chef-provisioning

chef-client output

 Starting Chef Client, version 12.0.3
 resolving cookbooks for run list: ["chef-client", "chef-client::delete_validation", "provisioning"]
 Synchronizing Cookbooks:
   - cron
   - logrotate
   - windows
   - chef_handler
   - provisioning
   - chef-client
 Compiling Cookbooks...
 Recipe: provisioning::default
   * chef_gem[chef-provisioning] action install
     
     ================================================================================
     Error executing action `install` on resource 'chef_gem[chef-provisioning]'
     ================================================================================
     
     Mixlib::ShellOut::ShellCommandFailed
     ------------------------------------
     Expected process to exit with [0], but received '1'
     ---- Begin output of /opt/chef/embedded/bin/gem install chef-provisioning -q --no-rdoc --no-ri -v "0.18" ----
     STDOUT: Building native extensions.  This could take a while...
     STDERR: ERROR:  Error installing chef-provisioning:
     	ERROR: Failed to build gem native extension.
     
         /opt/chef/embedded/bin/ruby -r ./siteconf20150225-30027-hbn8k9.rb extconf.rb
     checking if the C compiler accepts ... yes
     Building nokogiri using packaged libraries.
     checking for gzdopen() in -lz... yes
     checking for iconv using --with-opt-* flags... yes
     ************************************************************************
     IMPORTANT NOTICE:
     
     Building Nokogiri with a packaged version of libxml2-2.9.2
     with the following patches applied:
     	- 0001-Revert-Missing-initialization-for-the-catalog-module.patch
     	- 0002-Fix-missing-entities-after-CVE-2014-3660-fix.patch
     
     Team Nokogiri will keep on doing their best to provide security
     updates in a timely manner, but if this is a concern for you and want
     to use the system library instead; abort this installation process and
     reinstall nokogiri as follows:
     
         gem install nokogiri -- --use-system-libraries
             [--with-xml2-config=/path/to/xml2-config]
             [--with-xslt-config=/path/to/xslt-config]
     
     If you are using Bundler, tell it to use the option:
     
         bundle config build.nokogiri --use-system-libraries
         bundle install
     
     Note, however, that nokogiri is not fully compatible with arbitrary
     versions of libxml2 provided by OS/package vendors.
     ************************************************************************
     Extracting libxml2-2.9.2.tar.gz into tmp/x86_64-unknown-linux-gnu/ports/libxml2/2.9.2... OK
     Running patch with /opt/chef/embedded/lib/ruby/gems/2.1.0/gems/nokogiri-1.6.6.2/ports/patches/libxml2/0001-Revert-Missing-initialization-for-the-catalog-module.patch...
     Running 'patch' for libxml2 2.9.2... OK
     Running patch with /opt/chef/embedded/lib/ruby/gems/2.1.0/gems/nokogiri-1.6.6.2/ports/patches/libxml2/0002-Fix-missing-entities-after-CVE-2014-3660-fix.patch...
     Running 'patch' for libxml2 2.9.2... OK
     Running 'configure' for libxml2 2.9.2... OK
     Running 'compile' for libxml2 2.9.2... ERROR, review '/opt/chef/embedded/lib/ruby/gems/2.1.0/gems/nokogiri-1.6.6.2/ext/nokogiri/tmp/x86_64-unknown-linux-gnu/ports/libxml2/2.9.2/compile.log' to see what happened.
     *** extconf.rb failed ***
     Could not create Makefile due to some reason, probably lack of necessary
     libraries and/or headers.  Check the mkmf.log file for more details.  You may
     need configuration options.
     
     Provided configuration options:
     	--with-opt-dir
     	--with-opt-include
     	--without-opt-include=${opt-dir}/include
     	--with-opt-lib
     	--without-opt-lib=${opt-dir}/lib
     	--with-make-prog
     	--without-make-prog
     	--srcdir=.
     	--curdir
     	--ruby=/opt/chef/embedded/bin/ruby
     	--help
     	--clean
     	--use-system-libraries
     	--enable-static
     	--disable-static
     	--with-zlib-dir
     	--without-zlib-dir
     	--with-zlib-include
     	--without-zlib-include=${zlib-dir}/include
     	--with-zlib-lib
     	--without-zlib-lib=${zlib-dir}/lib
     	--enable-cross-build
     	--disable-cross-build
     /opt/chef/embedded/lib/ruby/gems/2.1.0/gems/mini_portile-0.6.2/lib/mini_portile.rb:279:in `block in execute': Failed to complete compile task (RuntimeError)
     	from /opt/chef/embedded/lib/ruby/gems/2.1.0/gems/mini_portile-0.6.2/lib/mini_portile.rb:271:in `chdir'
     	from /opt/chef/embedded/lib/ruby/gems/2.1.0/gems/mini_portile-0.6.2/lib/mini_portile.rb:271:in `execute'
     	from /opt/chef/embedded/lib/ruby/gems/2.1.0/gems/mini_portile-0.6.2/lib/mini_portile.rb:70:in `compile'
     	from /opt/chef/embedded/lib/ruby/gems/2.1.0/gems/mini_portile-0.6.2/lib/mini_portile.rb:110:in `cook'
     	from extconf.rb:278:in `block in process_recipe'
     	from extconf.rb:177:in `tap'
     	from extconf.rb:177:in `process_recipe'
     	from extconf.rb:475:in `<main>'
     
     extconf failed, exit code 1
     
     Gem files will remain installed in /opt/chef/embedded/lib/ruby/gems/2.1.0/gems/nokogiri-1.6.6.2 for inspection.
     Results logged to /opt/chef/embedded/lib/ruby/gems/2.1.0/extensions/x86_64-linux/2.1.0/nokogiri-1.6.6.2/gem_make.out
     ---- End output of /opt/chef/embedded/bin/gem install chef-provisioning -q --no-rdoc --no-ri -v "0.18" ----
     Ran /opt/chef/embedded/bin/gem install chef-provisioning -q --no-rdoc --no-ri -v "0.18" returned 1
     
     Cookbook Trace:
     ---------------
     /var/chef/cache/cookbooks/provisioning/recipes/default.rb:20:in `from_file'
     
     Resource Declaration:
     ---------------------
     # In /var/chef/cache/cookbooks/provisioning/recipes/default.rb
     
      20: chef_gem 'chef-provisioning' do
      21: 	action :install
      22: end
      23: 
     
     Compiled Resource:
     ------------------
     # Declared in /var/chef/cache/cookbooks/provisioning/recipes/default.rb:20:in `from_file'
     
     chef_gem("chef-provisioning") do
       action [:install]
       retries 0
       retry_delay 2
       default_guard_interpreter :default
       package_name "chef-provisioning"
       version "0.18"
       timeout 900
       gem_binary "/opt/chef/embedded/bin/gem"
       declared_type :chef_gem
       cookbook_name "provisioning"
       recipe_name "default"
     end
     
   
   ================================================================================
   Recipe Compile Error in /var/chef/cache/cookbooks/provisioning/recipes/default.rb
   ================================================================================
   
   Mixlib::ShellOut::ShellCommandFailed
   ------------------------------------
   chef_gem[chef-provisioning] (provisioning::default line 20) had an error: Mixlib::ShellOut::ShellCommandFailed: Expected process to exit with [0], but received '1'
   ---- Begin output of /opt/chef/embedded/bin/gem install chef-provisioning -q --no-rdoc --no-ri -v "0.18" ----
   STDOUT: Building native extensions.  This could take a while...
   STDERR: ERROR:  Error installing chef-provisioning:
   	ERROR: Failed to build gem native extension.
   
       /opt/chef/embedded/bin/ruby -r ./siteconf20150225-30027-hbn8k9.rb extconf.rb
   checking if the C compiler accepts ... yes
   Building nokogiri using packaged libraries.
   checking for gzdopen() in -lz... yes
   checking for iconv using --with-opt-* flags... yes
   ************************************************************************
   IMPORTANT NOTICE:
   
   Building Nokogiri with a packaged version of libxml2-2.9.2
   with the following patches applied:
   	- 0001-Revert-Missing-initialization-for-the-catalog-module.patch
   	- 0002-Fix-missing-entities-after-CVE-2014-3660-fix.patch
   
   Team Nokogiri will keep on doing their best to provide security
   updates in a timely manner, but if this is a concern for you and want
   to use the system library instead; abort this installation process and
   reinstall nokogiri as follows:
   
       gem install nokogiri -- --use-system-libraries
           [--with-xml2-config=/path/to/xml2-config]
           [--with-xslt-config=/path/to/xslt-config]
   
   If you are using Bundler, tell it to use the option:
   
       bundle config build.nokogiri --use-system-libraries
       bundle install
   
   Note, however, that nokogiri is not fully compatible with arbitrary
   versions of libxml2 provided by OS/package vendors.
   ************************************************************************
   Extracting libxml2-2.9.2.tar.gz into tmp/x86_64-unknown-linux-gnu/ports/libxml2/2.9.2... OK
   Running patch with /opt/chef/embedded/lib/ruby/gems/2.1.0/gems/nokogiri-1.6.6.2/ports/patches/libxml2/0001-Revert-Missing-initialization-for-the-catalog-module.patch...
   Running 'patch' for libxml2 2.9.2... OK
   Running patch with /opt/chef/embedded/lib/ruby/gems/2.1.0/gems/nokogiri-1.6.6.2/ports/patches/libxml2/0002-Fix-missing-entities-after-CVE-2014-3660-fix.patch...
   Running 'patch' for libxml2 2.9.2... OK
   Running 'configure' for libxml2 2.9.2... OK
   Running 'compile' for libxml2 2.9.2... ERROR, review '/opt/chef/embedded/lib/ruby/gems/2.1.0/gems/nokogiri-1.6.6.2/ext/nokogiri/tmp/x86_64-unknown-linux-gnu/ports/libxml2/2.9.2/compile.log' to see what happened.
   *** extconf.rb failed ***
   Could not create Makefile due to some reason, probably lack of necessary
   libraries and/or headers.  Check the mkmf.log file for more details.  You may
   need configuration options.
   
   Provided configuration options:
   	--with-opt-dir
   	--with-opt-include
   	--without-opt-include=${opt-dir}/include
   	--with-opt-lib
   	--without-opt-lib=${opt-dir}/lib
   	--with-make-prog
   	--without-make-prog
   	--srcdir=.
   	--curdir
   	--ruby=/opt/chef/embedded/bin/ruby
   	--help
   	--clean
   	--use-system-libraries
   	--enable-static
   	--disable-static
   	--with-zlib-dir
   	--without-zlib-dir
   	--with-zlib-include
   	--without-zlib-include=${zlib-dir}/include
   	--with-zlib-lib
   	--without-zlib-lib=${zlib-dir}/lib
   	--enable-cross-build
   	--disable-cross-build
   /opt/chef/embedded/lib/ruby/gems/2.1.0/gems/mini_portile-0.6.2/lib/mini_portile.rb:279:in `block in execute': Failed to complete compile task (RuntimeError)
   	from /opt/chef/embedded/lib/ruby/gems/2.1.0/gems/mini_portile-0.6.2/lib/mini_portile.rb:271:in `chdir'
   	from /opt/chef/embedded/lib/ruby/gems/2.1.0/gems/mini_portile-0.6.2/lib/mini_portile.rb:271:in `execute'
   	from /opt/chef/embedded/lib/ruby/gems/2.1.0/gems/mini_portile-0.6.2/lib/mini_portile.rb:70:in `compile'
   	from /opt/chef/embedded/lib/ruby/gems/2.1.0/gems/mini_portile-0.6.2/lib/mini_portile.rb:110:in `cook'
   	from extconf.rb:278:in `block in process_recipe'
   	from extconf.rb:177:in `tap'
   	from extconf.rb:177:in `process_recipe'
   	from extconf.rb:475:in `<main>'
   
   extconf failed, exit code 1
   
   Gem files will remain installed in /opt/chef/embedded/lib/ruby/gems/2.1.0/gems/nokogiri-1.6.6.2 for inspection.
   Results logged to /opt/chef/embedded/lib/ruby/gems/2.1.0/extensions/x86_64-linux/2.1.0/nokogiri-1.6.6.2/gem_make.out
   ---- End output of /opt/chef/embedded/bin/gem install chef-provisioning -q --no-rdoc --no-ri -v "0.18" ----
   Ran /opt/chef/embedded/bin/gem install chef-provisioning -q --no-rdoc --no-ri -v "0.18" returned 1
   
   Cookbook Trace:
   ---------------
     /var/chef/cache/cookbooks/provisioning/recipes/default.rb:20:in `from_file'
   
   Relevant File Content:
   ----------------------
   /var/chef/cache/cookbooks/provisioning/recipes/default.rb:
   
    13:  # Unless required by applicable law or agreed to in writing, software
    14:  # distributed under the License is distributed on an "AS IS" BASIS,
    15:  # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
    16:  # See the License for the specific language governing permissions and
    17:  # limitations under the License.
    18:  #
    19:  
    20>> chef_gem 'chef-provisioning' do
    21:  	action :install
    22:  end
    23:  
    24:  require 'chef/provisioning'
    25:  
   
