmic reticulum ATPase; hydrolase, single-particle, AAA ATPase; HET: ADP OJA; 2.30A {Homo sapiens} PDB: 3cf1_A* 3cf3_A* 3cf2_A* 5ftk_A* 5ftl_A* 5ftm_A* 5ftn_A* 1r7r_A* 5c19_A 5c1b_A* 5c18_A* 3cf0_A* 10.1126/science.aad7974
PVClopt15 plu2399 PLT_02438 3b33 3b33_A 21.2 39 0.001 18.4 >3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633} No DOI found.
PVClopt16 plu2400 PLT_02439 2ebf 2ebf_X 100.0 1.5e-85 4.1e-90 674.4 >2ebf_X Dermonecrotic toxin; pasteurella multocida toxin, trojan horse-like fold; HET: TRE; 1.90A {Pasteurella multocida} SCOP: a.296.1.1 c.150.1.2 d.3.1.17 PDB: 2ec5_A 2ebh_X* 10.1073/pnas.0608197104
PVClopt17 plu2401 PLT_02440 1ukf 1ukf_A 99.8 1.6e-25 4.2e-30 188.8 >1ukf_A Avirulence protein AVRPPH3; AVRPPHB, hypersensitive response, hydrolase; 1.35A {Pseudomonas syringae PV} SCOP: d.3.1.10 10.1073/pnas.2036536100
PVCunit1_1 plu1730 PLT_01758 3eaa 3eaa_A 77.0 0.77 2.1e-05 31.7 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVCunit1_2 plu1729 PLT_01757 3j9q 3j9q_A 100.0 2.5e-35 6.7e-40 248.9 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit1_3 plu1728 PLT_01756 3j9q 3j9q_A 100.0 8.4e-34 2.2e-38 247.3 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit1_4 plu1727 PLT_01755 3j9q 3j9q_A 99.9 2.5e-29 6.6e-34 215.0 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit1_5 plu1726 PLT_01754 3eaa 3eaa_A 82.2 0.38 1e-05 33.3 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVCunit1_6 plu1725 PLT_01753 1use 1use_A 58.6 3.6 9.6e-05 22.6 >1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A 10.1073/pnas.0403069101
PVCunit1_7 plu1724 PLT_01752 1avo 1avo_B 32.8 17 0.00046 27.2 >1avo_B 11S regulator; proteasome activator, cell adhesion, interferon induction; 2.80A {Homo sapiens} SCOP: a.24.8.1 10.1038/37670
PVCunit1_8 plu1723 PLT_01751 4uhv 4uhv_A 99.9 3.9e-29 1e-33 238.8 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVCunit1_9 plu1722 PLT_01750 2ia7 2ia7_A 99.2 2.9e-15 7.7e-20 106.9 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCunit1_10 plu1721 PLT_01749 2fwm 2fwm_X 33.8 16 0.00043 23.1 >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossmann fold, chorismate metabolism, short-CH oxidoreductase, tetramer; 2.00A {Escherichia coli} 10.1107/S0907444906015824
PVCunit1_11 plu1720 PLT_01748 3h2t 3h2t_A 96.0 0.00015 4e-09 73.4 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCunit1_12 plu1719 PLT_01747 1pqx 1pqx_A 53.4 5.0 0.00013 33.8 >1pqx_A Conserved hypothetical protein; ZR18,structure, autostructure,spins,autoassign, northeast structural genomics consortium; NMR {Staphylococcus aureus subsp} SCOP: d.267.1.1 PDB: 2ffm_A 2m6q_A 2m8w_A No DOI found.
PVCunit1_13 plu1718 PLT_01746 1ocy 1ocy_A 98.0 9.4e-09 2.5e-13 86.7 >1ocy_A Bacteriophage T4 short tail fibre; structural protein, fibrous protein, LIPO-polysaccharide binding, bacteriophage structural protein; HET: CIT; 1.5A {Bacteriophage T4} SCOP: d.231.1.1 10.1016/S0022-2836(03)00755-1
PVCunit1_14 plu1717 PLT_01745 1elk 1elk_A 13.3 80.0 0.0021 25.1 >1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2 10.1021/bi0013546
PVCunit1_15 plu1716 PLT_01744 5ftj 5ftj_A 99.8 3.2e-24 8.6e-29 212.4 >5ftj_A Transitional endoplasmic reticulum ATPase; hydrolase, single-particle, AAA ATPase; HET: ADP OJA; 2.30A {Homo sapiens} PDB: 3cf1_A* 3cf3_A* 3cf2_A* 5ftk_A* 5ftl_A* 5ftm_A* 5ftn_A* 1r7r_A* 5c19_A 5c1b_A* 5c18_A* 3cf0_A* 10.1126/science.aad7974
PVCunit1_16 plu1715 PLT_01743 1vwx 1vwx_f 22.5 35 0.00093 27.1 >1vwx_f Ribosomal protein EL33; mammalian, ribosome; 3.40A {Sus scrofa} PDB: 1vwz_f 1vx1_f 1vx4_f 3j3b_f 4cxd_f 4upx_f 4uq1_f 4w20_f 4w22_f 4w25_f 4w27_f Key error. ID likely deprecated.
PVCunit1_17 plu1714 PLT_01742 1eb6 1eb6_A 83.0 0.34 9.1e-06 31.6 >1eb6_A Neutral protease II; metalloproteinase, zinc, hydrolase; 1.0A {Aspergillus oryzae} SCOP: d.92.1.12 10.1107/S090744490101335X
PVCunit1_18 plu1713 PLT_01741 2hwn 2hwn_E 27.0 25 0.00068 21.9 >2hwn_E A kinase binding peptide; PKA, AKAP, dimerization/docking, D/D, regulatory subunit, TR; 1.60A {Rattus norvegicus} 10.1016/j.molcel.2006.09.015
PVCunit1_19 plu1712 PLT_01740 1yrt 1yrt_A 98.1 2.7e-09 7.3e-14 98.9 >1yrt_A Bifunctional hemolysin-adenylate cyclase; CYAA, layse, toxin; 2.10A {Bordetella pertussis} PDB: 1yru_A 1zot_A* 2col_A 10.1038/sj.emboj.7600800
PVCunit2_1 plu1708 PLT_01736 3eaa 3eaa_A 69.5 1.6 4.2e-05 30.1 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVCunit2_2 plu1707 PLT_01735 3j9q 3j9q_A 100.0 1.2e-33 3.2e-38 239.0 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit2_3 plu1706 PLT_01734 3j9q 3j9q_A 100.0 1.6e-34 4.3e-39 253.7 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit2_4 plu1705 PLT_01733 3j9q 3j9q_A 99.9 7e-30 1.9e-34 219.0 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit2_5 plu1704 PLT_01732 4etv 4etv_A 39.0 12 0.00032 27.6 >4etv_A Ryanodine receptor 2; phosphorylation, cardiac, metal transport; 1.65A {Mus musculus} 10.1016/j.str.2012.04.015
PVCunit2_6 plu1703 PLT_01731 4e71 4e71_A 48.5 6.7 0.00018 23.9 >4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens} No DOI found.
PVCunit2_7 plu1702 PLT_01730 5a3a 5a3a_A 64.0 2.5 6.6e-05 33.5 >5a3a_A SIR2 family protein; transferase, P-ribosyltransferase, metalloprotein, NAD-depen lipoylation, regulatory enzyme, rossmann fold; 1.54A {Streptococcus pyogenes} PDB: 5a3b_A* 5a3c_A* 10.1016/j.molcel.2015.06.013
PVCunit2_8 plu1701 PLT_01729 4uhv 4uhv_A 99.9 2.2e-30 5.8e-35 247.3 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVCunit2_9 plu1700 PLT_01728 2ia7 2ia7_A 99.7 1.1e-22 2.9e-27 138.2 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCunit2_10 plu1699 PLT_01727 2k4r 2k4r_A 34.3 16 0.00042 21.2 >2k4r_A Neurotrypsin; kringle domain, disulfide-rich protein fold, serine endopeptidase, hydrolase, extracellular proteolysis; NMR {Rattus norvegicus} PDB: 2k51_A 10.1021/bi800555z
PVCunit2_11 plu1698 PLT_01726 3h2t 3h2t_A 96.8 7.8e-06 2.1e-10 82.6 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCunit2_12 plu1697 PLT_01725 1h9i 1h9i_I 24.4 30.0 0.00081 27.0 >1h9i_I EETI-II, trypsin inhibitor II; hydrolase/inhibitor, complex (serine protease/inhibitor), squash inhibitor, cystine knot; 1.9A {Ecballium elaterium} SCOP: g.3.2.1 10.1107/S0907444905021207
PVCunit2_13 plu1696 PLT_01724 3izo 3izo_F 98.4 3.2e-10 8.5e-15 108.7 >3izo_F Fiber; pentameric penton base, trimeri viral protein; 3.60A {Human adenovirus 5} 10.1016/j.jmb.2010.11.043
PVCunit2_14 plu1695 PLT_01723 4u7b 4u7b_A 99.8 2e-23 5.3e-28 167.0 >4u7b_A Mariner MOS1 transposase; transposon synaptic complex, helix-turn-helix, like fold, DNA transposition, hydrolase-DNA complex; HET: DNA; 3.09A {Drosophila mauritiana} PDB: 4r79_A 3hos_A* 3hot_A 10.1093/nar/gkv096
PVCunit2_15 plu1694 PLT_01722 2mdp 2mdp_A 23.8 32.0 0.00085 28.7 >2mdp_A Gene 1.2 protein; dntpase inhibitor, viral protein; NMR {Enterobacteria phage T7} No DOI found.
PVCunit2_16 plu1693 PLT_01721 5ftj 5ftj_A 99.8 6.2e-24 1.7e-28 210.2 >5ftj_A Transitional endoplasmic reticulum ATPase; hydrolase, single-particle, AAA ATPase; HET: ADP OJA; 2.30A {Homo sapiens} PDB: 3cf1_A* 3cf3_A* 3cf2_A* 5ftk_A* 5ftl_A* 5ftm_A* 5ftn_A* 1r7r_A* 5c19_A 5c1b_A* 5c18_A* 3cf0_A* 10.1126/science.aad7974
PVCunit2_17 plu1692 PLT_01720 3ggm 3ggm_A 54.2 4.8 0.00013 26.2 >3ggm_A Uncharacterized protein BT9727_2919; bacillus cereus group., structural genomics, PSI-2, protein structure initiative; 2.00A {Bacillus thuringiensis serovarkonkukian} No DOI found.
PVCunit2_18 plu1691 PLT_01719 3u8p 3u8p_A 21.9 36.0 0.00097 31.6 >3u8p_A Cytochrome B562 integral fusion with enhanced GRE fluorescent protein; directed evolution, domain insertion, energy transfer, fluor quenching; HET: CRO HEM; 2.75A {Aequorea victoria} 10.1021/ja301987h
PVCunit2_19 plu1690 PLT_01718 2rio 2rio_A 79.3 0.58 1.6e-05 29.0 >2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* 10.1016/j.cell.2007.10.057
PVCunit2_20 plu1689 PLT_01717 3dxo 3dxo_A 39.1 12 0.00032 25.3 >3dxo_A Uncharacterized snoal-like protein; putative isomerase of the snoal-like family; HET: MSE PGE; 2.70A {Agrobacterium tumefaciens str} SCOP: d.17.4.19 No DOI found.
PVCunit3_1 plu1689 PLT_01716 1l4i 1l4i_A 69.3 1.6 4.3e-05 30.5 >1l4i_A SFAE protein; periplasmic chaperone, immunoglobulin fold; 2.20A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 10.1107/S0907444902005954
PVCunit3_2 plu1688 PLT_01715 3j9q 3j9q_A 100.0 8.7e-34 2.3e-38 240.0 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit3_3 plu1687 PLT_01714 3j9q 3j9q_A 100.0 3.7e-34 1e-38 249.4 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit3_4 plu1686 PLT_01713 3j9q 3j9q_A 99.9 9e-29 2.4e-33 211.5 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit3_5 plu1685 PLT_01712 4tv4 4tv4_A 61.4 3.0 7.9e-05 30.2 >4tv4_A Uncharacterized protein; unknown function, ssgcid, virulence, structural genomics; 2.10A {Burkholderia pseudomallei} No DOI found.
PVCunit3_6 plu1684 PLT_01711 1x8d 1x8d_A 72.3 1.2 3.3e-05 26.0 >1x8d_A Hypothetical protein YIIL; mutarotase, L-rhamnose, biosynthetic protein; HET: RNS; 1.80A {Escherichia coli} SCOP: d.58.4.21 10.1016/j.jmb.2005.03.047
PVCunit3_7 plu1683 PLT_01710 1avo 1avo_B 30.8 20 0.00052 26.9 >1avo_B 11S regulator; proteasome activator, cell adhesion, interferon induction; 2.80A {Homo sapiens} SCOP: a.24.8.1 10.1038/37670
PVCunit3_8 plu1682 PLT_01709 4uhv 4uhv_A 99.9 9.5e-29 2.5e-33 236.1 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVCunit3_9 plu1681 PLT_01708 2ia7 2ia7_A 99.7 8.8e-21 2.4e-25 127.1 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCunit3_10 plu1680 PLT_01707 4rnd 4rnd_B 32.1 18 0.00048 24.5 >4rnd_B V-type proton ATPase subunit F; alpha helical, rossmann fold, hydrolase, regulatory, couplin; 3.18A {Saccharomyces cerevisiae S288C} PDB: 3j9u_N 3j9v_N 3j9t_N 10.1074/jbc.M114.622688
PVCunit3_11 plu1679 PLT_01706 3h2t 3h2t_A 96.0 0.00014 3.8e-09 73.6 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCunit3_12 plu1678 PLT_01705 5a9c 5a9c_A 33.6 16 0.00044 36.7 >5a9c_A Polyhedrin; viral protein, insect virus occlusion BODY, microcrystal; 1.71A {Antheraea mylitta cypovirus 4} 10.1016/j.jsb.2015.08.009
PVCunit3_13 plu1677 PLT_01704 1ocy 1ocy_A 96.8 1.2e-05 3.1e-10 66.1 >1ocy_A Bacteriophage T4 short tail fibre; structural protein, fibrous protein, LIPO-polysaccharide binding, bacteriophage structural protein; HET: CIT; 1.5A {Bacteriophage T4} SCOP: d.231.1.1 10.1016/S0022-2836(03)00755-1
PVCunit3_14 plu1676 PLT_01703 2vb2 2vb2_X 20.9 39.0 0.001 26.6 >2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X 10.1038/nchembio.2007.57
PVCunit3_15 plu1675 PLT_01702 5ftj 5ftj_A 99.8 1.3e-25 3.4e-30 222.4 >5ftj_A Transitional endoplasmic reticulum ATPase; hydrolase, single-particle, AAA ATPase; HET: ADP OJA; 2.30A {Homo sapiens} PDB: 3cf1_A* 3cf3_A* 3cf2_A* 5ftk_A* 5ftl_A* 5ftm_A* 5ftn_A* 1r7r_A* 5c19_A 5c1b_A* 5c18_A* 3cf0_A* 10.1126/science.aad7974
PVCunit3_16 plu1674 PLT_01701 4faz 4faz_A 33.5 17 0.00044 20.9 >4faz_A 4-oxalocrotonate isomerase protein; alpha/beta fold, tautomerase; 1.57A {Methylibium petroleiphilum} 10.1016/j.abb.2013.06.016
PVCunit3_17 plu1673 PLT_01700 1vwx 1vwx_f 46.3 7.7 0.00021 26.0 >1vwx_f Ribosomal protein EL33; mammalian, ribosome; 3.40A {Sus scrofa} PDB: 1vwz_f 1vx1_f 1vx4_f 3j3b_f 4cxd_f 4upx_f 4uq1_f 4w20_f 4w22_f 4w25_f 4w27_f Key error. ID likely deprecated.
PVCunit3_18 plu1672 PLT_01699 3i6x 3i6x_A 23.1 33 0.00089 27.9 >3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical, calmodulin-binding, cell membrane, membrane, phosphoprotein, protein binding; 2.50A {Homo sapiens} 10.1021/acs.biochem.6b00745
PVCunit3_19 plu1671 PLT_01698 2a7o 2a7o_A 21.3 38 0.001 26.3 >2a7o_A Huntingtin interacting protein B; SRI domain, SRI, HSRI, SET2, HSET2, phosphoctd associating protein, SET2 RPB1-interacting domain, PCID, PCAP; NMR {Homo sapiens} 10.1073/pnas.0506350102
PVCunit4_1 plu1667 PLT_01696 3eaa 3eaa_A 74.4 1.0 2.7e-05 31.1 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} 10.1371/journal.pone.0012910
PVCunit4_2 plu1666 PLT_01695 3j9q 3j9q_A 100.0 1.4e-33 3.8e-38 238.7 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit4_3 plu1665 PLT_01694 3j9q 3j9q_A 100.0 6.1e-35 1.6e-39 255.3 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit4_4 plu1664 PLT_01693 3j9q 3j9q_A 99.9 9.2e-30 2.5e-34 218.9 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa} 10.1038/nsmb.2995
PVCunit4_5 plu1663 PLT_01692 4tv4 4tv4_A 69.4 1.6 4.3e-05 31.6 >4tv4_A Uncharacterized protein; unknown function, ssgcid, virulence, structural genomics; 2.10A {Burkholderia pseudomallei} No DOI found.
PVCunit4_6 plu1662 PLT_01691 3hk4 3hk4_A 48.3 6.8 0.00018 20.5 >3hk4_A MLR7391 protein; NTF2-like protein, structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, lyase; HET: MSE; 1.96A {Mesorhizobium loti} No DOI found.
PVCunit4_7 plu1661 PLT_01690 5a3a 5a3a_A 47.6 7.1 0.00019 30.9 >5a3a_A SIR2 family protein; transferase, P-ribosyltransferase, metalloprotein, NAD-depen lipoylation, regulatory enzyme, rossmann fold; 1.54A {Streptococcus pyogenes} PDB: 5a3b_A* 5a3c_A* 10.1016/j.molcel.2015.06.013
PVCunit4_8 plu1660 PLT_01689 4uhv 4uhv_A 99.9 1.7e-31 4.7e-36 254.9 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A* 10.1107/S205979831502149X
PVCunit4_9 plu1659 PLT_01688 2ia7 2ia7_A 99.7 4.7e-22 1.3e-26 135.0 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1 No DOI found.
PVCunit4_10 plu1658 PLT_01687 2k4r 2k4r_A 30.7 20 0.00053 20.8 >2k4r_A Neurotrypsin; kringle domain, disulfide-rich protein fold, serine endopeptidase, hydrolase, extracellular proteolysis; NMR {Rattus norvegicus} PDB: 2k51_A 10.1021/bi800555z
PVCunit4_11 plu1657 PLT_01686 3h2t 3h2t_A 96.6 2.6e-05 6.8e-10 78.9 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A 10.1016/j.str.2009.04.005
PVCunit4_12 plu1656 PLT_01685 3p9y 3p9y_A 34.4 16.0 0.00042 36.6 >3p9y_A CG14216, LD40846P; phosphatase, CIS proline, LMW PTP-like fold, RNA polymerase hydrolase; HET: N7P SEP SET IMD PG4; 2.10A {Drosophila melanogaster} PDB: 4imi_B* 4imj_B* 4ygx_B* 3fdf_A 3fmv_A 3omx_A 3omw_A 10.1074/jbc.M110.197129
PVCunit4_13 plu1655 PLT_01684 1ocy 1ocy_A 98.1 3.7e-09 9.9e-14 88.4 >1ocy_A Bacteriophage T4 short tail fibre; structural protein, fibrous protein, LIPO-polysaccharide binding, bacteriophage structural protein; HET: CIT; 1.5A {Bacteriophage T4} SCOP: d.231.1.1 10.1016/S0022-2836(03)00755-1
PVCunit4_14 plu1654 PLT_01683 2kx7 2kx7_A 33.4 17.0 0.00044 31.7 >2kx7_A Sensor-like histidine kinase YOJN; alpha-beta-loop (ABL) domain, phosphotransfer, RCS regulatio two-component system, protein binding; NMR {Escherichia coli} 10.1016/j.str.2011.01.012
PVCunit4_15 plu1653 PLT_01682 5ftj 5ftj_A 99.8 5.6e-25 1.5e-29 218.0 >5ftj_A Transitional endoplasmic reticulum ATPase; hydrolase, single-particle, AAA ATPase; HET: ADP OJA; 2.30A {Homo sapiens} PDB: 3cf1_A* 3cf3_A* 3cf2_A* 5ftk_A* 5ftl_A* 5ftm_A* 5ftn_A* 1r7r_A* 5c19_A 5c1b_A* 5c18_A* 3cf0_A* 10.1126/science.aad7974
PVCunit4_16 plu1652 PLT_01681 4p7x 4p7x_A 18.4 48.0 0.0013 28.5 >4p7x_A P4H, L-proline CIS-4-hydroxylase; HET: AKG CXS; 1.30A {Rhizobium loti} PDB: 4p7w_A* 10.1021/sb500247a
PVCunit4_17 plu1651 PLT_01680 2yy0 2yy0_A 42.7 9.5 0.00025 26.4 >2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens} No DOI found.
