Created
April 15, 2014 21:27
-
-
Save jtprince/10777351 to your computer and use it in GitHub Desktop.
Creates a gamma distribution peak, then adds noise in both x and y values. Writes out a CSV file and plots the thing.
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
#!/usr/bin/env ruby | |
require 'distribution' | |
require 'gnuplot' | |
require 'csv' | |
params = { | |
step: 0.01, | |
stop: 1.0, | |
xwiggle: 0.01, | |
ywiggle: 0.05, | |
gamma: [1,5], | |
} | |
params[:start] = params[:step] | |
class Float | |
# flat random within +/- delta | |
def wiggle(delta) | |
self - delta + (rand * (delta*2)) | |
end | |
end | |
pure_xvals = (params[:start]..params[:stop]).step(params[:step]).to_a | |
pure_yvals = pure_xvals.map {|v| Distribution::Gamma.pdf(*params[:gamma],v) } | |
(xvals, yvals) = [[pure_xvals, params[:xwiggle]], [pure_yvals, params[:ywiggle]]].map do |array, delta| | |
array.map {|v| v.wiggle(delta)} | |
end | |
xvals.sort! #ensure monotonic | |
CSV.open("fake_peak.csv", 'wb') do |csv| | |
csv << %w(pure_x pure_y noisy_x noisy_y) | |
[pure_xvals, pure_yvals, xvals, yvals].transpose.each do |array| | |
csv << array | |
end | |
end | |
Gnuplot.open do |gp| | |
Gnuplot::Plot.new(gp) do |plot| | |
plot.data << Gnuplot::DataSet.new([pure_xvals, pure_yvals]) do |ds| | |
ds.title = "original signal" | |
ds.with = "linespoints" | |
end | |
plot.data << Gnuplot::DataSet.new([xvals,yvals]) do |ds| | |
ds.title = "signal with noise" | |
ds.with = "points" | |
end | |
end | |
end |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment