cvtSpcToMsa.py

# cvtSpcToMsa.py
#
#   Date      Who  Comment
# ----------  ---  -----------------------------------------------
# 2017-02-01  JRM  Convert spc from a directory to to msa format


import sys
import os
import glob

import gov.nist.microanalysis.EPQLibrary as epq
import gov.nist.microanalysis.EPQLibrary.Detector as epd
import gov.nist.microanalysis.NISTMonte as nm
import gov.nist.microanalysis.EPQTools as et
import gov.nist.microanalysis.dtsa2 as dt2


import shutil
import time

import java.util as jutil
import java.io as jio
import string

bDisplayAll = True
bApplyDetector = True
detNam   = "FEI CM20UT EDAX-RTEM"  #  detector name
spcDir = '/path/to/spc'

# should not need to change below here...

det      = findDetector(detNam)
DataManager.clearSpectrumList()

for name in glob.glob(spcDir + '/*.spc'):
    name = name.replace('\\', '/') # I tested on Windows...
    bn = os.path.basename(name)
    print(bn)
    spc = wrap(readSpectrum(name))
    if bApplyDetector:
        sp = spc.getProperties()
        sp.setDetector(det)
    if bDisplayAll:
        display(spc)
    bn = bn.replace('spc', 'msa')
    outFil = spcDir + "/" + bn
    fos=jio.FileOutputStream(outFil)
    ept.WriteSpectrumAsEMSA1_0.write(spc,fos,ept.WriteSpectrumAsEMSA1_0.Mode.COMPATIBLE)
    fos.close()



print("Done!")