PVClumt_0 PAU_02249 PAU_02208 2dpm 2dpm_A 42.0 10 0.00027 32.9 >2dpm_A M.dpnii 1, protein (adenine-specific methyltransferase dpnii; DNA adenine methyltransferase, methylase, methyltransferase group alpha; HET: SAM; 1.80A {Streptococcus pneumoniae} SCOP: c.66.1.28
PVClumt_0 PAK_2217 PAK_02015 4v02 4v02_C 53.8 5.0 0.00013 34.3 >4v02_C MINC, probable septum site-determining protein MINC; cell cycle, bacterial cell division, FTSZ, MIN system; HET: ATP; 2.70A {Aquifex aeolicus}
PVCunit3_1 plu1689 PLT_01716 1l4i 1l4i_A 69.3 1.7 4.3e-05 30.5 >1l4i_A SFAE protein; periplasmic chaperone, immunoglobulin fold; 2.20A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1
PVClopT_1 PAK_2092 PAK_01896 3eaa 3eaa_A 82.2 0.39 1e-05 33.1 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda}
PVClopT_1 PAU_02112 PAU_02074 3eaa 3eaa_A 83.5 0.32 8.3e-06 33.5 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda}
PVClopT_1 plu2385 PLT_02424 3eaa 3eaa_A 82.7 0.37 9.5e-06 33.4 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda}
PVClumt_1 PAK_2216 PAK_02014 3eaa 3eaa_A 69.3 1.7 4.3e-05 30.1 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda}
PVClumt_1 PAU_02247 PAU_02206 3eaa 3eaa_A 61.3 3.0 7.9e-05 28.7 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda}
PVCpnf_1 PAK_3544 PAK_03203 3eaa 3eaa_A 78.5 0.66 1.7e-05 32.1 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda}
PVCpnf_1 PAU_03353 PAU_03392 3eaa 3eaa_A 62.9 2.7 7.1e-05 29.0 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda}
PVCunit1_1 afp1 PAU_02775 3eaa 3eaa_A 73.0 1.2 3.1e-05 30.8 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda}
PVCunit1_1 PAK_2876 PAK_02606 3eaa 3eaa_A 73.2 1.2 3.1e-05 30.8 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda}
PVCunit1_1 plu1730 PLT_01758 3eaa 3eaa_A 77.0 0.79 2.1e-05 31.7 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda}
PVCunit2_1 plu1708 PLT_01736 3eaa 3eaa_A 69.5 1.6 4.2e-05 30.1 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda}
PVCunit4_1 plu1667 PLT_01696 3eaa 3eaa_A 74.4 1.0 2.7e-05 31.1 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda}
PVCcif_1 PAK_1969 PAK_01787 3jqo 3jqo_B 40.9 11 0.00028 26.9 >3jqo_B TRAO protein; helical outer membrane TM, outer membrane protein complex, T protein; HET: LDA; 2.60A {Escherichia coli} PDB: 3zbi_B 2ofq_A
PVCcif_1 PAU_01993 PAU_01961 3jqo 3jqo_B 41.5 10 0.00027 27.0 >3jqo_B TRAO protein; helical outer membrane TM, outer membrane protein complex, T protein; HET: LDA; 2.60A {Escherichia coli} PDB: 3zbi_B 2ofq_A
PVCcif_1 plu2531 PLT_02568 3jqo 3jqo_B 47.2 7.4 0.00019 27.7 >3jqo_B TRAO protein; helical outer membrane TM, outer membrane protein complex, T protein; HET: LDA; 2.60A {Escherichia coli} PDB: 3zbi_B 2ofq_A
PVCcif_2 PAK_1970 PAK_01788 3j9q 3j9q_A 100.0 3.7e-34 9.7e-39 242.8 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa}
PVCcif_2 PAU_01994 PAU_01962 3j9q 3j9q_A 99.9 4.5e-33 1.2e-37 236.1 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa}
PVCcif_2 plu2530 PLT_02567 3j9q 3j9q_A 99.9 1.5e-31 4e-36 226.6 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa}
PVClopT_2 PAK_2091 PAK_01895 3j9q 3j9q_A 100.0 2.5e-35 6.4e-40 248.6 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa}
PVClopT_2 PAU_02111 PAU_02073 3j9q 3j9q_A 100.0 2.8e-35 7.3e-40 248.2 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa}
PVClopT_2 plu2386 PLT_02425 3j9q 3j9q_A 99.9 4.2e-33 1.1e-37 235.7 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa}
PVClumt_2 PAK_2215 PAK_02013 3j9q 3j9q_A 99.6 1.4e-19 3.6e-24 154.2 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa}
PVClumt_2 PAU_02246 PAU_02205 3j9q 3j9q_A 99.9 8.1e-31 2.1e-35 228.3 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa}
PVCpnf_2 PAK_3543 PAK_03202 3j9q 3j9q_A 100.0 3e-34 7.9e-39 242.5 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa}
PVCpnf_2 PAU_03352 PAU_03391 3j9q 3j9q_A 100.0 2e-34 5.3e-39 243.5 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa}
PVCunit1_2 afp2 PAU_02776 3j9q 3j9q_A 100.0 3.7e-36 9.7e-41 254.4 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa}
PVCunit1_2 PAK_2877 PAK_02607 3j9q 3j9q_A 100.0 3.8e-34 1e-38 242.1 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa}
PVCunit1_2 plu1729 PLT_01757 3j9q 3j9q_A 100.0 2.6e-35 6.7e-40 248.9 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa}
PVCunit2_2 plu1707 PLT_01735 3j9q 3j9q_A 100.0 1.2e-33 3.2e-38 239.0 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa}
PVCunit3_2 plu1688 PLT_01715 3j9q 3j9q_A 100.0 8.9e-34 2.3e-38 240.0 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa}
PVCunit4_2 plu1666 PLT_01695 3j9q 3j9q_A 100.0 1.4e-33 3.8e-38 238.7 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa}
PVCcif_3 PAK_1971 PAK_01789 3j9q 3j9q_A 99.9 1.8e-31 4.8e-36 234.4 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa}
PVCcif_3 PAU_01995 PAU_01963 3j9q 3j9q_A 99.9 1.3e-30 3.4e-35 228.9 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa}
PVCcif_3 plu2529 PLT_02566 3j9q 3j9q_A 100.0 3.8e-36 9.8e-41 262.4 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa}
PVClopT_3 plu2387 PLT_02426 3j9q 3j9q_A 100.0 4.1e-34 1.1e-38 247.2 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa}
PVClumt_3 PAK_2214 PAK_02012 3j9q 3j9q_A 98.2 1.5e-09 3.9e-14 75.6 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa}
PVCpnf_3 PAK_3542 PAK_03201 3j9q 3j9q_A 99.9 8.7e-33 2.3e-37 239.9 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa}
PVCpnf_3 PAU_03351 PAU_03390 3j9q 3j9q_A 99.9 4e-33 1e-37 241.7 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa}
PVCunit1_3 afp3 PAU_02777 3j9q 3j9q_A 100.0 2.6e-35 6.9e-40 257.2 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa}
PVCunit1_3 PAK_2878 PAK_02608 3j9q 3j9q_A 100.0 6.9e-34 1.8e-38 247.8 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa}
PVCunit1_3 plu1728 PLT_01756 3j9q 3j9q_A 100.0 8.6e-34 2.2e-38 247.3 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa}
PVCunit2_3 plu1706 PLT_01734 3j9q 3j9q_A 100.0 1.6e-34 4.3e-39 253.7 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa}
PVCunit3_3 plu1687 PLT_01714 3j9q 3j9q_A 100.0 3.8e-34 1e-38 249.4 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa}
PVCunit4_3 plu1665 PLT_01694 3j9q 3j9q_A 100.0 6.2e-35 1.6e-39 255.3 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa}
PVCcif_4 PAK_1972 PAK_01790 3j9q 3j9q_A 99.9 3.9e-27 1e-31 202.0 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa}
PVCcif_4 PAU_01996 PAU_01964 3j9q 3j9q_A 99.9 9.7e-27 2.5e-31 199.5 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa}
PVCcif_4 plu2528 PLT_02565 3j9q 3j9q_A 99.9 2.2e-28 5.7e-33 209.6 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa}
PVClopT_4 PAK_2090 PAK_01894 3j9q 3j9q_A 99.9 1.8e-29 4.6e-34 215.9 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa}
PVClopT_4 PAU_02110 PAU_02072 3j9q 3j9q_A 99.9 3.9e-31 1e-35 226.1 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa}
PVClopT_4 plu2388 PLT_02427 3j9q 3j9q_A 99.9 5.2e-31 1.3e-35 225.1 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa}
PVClumt_4 PAK_2213 PAK_02011 3j9q 3j9q_A 99.9 7.2e-29 1.9e-33 212.0 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa}
PVClumt_4 PAU_02245 PAU_02204 3j9q 3j9q_A 99.9 2.8e-28 7.4e-33 208.3 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa}
PVCpnf_4 PAK_3541 PAK_03200 3j9q 3j9q_A 99.9 7.1e-27 1.8e-31 200.5 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa}
PVCpnf_4 PAU_03350 PAU_03389 3j9q 3j9q_A 99.8 6.5e-26 1.7e-30 195.0 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa}
PVCunit1_4 afp4 PAU_02778 3j9q 3j9q_A 99.9 3.6e-29 9.5e-34 214.6 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa}
PVCunit1_4 PAK_2879 PAK_02609 3j9q 3j9q_A 99.9 6.1e-30 1.6e-34 219.4 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa}
PVCunit1_4 plu1727 PLT_01755 3j9q 3j9q_A 99.9 2.5e-29 6.6e-34 215.0 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa}
PVCunit2_4 plu1705 PLT_01733 3j9q 3j9q_A 99.9 7.2e-30 1.9e-34 219.0 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa}
PVCunit3_4 plu1686 PLT_01713 3j9q 3j9q_A 99.9 9.2e-29 2.4e-33 211.5 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa}
PVCunit4_4 plu1664 PLT_01693 3j9q 3j9q_A 99.9 9.4e-30 2.5e-34 218.9 >3j9q_A Sheath; pyocin, bacteriocin, sheath, structural protein; 3.50A {Pseudomonas aeruginosa}
PVClopT_5 PAK_2089 PAK_01893 3eaa 3eaa_A 64.9 2.3 6.1e-05 29.4 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda}
