Last active
December 23, 2015 13:29
-
-
Save juliantaylor/6642848 to your computer and use it in GitHub Desktop.
generalized axis support for arbitraryy funcions
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
import numpy as np | |
def ureduce(a, func=np.median, **kwargs): | |
a = np.asarray(a) | |
axis = kwargs.get('axis', None) | |
keepdims = kwargs.pop('keepdims', False) | |
if axis is not None: | |
keepdim = list(a.shape) | |
nd = a.ndim | |
if np.isscalar(axis): | |
if axis >= nd or axis < -nd: | |
raise IndexError("axis %d out of bounds (%d)" % (axis, a.ndim)) | |
keepdim[axis] = 1 | |
else: | |
sax = set() | |
for x in axis: | |
if x >= nd or x < -nd: | |
raise IndexError("axis %d out of bounds (%d)" % (x, nd)) | |
if x in sax: | |
raise ValueError("duplicate value in axis") | |
sax.add(x % nd) | |
keepdim[x] = 1 | |
keep = sax.symmetric_difference(frozenset(range(nd))) | |
nkeep = len(keep) | |
# swap axis that should not be reduced to front | |
for i, s in enumerate(sorted(keep)): | |
a = a.swapaxes(i, s) | |
# merge reduced axis | |
a = a.reshape(a.shape[:nkeep] + (np.prod(a.shape[nkeep:]),)) | |
kwargs['axis'] = -1 | |
else: | |
keepdim = [1] * a.ndim | |
r = func(a, **kwargs) | |
if keepdims: | |
return r.reshape(keepdim) | |
else: | |
return r | |
x = np.arange(3 * 4 * 5 * 6).reshape(3, 4, 5, 6) | |
print ureduce(x, func=np.percentile, q=(25,50), axis=(1,3)).shape | |
d = np.random.normal(size=(70,30)) | |
x = np.array([d] * 10) | |
print x.shape | |
r = ureduce(x, func=np.median, axis=(-2, -1)) | |
print r, r[0] | |
print np.median(d) | |
def median2(a, **kwargs): | |
return np.percentile(a, 50, **kwargs) | |
r = ureduce(x, func=median2, axis=(-2, -1)) | |
print r, r[0] | |
print np.median(d) |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment