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Pathway Commons Guide: Workflow -- Get Data
Raw
README.md

Pathway Commons: Guide

This code is referenced in the pathway enrichment workflow step Get Data.

Use the TCGAbiolinks R/Bioconductor package to query the Genomic Data Commons (GDC) data portal for The Cancer Genome Atlas (TCGA) high-grade serous ovarian cancer (HGS-OvCa) RNA sequencing count data.

Software requirements

Details

  • get_data.R
    • Modify BASE_DIR variable to point to the directory where you wish to download files
    • You will need the subtype assignments for the HGS-OvCa cases in Verhaak_JCI_2013_tableS1.txt. This is a tab-delimited file that maps TCGA patient barcodes (ID) to one of four expression subtypes (SUBTYPE).
    • The resulting edgeR DGEList container with the data and groups will be saved to file as TCGAOV_data.rda
Raw
get_data.R
rm(list=ls(all=TRUE))
### ============ Install packages from Bioconductor ========
# source("https://bioconductor.org/biocLite.R")
# biocLite(c("TCGAbiolinks", "DEFormats"))
library(TCGAbiolinks)
library(SummarizedExperiment)
library(DEFormats)
### ============ Declare directories =========
BASE_DIR <- "/Documents/data/TCGA" # Change to match your directory structure
TCGAOV_RNASEQ_DIR <- file.path(BASE_DIR)
TCGAOV_SUBTYPES_FILE <- file.path(BASE_DIR, "Verhaak_JCI_2013_tableS1.txt")
### ============ 1. Query =========
query <- GDCquery(project = "TCGA-OV",
data.category = "Transcriptome Profiling",
workflow.type = "HTSeq - Counts")
### ============ 2. Download =========
GDCdownload(query = query,
method = "client",
directory = TCGAOV_RNASEQ_DIR)
### ============ 3. Prepare =========
se <- GDCprepare(query=query,
save = TRUE,
save.filename = file.path(TCGAOV_RNASEQ_DIR, "tcgaovRnaSeq.rda"),
summarizedExperiment=TRUE,
remove.files.prepared = FALSE,
directory=TCGAOV_RNASEQ_DIR)
### ============ 4.Integrate =========
### Load subtype assignments
TCGAOV_subtypes <- read.table(TCGAOV_SUBTYPES_FILE,
header = TRUE,
sep = "\t",
quote="\"",
check.names = FALSE,
stringsAsFactors = FALSE)
### TCGA barcodes shared between se and subtype assignments
barcodes <- intersect(colData(se)$patient, TCGAOV_subtypes$ID)
### Corresponding indices of se
indices_se_with_subtype <- match(barcodes, colData(se)$patient)
### Corresponding indices of TCGAOV_subtypes
indices_subtype_in_se <- match(barcodes, TCGAOV_subtypes$ID)
### Subset se samples
se <- se[, indices_se_with_subtype]
### convert to DGEList
TCGAOV_data = DGEList(se, group=TCGAOV_subtypes$SUBTYPE[indices_subtype_in_se])
### save to file
save(TCGAOV_data, file=file.path(TCGAOV_RNASEQ_DIR, "TCGAOV_data.rda"))
Raw
Verhaak_JCI_2013_tableS1.txt
ID DATASET SUBTYPE AGE PLATINUM-STATUS STAGE GRADE TUMORRESIDUALDISEASE SURVIVALSTATUS SURVIVALMONTHS RECURRENCE-STATUS RECURRENCE-MONTHS CloverLeaf Differentiated ssGSEA raw score Immunoreactive ssGSEA raw score Mesenchymal ssGSEA raw score Proliferative ssGSEA raw score Differentiated ssGSEA normalized score Immunoreactive ssGSEA normalized score Mesenchymal ssGSEA normalized score Proliferative ssGSEA normalized score Differentiated-binary Immunoreactive-binary Mesenchymal-binary Proliferative-binary SILHOUETTE WIDTH
TCGA-59-2348 TCGA-discovery Differentiated 59.0 unknown IIIC G3 unknown LIVING 60 unknown unknown NA "1,592.3" "1,262.9" 890.2 "1,269.2" 0.663 0.625 0.409 0.459 1 0 0 1 -0.02802094
TCGA-24-1604 TCGA-discovery Differentiated 67.0 unknown IIIC G3 unknown LIVING 60 unknown unknown NA "2,095.4" "1,373.8" 505.2 863.4 0.821 0.613 0.275 0.294 1 0 0 1 0.071628843
TCGA-23-1118 TCGA-discovery Differentiated 45.0 SENSITIVE IIIC G3 Suboptimal LIVING 60 unknown unknown NA "1,374.7" "1,661.4" 836.7 "1,060.1" 0.645 0.759 0.301 0.456 1 1 0 1 -0.030584961
TCGA-23-2081 TCGA-discovery Differentiated 49.0 unknown IV G3 Optimal LIVING 60 unknown unknown NA "2,319.3" 229.9 "1,492.2" 829.8 0.917 0.265 0.579 0.275 1 0 1 1 -0.001736779
TCGA-04-1367 TCGA-discovery Differentiated 50.0 SENSITIVE IIIC G3 Optimal LIVING 60 unknown unknown NA "2,237.7" 700.1 -140.8 940.0 0.781 0.419 0.173 0.359 1 0 0 1 0.075520843
TCGA-61-2097 TCGA-discovery Differentiated 71.0 SENSITIVE IIC G2 Optimal LIVING 60 unknown unknown NA "2,335.3" "1,370.0" "2,057.9" "1,137.3" 0.805 0.668 0.755 0.399 1 0 1 1 0.02014374
TCGA-24-2297 TCGA-discovery Differentiated 56.0 unknown IIIC G3 Suboptimal DECEASED 56.6 unknown unknown NA "1,555.1" 268.2 469.8 "1,326.1" 0.667 0.328 0.249 0.466 1 0 0 1 -0.022855619
TCGA-61-2101 TCGA-discovery Differentiated 55.0 SENSITIVE IIIC G2 Suboptimal DECEASED 56.3 unknown unknown NA "1,590.2" 96.5 "1,789.5" "1,160.9" 0.712 0.190 0.643 0.437 1 0 1 1 -0.117063659
TCGA-61-2092 TCGA-discovery Differentiated 57.0 SENSITIVE IIIC G3 Optimal LIVING 52.4 unknown unknown NA "2,095.6" -306.5 -728.4 242.2 0.803 0.383 0.177 0.340 1 0 0 0 0.032762887
TCGA-04-1336 TCGA-discovery Differentiated 55.0 unknown IIIB G3 Optimal LIVING 49.8 unknown unknown NA "1,809.4" "1,884.0" 521.0 867.2 0.752 0.739 0.296 0.338 1 1 0 1 -0.042764668
TCGA-25-2391 TCGA-discovery Differentiated 57.0 unknown IIIC G3 Suboptimal DECEASED 49.7 unknown unknown NA "2,003.5" "1,459.8" 641.5 "1,647.2" 0.832 0.681 0.282 0.546 1 1 0 1 0.007313157
TCGA-13-0905 TCGA-discovery Differentiated 51.0 SENSITIVE IIIC G3 unknown LIVING 48.5 unknown unknown NA "1,818.3" 881.4 595.9 "1,142.5" 0.812 0.458 0.352 0.409 1 0 0 1 0.082182533
TCGA-23-1021 TCGA-discovery Differentiated 45.0 unknown IV G3 Suboptimal DECEASED 48.2 unknown unknown NA "2,405.2" 686.1 449.0 531.8 0.923 0.482 0.263 0.295 1 0 0 1 0.144997561
TCGA-13-0903 TCGA-discovery Differentiated 42.0 SENSITIVE IV G3 Optimal LIVING 48.0 unknown unknown NA "1,590.9" 941.1 "1,336.0" 284.3 0.740 0.454 0.447 0.148 1 0 0 0 0.02565218
TCGA-29-1694 TCGA-discovery Differentiated 45.0 unknown IIIC GX Suboptimal DECEASED 39.1 unknown unknown NA "2,928.9" "1,238.0" "1,536.8" 338.7 0.984 0.634 0.575 0.028 1 0 1 0 0.020557686
TCGA-61-1910 TCGA-discovery Differentiated 56.0 SENSITIVE IIC G3 Optimal LIVING 37.5 unknown unknown NA "1,482.6" 764.7 -22.7 637.2 0.552 0.353 0.096 0.296 1 0 0 1 0.023812931
TCGA-10-0936 TCGA-discovery Differentiated 69.0 unknown IIIC G3 Suboptimal DECEASED 36.3 unknown unknown NA "1,489.7" "1,123.5" -640.4 639.7 0.695 0.518 0.008 0.311 1 0 0 1 0.02096718
TCGA-57-1993 TCGA-discovery Differentiated 56.0 unknown IIIC G3 Optimal LIVING 25.4 unknown unknown NA "1,786.9" "1,237.1" 648.5 981.0 0.689 0.587 0.265 0.429 1 0 0 1 0.003127848
TCGA-61-1724 TCGA-discovery Differentiated 47.0 unknown IIIC G3 Optimal DECEASED 21.2 unknown unknown NA "1,819.9" "1,371.7" "1,125.5" 932.4 0.745 0.597 0.471 0.318 1 0 0 1 -0.016979298