PVClumt_5 PAK_2212 PAK_02010 3eaa 3eaa_A 72.5 1.2 3.3e-05 30.9 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda}
PVClumt_5 PAU_02244 PAU_02203 3eaa 3eaa_A 52.9 5.3 0.00014 27.7 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda}
PVCpnf_5 PAK_3540 PAK_03199 3eaa 3eaa_A 92.6 0.018 4.7e-07 40.1 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda}
PVCpnf_5 PAU_03349 PAU_03388 3eaa 3eaa_A 92.7 0.017 4.4e-07 40.3 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda}
PVCunit1_5 plu1726 PLT_01754 3eaa 3eaa_A 82.2 0.39 1e-05 33.3 >3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda}
PVCunit2_5 plu1704 PLT_01732 4etv 4etv_A 39.0 12 0.00032 27.6 >4etv_A Ryanodine receptor 2; phosphorylation, cardiac, metal transport; 1.65A {Mus musculus}
PVCcif_5 PAK_1973 PAK_01791 4tv4 4tv4_A 40.1 11 0.0003 27.1 >4tv4_A Uncharacterized protein; unknown function, ssgcid, virulence, structural genomics; 2.10A {Burkholderia pseudomallei}
PVCcif_5 PAU_01997 PAU_01965 4tv4 4tv4_A 57.2 4.0 0.0001 29.5 >4tv4_A Uncharacterized protein; unknown function, ssgcid, virulence, structural genomics; 2.10A {Burkholderia pseudomallei}
PVCcif_5 plu2527 PLT_02564 4tv4 4tv4_A 68.0 1.8 4.8e-05 31.3 >4tv4_A Uncharacterized protein; unknown function, ssgcid, virulence, structural genomics; 2.10A {Burkholderia pseudomallei}
PVClopT_5 PAU_02109 PAU_02071 4tv4 4tv4_A 70.8 1.5 3.8e-05 31.8 >4tv4_A Uncharacterized protein; unknown function, ssgcid, virulence, structural genomics; 2.10A {Burkholderia pseudomallei}
PVClopT_5 plu2389 PLT_02428 4tv4 4tv4_A 66.1 2.1 5.6e-05 30.9 >4tv4_A Uncharacterized protein; unknown function, ssgcid, virulence, structural genomics; 2.10A {Burkholderia pseudomallei}
PVCunit1_5 afp5 PAU_02779 4tv4 4tv4_A 63.6 2.6 6.7e-05 30.5 >4tv4_A Uncharacterized protein; unknown function, ssgcid, virulence, structural genomics; 2.10A {Burkholderia pseudomallei}
PVCunit1_5 PAK_2880 PAK_02610 4tv4 4tv4_A 63.0 2.7 7e-05 30.4 >4tv4_A Uncharacterized protein; unknown function, ssgcid, virulence, structural genomics; 2.10A {Burkholderia pseudomallei}
PVCunit3_5 plu1685 PLT_01712 4tv4 4tv4_A 61.4 3.0 7.9e-05 30.2 >4tv4_A Uncharacterized protein; unknown function, ssgcid, virulence, structural genomics; 2.10A {Burkholderia pseudomallei}
PVCunit4_5 plu1663 PLT_01692 4tv4 4tv4_A 69.4 1.6 4.3e-05 31.6 >4tv4_A Uncharacterized protein; unknown function, ssgcid, virulence, structural genomics; 2.10A {Burkholderia pseudomallei}
PVCcif_6 plu2526 PLT_02563 1use 1use_A 63.2 2.7 6.9e-05 23.2 >1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
PVClumt_6 PAK_2211 PAK_02009 1use 1use_A 68.7 1.7 4.5e-05 24.0 >1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
PVClumt_6 PAU_02243 PAU_02202 1use 1use_A 67.8 1.9 4.9e-05 23.9 >1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
PVCunit1_6 plu1725 PLT_01753 1use 1use_A 58.6 3.7 9.6e-05 22.6 >1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
PVCunit3_6 plu1684 PLT_01711 1x8d 1x8d_A 72.3 1.3 3.3e-05 26.0 >1x8d_A Hypothetical protein YIIL; mutarotase, L-rhamnose, biosynthetic protein; HET: RNS; 1.80A {Escherichia coli} SCOP: d.58.4.21
PVClopT_6 PAK_2088 PAK_01892 2v1l 2v1l_A 26.7 26 0.00069 22.5 >2v1l_A Hypothetical protein; pathogenicity island, unknown function; 2.13A {Vibrio cholerae}
PVCunit4_6 plu1662 PLT_01691 3hk4 3hk4_A 45.6 8.2 0.00021 20.2 >3hk4_A MLR7391 protein; NTF2-like protein, structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, lyase; HET: MSE; 1.96A {Mesorhizobium loti}
PVCcif_6 PAU_01998 PAU_01966 3nyi 3nyi_A 42.8 9.7 0.00025 24.7 >3nyi_A FAT acid-binding protein; stearic acid, DEGV family protein, structural genomics, PSI- protein structure initiative; HET: STE; 1.90A {Eubacterium ventriosum}
PVCcif_6 PAK_1974 PAK_01792 3rjr 3rjr_A 53.8 5 0.00013 26.1 >3rjr_A Transforming growth factor beta-1; TGF beta, activation, integrin, cytokine; HET: NAG; 3.05A {Sus scrofa}
PVCpnf_6 PAK_3539 PAK_03198 4aaa 4aaa_A 78.2 0.68 1.8e-05 28.3 >4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*
PVCpnf_6 PAU_03348 PAU_03387 4aaa 4aaa_A 78.2 0.68 1.8e-05 28.3 >4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*
PVCunit1_6 afp7 PAU_02780 4e71 4e71_A 48.8 6.8 0.00018 24.0 >4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
PVCunit2_6 plu1703 PLT_01731 4e71 4e71_A 53.7 5.0 0.00013 24.5 >4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
PVClopT_6 PAU_02108 PAU_02070 4hf1 4hf1_A 81.1 0.47 1.2e-05 28.7 >4hf1_A HTH-type transcriptional regulator ISCR; WHTH, protein-DNA complex, iron-sulfur cluster, winged helix helix, transcriptional regulator, redox sensor; HET: DNA; 2.22A {Escherichia coli} PDB: 4hf2_A* 4chu_A
PVCunit1_6 PAK_2881 PAK_02611 4yci 4yci_A 66.4 2.1 5.4e-05 26.8 >4yci_A Bone morphogenetic protein 9 growth factor domain; Pro-BMP complex, transforming growth factor-beta cytokine; HET: NAG; 3.25A {Mus musculus} PDB: 4ycg_A*
PVClopT_6 plu2390 PLT_02429 4zmk 4zmk_A 51.9 5.6 0.00015 24.7 >4zmk_A Telomere length regulator TAZ1; dimerization domain, fission yeast, DNA binding PR; 1.50A {Schizosaccharomyces pombe}
PVCunit1_7 plu1724 PLT_01752 1avo 1avo_B 32.8 18 0.00046 27.2 >1avo_B 11S regulator; proteasome activator, cell adhesion, interferon induction; 2.80A {Homo sapiens} SCOP: a.24.8.1
PVCunit3_7 plu1683 PLT_01710 1avo 1avo_B 30.8 20 0.00052 26.9 >1avo_B 11S regulator; proteasome activator, cell adhesion, interferon induction; 2.80A {Homo sapiens} SCOP: a.24.8.1
PVCpnf_7 PAK_3538 PAK_03197 1pp0 1pp0_A 18.8 48.0 0.0013 26.7 >1pp0_A Volvatoxin A2; ingot crystal form; 1.42A {Volvariella volvacea} SCOP: d.103.1.1 PDB: 1pp6_A 1vgf_A 1vcy_A
PVCpnf_7 PAU_03347 PAU_03386 2v6x 2v6x_B 36.8 14 0.00036 26.4 >2v6x_B DOA4-independent degradation protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
PVClopT_7 PAU_02107 PAU_02069 2vol 2vol_A 28.5 23 0.00061 22.9 >2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
PVClopT_7 PAK_2087 PAK_01891 3zo0 3zo0_A 61.8 2.9 7.7e-05 27.8 >3zo0_A IG gamma-2A chain C region, A allele; immune system-ligase complex; HET: NAG BMA MAN GAL FUC; 1.99A {Mus musculus} PDB: 2rgs_A*
PVCcif_7 plu2525 PLT_02562 4bs6 4bs6_A 22.6 35 0.00092 24.5 >4bs6_A Cathepsin S; hydrolase, cysteine protease, covalent ligand; HET: JG7; 1.20A {Mus musculus} PDB: 4bpv_A* 4bqv_A* 4bs5_A* 4bsq_A* 4mzo_A* 4mzs_A* 4p6e_A* 2h7j_A* 2f1g_A* 2hh5_B* 2hhn_A* 2hxz_A* 2op3_A* 1ms6_A* 2r9m_A* 2r9n_A* 2r9o_A* 3n3g_A* 3n4c_A* 4p6g_A* 3ovx_A* 2frq_A* 2fra_A* 2fq9_A* 2ft2_A* 2fud_A* 2g7y_A* 1nqc_A* 1npz_A* 2g6d_A* ...
PVClumt_7 PAK_2210 PAK_02008 4v2x 4v2x_A 33.0 17.0 0.00046 31.3 >4v2x_A Endo-beta-1,4-glucanase (cellulase B); hydrolase, TRI-modular; 1.64A {Bacillus halodurans}
PVClumt_7 PAU_02242 PAU_02201 4v2x 4v2x_A 32.7 18.0 0.00047 31.3 >4v2x_A Endo-beta-1,4-glucanase (cellulase B); hydrolase, TRI-modular; 1.64A {Bacillus halodurans}
PVCcif_7 PAK_1975 PAK_01793 5a3a 5a3a_A 50.8 6 0.00016 31.4 >5a3a_A SIR2 family protein; transferase, P-ribosyltransferase, metalloprotein, NAD-depen lipoylation, regulatory enzyme, rossmann fold; 1.54A {Streptococcus pyogenes} PDB: 5a3b_A* 5a3c_A*
PVCcif_7 PAU_01999 PAU_01967 5a3a 5a3a_A 47.5 7.3 0.00019 30.9 >5a3a_A SIR2 family protein; transferase, P-ribosyltransferase, metalloprotein, NAD-depen lipoylation, regulatory enzyme, rossmann fold; 1.54A {Streptococcus pyogenes} PDB: 5a3b_A* 5a3c_A*
PVClopT_7 plu2391 PLT_02430 5a3a 5a3a_A 48.7 6.8 0.00018 31.1 >5a3a_A SIR2 family protein; transferase, P-ribosyltransferase, metalloprotein, NAD-depen lipoylation, regulatory enzyme, rossmann fold; 1.54A {Streptococcus pyogenes} PDB: 5a3b_A* 5a3c_A*
PVCunit1_7 afp7 PAU_02781 5a3a 5a3a_A 45.8 8.1 0.00021 30.6 >5a3a_A SIR2 family protein; transferase, P-ribosyltransferase, metalloprotein, NAD-depen lipoylation, regulatory enzyme, rossmann fold; 1.54A {Streptococcus pyogenes} PDB: 5a3b_A* 5a3c_A*
PVCunit1_7 PAK_2882 PAK_02612 5a3a 5a3a_A 54.5 4.8 0.00012 32.0 >5a3a_A SIR2 family protein; transferase, P-ribosyltransferase, metalloprotein, NAD-depen lipoylation, regulatory enzyme, rossmann fold; 1.54A {Streptococcus pyogenes} PDB: 5a3b_A* 5a3c_A*
PVCunit2_7 plu1702 PLT_01730 5a3a 5a3a_A 64.0 2.5 6.6e-05 33.5 >5a3a_A SIR2 family protein; transferase, P-ribosyltransferase, metalloprotein, NAD-depen lipoylation, regulatory enzyme, rossmann fold; 1.54A {Streptococcus pyogenes} PDB: 5a3b_A* 5a3c_A*