   
   Running handlers:
 [2015-02-25T19:47:06+00:00] ERROR: Running exception handlers
   Running handlers complete
 [2015-02-25T19:47:06+00:00] ERROR: Exception handlers complete
 [2015-02-25T19:47:06+00:00] FATAL: Stacktrace dumped to /var/chef/cache/chef-stacktrace.out
   Chef Client failed. 0 resources updated in 24.621952497 seconds
 [2015-02-25T19:47:07+00:00] ERROR: chef_gem[chef-provisioning] (provisioning::default line 20) had an error: Mixlib::ShellOut::ShellCommandFailed: Expected process to exit with [0], but received '1'
 ---- Begin output of /opt/chef/embedded/bin/gem install chef-provisioning -q --no-rdoc --no-ri -v "0.18" ----
 STDOUT: Building native extensions.  This could take a while...
 STDERR: ERROR:  Error installing chef-provisioning:
 	ERROR: Failed to build gem native extension.
 
     /opt/chef/embedded/bin/ruby -r ./siteconf20150225-30027-hbn8k9.rb extconf.rb
 checking if the C compiler accepts ... yes
 Building nokogiri using packaged libraries.
 checking for gzdopen() in -lz... yes
 checking for iconv using --with-opt-* flags... yes
 ************************************************************************
 IMPORTANT NOTICE:
 
 Building Nokogiri with a packaged version of libxml2-2.9.2
 with the following patches applied:
 	- 0001-Revert-Missing-initialization-for-the-catalog-module.patch
 	- 0002-Fix-missing-entities-after-CVE-2014-3660-fix.patch
 
 Team Nokogiri will keep on doing their best to provide security
 updates in a timely manner, but if this is a concern for you and want
 to use the system library instead; abort this installation process and
 reinstall nokogiri as follows:
 
     gem install nokogiri -- --use-system-libraries
         [--with-xml2-config=/path/to/xml2-config]
         [--with-xslt-config=/path/to/xslt-config]
 
 If you are using Bundler, tell it to use the option:
 
     bundle config build.nokogiri --use-system-libraries
     bundle install
 
 Note, however, that nokogiri is not fully compatible with arbitrary
 versions of libxml2 provided by OS/package vendors.
 ************************************************************************
 Extracting libxml2-2.9.2.tar.gz into tmp/x86_64-unknown-linux-gnu/ports/libxml2/2.9.2... OK
 Running patch with /opt/chef/embedded/lib/ruby/gems/2.1.0/gems/nokogiri-1.6.6.2/ports/patches/libxml2/0001-Revert-Missing-initialization-for-the-catalog-module.patch...
 Running 'patch' for libxml2 2.9.2... OK
 Running patch with /opt/chef/embedded/lib/ruby/gems/2.1.0/gems/nokogiri-1.6.6.2/ports/patches/libxml2/0002-Fix-missing-entities-after-CVE-2014-3660-fix.patch...
 Running 'patch' for libxml2 2.9.2... OK
 Running 'configure' for libxml2 2.9.2... OK
 Running 'compile' for libxml2 2.9.2... ERROR, review '/opt/chef/embedded/lib/ruby/gems/2.1.0/gems/nokogiri-1.6.6.2/ext/nokogiri/tmp/x86_64-unknown-linux-gnu/ports/libxml2/2.9.2/compile.log' to see what happened.
 *** extconf.rb failed ***
 Could not create Makefile due to some reason, probably lack of necessary
 libraries and/or headers.  Check the mkmf.log file for more details.  You may
 need configuration options.
 
 Provided configuration options:
 	--with-opt-dir
 	--with-opt-include
 	--without-opt-include=${opt-dir}/include
 	--with-opt-lib
 	--without-opt-lib=${opt-dir}/lib
 	--with-make-prog
 	--without-make-prog
 	--srcdir=.
 	--curdir
 	--ruby=/opt/chef/embedded/bin/ruby
 	--help
 	--clean
 	--use-system-libraries
 	--enable-static
 	--disable-static
 	--with-zlib-dir
 	--without-zlib-dir
 	--with-zlib-include
 	--without-zlib-include=${zlib-dir}/include
 	--with-zlib-lib
 	--without-zlib-lib=${zlib-dir}/lib
 	--enable-cross-build
 	--disable-cross-build
 /opt/chef/embedded/lib/ruby/gems/2.1.0/gems/mini_portile-0.6.2/lib/mini_portile.rb:279:in `block in execute': Failed to complete compile task (RuntimeError)
 	from /opt/chef/embedded/lib/ruby/gems/2.1.0/gems/mini_portile-0.6.2/lib/mini_portile.rb:271:in `chdir'
 	from /opt/chef/embedded/lib/ruby/gems/2.1.0/gems/mini_portile-0.6.2/lib/mini_portile.rb:271:in `execute'
 	from /opt/chef/embedded/lib/ruby/gems/2.1.0/gems/mini_portile-0.6.2/lib/mini_portile.rb:70:in `compile'
 	from /opt/chef/embedded/lib/ruby/gems/2.1.0/gems/mini_portile-0.6.2/lib/mini_portile.rb:110:in `cook'
 	from extconf.rb:278:in `block in process_recipe'
 	from extconf.rb:177:in `tap'
 	from extconf.rb:177:in `process_recipe'
 	from extconf.rb:475:in `<main>'
 