TCGA-04-1342 TCGA-discovery Differentiated 80.0 unknown IV G2 Suboptimal DECEASED 18.8 unknown unknown NA "1,658.4" 631.5 "1,373.6" "1,005.8" 0.703 0.373 0.564 0.440 1 0 0 1 0.008727848
TCGA-09-0367 TCGA-discovery Differentiated 67.0 SENSITIVE IIIC G3 Optimal DECEASED 18.2 unknown unknown NA "2,502.9" "1,246.9" -48.2 206.2 0.899 0.476 0.208 0.131 1 0 0 0 0.128325649
TCGA-29-1778 TCGA-discovery Differentiated 77.0 SENSITIVE IIIC G3 Optimal LIVING 15.1 unknown unknown NA "1,278.9" "1,398.2" 854.4 "1,197.0" 0.550 0.641 0.356 0.484 1 0 0 1 -0.001643408
TCGA-09-2056 TCGA-discovery Differentiated 62.0 SENSITIVE IIIC G3 Optimal LIVING 12.6 unknown unknown NA "1,865.3" "1,436.0" 835.1 535.8 0.743 0.664 0.342 0.259 1 1 0 1 -0.03479243
TCGA-25-2397 TCGA-discovery Differentiated 59.0 unknown IV G3 Optimal DECEASED 12.2 unknown unknown NA "2,211.1" 998.1 328.5 "1,078.9" 0.823 0.500 0.292 0.436 1 0 0 1 0.094001018
TCGA-29-1776 TCGA-discovery Differentiated 63.0 unknown IIIC G3 Suboptimal LIVING 12.0 unknown unknown NA "1,894.7" "1,009.2" "1,388.0" "1,222.5" 0.760 0.477 0.538 0.376 1 0 0 1 -0.033856366
TCGA-13-1403 TCGA-discovery Differentiated 48.0 SENSITIVE IIIC G3 unknown LIVING 11.0 unknown unknown NA "2,197.2" 441.4 "1,454.3" 653.0 0.850 0.317 0.583 0.331 1 0 1 1 0.039380277
TCGA-09-1659 TCGA-discovery Differentiated 51.0 unknown IIIC G3 Suboptimal DECEASED 10.1 unknown unknown NA 885.6 "1,277.7" "1,052.2" "1,052.9" 0.400 0.515 0.312 0.459 1 0 0 1 -0.029498132
TCGA-61-1904 TCGA-discovery Differentiated 60.0 unknown IIIC G3 Optimal LIVING 9.2 unknown unknown NA "2,564.6" "1,662.5" "1,108.8" 457.2 0.749 0.605 0.421 0.275 1 1 0 0 0.058897765
TCGA-23-1029 TCGA-discovery Differentiated 46.0 SENSITIVE IIIC G3 Optimal LIVING 8.9 unknown unknown NA "1,568.8" "1,208.5" 875.1 "1,561.2" 0.667 0.551 0.354 0.633 1 0 0 1 0.023492714
TCGA-13-0797 TCGA-discovery Differentiated 49.0 unknown IIIC G3 Optimal LIVING 8.8 unknown unknown NA "2,285.9" "1,426.7" 11.2 430.5 0.886 0.583 0.229 0.223 1 1 0 0 0.027149859
TCGA-61-1899 TCGA-discovery Differentiated 81.0 RESISTANT IIIC G3 Optimal LIVING 8.5 unknown unknown NA "2,002.1" 848.1 366.5 371.8 0.784 0.431 0.273 0.243 1 0 0 0 0.04156698
TCGA-24-0966 TCGA-discovery Differentiated 78.0 RESISTANT IIIC G3 Suboptimal LIVING 7.7 unknown unknown NA "1,832.1" 593.7 -355.6 187.8 0.835 0.322 0.070 0.213 1 0 0 0 0.090585481
TCGA-13-0923 TCGA-discovery Differentiated 74.0 unknown IIIC G3 Optimal LIVING 6.5 unknown unknown NA "1,128.6" "1,373.6" 606.7 "1,727.0" 0.536 0.573 0.250 0.505 1 0 0 1 0.004219177
TCGA-24-1416 TCGA-discovery Differentiated 34.0 unknown IV G3 Optimal LIVING 6.5 unknown unknown NA "2,212.3" "1,015.6" 402.5 309.3 0.901 0.508 0.254 0.198 1 0 0 0 0.126412409
TCGA-24-1413 TCGA-discovery Differentiated 51.0 unknown IIIC G3 Optimal LIVING 6.4 unknown unknown NA "1,999.7" 982.5 372.5 793.6 0.741 0.508 0.121 0.291 1 0 0 1 0.108574088
TCGA-24-1423 TCGA-discovery Differentiated 61.0 unknown IIIC G3 Optimal LIVING 6.3 unknown unknown NA "2,189.8" 974.1 770.2 "1,086.3" 0.883 0.513 0.317 0.388 1 0 0 1 0.088042318
TCGA-13-0921 TCGA-discovery Differentiated 72.0 SENSITIVE IIIC G3 Optimal LIVING 4.7 unknown unknown NA "2,365.2" 761.1 531.1 510.7 0.817 0.423 0.242 0.423 1 0 0 1 0.096787625
TCGA-13-1511 TCGA-discovery Differentiated 52.0 unknown IV G3 Suboptimal LIVING 3.9 unknown unknown NA "1,535.2" "1,213.6" "1,684.5" 756.9 0.714 0.523 0.680 0.358 1 0 1 1 -0.025937994