PVCunit4_7 plu1661 PLT_01690 5a3a 5a3a_A 47.6 7.3 0.00019 30.9 >5a3a_A SIR2 family protein; transferase, P-ribosyltransferase, metalloprotein, NAD-depen lipoylation, regulatory enzyme, rossmann fold; 1.54A {Streptococcus pyogenes} PDB: 5a3b_A* 5a3c_A*
PVClumt_8 PAK_2209 PAK_02007 2p5z 2p5z_X 99.7 1.5e-21 3.8e-26 177.2 >2p5z_X Type VI secretion system component; structural genomics, unknown function, PSI-2, protein struct initiative; 2.60A {Escherichia coli O6} SCOP: b.40.8.1 b.106.1.1 b.106.1.1
PVClumt_8 PAU_02241 PAU_02200 2p5z 2p5z_X 99.7 5.6e-22 1.5e-26 179.9 >2p5z_X Type VI secretion system component; structural genomics, unknown function, PSI-2, protein struct initiative; 2.60A {Escherichia coli O6} SCOP: b.40.8.1 b.106.1.1 b.106.1.1
PVCcif_8 PAK_1976 PAK_01794 4uhv 4uhv_A 99.9 4.6e-28 1.2e-32 231.4 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A*
PVCcif_8 PAU_02000 PAU_01968 4uhv 4uhv_A 99.9 1e-27 2.6e-32 229.1 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A*
PVCcif_8 plu2524 PLT_02561 4uhv 4uhv_A 99.9 3.3e-27 8.6e-32 225.6 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A*
PVClopT_8 PAK_2086 PAK_01890 4uhv 4uhv_A 99.9 8.4e-29 2.2e-33 236.5 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A*
PVClopT_8 PAU_02106 PAU_02068 4uhv 4uhv_A 99.9 8.6e-30 2.2e-34 243.3 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A*
PVClopT_8 plu2392 PLT_02431 4uhv 4uhv_A 99.9 3.8e-31 1e-35 252.7 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A*
PVCpnf_8 PAK_3537 PAK_03196 4uhv 4uhv_A 99.9 9.9e-29 2.6e-33 236.3 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A*
PVCpnf_8 PAU_03346 PAU_03385 4uhv 4uhv_A 99.9 8.2e-29 2.1e-33 236.9 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A*
PVCunit1_8 PAK_2883 PAK_02613 4uhv 4uhv_A 99.9 2.4e-30 6.4e-35 247.1 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A*
PVCunit1_8 PAU_02796 PAU_02782 4uhv 4uhv_A 99.9 1.4e-30 3.7e-35 248.7 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A*
PVCunit1_8 plu1723 PLT_01751 4uhv 4uhv_A 99.9 4e-29 1e-33 238.8 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A*
PVCunit2_8 plu1701 PLT_01729 4uhv 4uhv_A 99.9 2.2e-30 5.8e-35 247.3 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A*
PVCunit3_8 plu1682 PLT_01709 4uhv 4uhv_A 99.9 9.8e-29 2.5e-33 236.1 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A*
PVCunit4_8 plu1660 PLT_01689 4uhv 4uhv_A 99.9 1.8e-31 4.7e-36 254.9 >4uhv_A VGRG1, valine-glycine repeat protein G1; structural protein, virulence, toxin, effector, punct device, spike, T6SS, P. aeruginosa; 1.88A {Pseudomonas aeruginosa} PDB: 4mtk_A*
PVCcif_9 PAK_1977 PAK_01795 2ia7 2ia7_A 99.7 9.7e-22 2.5e-26 131.7 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVCcif_9 PAU_02001 PAU_01969 2ia7 2ia7_A 99.7 8.1e-22 2.1e-26 132.1 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVCcif_9 plu2523 PLT_02560 2ia7 2ia7_A 99.8 5.4e-25 1.4e-29 146.2 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVClopT_9 PAK_2085 PAK_01889 2ia7 2ia7_A 99.8 2.2e-23 5.8e-28 137.0 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVClopT_9 PAU_02105 PAU_02067 2ia7 2ia7_A 99.8 2.3e-23 6e-28 138.6 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVClopT_9 plu2393 PLT_02432 2ia7 2ia7_A 99.8 1.1e-23 2.7e-28 140.3 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVClumt_9 PAK_2208 PAK_02006 2ia7 2ia7_A 99.7 6.7e-22 1.7e-26 132.6 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVClumt_9 PAU_02240 PAU_02199 2ia7 2ia7_A 99.7 3.7e-22 9.6e-27 133.8 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVCpnf_9 PAK_3536 PAK_03195 2ia7 2ia7_A 99.7 1.5e-21 3.9e-26 129.9 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVCpnf_9 PAU_03345 PAU_03384 2ia7 2ia7_A 99.7 1e-21 2.6e-26 130.8 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVCunit1_9 afp9 PAU_02783 2ia7 2ia7_A 99.7 5.4e-22 1.4e-26 133.1 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVCunit1_9 PAK_2884 PAK_02614 2ia7 2ia7_A 99.7 1e-21 2.6e-26 131.7 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVCunit1_9 plu1722 PLT_01750 2ia7 2ia7_A 99.2 2.9e-15 7.7e-20 106.9 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVCunit2_9 plu1700 PLT_01728 2ia7 2ia7_A 99.7 1.1e-22 2.9e-27 138.2 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVCunit3_9 plu1681 PLT_01708 2ia7 2ia7_A 99.7 9e-21 2.4e-25 127.1 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVCunit4_9 plu1659 PLT_01688 2ia7 2ia7_A 99.7 4.8e-22 1.3e-26 135.0 >2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
PVCunit1_10 PAK_2885 PAK_02615 1ngv 1ngv_A 43.2 9.4 0.00025 31.0 >1ngv_A Amyloid beta precursor protein-binding protein 1; signaling protein; 2.60A {Homo sapiens} PDB: 3gzn_A* 1yov_A 2nvu_A* 1r4m_A 1r4n_A* 1tt5_A 3dbh_A 3dbl_A 3dbr_A
PVCunit1_10 afp10 PAU_02784 1pml 1pml_A 37.7 13 0.00034 21.4 >1pml_A Tissue plasminogen activator kringle 2; hydrolase(serine protease); 2.38A {Homo sapiens} SCOP: g.14.1.1 PDB: 1pk2_A* 1tpk_A
PVCpnf_10 PAK_3535 PAK_03194 1ukf 1ukf_A 77.5 0.75 1.9e-05 35.1 >1ukf_A Avirulence protein AVRPPH3; AVRPPHB, hypersensitive response, hydrolase; 1.35A {Pseudomonas syringae PV} SCOP: d.3.1.10
PVCpnf_10 PAU_03344 PAU_03383 1ukf 1ukf_A 82.0 0.4 1.1e-05 36.7 >1ukf_A Avirulence protein AVRPPH3; AVRPPHB, hypersensitive response, hydrolase; 1.35A {Pseudomonas syringae PV} SCOP: d.3.1.10
PVCunit1_10 plu1721 PLT_01749 2fwm 2fwm_X 33.8 17 0.00043 23.1 >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossmann fold, chorismate metabolism, short-CH oxidoreductase, tetramer; 2.00A {Escherichia coli}
PVCcif_10 PAK_1978 PAK_01796 2k4r 2k4r_A 37.5 13 0.00035 21.5 >2k4r_A Neurotrypsin; kringle domain, disulfide-rich protein fold, serine endopeptidase, hydrolase, extracellular proteolysis; NMR {Rattus norvegicus} PDB: 2k51_A
PVCunit2_10 plu1699 PLT_01727 2k4r 2k4r_A 34.4 16 0.00042 21.1 >2k4r_A Neurotrypsin; kringle domain, disulfide-rich protein fold, serine endopeptidase, hydrolase, extracellular proteolysis; NMR {Rattus norvegicus} PDB: 2k51_A
PVCunit4_10 plu1658 PLT_01687 2k4r 2k4r_A 30.7 20 0.00053 20.7 >2k4r_A Neurotrypsin; kringle domain, disulfide-rich protein fold, serine endopeptidase, hydrolase, extracellular proteolysis; NMR {Rattus norvegicus} PDB: 2k51_A
PVCcif_10 PAU_02002 PAU_01970 3dfz 3dfz_A 35.9 15 0.00038 26.2 >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
PVClopT_10 PAK_2084 PAK_01888 3ojo 3ojo_A 69.6 1.6 4.2e-05 34.0 >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*
PVClopT_10 PAU_02104 PAU_02066 3ojo 3ojo_A 31.3 19 0.00051 28.0 >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*
PVClumt_10 PAK_2207 PAK_02005 3ull 3ull_A 58.1 3.8 9.8e-05 26.7 >3ull_A DNA binding protein; DNA replication, mitochondrion, transit peptide; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 PDB: 1s3o_A* 2dud_A
PVClumt_10 afp10 PAU_02198 4jiv 4jiv_D 69.6 1.6 4.2e-05 27.5 >4jiv_D VCA0105, putative uncharacterized protein; PAAR-repeat motif, membrane piercing, type VI secretion SYST vibrio cholerae VGRG2; HET: PLM STE ELA; 1.90A {Vibrio cholerae o1 biovar eltor}
PVCcif_10 plu2522 PLT_02559 4jiw 4jiw_D 77.4 0.75 2e-05 28.8 >4jiw_D C1882, putative uncharacterized protein; PAAR-repeat motif, membrane piercing, type VI secretion SYST spike, cell puncturing device, beta-helix; 3.40A {Escherichia coli}
PVClopT_10 plu2394 PLT_02433 4jiw 4jiw_D 61.0 3.1 8.1e-05 26.0 >4jiw_D C1882, putative uncharacterized protein; PAAR-repeat motif, membrane piercing, type VI secretion SYST spike, cell puncturing device, beta-helix; 3.40A {Escherichia coli}
PVCunit3_10 plu1680 PLT_01707 4rnd 4rnd_B 32.1 18 0.00048 24.5 >4rnd_B V-type proton ATPase subunit F; alpha helical, rossmann fold, hydrolase, regulatory, couplin; 3.18A {Saccharomyces cerevisiae S288C} PDB: 3j9u_N 3j9v_N 3j9t_N 5d80_o
PVClumt_11 PAK_2206 PAK_02004 2kcp 2kcp_A 37.9 13 0.00034 29.9 >2kcp_A 30S ribosomal protein S8E; RPS8E, beta, NESG, ribonucleoprotein, structural genomics, PSI-2; NMR {Methanothermobacter thermautotrophicusstr} PDB: 2kcy_A
PVCcif_11 PAK_1979 PAK_01797 3h2t 3h2t_A 96.1 0.00012 3.2e-09 74.0 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A
PVCcif_11 PAU_02003 PAU_01971 3h2t 3h2t_A 96.4 5.2e-05 1.4e-09 76.8 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A
PVCcif_11 plu2521 PLT_02558 3h2t 3h2t_A 96.6 2.6e-05 6.7e-10 79.0 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A
PVClopT_11 PAK_2083 PAK_01887 3h2t 3h2t_A 96.8 9.7e-06 2.5e-10 85.1 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A
PVClopT_11 PAU_02103 PAU_02065 3h2t 3h2t_A 97.1 2.3e-06 6.1e-11 89.7 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A