 extconf failed, exit code 1
 
 Gem files will remain installed in /opt/chef/embedded/lib/ruby/gems/2.1.0/gems/nokogiri-1.6.6.2 for inspection.
 Results logged to /opt/chef/embedded/lib/ruby/gems/2.1.0/extensions/x86_64-linux/2.1.0/nokogiri-1.6.6.2/gem_make.out
 ---- End output of /opt/chef/embedded/bin/gem install chef-provisioning -q --no-rdoc --no-ri -v "0.18" ----
 Ran /opt/chef/embedded/bin/gem install chef-provisioning -q --no-rdoc --no-ri -v "0.18" returned 1
 [2015-02-25T19:47:07+00:00] FATAL: Chef::Exceptions::ChildConvergeError: Chef run process exited unsuccessfully (exit code 1)

compile output

 make  all-recursive
 make[1]: Entering directory `/opt/chef/embedded/lib/ruby/gems/2.1.0/gems/nokogiri-1.6.6.2/ext/nokogiri/tmp/x86_64-unknown-linux-gnu/ports/libxml2/2.9.2/libxml2-2.9.2'
 Making all in include
 make[2]: Entering directory `/opt/chef/embedded/lib/ruby/gems/2.1.0/gems/nokogiri-1.6.6.2/ext/nokogiri/tmp/x86_64-unknown-linux-gnu/ports/libxml2/2.9.2/libxml2-2.9.2/include'
 Making all in libxml
 make[3]: Entering directory `/opt/chef/embedded/lib/ruby/gems/2.1.0/gems/nokogiri-1.6.6.2/ext/nokogiri/tmp/x86_64-unknown-linux-gnu/ports/libxml2/2.9.2/libxml2-2.9.2/include/libxml'
 make[3]: Nothing to be done for `all'.
 make[3]: Leaving directory `/opt/chef/embedded/lib/ruby/gems/2.1.0/gems/nokogiri-1.6.6.2/ext/nokogiri/tmp/x86_64-unknown-linux-gnu/ports/libxml2/2.9.2/libxml2-2.9.2/include/libxml'
 make[3]: Entering directory `/opt/chef/embedded/lib/ruby/gems/2.1.0/gems/nokogiri-1.6.6.2/ext/nokogiri/tmp/x86_64-unknown-linux-gnu/ports/libxml2/2.9.2/libxml2-2.9.2/include'
 make[3]: Nothing to be done for `all-am'.
 make[3]: Leaving directory `/opt/chef/embedded/lib/ruby/gems/2.1.0/gems/nokogiri-1.6.6.2/ext/nokogiri/tmp/x86_64-unknown-linux-gnu/ports/libxml2/2.9.2/libxml2-2.9.2/include'
 make[2]: Leaving directory `/opt/chef/embedded/lib/ruby/gems/2.1.0/gems/nokogiri-1.6.6.2/ext/nokogiri/tmp/x86_64-unknown-linux-gnu/ports/libxml2/2.9.2/libxml2-2.9.2/include'
 Making all in .
 make[2]: Entering directory `/opt/chef/embedded/lib/ruby/gems/2.1.0/gems/nokogiri-1.6.6.2/ext/nokogiri/tmp/x86_64-unknown-linux-gnu/ports/libxml2/2.9.2/libxml2-2.9.2'
   CC       SAX.lo
   CC       entities.lo
   CC       encoding.lo
   CC       error.lo
   CC       parserInternals.lo
   CC       parser.lo
   CC       tree.lo
   CC       hash.lo
   CC       list.lo
   CC       xmlIO.lo
   CC       xmlmemory.lo
   CC       uri.lo
   CC       valid.lo
   CC       xlink.lo
   CC       HTMLparser.lo
   CC       HTMLtree.lo
   CC       debugXML.lo
   CC       xpath.lo
 xpath.c: In function ‘xmlXPathRegisterFuncNS’:
 xpath.c:4875:5: warning: ISO C forbids passing argument 4 of ‘xmlHashAddEntry2’ between function pointer and ‘void *’ [-Wpedantic]
      return(xmlHashAddEntry2(ctxt->funcHash, name, ns_uri, XML_CAST_FPTR(f)));
      ^
 In file included from ./include/libxml/parser.h:18:0,
                  from ./include/libxml/globals.h:18,
                  from ./include/libxml/threads.h:35,
                  from ./include/libxml/xmlmemory.h:218,
                  from xpath.c:38:
 ./include/libxml/hash.h:128:4: note: expected ‘void *’ but argument is of type ‘xmlXPathFunction’
     xmlHashAddEntry2(xmlHashTablePtr table,
     ^
 xpath.c: In function ‘xmlXPathFunctionLookupNS’:
 xpath.c:4956:24: warning: ISO C forbids assignment between function pointer and ‘void *’ [-Wpedantic]
      XML_CAST_FPTR(ret) = xmlHashLookup2(ctxt->funcHash, name, ns_uri);
                         ^
 xpath.c: In function ‘xmlXPathCompOpEval’:
 xpath.c:13552:41: warning: ISO C forbids assignment between function pointer and ‘void *’ [-Wpedantic]
