dockerfile-jupyter-r

# Copied from the Jupter Development Team.
# Copyright (c) Jupyter Development Team.
# Distributed under the terms of the Modified BSD License.
ARG BASE_CONTAINER=jupyter/minimal-notebook
FROM $BASE_CONTAINER

LABEL maintainer="whosoever will"

USER root

# R pre-requisites
RUN apt-get update && \
    apt-get install -y --no-install-recommends \
    fonts-dejavu \
    unixodbc \
    unixodbc-dev \
    r-cran-rodbc \
    gfortran \
    gcc && \
    rm -rf /var/lib/apt/lists/*

# Fix for devtools https://github.com/conda-forge/r-devtools-feedstock/issues/4
RUN ln -s /bin/tar /bin/gtar

USER $NB_UID

# R packages
RUN conda install --quiet --yes \
    'r-base=3.6.2' \
    'r-caret=6.0*' \
    'r-crayon=1.3*' \
    'r-devtools=2.2*' \
    'r-forecast=8.11*' \
    'r-hexbin=1.28*' \
    'r-htmltools=0.4*' \
    'r-htmlwidgets=1.5*' \
    'r-irkernel=1.1*' \
    'r-nycflights13=1.0*' \
    'r-plyr=1.8*' \
    'r-randomforest=4.6*' \
    'r-rcurl=1.98*' \
    'r-reshape2=1.4*' \
    'r-rmarkdown=2.1*' \
    'r-rodbc=1.3*' \
    'r-rsqlite=2.1*' \
    'r-shiny=1.4*' \
    'r-tidyverse=1.3*' \
    'unixodbc=2.3.*' \
    && \
    conda clean --all -f -y && \
    fix-permissions $CONDA_DIR

# Install e1071 R package (dependency of the caret R package)
RUN conda install --quiet --yes r-e1071

ENV NB_PREFIX /

CMD ["sh","-c", "jupyter notebook --notebook-dir=/home/jovyan --ip=0.0.0.0 --no-browser --allow-root --port=8888 --NotebookApp.token='' --NotebookApp.password='' --NotebookApp.allow_origin='*' --NotebookApp.base_url=${NB_PREFIX}"]