PVClopT_11 plu2395 PLT_02434 3h2t 3h2t_A 97.5 2.7e-07 7.1e-12 96.6 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A
PVClumt_11 afp11 PAU_02197 3h2t 3h2t_A 96.8 9.6e-06 2.5e-10 78.8 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A
PVCpnf_11 PAK_3534 PAK_03193 3h2t 3h2t_A 96.8 8.4e-06 2.2e-10 80.7 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A
PVCpnf_11 PAU_03343 PAU_03382 3h2t 3h2t_A 97.4 4.4e-07 1.2e-11 89.7 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A
PVCunit1_11 afp11 PAU_02785 3h2t 3h2t_A 96.7 1.5e-05 3.9e-10 80.6 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A
PVCunit1_11 PAK_2886 PAK_02616 3h2t 3h2t_A 96.6 1.9e-05 4.9e-10 79.9 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A
PVCunit1_11 plu1720 PLT_01748 3h2t 3h2t_A 96.0 0.00015 4e-09 73.4 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A
PVCunit2_11 plu1698 PLT_01726 3h2t 3h2t_A 96.8 8e-06 2.1e-10 82.6 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A
PVCunit3_11 plu1679 PLT_01706 3h2t 3h2t_A 96.0 0.00014 3.8e-09 73.6 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A
PVCunit4_11 plu1657 PLT_01686 3h2t 3h2t_A 96.6 2.6e-05 6.8e-10 78.9 >3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A
PVCcif_12 plu2520 PLT_02557 1fho 1fho_A 64.0 2.5 6.5e-05 33.9 >1fho_A UNC-89; pleckstrin homology domain, electrostatics, muscle, signal transduction, signaling protein; NMR {Caenorhabditis elegans} SCOP: b.55.1.1
PVClopT_12 PAK_2082 PAK_01886 1ip9 1ip9_A 49.1 6.6 0.00017 31.0 >1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
PVClopT_12 PAU_02102 PAU_02064 1pqx 1pqx_A 37.4 13 0.00035 31.4 >1pqx_A Conserved hypothetical protein; ZR18,structure, autostructure,spins,autoassign, northeast structural genomics consortium; NMR {Staphylococcus aureus subsp} SCOP: d.267.1.1 PDB: 2ffm_A 2m6q_A 2m8w_A
PVClopT_12 plu2396 PLT_02435 1pqx 1pqx_A 49.6 6.5 0.00017 33.3 >1pqx_A Conserved hypothetical protein; ZR18,structure, autostructure,spins,autoassign, northeast structural genomics consortium; NMR {Staphylococcus aureus subsp} SCOP: d.267.1.1 PDB: 2ffm_A 2m6q_A 2m8w_A
PVCunit1_12 afp12 PAU_02786 1pqx 1pqx_A 18.2 51.0 0.0013 28.2 >1pqx_A Conserved hypothetical protein; ZR18,structure, autostructure,spins,autoassign, northeast structural genomics consortium; NMR {Staphylococcus aureus subsp} SCOP: d.267.1.1 PDB: 2ffm_A 2m6q_A 2m8w_A
PVCunit1_12 plu1719 PLT_01747 1pqx 1pqx_A 53.4 5.1 0.00013 33.8 >1pqx_A Conserved hypothetical protein; ZR18,structure, autostructure,spins,autoassign, northeast structural genomics consortium; NMR {Staphylococcus aureus subsp} SCOP: d.267.1.1 PDB: 2ffm_A 2m6q_A 2m8w_A
PVCunit1_12 PAK_2887 PAK_02617 1s5u 1s5u_A 40.5 11 0.00029 29.0 >1s5u_A Protein YBGC; structural genomics, hypothetical protein, thioesterase fold, PSI, protein structure initiative; 1.70A {Escherichia coli} SCOP: d.38.1.1 PDB: 5kl9_A* 5t07_A* 5t06_A*
PVClumt_12 PAK_2204 PAK_02002 1yo5 1yo5_C 39.0 12 0.00032 32.1 >1yo5_C SAM pointed domain containing ETS transcription factor; protein-DNA complex, double helix, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.4.5.21
PVClumt_12 PAU_02237 PAU_02196 1yo5 1yo5_C 39.5 12 0.00031 32.1 >1yo5_C SAM pointed domain containing ETS transcription factor; protein-DNA complex, double helix, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.4.5.21
PVCpnf_12 PAU_03342 PAU_03381 2ex2 2ex2_A 39.3 12.0 0.00031 38.0 >2ex2_A Penicillin-binding protein 4; cephem, penem, D-Ala alanine-carboxypeptidase, D-alanyl-D-alanine-endopeptidase, hydrolase; 1.55A {Escherichia coli} SCOP: e.3.1.3 PDB: 2ex6_A* 2ex8_A* 2ex9_A* 2exa_A* 2exb_A*
PVCpnf_12 PAK_3533 PAK_03192 2jpf 2jpf_A 32.7 18.0 0.00046 34.1 >2jpf_A Hypothetical protein; all alpha helical protein, type III secretion effector protein, structural genomics; NMR {Bordetella parapertussis}
PVCunit4_12 plu1656 PLT_01685 3p9y 3p9y_A 33.1 17.0 0.00045 36.4 >3p9y_A CG14216, LD40846P; phosphatase, CIS proline, LMW PTP-like fold, RNA polymerase hydrolase; HET: N7P SEP SET IMD PG4; 2.10A {Drosophila melanogaster} PDB: 4imi_B* 4imj_B* 4ygx_B* 3fdf_A 3fmv_A 3omx_A 3omw_A
PVCunit2_12 plu1697 PLT_01725 3sok 3sok_A 25.8 28.0 0.00073 29.3 >3sok_A Fimbrial protein; pilus subunit, extracellular, cell adhesion; 2.30A {Dichelobacter nodosus}
PVCcif_12 PAU_02004 PAU_01972 4orl 4orl_A 63.3 2.6 6.9e-05 37.5 >4orl_A Uncharacterized protein; PF16022 family, DUF4783, structural genomics, joint center F structural genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Bacteroides ovatus}
PVCunit3_12 plu1678 PLT_01705 5a9c 5a9c_A 33.6 17 0.00044 36.7 >5a9c_A Polyhedrin; viral protein, insect virus occlusion BODY, microcrystal; 1.71A {Antheraea mylitta cypovirus 4}
PVCcif_12 PAK_1980 PAK_01798 5efx 5efx_A 68.5 1.8 4.6e-05 36.3 >5efx_A RHO guanine nucleotide exchange factor 2; RHO GTPase, activity, signaling protein; 2.45A {Homo sapiens}
PVCcif_13 PAK_1981 PAK_01799 1ocy 1ocy_A 98.3 5.2e-10 1.4e-14 89.6 >1ocy_A Bacteriophage T4 short tail fibre; structural protein, fibrous protein, LIPO-polysaccharide binding, bacteriophage structural protein; HET: CIT; 1.5A {Bacteriophage T4} SCOP: d.231.1.1
PVCcif_13 PAU_02005 PAU_01973 1ocy 1ocy_A 98.4 2.3e-10 6e-15 91.7 >1ocy_A Bacteriophage T4 short tail fibre; structural protein, fibrous protein, LIPO-polysaccharide binding, bacteriophage structural protein; HET: CIT; 1.5A {Bacteriophage T4} SCOP: d.231.1.1
PVCunit1_13 PAU_02801 PAU_02787 1ocy 1ocy_A 98.3 6.7e-10 1.8e-14 92.9 >1ocy_A Bacteriophage T4 short tail fibre; structural protein, fibrous protein, LIPO-polysaccharide binding, bacteriophage structural protein; HET: CIT; 1.5A {Bacteriophage T4} SCOP: d.231.1.1
PVCunit1_13 plu1718 PLT_01746 1ocy 1ocy_A 98.0 9.6e-09 2.5e-13 86.7 >1ocy_A Bacteriophage T4 short tail fibre; structural protein, fibrous protein, LIPO-polysaccharide binding, bacteriophage structural protein; HET: CIT; 1.5A {Bacteriophage T4} SCOP: d.231.1.1
PVCunit3_13 plu1677 PLT_01704 1ocy 1ocy_A 96.8 1.2e-05 3.1e-10 66.1 >1ocy_A Bacteriophage T4 short tail fibre; structural protein, fibrous protein, LIPO-polysaccharide binding, bacteriophage structural protein; HET: CIT; 1.5A {Bacteriophage T4} SCOP: d.231.1.1
PVCunit4_13 plu1655 PLT_01684 1ocy 1ocy_A 98.1 3.8e-09 9.9e-14 88.4 >1ocy_A Bacteriophage T4 short tail fibre; structural protein, fibrous protein, LIPO-polysaccharide binding, bacteriophage structural protein; HET: CIT; 1.5A {Bacteriophage T4} SCOP: d.231.1.1
PVClumt_13 PAK_2203 PAK_02001 1v1h 1v1h_A 95.3 0.00092 2.4e-08 49.5 >1v1h_A Fibritin, fiber protein; chimera; 1.9A {Human adenovirus type 2} SCOP: b.83.1.1 h.1.17.1 PDB: 1v1i_A
PVClumt_13 PAU_02236 PAU_02195 1v1h 1v1h_A 97.7 9.4e-08 2.4e-12 71.3 >1v1h_A Fibritin, fiber protein; chimera; 1.9A {Human adenovirus type 2} SCOP: b.83.1.1 h.1.17.1 PDB: 1v1i_A
PVCcif_13 plu2519 PLT_02556 2xgf 2xgf_A 96.8 1.2e-05 3e-10 70.6 >2xgf_A Long tail fiber protein P37; viral protein; 2.20A {Enterobacteria phage T4}
PVCpnf_13 PAK_3532 PAK_03191 2xgf 2xgf_A 97.8 4e-08 1.1e-12 86.2 >2xgf_A Long tail fiber protein P37; viral protein; 2.20A {Enterobacteria phage T4}
PVCpnf_13 PAU_03341 PAU_03380 3izo 3izo_F 98.1 2.8e-09 7.3e-14 107.6 >3izo_F Fiber; pentameric penton base, trimeri viral protein; 3.60A {Human adenovirus 5}
PVCunit1_13 PAK_2888 PAK_02618 3izo 3izo_F 98.9 5.7e-13 1.5e-17 133.9 >3izo_F Fiber; pentameric penton base, trimeri viral protein; 3.60A {Human adenovirus 5}
PVCunit2_13 plu1696 PLT_01724 3izo 3izo_F 98.4 3.3e-10 8.5e-15 108.7 >3izo_F Fiber; pentameric penton base, trimeri viral protein; 3.60A {Human adenovirus 5}
PVClopT_14 PAK_2081 PAK_01885 1nvp 1nvp_B 34.5 16 0.00042 26.7 >1nvp_B Transcription initiation factor IIA alpha chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: a.32.1.1 PDB: 5fur_B*
PVCunit1_14 PAK_2889 PAK_02619 1ojh 1ojh_A 20.8 41.0 0.0011 26.2 >1ojh_A NBLA; degradation protein, phycobilisome degradation, protein BIND; HET: MSE; 1.80A {Anabaena SP} SCOP: a.214.1.1
PVCcif_14 PAK_1982 PAK_01800 1tuz 1tuz_A 21.4 39.0 0.001 26.1 >1tuz_A Diacylglycerol kinase alpha; transferase, HR532, nesgc, structural genomics, PSI, protein structure initiative; NMR {Homo sapiens} SCOP: a.39.1.7
PVCcif_14 PAU_02006 PAU_01974 2d8r 2d8r_A 42.5 9.8 0.00026 29.1 >2d8r_A THAP domain-containing protein 2; NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.16
