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Jeremy Volkening jvolkening

  • BASE₂BIO LLC
  • Wisconsin, USA
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jvolkening / test.comet.pep.xml
Created December 14, 2018 09:42
test output from crux-comet
<?xml version="1.0" encoding="UTF-8"?>
<msms_pipeline_analysis date="2018-12-11T10:32:39" xmlns="http://regis-web.systemsbiology.net/pepXML" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://sashimi.sourceforge.net/schema_revision/pepXML/pepXML_v120.xsd" summary_xml="scrubbed">
<msms_run_summary base_name="scrubbed" msManufacturer="UNKNOWN" msModel="UNKNOWN" raw_data_type="raw" raw_data=".mzML">
<sample_enzyme name="Trypsin">
<specificity cut="KR" no_cut="P" sense="C"/>
</sample_enzyme>
<search_summary base_name="scrubbed" search_engine="Comet" search_engine_version="2018.01 rev. 0" precursor_mass_type="monoisotopic" fragment_mass_type="monoisotopic" search_id="1">
<search_database local_path="pp.fa" type="AA"/>
<enzymatic_search_constraint enzyme="Trypsin" max_num_internal_cleavages="1" min_number_termini="2"/>
<aminoacid_modification aminoacid="M" massdiff="15.994900" mass="147.035385" variable="Y" symbol="*"/>
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jvolkening / lzw_fail.txt
Last active January 13, 2020 21:57
test strings that fails Compress::LZW validation
TTTTTATTATTAACCATGAGAATTGTTGATAAATCTGTGGATAACTCTAAAAAAATTCCGGATTTATAAAAGTACATTAAAATATTTATATTTTAATGTAAATATTATATCACTTTTTCACAAAAACGTGTATTATATATAAGGAGTTTTGTAAATTATTTAACTATATTACTATGTAATATAGTTATTATATCAAAACAAACTAAAACAGTAGAGCAACCTTTAAAAATTAACTAAAAACTAAATACAAATTTGTTTATAGACGAAAGTTTTTCTATTAATATCCCCACATTAACTCTATAAAAACCCCTATACTAAAAAAAAACACACTCTGAATACATAACTTGTATGTAAAGTTTGAGTGAAGTTAAATCGCTTTAATATTGTAACAATATTGTTTGTAAAAATATTTATTTAATATGAAAAAAATATTGTGATTTTTATCGGAAATATTGTGATTTTCTAATTCAGGCCAATTAAAAATATCAAAACTAATTACTTAAATAAAAATATCAATAAATAAATTAAAAAACTTATTAACATTTCTACTAAGAGAGTTCGTATTTGGAAATAATATTAAAGTAATACACAATATTAAAAAAATATTTTTAGTATTTAAACGATTAAGTACTTTTTCATTCTTTTGTCTATCTGTAAAAGACACTAGGTAAGGATTACTTTATTAACAAGATAAAGAGAAAAGAATTTATTTTTAATAATACGATTTTAATATTTTTAAAATATTATTCAATTTACGTTGTTTTATTACCAAAAATAGAATATTAAAACAATATTTATAAGTTAATTAAAATTAATACTTTTTAAAACAAAACAACAATATTATTTCAATATGGTCACAGTAGTCACAATAAAGTTGATAATATTTAAATAATATTAATTAAATATTTATTCAAGAATTTATTATTCTTGAATAACAGCAAAAAACTTTTATAGAACTGAAGAGCATTCTTAAAAAAGAAAAAACCTAATGCTAACGGCATCAGAACTAACTAATACGAAAATA
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jvolkening / config.gc
Created February 16, 2024 06:06
complete (non-working) config.gc and diff
## Configured by: ~cf_email~
## Target system: WIN32
Author=''
Date='$Date'
Header=''
Id='$Id'
Locker=''
Log='$Log'
RCSfile='$RCSfile'
Revision='$Revision'