TCGA-24-1845 TCGA-discovery Differentiated 42.0 SENSITIVE IIIC G3 Optimal LIVING 3.9 unknown unknown NA "1,995.1" "1,745.0" -820.9 324.4 0.774 0.726 0.009 0.153 1 1 0 0 -0.025215534
TCGA-24-1844 TCGA-discovery Differentiated 64.0 unknown IIIC G3 Optimal LIVING 3.8 unknown unknown NA "1,555.5" -179.7 528.7 "1,512.5" 0.630 0.250 0.209 0.460 1 0 0 1 -0.071365427
TCGA-23-1111 TCGA-discovery Differentiated 63.0 SENSITIVE IIIC G3 Suboptimal LIVING 3.3 unknown unknown NA "2,333.4" 24.0 "1,522.4" "1,447.9" 0.889 0.264 0.595 0.534 1 0 1 1 -0.015714421
TCGA-20-1686 TCGA-discovery Differentiated 75.0 unknown IIIC G3 Optimal LIVING 3.0 unknown unknown NA "2,254.6" 324.1 905.0 859.1 0.779 0.327 0.335 0.326 1 0 0 1 -0.008655585
TCGA-20-1687 TCGA-discovery Differentiated 46.0 unknown IV G3 Optimal LIVING 2.7 unknown unknown NA "2,480.5" "1,407.2" "1,125.5" -37.2 0.943 0.644 0.445 0.016 1 0 0 0 0.03196201
TCGA-13-1510 TCGA-discovery Differentiated 62.0 unknown IIIC G3 Optimal LIVING 2.6 unknown unknown NA "1,535.1" 772.7 797.6 925.4 0.716 0.491 0.346 0.370 1 0 0 1 0.06385833
TCGA-59-2355 TCGA-discovery Differentiated 58.0 unknown IV G3 Suboptimal DECEASED 2.2 unknown unknown NA "2,443.7" "1,451.7" "1,620.2" 634.6 0.912 0.652 0.664 0.290 1 1 1 1 0.073328408
TCGA-61-2016 TCGA-discovery Differentiated 51.0 unknown IIIC G3 Optimal DECEASED 1.2 unknown unknown NA "2,409.5" "1,335.8" 894.3 "1,039.3" 0.818 0.644 0.359 0.362 1 0 0 1 0.023117778
TCGA-24-1471 TCGA-discovery Differentiated 60.0 unknown IIIC G3 Suboptimal LIVING 1.2 unknown unknown NA "1,632.9" "1,365.2" 15.3 -23.4 0.655 0.534 0.126 0.165 1 0 0 0 0.034460624
TCGA-24-2262 TCGA-discovery Differentiated 57.0 unknown IIIC G3 Optimal DECEASED 0.4 unknown unknown NA "1,199.5" "1,433.6" "1,649.7" "1,042.2" 0.574 0.667 0.600 0.518 1 1 1 1 -0.080264475
TCGA-25-1631 TCGA-discovery Differentiated 73.0 unknown IIIC G3 Optimal DECEASED 0.3 unknown unknown NA "2,047.8" 619.9 "1,004.1" "1,277.6" 0.721 0.349 0.419 0.509 1 0 0 1 0.045331135
TCGA-04-1649 TCGA-discovery Differentiated 74.0 unknown IIIC G3 Optimal LIVING 60 yes 55.73333333 NA "3,049.1" 654.6 652.1 -440.3 0.935 0.439 0.295 0.106 1 0 0 0 0.179291325
TCGA-24-1555 TCGA-discovery Differentiated 50.0 unknown IIIC G3 unknown LIVING 60 yes 52.56666667 NA "1,591.2" 524.4 -384.5 815.3 0.667 0.276 0.000 0.294 1 0 0 1 0.079359809
TCGA-24-1467 TCGA-discovery Differentiated 51.0 SENSITIVE IIIC G3 Optimal LIVING 60 yes 41.73333333 NA "1,838.0" 581.0 34.6 455.5 0.738 0.293 0.138 0.222 1 0 0 0 0.033280217
TCGA-13-0884 TCGA-discovery Differentiated 39.0 SENSITIVE IIIC G3 Optimal LIVING 60 yes 41.7 NA "2,017.3" "1,392.6" "1,512.4" 904.5 0.864 0.621 0.646 0.377 1 0 1 1 0.028008471
TCGA-24-2038 TCGA-discovery Differentiated 68.0 unknown IIIA GB Optimal DECEASED 45.1 yes 38.96666667 NA "2,278.9" 269.8 815.7 913.0 0.882 0.330 0.344 0.415 1 0 0 1 0.085859998
TCGA-24-2023 TCGA-discovery Differentiated 54.0 unknown IIIA G3 Optimal DECEASED 45.5 yes 35.63333333 NA "2,321.3" "1,402.7" 366.9 488.2 0.910 0.614 0.237 0.265 1 0 0 0 0.012555309
TCGA-09-1662 TCGA-discovery Differentiated 58.0 SENSITIVE IV G3 Optimal LIVING 60 yes 34.86666667 NA "1,938.6" "1,600.0" 866.7 891.8 0.742 0.690 0.326 0.410 1 1 0 1 -0.029878874
