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Confidence interval simulation
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library("shiny") | |
library("ggplot2") | |
library("plyr") | |
norm_mean <- 0 | |
norm_sd <- 1 | |
##' Take sample from normal dist and calculate confidence interval for normal | |
smpl_mean_sample_ci <- function(n, p=0.95, pop_mean=0, pop_sd=1) { | |
smpl <- rnorm(n, norm_mean, norm_sd) | |
smpl_sd <- sd(smpl) | |
smpl_mean <- mean(smpl) | |
tailprob <- (1 - p) / 2 | |
q <- -qt(tailprob, df=(n - 1), lower.tail=TRUE) | |
se <- smpl_sd / sqrt(n) | |
ci <- data.frame(ci_lb = smpl_mean - q * se, | |
ci_ub = smpl_mean + q * se) | |
ci | |
} | |
shinyServer(function(input, output) { | |
sample_ci <- reactive({ | |
input$draw | |
mutate(rdply(input$nsamples, smpl_mean_sample_ci(input$smplsize, | |
input$confidence / 100)), | |
n = seq_len(input$nsamples), | |
contains_mean = ((0 > ci_lb) & (0 < ci_ub))) | |
}) | |
output$plot <- renderPlot({ | |
print(ggplot(sample_ci(), aes(x = n, ymin = ci_lb, ymax = ci_ub, | |
colour = contains_mean)) | |
+ geom_hline(xintercept = 0, colour="blue") | |
+ geom_linerange() | |
+ coord_flip() | |
+ scale_x_continuous("samples") | |
+ scale_y_continuous(sprintf("%d%% CI", input$confidence)) | |
+ scale_colour_manual(values = c("red", "black")) | |
+ theme(legend.position = "none", | |
axis.text.y = element_blank(), | |
axis.ticks.y = element_blank())) | |
}) | |
output$npct <- renderText({ | |
c("Percent of CI containing the population mean:", round(mean(sample_ci()$contains_mean) * 100, 2), "%") | |
}) | |
}) |
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library("shiny") | |
shinyUI(pageWithSidebar( | |
headerPanel("Confidence Intervals"), | |
sidebarPanel( | |
actionButton("draw", "Draw samples"), | |
numericInput("confidence", "Confidence (%):", 95, min = 1, max = 99, | |
step=1), | |
numericInput("smplsize", "Sample sizes:", 100, min = 2, max = 1000, | |
step=1), | |
numericInput("nsamples", "Number of samples:", 100, min = 1, max = 500, | |
step=1) | |
), | |
mainPanel( | |
textOutput("npct"), | |
plotOutput("plot"), | |
p("The population has a mean of 0 and a standard deviation of 1.", | |
"Intervals including the population mean are colored red, those not including the population mean are colored black") | |
))) |
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