                      XML_CAST_FPTR(func) = op->cache;
                                          ^
 xpath.c:13579:31: warning: ISO C forbids assignment between function pointer and ‘void *’ [-Wpedantic]
                      op->cache = XML_CAST_FPTR(func);
                                ^
 In file included from xpath.c:476:0:
 xpath.c: At top level:
 trionan.c:218:1: warning: ‘trio_is_negative’ defined but not used [-Wunused-function]
  trio_is_negative
  ^
   CC       xpointer.lo
   CC       xinclude.lo
   CC       nanohttp.lo
   CC       nanoftp.lo
   CC       catalog.lo
   CC       globals.lo
   CC       threads.lo
 threads.c:53:12: warning: redundant redeclaration of ‘pthread_once’ [-Wredundant-decls]
  extern int pthread_once (pthread_once_t *__once_control,
             ^
 In file included from threads.c:28:0:
 /usr/include/pthread.h:485:12: note: previous declaration of ‘pthread_once’ was here
  extern int pthread_once (pthread_once_t *__once_control,
             ^
 threads.c:56:14: warning: redundant redeclaration of ‘pthread_getspecific’ [-Wredundant-decls]
  extern void *pthread_getspecific (pthread_key_t __key)
               ^
 In file included from threads.c:28:0:
 /usr/include/pthread.h:1110:14: note: previous declaration of ‘pthread_getspecific’ was here
  extern void *pthread_getspecific (pthread_key_t __key) __THROW;
               ^
 threads.c:58:12: warning: redundant redeclaration of ‘pthread_setspecific’ [-Wredundant-decls]
  extern int pthread_setspecific (pthread_key_t __key,
             ^
 In file included from threads.c:28:0:
 /usr/include/pthread.h:1113:12: note: previous declaration of ‘pthread_setspecific’ was here
  extern int pthread_setspecific (pthread_key_t __key,
             ^
 threads.c:61:12: warning: redundant redeclaration of ‘pthread_key_create’ [-Wredundant-decls]
  extern int pthread_key_create (pthread_key_t *__key,
             ^
 In file included from threads.c:28:0:
 /usr/include/pthread.h:1102:12: note: previous declaration of ‘pthread_key_create’ was here
  extern int pthread_key_create (pthread_key_t *__key,
             ^
 threads.c:64:12: warning: redundant redeclaration of ‘pthread_key_delete’ [-Wredundant-decls]
  extern int pthread_key_delete (pthread_key_t __key)
             ^
 In file included from threads.c:28:0:
 /usr/include/pthread.h:1107:12: note: previous declaration of ‘pthread_key_delete’ was here
  extern int pthread_key_delete (pthread_key_t __key) __THROW;
             ^
 threads.c:67:5: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
      __attribute((weak));
      ^
 threads.c:66:12: warning: redundant redeclaration of ‘pthread_mutex_init’ [-Wredundant-decls]
  extern int pthread_mutex_init ()
             ^
 In file included from threads.c:28:0:
 /usr/include/pthread.h:740:12: note: previous declaration of ‘pthread_mutex_init’ was here
  extern int pthread_mutex_init (pthread_mutex_t *__mutex,
             ^
 threads.c:69:5: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
      __attribute((weak));
      ^
 threads.c:68:12: warning: redundant redeclaration of ‘pthread_mutex_destroy’ [-Wredundant-decls]
  extern int pthread_mutex_destroy ()
             ^
 In file included from threads.c:28:0:
 /usr/include/pthread.h:745:12: note: previous declaration of ‘pthread_mutex_destroy’ was here
  extern int pthread_mutex_destroy (pthread_mutex_t *__mutex)
             ^
 threads.c:71:5: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
      __attribute((weak));
      ^
 threads.c:70:12: warning: redundant redeclaration of ‘pthread_mutex_lock’ [-Wredundant-decls]
  extern int pthread_mutex_lock ()
             ^
 In file included from threads.c:28:0:
 /usr/include/pthread.h:753:12: note: previous declaration of ‘pthread_mutex_lock’ was here
  extern int pthread_mutex_lock (pthread_mutex_t *__mutex)
             ^
 threads.c:73:5: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
      __attribute((weak));
      ^
 threads.c:72:12: warning: redundant redeclaration of ‘pthread_mutex_unlock’ [-Wredundant-decls]
  extern int pthread_mutex_unlock ()
             ^
 In file included from threads.c:28:0:
 /usr/include/pthread.h:764:12: note: previous declaration of ‘pthread_mutex_unlock’ was here
  extern int pthread_mutex_unlock (pthread_mutex_t *__mutex)
             ^
 threads.c:75:5: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
      __attribute((weak));
      ^
 threads.c:74:12: warning: redundant redeclaration of ‘pthread_cond_init’ [-Wredundant-decls]
  extern int pthread_cond_init ()
             ^
 In file included from threads.c:28:0:
 /usr/include/pthread.h:959:12: note: previous declaration of ‘pthread_cond_init’ was here
  extern int pthread_cond_init (pthread_cond_t *__restrict __cond,
             ^
 threads.c:77:5: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
      __attribute((weak));
      ^
 threads.c:76:12: warning: redundant redeclaration of ‘pthread_cond_destroy’ [-Wredundant-decls]
  extern int pthread_cond_destroy ()
             ^
 In file included from threads.c:28:0:
 /usr/include/pthread.h:964:12: note: previous declaration of ‘pthread_cond_destroy’ was here
  extern int pthread_cond_destroy (pthread_cond_t *__cond)
             ^
 threads.c:79:5: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
      __attribute((weak));
      ^
 threads.c:78:12: warning: redundant redeclaration of ‘pthread_cond_wait’ [-Wredundant-decls]
  extern int pthread_cond_wait ()
             ^
 In file included from threads.c:28:0:
 /usr/include/pthread.h:980:12: note: previous declaration of ‘pthread_cond_wait’ was here
  extern int pthread_cond_wait (pthread_cond_t *__restrict __cond,
             ^
 threads.c:81:5: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
      __attribute((weak));
      ^
 threads.c:80:12: warning: redundant redeclaration of ‘pthread_equal’ [-Wredundant-decls]
  extern int pthread_equal ()
             ^
 In file included from threads.c:28:0:
 /usr/include/pthread.h:277:12: note: previous declaration of ‘pthread_equal’ was here
  extern int pthread_equal (pthread_t __thread1, pthread_t __thread2)
             ^
 threads.c:83:5: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
      __attribute((weak));
      ^
 threads.c:82:18: warning: redundant redeclaration of ‘pthread_self’ [-Wredundant-decls]
  extern pthread_t pthread_self ()
                   ^
 In file included from threads.c:28:0:
 /usr/include/pthread.h:274:18: note: previous declaration of ‘pthread_self’ was here
  extern pthread_t pthread_self (void) __THROW __attribute__ ((__const__));
                   ^
 threads.c:85:5: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
      __attribute((weak));
      ^
 threads.c:84:12: warning: redundant redeclaration of ‘pthread_key_create’ [-Wredundant-decls]
  extern int pthread_key_create ()
             ^
 In file included from threads.c:28:0:
 /usr/include/pthread.h:1102:12: note: previous declaration of ‘pthread_key_create’ was here
  extern int pthread_key_create (pthread_key_t *__key,
             ^
 threads.c:87:5: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
      __attribute((weak));
      ^
 threads.c:86:12: warning: redundant redeclaration of ‘pthread_key_delete’ [-Wredundant-decls]
  extern int pthread_key_delete ()
             ^