TCGA-04-1651 TCGA-discovery Differentiated 53.0 SENSITIVE IIIC G3 Optimal DECEASED 36.7 yes 33 NA "2,296.6" "1,013.6" 608.5 585.6 0.873 0.471 0.356 0.293 1 0 0 1 0.073560478
TCGA-13-1495 TCGA-discovery Differentiated 60.0 SENSITIVE IIIC G2 Optimal LIVING 49.9 yes 32.56666667 NA 983.3 "1,033.7" "1,296.6" "1,688.1" 0.501 0.409 0.522 0.586 1 0 0 1 0.004484949
TCGA-24-1104 TCGA-discovery Differentiated 56.0 RESISTANT IV G3 Suboptimal LIVING 60 yes 31.93333333 NA "2,791.5" "1,414.0" 809.1 -133.6 0.985 0.660 0.336 0.100 1 0 0 0 -0.002660647
TCGA-04-1361 TCGA-discovery Differentiated 57.0 unknown IIIB G3 Optimal LIVING 33.0 yes 30.86666667 NA "2,509.1" "1,072.3" "1,279.4" 998.9 0.897 0.541 0.454 0.413 1 0 0 1 0.077186579
TCGA-04-1652 TCGA-discovery Differentiated 76.0 SENSITIVE IIIC G2 unknown DECEASED 32.3 yes 29.33333333 NA "1,651.4" -803.0 "1,021.1" "1,006.2" 0.605 0.212 0.391 0.392 1 0 0 1 -0.029027756
TCGA-24-2271 TCGA-discovery Differentiated 55.0 unknown IIIC G3 Suboptimal DECEASED 32.1 yes 27.56666667 NA "2,413.3" "1,504.8" "1,633.8" 286.0 0.889 0.735 0.661 0.206 1 1 1 0 -0.055385095
TCGA-13-0883 TCGA-discovery Differentiated 61.0 SENSITIVE IIIC G3 Optimal LIVING 60 yes 27.26666667 NA "1,157.4" "1,095.6" 671.5 937.5 0.530 0.450 0.279 0.361 1 0 0 1 -0.001168381
TCGA-61-2008 TCGA-discovery Differentiated 40.0 SENSITIVE IIC G2 Optimal LIVING 31.0 yes 27.23333333 NA "1,803.4" 849.7 "1,282.2" "1,671.9" 0.634 0.588 0.486 0.578 1 0 0 1 -0.021594376
TCGA-04-1654 TCGA-discovery Differentiated 69.0 SENSITIVE IIIC G2 Optimal DECEASED 48.4 yes 26.93333333 NA "2,243.3" "1,255.6" 964.8 116.1 0.853 0.595 0.415 0.112 1 0 0 0 0.014580886
TCGA-23-1026 TCGA-discovery Differentiated 45.0 SENSITIVE IIIC G3 Optimal LIVING 27.2 yes 26.56666667 NA "2,014.5" "1,982.4" "1,693.9" "1,035.9" 0.861 0.856 0.673 0.291 1 1 1 1 -0.087441311
TCGA-61-1736 TCGA-discovery Differentiated 45.0 SENSITIVE IIIC G3 unknown DECEASED 49.5 yes 25.46666667 NA "2,347.0" "1,362.5" 948.7 219.2 0.898 0.629 0.375 0.246 1 0 0 0 0.035916601
TCGA-13-0891 TCGA-discovery Differentiated 73.0 SENSITIVE IV G3 Optimal LIVING 60 yes 25.36666667 NA "1,336.3" 469.7 393.1 850.2 0.650 0.372 0.309 0.449 1 0 0 1 0.01628942
TCGA-31-1944 TCGA-discovery Differentiated 47.0 unknown IIIC G3 Optimal LIVING 46.2 yes 22.6 NA "1,878.6" "1,075.3" "1,452.7" 997.3 0.796 0.537 0.579 0.383 1 0 1 1 -0.093967518
TCGA-24-1103 TCGA-discovery Differentiated 50.0 SENSITIVE IIIC G3 Optimal DECEASED 54.8 yes 22.56666667 NA "2,073.9" -15.5 105.0 340.6 0.818 0.360 0.141 0.195 1 0 0 0 0.059894822
TCGA-13-0765 TCGA-discovery Differentiated 50.0 SENSITIVE IIIC G3 Optimal LIVING 29.0 yes 22.26666667 NA "2,787.1" "1,009.0" 11.8 322.2 0.916 0.562 0.300 0.233 1 0 0 0 0.087033496
TCGA-13-0751 TCGA-discovery Differentiated 44.0 SENSITIVE IIIC GX Optimal DECEASED 55.9 yes 21.76666667 NA "2,222.7" 177.9 -395.8 682.6 0.783 0.339 0.087 0.235 1 0 0 1 0.062279729
TCGA-23-1124 TCGA-discovery Differentiated 63.0 SENSITIVE IIIC G3 Optimal DECEASED 58.9 yes 21.36666667 NA "1,798.7" "1,190.3" "1,503.1" 524.6 0.745 0.589 0.553 0.408 1 0 1 1 0.012957906
TCGA-09-2045 TCGA-discovery Differentiated 50.0 unknown IV G2 Optimal DECEASED 35.6 yes 21.03333333 NA "2,731.9" "1,174.7" 444.0 -77.4 0.958 0.563 0.177 0.110 1 0 0 0 0.089316715
TCGA-13-1482 TCGA-discovery Differentiated 52.0 SENSITIVE IV G2 Suboptimal LIVING 60 yes 20.06666667 NA 850.7 579.2 "1,516.7" "1,887.9" 0.626 0.316 0.598 0.591 0 0 1 1 -0.013459465
TCGA-29-1771 TCGA-discovery Differentiated 76.0 SENSITIVE IIIC G2 Suboptimal LIVING 22.8 yes 19.8 NA "2,474.3" "1,277.4" 569.5 149.3 0.959 0.534 0.273 0.061 1 0 0 0 0.134903715
TCGA-36-1568 TCGA-discovery Differentiated 52.0 SENSITIVE IIIC G3 unknown LIVING 29.1 yes 18.23333333 NA "2,333.9" "1,544.1" "1,234.1" 279.6 0.802 0.664 0.497 0.172 1 1 0 0 -0.017164553
TCGA-09-1670 TCGA-discovery Differentiated 57.0 SENSITIVE IIIA G3 Optimal LIVING 18.2 yes 18.23333333 NA "1,472.5" "1,485.6" 542.2 937.4 0.632 0.701 0.197 0.350 1 1 0 1 0.04564242
TCGA-23-1030 TCGA-discovery Differentiated 64.0 SENSITIVE IIIC G3 Optimal LIVING 29.5 yes 18.1 NA "1,739.6" "1,042.8" "1,472.2" "1,667.5" 0.670 0.468 0.540 0.677 1 0 1 1 -0.01454578
TCGA-61-1728 TCGA-discovery Differentiated 59.0 SENSITIVE IV G3 Optimal LIVING 28.3 yes 17.76666667 NA "1,648.0" "1,002.9" 838.7 "2,123.8" 0.651 0.397 0.320 0.672 1 0 0 1 -0.015802689
TCGA-57-1584 TCGA-discovery Differentiated 47.0 unknown IIIC G3 Optimal LIVING 21.4 yes 17.66666667 NA "2,628.0" "1,140.6" 317.3 -84.6 0.877 0.545 0.214 0.084 1 0 0 0 0.112893051
TCGA-25-1625 TCGA-discovery Differentiated 66.0 unknown IIIC G3 Optimal DECEASED 18.3 yes 17.53333333 NA "2,849.8" "1,575.6" "1,431.6" -58.8 0.942 0.681 0.527 0.143 1 1 0 0 0.019453773
TCGA-13-0887 TCGA-discovery Differentiated 42.0 SENSITIVE IIIC G3 Optimal LIVING 60 yes 17.1 NA "1,581.3" 808.0 "1,155.2" "1,221.9" 0.711 0.361 0.433 0.532 1 0 0 1 0.002081689
TCGA-04-1536 TCGA-discovery Differentiated 60.0 SENSITIVE IV G3 Optimal DECEASED 29.5 yes 16.6 NA "2,596.0" 621.9 319.7 124.8 0.833 0.394 0.256 0.265 1 0 0 0 0.061646327
TCGA-24-1466 TCGA-discovery Differentiated 74.0 SENSITIVE IIIC G3 Optimal DECEASED 45.8 yes 16.36666667 NA "1,699.1" "1,076.5" 226.6 "1,017.6" 0.716 0.506 0.191 0.454 1 0 0 1 0.049324364
TCGA-23-1023 TCGA-discovery Differentiated 65.0 unknown IIIC G3 Optimal LIVING 41.1 yes 16.33333333 NA "1,479.7" "1,405.5" "1,719.7" 919.6 0.623 0.650 0.659 0.341 1 0 1 1 -0.009422996
TCGA-09-1666 TCGA-discovery Differentiated 57.0 SENSITIVE IIIC G3 Optimal LIVING 58.4 yes 16 NA "1,387.1" "1,768.0" 369.1 "1,283.0" 0.649 0.738 0.313 0.521 1 1 0 1 -0.043209071
TCGA-23-2072 TCGA-discovery Differentiated 58.0 SENSITIVE IV G3 Suboptimal DECEASED 25.3 yes 15.86666667 NA "3,035.3" 450.8 "1,399.9" 811.6 1.000 0.417 0.553 0.295 1 0 0 1 0.105790501
TCGA-24-1105 TCGA-discovery Differentiated 36.0 unknown IIIC G3 Optimal DECEASED 48.1 yes 15.66666667 NA "1,145.3" 611.0 "1,519.3" "1,438.2" 0.504 0.420 0.486 0.547 1 0 1 1 -0.088833793
TCGA-09-1665 TCGA-discovery Differentiated 73.0 SENSITIVE IIIC G2 Optimal DECEASED 42.2 yes 15.6 NA 860.4 971.9 435.1 959.3 0.534 0.575 0.193 0.369 0 0 0 1 -0.065572922
TCGA-13-0912 TCGA-discovery Differentiated 58.0 SENSITIVE IIIC G3 Optimal LIVING 34.5 yes 15.6 NA "1,888.3" -572.6 837.0 "1,424.3" 0.746 0.230 0.360 0.485 1 0 0 1 -0.047431126
TCGA-61-2109 TCGA-discovery Differentiated 40.0 SENSITIVE IIIC G3 Suboptimal DECEASED 21.0 yes 15.5 NA "2,116.7" "1,274.7" 330.8 687.7 0.794 0.579 0.164 0.329 1 0 0 1 0.06313604
TCGA-25-1321 TCGA-discovery Differentiated 65.0 SENSITIVE IIIC G3 Optimal DECEASED 34.4 yes 15.1 NA "1,465.0" 559.4 135.0 "1,311.5" 0.629 0.331 0.241 0.530 1 0 0 1 -0.001086828