PVClopT_14 plu2397 PLT_02436 2j9w 2j9w_A 27.5 25 0.00065 28.7 >2j9w_A VPS28, VPS28-PROV protein; NZF finger, HIV budding, protein transport; 1.30A {Xenopus laevis}
PVCunit4_14 plu1654 PLT_01683 2kx7 2kx7_A 33.4 17.0 0.00044 31.7 >2kx7_A Sensor-like histidine kinase YOJN; alpha-beta-loop (ABL) domain, phosphotransfer, RCS regulatio two-component system, protein binding; NMR {Escherichia coli}
PVCunit3_14 plu1676 PLT_01703 2qcp 2qcp_X 18.9 48.0 0.0012 25.7 >2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
PVCcif_14 plu2518 PLT_02555 3b1j 3b1j_C 41.9 10 0.00027 26.0 >3b1j_C CP12; alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_C*
PVCpnf_14 PAU_03340 PAU_03379 3c9p 3c9p_A 32.4 18 0.00047 32.2 >3c9p_A Uncharacterized protein SP1917; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 1.96A {Streptococcus pneumoniae}
PVCunit1_14 orf25 PAU_02788 3dzd 3dzd_A 24.8 30 0.00078 28.5 >3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
PVCpnf_14 PAK_3531 PAK_03190 3fx7 3fx7_A 45.3 8.3 0.00022 28.7 >3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} PDB: 2gts_A
PVCunit2_14 plu1695 PLT_01723 4u7b 4u7b_A 99.8 2e-23 5.3e-28 167.0 >4u7b_A Mariner MOS1 transposase; transposon synaptic complex, helix-turn-helix, like fold, DNA transposition, hydrolase-DNA complex; HET: DNA; 3.09A {Drosophila mauritiana} PDB: 4r79_A 3hos_A* 3hot_A
PVClopT_14 PAU_02101 PAU_02063 4yap 4yap_A 31.1 20 0.00052 29.1 >4yap_A Glutathione S-transferase homolog; GSH-lyase GSH-dependent; 1.11A {Sphingobium SP} PDB: 4g10_A 4yav_A*
PVCunit1_14 plu1717 PLT_01745 5l3x 5l3x_B 17.9 52.0 0.0013 32.1 >5l3x_B Negative elongation factor C/D; transcription, repressor, transcription regulation, gene EXP; 2.75A {Homo sapiens}
PVCunit2_15 plu1694 PLT_01722 2mdp 2mdp_A 23.8 32.0 0.00085 28.7 >2mdp_A Gene 1.2 protein; dntpase inhibitor, viral protein; NMR {Enterobacteria phage T7}
PVCcif_15 PAK_1983 PAK_01801 5e7p 5e7p_A 99.8 5.5e-25 1.4e-29 222.7 >5e7p_A Cell division control protein CDC48; AAA ATPase, M. smegmatic, RECA, hydrolase; HET: ADP PG4 PGE; 2.51A {Mycobacterium smegmatis}
PVCcif_15 PAU_02007 PAU_01975 5e7p 5e7p_A 99.8 4.8e-26 1.3e-30 230.3 >5e7p_A Cell division control protein CDC48; AAA ATPase, M. smegmatic, RECA, hydrolase; HET: ADP PG4 PGE; 2.51A {Mycobacterium smegmatis}
PVCcif_15 plu2517 PLT_02554 5e7p 5e7p_A 99.9 3.4e-27 8.9e-32 238.8 >5e7p_A Cell division control protein CDC48; AAA ATPase, M. smegmatic, RECA, hydrolase; HET: ADP PG4 PGE; 2.51A {Mycobacterium smegmatis}
PVClopT_15 PAK_2080 PAK_01884 5e7p 5e7p_A 99.8 4.3e-26 1.1e-30 230.6 >5e7p_A Cell division control protein CDC48; AAA ATPase, M. smegmatic, RECA, hydrolase; HET: ADP PG4 PGE; 2.51A {Mycobacterium smegmatis}
PVClopT_15 PAU_02100 PAU_02062 5e7p 5e7p_A 99.9 2e-26 5.3e-31 232.9 >5e7p_A Cell division control protein CDC48; AAA ATPase, M. smegmatic, RECA, hydrolase; HET: ADP PG4 PGE; 2.51A {Mycobacterium smegmatis}
PVClopT_15 plu2398 PLT_02437 5e7p 5e7p_A 99.9 4.6e-27 1.2e-31 237.8 >5e7p_A Cell division control protein CDC48; AAA ATPase, M. smegmatic, RECA, hydrolase; HET: ADP PG4 PGE; 2.51A {Mycobacterium smegmatis}
PVCunit1_15 PAK_2890 PAK_02620 5e7p 5e7p_A 99.9 1.8e-26 4.6e-31 233.6 >5e7p_A Cell division control protein CDC48; AAA ATPase, M. smegmatic, RECA, hydrolase; HET: ADP PG4 PGE; 2.51A {Mycobacterium smegmatis}
PVCunit1_15 PAU_02803 PAU_02789 5e7p 5e7p_A 99.9 4.9e-28 1.3e-32 244.9 >5e7p_A Cell division control protein CDC48; AAA ATPase, M. smegmatic, RECA, hydrolase; HET: ADP PG4 PGE; 2.51A {Mycobacterium smegmatis}
PVCunit1_15 plu1716 PLT_01744 5e7p 5e7p_A 99.8 2.9e-25 7.6e-30 224.7 >5e7p_A Cell division control protein CDC48; AAA ATPase, M. smegmatic, RECA, hydrolase; HET: ADP PG4 PGE; 2.51A {Mycobacterium smegmatis}
PVCunit3_15 plu1675 PLT_01702 5e7p 5e7p_A 99.9 8.1e-27 2.1e-31 236.0 >5e7p_A Cell division control protein CDC48; AAA ATPase, M. smegmatic, RECA, hydrolase; HET: ADP PG4 PGE; 2.51A {Mycobacterium smegmatis}
PVCunit4_15 plu1653 PLT_01682 5e7p 5e7p_A 99.8 3.5e-25 9e-30 224.4 >5e7p_A Cell division control protein CDC48; AAA ATPase, M. smegmatic, RECA, hydrolase; HET: ADP PG4 PGE; 2.51A {Mycobacterium smegmatis}
PVClumt_15 PAK_2199 PAK_01997 5ftj 5ftj_A 99.9 1.6e-26 4.2e-31 229.2 >5ftj_A Transitional endoplasmic reticulum ATPase; hydrolase, single-particle, AAA ATPase; HET: ADP OJA; 2.30A {Homo sapiens} PDB: 3cf1_A* 3cf3_A* 3cf2_A* 5ftk_A* 5ftl_A* 5ftm_A* 5ftn_A* 1r7r_A* 5c19_A 5c1b_A* 5c18_A* 3cf0_A*
PVClumt_15 PAU_02232 PAU_02191 5ftj 5ftj_A 99.8 2.9e-25 7.6e-30 220.3 >5ftj_A Transitional endoplasmic reticulum ATPase; hydrolase, single-particle, AAA ATPase; HET: ADP OJA; 2.30A {Homo sapiens} PDB: 3cf1_A* 3cf3_A* 3cf2_A* 5ftk_A* 5ftl_A* 5ftm_A* 5ftn_A* 1r7r_A* 5c19_A 5c1b_A* 5c18_A* 3cf0_A*
PVCpnf_15 PAK_3530 PAK_03189 5g4f 5g4f_A 99.9 7e-27 1.8e-31 225.6 >5g4f_A VCP-like ATPase; hydrolase, VAT, proteasome, protein dynamics, unfoldase, conformations, AAA ATPase; 7.00A {Thermoplasma acidophilum} PDB: 5g4g_A 1cz4_A 1cz5_A
PVCpnf_15 PAU_03339 PAU_03378 5g4f 5g4f_A 99.9 2.1e-26 5.5e-31 222.3 >5g4f_A VCP-like ATPase; hydrolase, VAT, proteasome, protein dynamics, unfoldase, conformations, AAA ATPase; 7.00A {Thermoplasma acidophilum} PDB: 5g4g_A 1cz4_A 1cz5_A
PVCcif_16 plu2516 PLT_02553 1u1j 1u1j_A 39.0 12 0.00032 35.6 >1u1j_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; methionine, synthase, methyltetrahydrofolate; HET: C2F; 2.40A {Arabidopsis thaliana} SCOP: c.1.22.2 c.1.22.2 PDB: 1u1h_A* 1u1u_A 1u22_A*
PVCunit1_16 plu1715 PLT_01743 1vwx 1vwx_f 22.5 36 0.00093 27.1 >1vwx_f Ribosomal protein EL33; mammalian, ribosome; 3.40A {Sus scrofa} PDB: 1vwz_f 1vx1_f 1vx4_f 3j3b_f 4cxd_f 4upx_f 4uq1_f 4w20_f 4w22_f 4w25_f 4w27_f
PVClopT_16 plu2399 PLT_02438 3b33 3b33_A 21.2 40.0 0.001 18.4 >3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
PVCcif_16 PAK_1984 PAK_01802 3fxd 3fxd_B 34.1 16 0.00043 28.1 >3fxd_B Protein ICMR; helix bundle, helix-turn-helix, unknown function; 2.10A {Legionella pneumophila subsp} PDB: 3fxe_B
PVClumt_16 PAK_2198 PAK_01996 3lfh 3lfh_A 39.5 12 0.00031 28.9 >3lfh_A Manxa, phosphotransferase system, mannose/fructose-speci component IIA; PTS; 1.80A {Thermoanaerobacter tengcongensis}
PVClumt_16 PAU_02231 PAU_02190 3lfh 3lfh_A 39.7 12 0.0003 28.9 >3lfh_A Manxa, phosphotransferase system, mannose/fructose-speci component IIA; PTS; 1.80A {Thermoanaerobacter tengcongensis}
PVClopT_16 PAU_02099 PAU_02061 3rbt 3rbt_A 19.3 46.0 0.0012 25.1 >3rbt_A Glutathione transferase O1; glutathione S-transferase omega3; 2.20A {Bombyx mori}
PVCpnf_16 PAK_3529 PAK_03188 3t5s 3t5s_A 61.4 3 7.9e-05 30.2 >3t5s_A Gilaa.00834.A, macrophage migration inhibitory factor; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Giardia lamblia}
PVCcif_16 PAU_02008 PAU_01976 4adx 4adx_G 38.8 12 0.00032 27.2 >4adx_G RPLX; ribosome, protein synthesis; 6.60A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2jxt_A
PVCunit3_16 plu1674 PLT_01701 4faz 4faz_A 33.5 17 0.00044 20.9 >4faz_A 4-oxalocrotonate isomerase protein; alpha/beta fold, tautomerase; 1.57A {Methylibium petroleiphilum}
PVCunit4_16 plu1652 PLT_01681 4p7x 4p7x_A 18.4 50.0 0.0013 28.5 >4p7x_A P4H, L-proline CIS-4-hydroxylase; HET: AKG CXS; 1.30A {Rhizobium loti} PDB: 4p7w_A*
PVCunit1_16 PAU_02804 PAU_02790 4uhq 4uhq_A 35.4 15 0.00039 29.3 >4uhq_A Large component of pyocin AP41; hydrolase, bacteriocin, DNAse; HET: CIT; 1.50A {Pseudomonas aeruginosa} PDB: 4uhp_A*
PVClopT_16 PAK_2079 PAK_01883 4x8k 4x8k_B 31.6 19.0 0.0005 28.0 >4x8k_B RNA polymerase-binding protein RBPA, RNA polymerase sigma factor SIGA; transcription activator; HET: EDO; 2.20A {Mycobacterium tuberculosis} PDB: 2m6p_A
PVCunit2_16 plu1693 PLT_01721 5e7p 5e7p_A 99.8 7.7e-26 2e-30 228.7 >5e7p_A Cell division control protein CDC48; AAA ATPase, M. smegmatic, RECA, hydrolase; HET: ADP PG4 PGE; 2.51A {Mycobacterium smegmatis}
PVCunit1_16 PAK_2891 PAK_02621 5fvk 5fvk_C 25.4 29.0 0.00076 20.8 >5fvk_C VFA1, VPS4-associated protein 1; hydrolase, MIT domain, yeast, ATPase; 1.66A {Saccharomyces cerevisiae} PDB: 4niq_C
PVCpnf_16 PAU_03338 PAU_03377 5jbr 5jbr_A 29.2 22 0.00058 23.9 >5jbr_A Uncharacterized protein BCAV_2135; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 1.65A {Beutenbergia cavernae}
PVCunit1_17 PAK_2892 PAK_02622 1cii 1cii_A 63.2 2.7 6.9e-05 41.7 >1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
PVCunit1_17 plu1714 PLT_01742 1eb6 1eb6_A 82.4 0.38 1e-05 31.5 >1eb6_A Neutral protease II; metalloproteinase, zinc, hydrolase; 1.0A {Aspergillus oryzae} SCOP: d.92.1.12