 In file included from threads.c:28:0:
 /usr/include/pthread.h:1107:12: note: previous declaration of ‘pthread_key_delete’ was here
  extern int pthread_key_delete (pthread_key_t __key) __THROW;
             ^
 threads.c:89:5: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
      __attribute((weak));
      ^
 threads.c:88:12: warning: redundant redeclaration of ‘pthread_cond_signal’ [-Wredundant-decls]
  extern int pthread_cond_signal ()
             ^
 In file included from threads.c:28:0:
 /usr/include/pthread.h:968:12: note: previous declaration of ‘pthread_cond_signal’ was here
  extern int pthread_cond_signal (pthread_cond_t *__cond)
             ^
   CC       c14n.lo
   CC       xmlstring.lo
   CC       buf.lo
   CC       xmlregexp.lo
   CC       xmlschemas.lo
   CC       xmlschemastypes.lo
   CC       xmlunicode.lo
   CC       xmlreader.lo
   CC       relaxng.lo
   CC       dict.lo
   CC       SAX2.lo
   CC       xmlwriter.lo
   CC       legacy.lo
   CC       chvalid.lo
   CC       pattern.lo
   CC       xmlsave.lo
   CC       xmlmodule.lo
   CC       schematron.lo
   CC       xzlib.lo
   CCLD     libxml2.la
   CC       testdso.lo
   CCLD     testdso.la
   CC       xmllint.o
   CCLD     xmllint
 ./.libs/libxml2.a(xmlIO.o): In function `xmlGzfileOpen_real':
 xmlIO.c:(.text+0xfa9): undefined reference to `gzdopen'
 xmlIO.c:(.text+0x1061): undefined reference to `gzopen64'
 ./.libs/libxml2.a(xmlIO.o): In function `xmlGzfileOpenW':
 xmlIO.c:(.text+0x1155): undefined reference to `gzdopen'
 xmlIO.c:(.text+0x11f6): undefined reference to `gzopen64'
 ./.libs/libxml2.a(xmlIO.o): In function `xmlGzfileRead':
 xmlIO.c:(.text+0x1229): undefined reference to `gzread'
 ./.libs/libxml2.a(xmlIO.o): In function `xmlGzfileWrite':
 xmlIO.c:(.text+0x1271): undefined reference to `gzwrite'
 ./.libs/libxml2.a(xmlIO.o): In function `xmlGzfileClose':
 xmlIO.c:(.text+0x12a8): undefined reference to `gzclose'
 ./.libs/libxml2.a(xmlIO.o): In function `xmlFreeZMemBuff':
 xmlIO.c:(.text+0x1365): undefined reference to `deflateEnd'
 ./.libs/libxml2.a(xmlIO.o): In function `xmlCreateZMemBuff':
 xmlIO.c:(.text+0x148e): undefined reference to `deflateInit2_'
 xmlIO.c:(.text+0x150a): undefined reference to `crc32'
 ./.libs/libxml2.a(xmlIO.o): In function `xmlZMemBuffAppend':
 xmlIO.c:(.text+0x17d8): undefined reference to `deflate'
 xmlIO.c:(.text+0x186e): undefined reference to `crc32'
 ./.libs/libxml2.a(xmlIO.o): In function `xmlZMemBuffGetContent':
 xmlIO.c:(.text+0x18d7): undefined reference to `deflate'
 ./.libs/libxml2.a(xmlIO.o): In function `__xmlParserInputBufferCreateFilename':
 xmlIO.c:(.text+0x2aab): undefined reference to `gzdirect'
 ./.libs/libxml2.a(nanohttp.o): In function `xmlNanoHTTPFreeCtxt':
 nanohttp.c:(.text+0x785): undefined reference to `inflateEnd'
 ./.libs/libxml2.a(nanohttp.o): In function `xmlNanoHTTPScanAnswer':
 nanohttp.c:(.text+0x16b2): undefined reference to `inflateInit2_'
 ./.libs/libxml2.a(nanohttp.o): In function `xmlNanoHTTPRead':
 nanohttp.c:(.text+0x2037): undefined reference to `inflate'
 collect2: error: ld returned 1 exit status
 make[2]: *** [xmllint] Error 1
 make[2]: Leaving directory `/opt/chef/embedded/lib/ruby/gems/2.1.0/gems/nokogiri-1.6.6.2/ext/nokogiri/tmp/x86_64-unknown-linux-gnu/ports/libxml2/2.9.2/libxml2-2.9.2'
 make[1]: *** [all-recursive] Error 1
 make[1]: Leaving directory `/opt/chef/embedded/lib/ruby/gems/2.1.0/gems/nokogiri-1.6.6.2/ext/nokogiri/tmp/x86_64-unknown-linux-gnu/ports/libxml2/2.9.2/libxml2-2.9.2'
 make: *** [all] Error 2

recipe

chef_gem 'chef-provisioning' do
	action :install
end

require 'chef/provisioning'

Did you ever figure out how to fix this issue?