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## Configured by: ~cf_email~ | |
## Target system: WIN32 | |
Author='' | |
Date='$Date' | |
Header='' | |
Id='$Id' | |
Locker='' | |
Log='$Log' | |
RCSfile='$RCSfile' | |
Revision='$Revision' |
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TTTTTATTATTAACCATGAGAATTGTTGATAAATCTGTGGATAACTCTAAAAAAATTCCGGATTTATAAAAGTACATTAAAATATTTATATTTTAATGTAAATATTATATCACTTTTTCACAAAAACGTGTATTATATATAAGGAGTTTTGTAAATTATTTAACTATATTACTATGTAATATAGTTATTATATCAAAACAAACTAAAACAGTAGAGCAACCTTTAAAAATTAACTAAAAACTAAATACAAATTTGTTTATAGACGAAAGTTTTTCTATTAATATCCCCACATTAACTCTATAAAAACCCCTATACTAAAAAAAAACACACTCTGAATACATAACTTGTATGTAAAGTTTGAGTGAAGTTAAATCGCTTTAATATTGTAACAATATTGTTTGTAAAAATATTTATTTAATATGAAAAAAATATTGTGATTTTTATCGGAAATATTGTGATTTTCTAATTCAGGCCAATTAAAAATATCAAAACTAATTACTTAAATAAAAATATCAATAAATAAATTAAAAAACTTATTAACATTTCTACTAAGAGAGTTCGTATTTGGAAATAATATTAAAGTAATACACAATATTAAAAAAATATTTTTAGTATTTAAACGATTAAGTACTTTTTCATTCTTTTGTCTATCTGTAAAAGACACTAGGTAAGGATTACTTTATTAACAAGATAAAGAGAAAAGAATTTATTTTTAATAATACGATTTTAATATTTTTAAAATATTATTCAATTTACGTTGTTTTATTACCAAAAATAGAATATTAAAACAATATTTATAAGTTAATTAAAATTAATACTTTTTAAAACAAAACAACAATATTATTTCAATATGGTCACAGTAGTCACAATAAAGTTGATAATATTTAAATAATATTAATTAAATATTTATTCAAGAATTTATTATTCTTGAATAACAGCAAAAAACTTTTATAGAACTGAAGAGCATTCTTAAAAAAGAAAAAACCTAATGCTAACGGCATCAGAACTAACTAATACGAAAATA |
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<?xml version="1.0" encoding="UTF-8"?> | |
<msms_pipeline_analysis date="2018-12-11T10:32:39" xmlns="http://regis-web.systemsbiology.net/pepXML" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://sashimi.sourceforge.net/schema_revision/pepXML/pepXML_v120.xsd" summary_xml="scrubbed"> | |
<msms_run_summary base_name="scrubbed" msManufacturer="UNKNOWN" msModel="UNKNOWN" raw_data_type="raw" raw_data=".mzML"> | |
<sample_enzyme name="Trypsin"> | |
<specificity cut="KR" no_cut="P" sense="C"/> | |
</sample_enzyme> | |
<search_summary base_name="scrubbed" search_engine="Comet" search_engine_version="2018.01 rev. 0" precursor_mass_type="monoisotopic" fragment_mass_type="monoisotopic" search_id="1"> | |
<search_database local_path="pp.fa" type="AA"/> | |
<enzymatic_search_constraint enzyme="Trypsin" max_num_internal_cleavages="1" min_number_termini="2"/> | |
<aminoacid_modification aminoacid="M" massdiff="15.994900" mass="147.035385" variable="Y" symbol="*"/> |
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@M03709:10:000000000-AHW42:1:2106:18711:1744 1:N:0:AAGAGGCA+ACTGCATA | |
TATTCGTACTGAAAATCAAGATCAAGCGAGCTTTTGCCCTTCTGCTCCACGGGAGGTTTCTGGCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACGCTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGACGCTGTCCCCGGAGCGGGGACAGCGTCAGGTGGGGAGTTTGACTGGGGCGGTACACCTGTCAAAGCG | |
+ | |
>1>>>1B1>A3311DGG1111BB111B000EGHHHFGFGHHGHBAFFAAF////A?EFGFG21AAFGGGHC0BFGGAEEEE1111B0BFG0FCEGFFFEF/?12B11/BBFFFF/<<<<//@@121FGFGCBCCCG000/<<.<1<<G@?--@-----9..9-;A9?B;B.9---9;B//BF/A--A-----/99//99////BB | |
@M03709:10:000000000-AHW42:1:2106:16158:1799 1:N:0:AAGAGGCA+ACTGCATA | |
ACTTTAAATCCTTTAACGAGGATCCATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGAT | |
+ | |
1>AAA331DD@FGGCGGE1110ACFBHHFFHHGGGGGFHHHHCG01A11/A0AGEG??E//FGDF2DGFFHGFGHHHGE?E1FE221BFFDFFHHHHHFFFD11/>FHEGCGGHB11< | |
@M03709:10:000000000-AHW42:1:2106:12433:1810 1:N:0:AAGAGGCA+ACTGCATA | |