TCGA-24-1557 TCGA-discovery Differentiated 49.0 RESISTANT IIIC G3 Suboptimal DECEASED 40.4 yes 14.9 NA "1,668.7" "1,069.7" 521.9 "1,641.9" 0.642 0.495 0.226 0.609 1 0 0 1 0.030884898
TCGA-24-0979 TCGA-discovery Differentiated 53.0 SENSITIVE IV G3 Suboptimal DECEASED 42.1 yes 14.26666667 NA "1,575.1" 405.9 926.3 991.6 0.588 0.266 0.328 0.318 1 0 0 1 0.044992291
TCGA-04-1349 TCGA-discovery Differentiated 69.0 RESISTANT IV G3 unknown DECEASED 21.9 yes 14.16666667 NA "2,335.5" "1,460.8" "1,220.4" 342.9 0.775 0.697 0.458 0.256 1 1 0 0 0.035947275
TCGA-13-0761 TCGA-discovery Differentiated 51.0 SENSITIVE IV G3 Optimal LIVING 34.5 yes 14.1 NA "1,711.2" "1,560.7" "1,308.8" "1,056.9" 0.705 0.754 0.512 0.443 1 1 0 1 -0.034871567
TCGA-24-2024 TCGA-discovery Differentiated 72.0 SENSITIVE IIIC G3 Optimal DECEASED 59.0 yes 14.03333333 NA "1,601.5" 879.7 "1,621.1" "1,624.9" 0.700 0.506 0.605 0.544 1 0 1 1 -0.079143076
TCGA-61-1918 TCGA-discovery Differentiated 45.0 SENSITIVE IV G3 Optimal DECEASED 16.0 yes 13.76666667 NA "1,497.2" "1,344.6" 720.6 765.0 0.534 0.692 0.257 0.236 1 0 0 1 -0.025569491
TCGA-04-1648 TCGA-discovery Differentiated 57.0 SENSITIVE IIIC G2 Optimal DECEASED 29.0 yes 13.73333333 NA "1,896.7" 923.6 784.0 "1,577.0" 0.720 0.496 0.412 0.548 1 0 0 1 0.059609502
TCGA-24-1616 TCGA-discovery Differentiated 56.0 SENSITIVE IIIC G3 Optimal DECEASED 38.8 yes 13.5 NA "1,369.1" 579.4 473.6 "1,090.6" 0.558 0.286 0.272 0.312 1 0 0 1 -0.001482677
TCGA-24-1552 TCGA-discovery Differentiated 77.0 RESISTANT IIIC G3 Optimal DECEASED 42.0 yes 13.43333333 NA "1,525.6" 767.0 640.2 "1,162.0" 0.686 0.374 0.293 0.507 1 0 0 1 0.005834571
TCGA-13-0726 TCGA-discovery Differentiated 55.0 SENSITIVE IIIC GX Optimal DECEASED 31.5 yes 13.06666667 NA "2,204.4" 708.6 "1,216.9" 475.5 0.813 0.403 0.524 0.230 1 0 0 0 0.04477334
TCGA-36-1570 TCGA-discovery Differentiated 49.0 SENSITIVE IIIC G3 Suboptimal LIVING 21.8 yes 12.5 NA "1,619.1" 974.4 142.5 94.2 0.689 0.501 0.104 0.346 1 0 0 0 0.054809068
TCGA-04-1517 TCGA-discovery Differentiated 79.0 SENSITIVE IIIC G3 Suboptimal DECEASED 20.3 yes 11.63333333 NA "1,942.4" -18.1 629.5 "1,026.6" 0.619 0.168 0.260 0.414 1 0 0 1 0.014449994
TCGA-30-1880 TCGA-discovery Differentiated 56.0 SENSITIVE IIIC G3 Optimal DECEASED 58.4 yes 11.6 NA "2,266.4" "1,304.3" "1,158.1" 593.4 0.834 0.521 0.389 0.226 1 0 0 1 -0.00756702
TCGA-24-1923 TCGA-discovery Differentiated 51.0 SENSITIVE IIIC G3 Optimal DECEASED 23.0 yes 11.43333333 NA "1,551.5" 458.2 "1,675.2" "1,658.1" 0.665 0.308 0.622 0.585 1 0 1 1 -0.029442858
TCGA-29-1696 TCGA-discovery Differentiated 43.0 RESISTANT IIIC G2 Optimal DECEASED 34.2 yes 11.4 NA "2,189.5" 793.6 34.6 237.3 0.791 0.409 0.146 0.190 1 0 0 0 0.116076818
TCGA-13-0803 TCGA-discovery Differentiated 81.0 unknown IIIC G3 Optimal DECEASED 44.4 yes 11.2 NA "2,386.3" "1,048.1" 875.5 -272.2 0.850 0.485 0.362 0.106 1 0 0 0 0.095928807
TCGA-13-0904 TCGA-discovery Differentiated 63.0 RESISTANT IIIC G3 Suboptimal LIVING 49.0 yes 10.96666667 NA "2,446.0" 667.0 -250.5 -414.8 0.848 0.379 0.235 0.163 1 0 0 0 0.057835862
TCGA-13-0804 TCGA-discovery Differentiated 73.0 RESISTANT IIIC G3 Optimal DECEASED 35.8 yes 10.96666667 NA "2,092.4" "1,530.4" 132.5 844.1 0.787 0.705 0.255 0.338 1 1 0 1 0.004568319
TCGA-61-1901 TCGA-discovery Differentiated 65.0 RESISTANT IV G3 unknown DECEASED 11.6 yes 10.96666667 NA "2,700.7" "1,228.0" "1,004.2" 642.4 0.932 0.578 0.432 0.148 1 0 0 1 0.105332027
