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@justinccdev
Created September 6, 2017 16:12
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intermine gradle flatmode delete failure
Class org.intermine.objectstore.intermine.FlatModeObjectStoreInterMineImplTest
all > org.intermine.objectstore.intermine > FlatModeObjectStoreInterMineImplTest
45
tests
1
failures
0
ignored
0.460s
duration
97%
successful
Failed tests
Tests
Standard output
classMethod
java.lang.RuntimeException: ObjectStore error has occurred (in get)
at org.intermine.objectstore.query.Results.get(Results.java:233)
at org.intermine.objectstore.query.Results$Iter.hasNext(Results.java:378)
at org.intermine.objectstore.ObjectStoreTestUtils.deleteAllObjectsInStore(ObjectStoreTestUtils.java:212)
at org.intermine.objectstore.ObjectStoreTestCase.oneTimeShutdown(ObjectStoreTestCase.java:53)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:44)
at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:15)
at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:41)
at org.junit.internal.runners.statements.RunAfters.evaluate(RunAfters.java:37)
at org.junit.runners.ParentRunner.run(ParentRunner.java:236)
at org.gradle.api.internal.tasks.testing.junit.JUnitTestClassExecuter.runTestClass(JUnitTestClassExecuter.java:114)
at org.gradle.api.internal.tasks.testing.junit.JUnitTestClassExecuter.execute(JUnitTestClassExecuter.java:57)
at org.gradle.api.internal.tasks.testing.junit.JUnitTestClassProcessor.processTestClass(JUnitTestClassProcessor.java:66)
at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.processTestClass(SuiteTestClassProcessor.java:51)
at sun.reflect.GeneratedMethodAccessor3.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:35)
at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24)
at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:32)
at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:93)
at com.sun.proxy.$Proxy1.processTestClass(Unknown Source)
at org.gradle.api.internal.tasks.testing.worker.TestWorker.processTestClass(TestWorker.java:109)
at sun.reflect.GeneratedMethodAccessor2.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:35)
at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24)
at org.gradle.internal.remote.internal.hub.MessageHubBackedObjectConnection$DispatchWrapper.dispatch(MessageHubBackedObjectConnection.java:146)
at org.gradle.internal.remote.internal.hub.MessageHubBackedObjectConnection$DispatchWrapper.dispatch(MessageHubBackedObjectConnection.java:128)
at org.gradle.internal.remote.internal.hub.MessageHub$Handler.run(MessageHub.java:404)
at org.gradle.internal.concurrent.ExecutorPolicy$CatchAndRecordFailures.onExecute(ExecutorPolicy.java:63)
at org.gradle.internal.concurrent.ManagedExecutorImpl$1.run(ManagedExecutorImpl.java:46)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at org.gradle.internal.concurrent.ThreadFactoryImpl$ManagedThreadRunnable.run(ThreadFactoryImpl.java:55)
at java.lang.Thread.run(Thread.java:745)
Caused by: org.intermine.objectstore.ObjectStoreException: Problem running SQL statement "SELECT a1_.id AS a1_id FROM InterMineObject AS a1_ ORDER BY a1_.id LIMIT 1000" while executing query "SELECT DISTINCT a1_ FROM org.intermine.model.InterMineObject AS a1_"
at org.intermine.objectstore.intermine.ObjectStoreInterMineImpl.executeWithConnection(ObjectStoreInterMineImpl.java:1335)
at org.intermine.objectstore.intermine.ObjectStoreInterMineImpl.executeWithConnection(ObjectStoreInterMineImpl.java:1131)
at org.intermine.objectstore.intermine.ObjectStoreInterMineImpl.execute(ObjectStoreInterMineImpl.java:1022)
at org.intermine.objectstore.query.ResultsBatches.fetchBatchFromObjectStore(ResultsBatches.java:193)
at org.intermine.objectstore.query.PrefetchManager.doRequest(PrefetchManager.java:241)
at org.intermine.objectstore.query.PrefetchManager.doRequest(PrefetchManager.java:146)
at org.intermine.objectstore.query.ResultsBatches.getBatch(ResultsBatches.java:164)
at org.intermine.objectstore.query.ResultsBatches.getRowsFromBatch(ResultsBatches.java:139)
at org.intermine.objectstore.query.Results.range(Results.java:197)
at org.intermine.objectstore.query.SingletonResults.range(SingletonResults.java:65)
at org.intermine.objectstore.query.Results.get(Results.java:226)
... 39 more
Caused by: java.sql.SQLException: Error running query "explain SELECT a1_.id AS a1_id FROM InterMineObject AS a1_ ORDER BY a1_.id LIMIT 1000"
at org.intermine.sql.query.PostgresExplainResult.<init>(PostgresExplainResult.java:78)
at org.intermine.sql.query.ExplainResult.getInstance(ExplainResult.java:49)
at org.intermine.objectstore.intermine.ObjectStoreInterMineImpl.executeWithConnection(ObjectStoreInterMineImpl.java:1202)
... 49 more
Caused by: org.postgresql.util.PSQLException: ERROR: relation "intermineobject" does not exist
Position: 37
at org.postgresql.core.v3.QueryExecutorImpl.receiveErrorResponse(QueryExecutorImpl.java:2455)
at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:2155)
at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:288)
at org.postgresql.jdbc.PgStatement.executeInternal(PgStatement.java:430)
at org.postgresql.jdbc.PgStatement.execute(PgStatement.java:356)
at org.postgresql.jdbc.PgStatement.executeWithFlags(PgStatement.java:303)
at org.postgresql.jdbc.PgStatement.executeCachedSql(PgStatement.java:289)
at org.postgresql.jdbc.PgStatement.executeWithFlags(PgStatement.java:266)
at org.postgresql.jdbc.PgStatement.execute(PgStatement.java:262)
at com.zaxxer.hikari.proxy.StatementProxy.execute(StatementProxy.java:83)
at com.zaxxer.hikari.proxy.StatementJavassistProxy.execute(StatementJavassistProxy.java)
at org.intermine.sql.query.PostgresExplainResult.<init>(PostgresExplainResult.java:74)
... 51 more
Wrap lines
Generated by Gradle 4.1 at 06-Sep-2017 17:06:53
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