GTTCAGACATTTGGTGTATGTGCTTGGCTGAGGAGCCACTGGAGCGAGGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCCCCCCTAAAC |
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@M03709:10:000000000-AHW42:1:2106:18413:15530 1:N:0:AAGAGGCA+ACTGCATA | |
GCGCACCACCGGCCCGTCTCGCCCGCCTCGCCGGGGAGGTGGAGCATGAGCGCGCGTGCTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCCGGGTATAGGGGCGAAAGACTAATCGAACCATCTAGTAGCTGGTTCCCTCCGAAGTTTCCCCAGGATAGCTGGCGCTCGGGGCGGCGGTG | |
+ | |
AABCCCCFCCCCGGGGGGGGGGGGGGGGGGGGCGGGGFFEHGHHHEGHHHHGGGGGGGGGHHHHHHGG@FGGHGHHGHHHHHHHHHHGHHGHGGGGGGGGGGHHGGFGEHHHHHHHGGHDHHGGHHGHGGGGGADGGFGGGCAFGGEFGGFFFFFFFFFFFFFFA.@FFFFFDFFFCFFFFFFFFFFFFFFFFFFFFBFBFFFFFFFFFFFFFDFF9FFFFFFF?EFFFEFFBFFFFFFFFAAAFFCFB-- | |
@M03709:10:000000000-AHW42:1:2106:11146:15531 1:N:0:AAGAGGCA+ACTGCATA | |
CCTCAGGATAGCTGGCGCTCGGGGCGGCGGTGCAGTTTTACCCGGTAAAGCGAATGATTAGAGGTCTTGGGGCCGAAACGATCTCAACCTATTCTCAAACTTTCAATGGGTAAGACGCCCGGCTCGCTGGCGTGGAGCCGGGCCGTGGAATGCGAGCGCTCAGTGGGCCACTTTTGGTAAGCAGAACTGGCGCTGCGGGATGAACCGAACGCCGGGTTAAGGCGCCCGATGCCGACGCTCATCAGAGCCCA | |
+ | |
AAAABFFF4DFBGFBAE2AEE??EGGGGGGGEEEHEGBGHHF?E>>EFFFGGGCEHFFHH3GGFB0GFDFCC<BCGCGCGFHEHHHG0GHHFHHDBDDFFFHHGGHHGFF<0GDFHD@DCC-@@ |
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@SALLY:297:D1JLYACXX:7:1101:9691:17720 1:N:0: | |
AATTTTAGTCATGACAATAAATATAATACAGGAATAGTAGCTGATATGTTTTTAGTATTTACCATTTAAAATTTCCTTGCAATGTATTGTTATTCATGTCT | |
+ | |
CCCFFFFFHHHHHJJJJJJJJJJJJJIJJJJJJJJIIHIIIJJGJJJJJJIJJHIGIIIJJIIJJJJJJJJJJJJHIJJJJJJJIHHHHHHHFFFFFFFED | |
@SALLY:297:D1JLYACXX:7:1101:9506:17722 1:N:0: | |
AATAATAATTACCTGTATTAGTACATTATTTAATTGTACCAAATCTCTTATATATAGTTAGTTCAGATATTTGGGGGGCTTTCCAGGTAGCTCAGTCGTAA | |
+ | |
CCCFFFFFHHHHHJJHIJJJJHIJJJJJJJJGHIJIHIJJJJJJJJJJJJJIJJIJJJJJJIJJIJJIJIJJJJJHIDDDDDDDEDDCDDDDDDDDDDDDD | |
@SALLY:297:D1JLYACXX:7:1101:9656:17723 1:N:0: | |
CTACAGTTTATTTTTATTCATTTAATTTTTTTTTTTAACTTACATTTTGGAGAAGGAAATGGCAACCCACTCCAGGACTCTCTCCTGGAAAATACCATGGA |
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Percolator version 3.01, Build Date Nov 16 2016 14:58:22 | |
Copyright (c) 2006-9 University of Washington. All rights reserved. | |
Written by Lukas Käll (lukall@u.washington.edu) in the | |
Department of Genome Sciences at the University of Washington. | |
Issued command: | |
percolator -Y -t 0.02 -m test.sep.psm.tsv -r test.sep.pep.tsv test.sep.pin | |
Started Wed Mar 8 08:47:56 2017 | |
Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 | |
Reading tab-delimited input from datafile test.sep.pin | |
Features: |
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Percolator version 3.01, Build Date Nov 16 2016 14:58:22 | |
Copyright (c) 2006-9 University of Washington. All rights reserved. | |
Written by Lukas Käll (lukall@u.washington.edu) in the | |
Department of Genome Sciences at the University of Washington. | |
Issued command: | |
percolator -t 0.02 -m test.concat.psm.tsv -r test.concat.pep.tsv test.concat.pin | |
Started Wed Mar 8 08:48:30 2017 | |
Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 | |
Reading tab-delimited input from datafile test.concat.pin | |
Features: |
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#!/usr/bin/env perl | |
# re-calculates index offsets and SHA1 sum for indexed mzML file that has been | |
# modified for some reason | |
use strict; | |
use warnings; | |
use XML::Parser; | |
use Digest::SHA; |
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