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--Based in http://www.organognosi.com/export-skim-notes-according-to-their-highlight-colors/
--Modified with http://drosophiliac.com/2012/09/an-academic-notetaking-workflow.html
--Colors and codes changed.

tell application "Skim"
    set the clipboard to ""
    set numberOfPages to count pages of document 1
    activate
    set myColorCodes to my chooseColor()
    display dialog "Do you want to export all the notes or some of them?" buttons {"All", "Some"} default button 1

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(*
-- Initial dialogs for path and real page number.
-- 3 notes creation eliminated. It uses the 5 created beforehand with http://organognosi.blogspot.com.es/2011/03/how-to-create-correctly-skim-notes.html
-- Note numbers to retrieve info from is changed.
-- Colors and codes changed.

-- Stephen Margheim
-- 10/18/13
-- open source
https://gist.github.com/smargh/7046486

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// Use Gists to store code you would like to remember later on
console.log(window); // log the "window" object to the console

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--http://www.organognosi.com
tell application "Skim"
set colorMessage to ""
set pageNotes to notes of current page of document 1
repeat with pageNote in pageNotes
set noteColor to color of pageNote
set noteColorText to ""
repeat with codeColor in noteColor
set noteColorText to noteColorText & codeColor & " "
end repeat

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--http://www.organognosi.com
-- 2012-09-30
--it matches exact phrases using quotes and single words
--the locked files in DEVONthink are excluded from the search
--the index is created for the active DEVONthink database

tell application "DEVONthink Pro"
set searchWord to text returned of (display dialog "Enter the search word/phrase:" default answer "")
set searchWordList to every word of searchWord
set numberOfSearchWords to count searchWordList

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tell application "Google Chrome"
	tell front window
		set theClip to active tab execute javascript "(function(){clip = window.getSelection();
url = location.href;
var brackets = \"\\[\\[\";
var myDate = new Date();
var year = myDate.getFullYear();
var month = myDate.getMonth();
if(month < = 9)
	month = month + 1

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javascript:(function(){clip%20=%20window.getSelection();%20url%20=%20location.href;%20var%20currentdate%20=%20new%20Date();%20var%20weekdayNames%20=%20new%20Array("Sunday",%20"Monday",%20"Tuesday",%20"Wednesday",%20"Thursday",%20"Friday",%20"Sat");%20var%20weekday%20=%20weekdayNames[currentdate.getDay()];%20var%20brackets%20=%20"[[";%20%20var%20myDate%20=%20new%20Date();%20%20var%20year%20=%20myDate.getFullYear();%20var%20month%20=%20myDate.getMonth();%20if(month%20<=%209)%20%20%20%20%20month%20=%20'0'+month;%20var%20day=%20myDate.getDate();%20if(day%20<=%209)%20%20%20%20%20day%20=%20'0'+day;%20var%20prettyDate%20=%20year%20+'-'+%20month%20+'-'+%20day;%20var%20minutes%20=%20myDate.getMinutes();%20if(minutes%20<=%209)%20minutes%20=%20'0'%20+%20minutes;%20%20%20var%20hours%20=%20myDate.getHours();%20if(hours%20<=%209)%20hours%20=%20'0'%20+%20hours;%20%20%20theFinalString%20=%20clip%20+%20"%20("%20+%20url%20+%20"%20-%20"%20+%20brackets%20+%20prettyDate%20+%20"]]%20"%20+%20weekday%20+%20",%20"%20+%20hours%20+%20"

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 --2011-03-08
--http://organognosi.blogspot.com
--the script works only for one PDF file per time

tell application "DEVONthink Pro"
    set this_item to the content record of think window 1
    set RecordLink to the reference URL of this_item
    set DevonThinkLink to RecordLink & "?page=0"
    set PdfPath to get the path of this_item
    set PdfPath to (POSIX file PdfPath) as alias

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tell application "Skim"
    set FilePath to get the file of front document
    tell application "Finder"
        activate
        reveal FilePath
    end tell
end tell

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(**
--You need to adjust appropriately the name of the DEVONthink database  in the line:
    tell database "MySources"
**)

tell application "Skim"
    set the xDEVONthinkLink to (get text for note 4 of document 1) as string
    set customUUID to text 21 thru -8 of xDEVONthinkLink as string
end tell