Created
September 6, 2017 16:12
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intermine gradle flatmode delete failure
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Class org.intermine.objectstore.intermine.FlatModeObjectStoreInterMineImplTest | |
all > org.intermine.objectstore.intermine > FlatModeObjectStoreInterMineImplTest | |
45 | |
tests | |
1 | |
failures | |
0 | |
ignored | |
0.460s | |
duration | |
97% | |
successful | |
Failed tests | |
Tests | |
Standard output | |
classMethod | |
java.lang.RuntimeException: ObjectStore error has occurred (in get) | |
at org.intermine.objectstore.query.Results.get(Results.java:233) | |
at org.intermine.objectstore.query.Results$Iter.hasNext(Results.java:378) | |
at org.intermine.objectstore.ObjectStoreTestUtils.deleteAllObjectsInStore(ObjectStoreTestUtils.java:212) | |
at org.intermine.objectstore.ObjectStoreTestCase.oneTimeShutdown(ObjectStoreTestCase.java:53) | |
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) | |
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) | |
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) | |
at java.lang.reflect.Method.invoke(Method.java:498) | |
at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:44) | |
at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:15) | |
at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:41) | |
at org.junit.internal.runners.statements.RunAfters.evaluate(RunAfters.java:37) | |
at org.junit.runners.ParentRunner.run(ParentRunner.java:236) | |
at org.gradle.api.internal.tasks.testing.junit.JUnitTestClassExecuter.runTestClass(JUnitTestClassExecuter.java:114) | |
at org.gradle.api.internal.tasks.testing.junit.JUnitTestClassExecuter.execute(JUnitTestClassExecuter.java:57) | |
at org.gradle.api.internal.tasks.testing.junit.JUnitTestClassProcessor.processTestClass(JUnitTestClassProcessor.java:66) | |
at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.processTestClass(SuiteTestClassProcessor.java:51) | |
at sun.reflect.GeneratedMethodAccessor3.invoke(Unknown Source) | |
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) | |
at java.lang.reflect.Method.invoke(Method.java:498) | |
at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:35) | |
at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) | |
at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:32) | |
at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:93) | |
at com.sun.proxy.$Proxy1.processTestClass(Unknown Source) | |
at org.gradle.api.internal.tasks.testing.worker.TestWorker.processTestClass(TestWorker.java:109) | |
at sun.reflect.GeneratedMethodAccessor2.invoke(Unknown Source) | |
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) | |
at java.lang.reflect.Method.invoke(Method.java:498) | |
at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:35) | |
at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) | |
at org.gradle.internal.remote.internal.hub.MessageHubBackedObjectConnection$DispatchWrapper.dispatch(MessageHubBackedObjectConnection.java:146) | |
at org.gradle.internal.remote.internal.hub.MessageHubBackedObjectConnection$DispatchWrapper.dispatch(MessageHubBackedObjectConnection.java:128) | |
at org.gradle.internal.remote.internal.hub.MessageHub$Handler.run(MessageHub.java:404) | |
at org.gradle.internal.concurrent.ExecutorPolicy$CatchAndRecordFailures.onExecute(ExecutorPolicy.java:63) | |
at org.gradle.internal.concurrent.ManagedExecutorImpl$1.run(ManagedExecutorImpl.java:46) | |
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) | |
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) | |
at org.gradle.internal.concurrent.ThreadFactoryImpl$ManagedThreadRunnable.run(ThreadFactoryImpl.java:55) | |
at java.lang.Thread.run(Thread.java:745) | |
Caused by: org.intermine.objectstore.ObjectStoreException: Problem running SQL statement "SELECT a1_.id AS a1_id FROM InterMineObject AS a1_ ORDER BY a1_.id LIMIT 1000" while executing query "SELECT DISTINCT a1_ FROM org.intermine.model.InterMineObject AS a1_" | |
at org.intermine.objectstore.intermine.ObjectStoreInterMineImpl.executeWithConnection(ObjectStoreInterMineImpl.java:1335) | |
at org.intermine.objectstore.intermine.ObjectStoreInterMineImpl.executeWithConnection(ObjectStoreInterMineImpl.java:1131) | |
at org.intermine.objectstore.intermine.ObjectStoreInterMineImpl.execute(ObjectStoreInterMineImpl.java:1022) | |
at org.intermine.objectstore.query.ResultsBatches.fetchBatchFromObjectStore(ResultsBatches.java:193) | |
at org.intermine.objectstore.query.PrefetchManager.doRequest(PrefetchManager.java:241) | |
at org.intermine.objectstore.query.PrefetchManager.doRequest(PrefetchManager.java:146) | |
at org.intermine.objectstore.query.ResultsBatches.getBatch(ResultsBatches.java:164) | |
at org.intermine.objectstore.query.ResultsBatches.getRowsFromBatch(ResultsBatches.java:139) | |
at org.intermine.objectstore.query.Results.range(Results.java:197) | |
at org.intermine.objectstore.query.SingletonResults.range(SingletonResults.java:65) | |
at org.intermine.objectstore.query.Results.get(Results.java:226) | |
... 39 more | |
Caused by: java.sql.SQLException: Error running query "explain SELECT a1_.id AS a1_id FROM InterMineObject AS a1_ ORDER BY a1_.id LIMIT 1000" | |
at org.intermine.sql.query.PostgresExplainResult.<init>(PostgresExplainResult.java:78) | |
at org.intermine.sql.query.ExplainResult.getInstance(ExplainResult.java:49) | |
at org.intermine.objectstore.intermine.ObjectStoreInterMineImpl.executeWithConnection(ObjectStoreInterMineImpl.java:1202) | |
... 49 more | |
Caused by: org.postgresql.util.PSQLException: ERROR: relation "intermineobject" does not exist | |
Position: 37 | |
at org.postgresql.core.v3.QueryExecutorImpl.receiveErrorResponse(QueryExecutorImpl.java:2455) | |
at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:2155) | |
at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:288) | |
at org.postgresql.jdbc.PgStatement.executeInternal(PgStatement.java:430) | |
at org.postgresql.jdbc.PgStatement.execute(PgStatement.java:356) | |
at org.postgresql.jdbc.PgStatement.executeWithFlags(PgStatement.java:303) | |
at org.postgresql.jdbc.PgStatement.executeCachedSql(PgStatement.java:289) | |
at org.postgresql.jdbc.PgStatement.executeWithFlags(PgStatement.java:266) | |
at org.postgresql.jdbc.PgStatement.execute(PgStatement.java:262) | |
at com.zaxxer.hikari.proxy.StatementProxy.execute(StatementProxy.java:83) | |
at com.zaxxer.hikari.proxy.StatementJavassistProxy.execute(StatementJavassistProxy.java) | |
at org.intermine.sql.query.PostgresExplainResult.<init>(PostgresExplainResult.java:74) | |
... 51 more | |
Wrap lines | |
Generated by Gradle 4.1 at 06-Sep-2017 17:06:53 | |
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