PVCunit3_17 plu1673 PLT_01700 1vwx 1vwx_f 46.3 7.9 0.00021 26.0 >1vwx_f Ribosomal protein EL33; mammalian, ribosome; 3.40A {Sus scrofa} PDB: 1vwz_f 1vx1_f 1vx4_f 3j3b_f 4cxd_f 4upx_f 4uq1_f 4w20_f 4w22_f 4w25_f 4w27_f
PVClumt_17 PAK_2197 PAK_01995 1wrd 1wrd_A 43.2 9.4 0.00025 32.8 >1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1 PDB: 2n2n_A
PVCunit1_17 hrpN PAU_02791 1yqf 1yqf_A 60.7 3.2 8.3e-05 33.9 >1yqf_A Hypothetical protein LMAJ011689; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.30A {Leishmania major} SCOP: d.25.1.1
PVCpnf_17 PAU_03337 PAU_03376 1yrt 1yrt_A 98.5 9e-11 2.4e-15 108.6 >1yrt_A Bifunctional hemolysin-adenylate cyclase; CYAA, layse, toxin; 2.10A {Bordetella pertussis} PDB: 1yru_A 1zot_A* 2col_A
PVClopT_17 PAU_02098 PAU_02060 2ebf 2ebf_X 100.0 5.6e-90 1.5e-94 707.6 >2ebf_X Dermonecrotic toxin; pasteurella multocida toxin, trojan horse-like fold; HET: TRE; 1.90A {Pasteurella multocida} SCOP: a.296.1.1 c.150.1.2 d.3.1.17 PDB: 2ec5_A 2ebh_X*
PVClopT_17 plu2400 PLT_02439 2ebf 2ebf_X 100.0 1.6e-85 4.1e-90 674.4 >2ebf_X Dermonecrotic toxin; pasteurella multocida toxin, trojan horse-like fold; HET: TRE; 1.90A {Pasteurella multocida} SCOP: a.296.1.1 c.150.1.2 d.3.1.17 PDB: 2ec5_A 2ebh_X*
PVClopT_17 PAK_2078 PAK_01882 2l1n 2l1n_A 52.8 5.3 0.00014 27.8 >2l1n_A Uncharacterized protein; DUF1823, hypothetical protein, cyanobacteria, structural GEN PSI-biology, protein structure initiative; NMR {Synechococcus elongatus}
PVCunit4_17 plu1651 PLT_01680 2yy0 2yy0_A 42.7 9.7 0.00025 26.4 >2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
PVCunit2_17 plu1692 PLT_01720 3ggm 3ggm_A 54.2 4.9 0.00013 26.2 >3ggm_A Uncharacterized protein BT9727_2919; bacillus cereus group., structural genomics, PSI-2, protein structure initiative; 2.00A {Bacillus thuringiensis serovarkonkukian}
PVCpnf_17 PAK_3527 PAK_03187 4ae8 4ae8_A 59.8 3.4 8.8e-05 27.4 >4ae8_A Thioesterase superfamily member 4; hydrolase, hotdog-fold; 1.59A {Homo sapiens} PDB: 4gah_A*
PVCcif_17 PAK_1985 PAK_01803 4fbj 4fbj_A 100.0 2.4e-91 6.3e-96 618.6 >4fbj_A CIF, hypothetical protein; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Photorhabdus luminescens subsp} PDB: 3gqj_A
PVCcif_17 PAU_02009 PAU_01977 4fbj 4fbj_A 100.0 4.2e-96 1e-100 648.7 >4fbj_A CIF, hypothetical protein; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Photorhabdus luminescens subsp} PDB: 3gqj_A
PVCcif_17 plu2515 PLT_02552 4fbj 4fbj_A 100.0 3e-109 7e-114 735.1 >4fbj_A CIF, hypothetical protein; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Photorhabdus luminescens subsp} PDB: 3gqj_A
PVClumt_17 PAU_02230 PAU_02189 4mix 4mix_A 100.0 6e-57 1.6e-61 486.1 >4mix_A Putative insecticidal toxin; tyrosine glycosylation, UDP-GLCNAC, nucleotide-binding domai rossmann-like, glycosyltransferase; HET: MSE UD1; 1.80A {Photorhabdus asymbiotica subsp}
PVCunit1_18 PAU_02806 PAU_02792 1t6u 1t6u_A 24.5 31 0.0008 28.1 >1t6u_A Superoxide dismutase [NI]; nickel, 4-helix bundle, hexamer, nisod, SOD, high resolution, oxidoreductase; 1.30A {Streptomyces coelicolor} SCOP: a.24.22.1 PDB: 1t6q_A 1t6i_A 3g4z_A 3g4x_A 4ncq_A 3g50_A 1q0g_A 1q0f_A 1q0d_A 1q0k_A 1q0m_A
PVClopT_18 PAK_2077 PAK_01881 1ukf 1ukf_A 99.8 2.5e-25 6.6e-30 187.7 >1ukf_A Avirulence protein AVRPPH3; AVRPPHB, hypersensitive response, hydrolase; 1.35A {Pseudomonas syringae PV} SCOP: d.3.1.10
PVClopT_18 plu2401 PLT_02440 1ukf 1ukf_A 99.8 1.6e-25 4.2e-30 188.8 >1ukf_A Avirulence protein AVRPPH3; AVRPPHB, hypersensitive response, hydrolase; 1.35A {Pseudomonas syringae PV} SCOP: d.3.1.10
PVCunit3_18 plu1672 PLT_01699 1wyp 1wyp_A 23.3 34 0.00088 25.8 >1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
PVCcif_18 PAU_02010 PAU_01978 2b9i 2b9i_C 28.4 24 0.00061 22.2 >2b9i_C MSG5, tyrosine-protein phosphatase MSG5; transferase; HET: ADP; 2.50A {Saccharomyces cerevisiae}
PVCunit1_18 plu1713 PLT_01741 2hwn 2hwn_E 27.0 26 0.00068 21.9 >2hwn_E A kinase binding peptide; PKA, AKAP, dimerization/docking, D/D, regulatory subunit, TR; 1.60A {Rattus norvegicus}
PVClopT_18 PAU_02097 PAU_02059 2jsp 2jsp_A 15.3 66.0 0.0017 24.7 >2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}
PVCpnf_18 PAK_3526 PAK_03186 3fxq 3fxq_A 99.7 2.7e-21 7e-26 122.2 >3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
PVCunit1_18 PAK_2893 PAK_02623 3mfx 3mfx_A 51.3 5.8 0.00015 23.5 >3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis}
PVCcif_18 PAK_1986 PAK_01804 3r2n 3r2n_A 31.0 20 0.00052 26.9 >3r2n_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.30A {Mycobacterium leprae}
PVCunit2_18 plu1691 PLT_01719 3u8p 3u8p_A 21.9 37.0 0.00097 31.6 >3u8p_A Cytochrome B562 integral fusion with enhanced GRE fluorescent protein; directed evolution, domain insertion, energy transfer, fluor quenching; HET: CRO HEM; 2.75A {Aequorea victoria}
PVCcif_18 plu2514 PLT_02551 3wmi 3wmi_B 20.6 41 0.0011 24.0 >3wmi_B EIAV GP45 wild type; alpha-helix, virus fusion, viral protein; 1.90A {Equine} PDB: 3wmj_B
PVClumt_18 PAK_2195 PAK_01994 4mix 4mix_A 100.0 8.9e-44 2.3e-48 348.7 >4mix_A Putative insecticidal toxin; tyrosine glycosylation, UDP-GLCNAC, nucleotide-binding domai rossmann-like, glycosyltransferase; HET: MSE UD1; 1.80A {Photorhabdus asymbiotica subsp}
PVCpnf_18 PAU_03336 PAU_03375 5g4d 5g4d_A 60.4 3.2 8.5e-05 23.4 >5g4d_A CAS2, crispr-associated endoribonuclease CAS2; immune system, cripsr-CAS complex, adaptation; 1.70A {Thermococcus onnurineus} PDB: 4tno_A 2i0x_A
PVClopT_19 PAK_2075 PAK_01880 1t3c 1t3c_A 93.5 0.0089 2.3e-07 65.9 >1t3c_A Neurotoxin type E; catalytic domain, E212Q mutant, light chain, hydrolase; 1.90A {Clostridium botulinum} SCOP: d.92.1.7 PDB: 3d3x_A 1t3a_A 1zl5_A 1zl6_A 1zn3_A 1zkw_A 1zkx_A
PVClopT_19 PAU_02096 PAU_02058 1ukf 1ukf_A 99.9 1.4e-26 3.8e-31 195.3 >1ukf_A Avirulence protein AVRPPH3; AVRPPHB, hypersensitive response, hydrolase; 1.35A {Pseudomonas syringae PV} SCOP: d.3.1.10
PVCunit1_19 plu1712 PLT_01740 1yrt 1yrt_A 98.1 2.8e-09 7.3e-14 98.9 >1yrt_A Bifunctional hemolysin-adenylate cyclase; CYAA, layse, toxin; 2.10A {Bordetella pertussis} PDB: 1yru_A 1zot_A* 2col_A
PVCunit3_19 plu1671 PLT_01698 2a7o 2a7o_A 21.3 39 0.001 26.3 >2a7o_A Huntingtin interacting protein B; SRI domain, SRI, HSRI, SET2, HSET2, phosphoctd associating protein, SET2 RPB1-interacting domain, PCID, PCAP; NMR {Homo sapiens}
PVCcif_19 PAU_02011 PAU_01979 2hxj 2hxj_A 61.1 3.1 8.1e-05 34.1 >2hxj_A Hypothetical protein; APC83807, structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.21A {Neisseria meningitidis MC58} SCOP: a.136.1.1 PDB: 3mw6_A
PVCunit2_19 plu1690 PLT_01718 2rio 2rio_A 79.3 0.6 1.6e-05 29.0 >2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*
PVCunit1_19 PAK_2894 PAK_02624 3fnb 3fnb_A 74.6 1.0 2.7e-05 35.5 >3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix bundle, structural genomics protein structure initiative; HET: PGE; 2.12A {Streptococcus mutans}
PVCpnf_19 PAU_03334 PAU_03374 3gqe 3gqe_A 62.7 2.7 7.2e-05 25.6 >3gqe_A Non-structural protein 3; macro domain, X domain, venezuelan equine encephalitis virus alphavirus; HET: BCN; 2.30A {Venezuelan equine encephalitis virus} PDB: 3gqo_A*
PVCunit1_19 PAU_02807 PAU_02793 3kx6 3kx6_A 19.7 45 0.0012 31.3 >3kx6_A Fructose-bisphosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, glycolysis, lyase, STRU genomics; HET: CIT; 2.10A {Babesia bovis}
PVCpnf_19 PAK_3525 PAK_03185 4mix 4mix_A 100.0 5e-35 1.3e-39 251.4 >4mix_A Putative insecticidal toxin; tyrosine glycosylation, UDP-GLCNAC, nucleotide-binding domai rossmann-like, glycosyltransferase; HET: MSE UD1; 1.80A {Photorhabdus asymbiotica subsp}
PVCcif_19 PAK_1987 PAK_01805 5ewy 5ewy_A 97.3 6.2e-07 1.6e-11 74.4 >5ewy_A Putative ADP-ribosyltransferase scabin; inhibitor, transferase-transferase inhibitor CO; HET: 5TQ; 1.40A {Streptomyces scabiei 87} PDB: 5ewk_A*
PVCunit1_20 PAK_2895 PAK_02625 1ocy 1ocy_A 97.2 1.6e-06 4.1e-11 65.1 >1ocy_A Bacteriophage T4 short tail fibre; structural protein, fibrous protein, LIPO-polysaccharide binding, bacteriophage structural protein; HET: CIT; 1.5A {Bacteriophage T4} SCOP: d.231.1.1
PVCunit1_20 PAU_02808 PAU_02794 1vyy 1vyy_A 99.9 8.9e-33 2.3e-37 218.9 >1vyy_A Lectin; sugar-binding protein, D-mannose, plant pathogen; HET: BMA MAN; 1.00A {Ralstonia solanacearum} PDB: 1uqx_A* 2chh_A*
PVCpnf_20 PAK_3524 PAK_03184 1xju 1xju_A 99.4 4.1e-17 1.1e-21 98.8 >1xju_A Lysozyme; secreted inactive conformation, hydrolase; 1.
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