TCGA-24-1464 TCGA-discovery Differentiated 70.0 RESISTANT IIIC G3 Suboptimal DECEASED 12.6 yes 10.76666667 NA 869.1 "1,072.4" 793.0 "1,103.0" 0.477 0.536 0.212 0.389 1 0 0 1 0.0136084
TCGA-25-2409 TCGA-discovery Differentiated 71.0 unknown IV G3 Optimal DECEASED 27.3 yes 10.1 NA "2,186.1" "1,631.7" "1,502.3" 470.9 0.896 0.756 0.619 0.099 1 1 1 0 -0.04084776
TCGA-10-0931 TCGA-discovery Differentiated 44.0 RESISTANT IIIC G3 Optimal DECEASED 32.7 yes 10 NA "1,465.9" 834.0 98.8 422.9 0.647 0.369 0.187 0.306 1 0 0 0 0.095098064
TCGA-04-1638 TCGA-discovery Differentiated 57.0 RESISTANT IV G3 Optimal DECEASED 56.2 yes 9.933333333 NA "2,073.8" -142.1 809.3 655.3 0.720 0.285 0.438 0.406 1 0 0 1 0.02325211
TCGA-13-0720 TCGA-discovery Differentiated 48.0 RESISTANT IIIC G3 Optimal DECEASED 45.2 yes 9.733333333 NA "2,464.0" 857.8 189.9 60.4 0.948 0.441 0.263 0.188 1 0 0 0 0.155497966
TCGA-13-0791 TCGA-discovery Differentiated 58.0 RESISTANT IIIC G3 Optimal LIVING 39.5 yes 9.366666667 NA "1,401.1" "1,338.1" 946.5 "1,329.9" 0.639 0.623 0.350 0.381 1 0 0 1 0.008069428
TCGA-25-1314 TCGA-discovery Differentiated 42.0 unknown IV G3 Optimal DECEASED 32.4 yes 9.1 NA "1,499.5" "1,111.9" "1,026.2" 173.6 0.576 0.459 0.350 0.341 1 0 0 0 0.005486517
TCGA-13-1500 TCGA-discovery Differentiated 71.0 RESISTANT IIIC G3 Suboptimal DECEASED 14.2 yes 8.433333333 NA "1,431.3" "1,097.5" "1,351.4" "1,013.9" 0.710 0.557 0.548 0.402 1 0 0 1 0.041743987
TCGA-30-1714 TCGA-discovery Differentiated 68.0 RESISTANT IV G3 Optimal DECEASED 38.6 yes 8.033333333 NA "1,574.0" -22.4 324.2 "1,801.9" 0.589 0.189 0.179 0.507 1 0 0 1 -0.066023191
TCGA-61-1906 TCGA-discovery Differentiated 55.0 RESISTANT IIIC G3 Suboptimal DECEASED 34.6 yes 7.866666667 NA "1,812.2" "1,346.3" 547.8 722.6 0.740 0.656 0.312 0.313 1 0 0 1 -0.002305217
TCGA-10-0937 TCGA-discovery Differentiated 44.0 RESISTANT IIIC G3 Optimal DECEASED 15.3 yes 7.833333333 NA "2,006.4" "1,428.2" 787.4 782.9 0.784 0.574 0.290 0.259 1 1 0 1 0.033391533
TCGA-24-1562 TCGA-discovery Differentiated 67.0 RESISTANT IIIC G3 Optimal DECEASED 46.1 yes 7.6 NA "1,938.8" "1,127.8" "1,717.0" "1,192.2" 0.834 0.516 0.703 0.435 1 0 1 1 -0.101327618
TCGA-04-1362 TCGA-discovery Differentiated 59.0 RESISTANT IIC G3 Optimal DECEASED 44.9 yes 7.433333333 NA "2,274.8" "1,143.6" 521.7 "1,531.9" 0.803 0.526 0.301 0.490 1 0 0 1 0.088912018
TCGA-61-2110 TCGA-discovery Differentiated 56.0 RESISTANT IIIC unknown Optimal DECEASED 45.1 yes 7.1 NA "2,039.5" 440.8 606.0 "1,617.5" 0.721 0.327 0.380 0.594 1 0 0 1 -0.024827854
TCGA-24-1431 TCGA-discovery Differentiated 67.0 RESISTANT IIIC G3 Optimal DECEASED 19.4 yes 6.633333333 NA "1,870.5" "1,070.4" 100.6 87.2 0.756 0.530 0.121 0.213 1 0 0 0 0.00908901
TCGA-25-1318 TCGA-discovery Differentiated 54.0 RESISTANT IIIC G3 Optimal DECEASED 35.5 yes 6.166666667 NA "2,715.6" 846.6 "1,566.2" 496.1 0.817 0.464 0.640 0.128 1 0 1 0 -0.031307329
TCGA-04-1356 TCGA-discovery Differentiated 62.0 unknown IIC G3 unknown DECEASED 50.0 yes 5.2 NA 938.9 -123.4 890.9 "1,136.2" 0.416 0.176 0.394 0.500 1 0 0 1 -0.050510142
TCGA-24-1565 TCGA-discovery Differentiated 74.0 RESISTANT IIIC G3 Optimal DECEASED 10.4 yes 4.833333333 NA "2,177.5" "1,478.7" -216.7 -272.2 0.831 0.685 0.202 0.187 1 1 0 0 0.036708121
TCGA-24-0980 TCGA-discovery Differentiated 53.0 RESISTANT IIIC G3 Suboptimal DECEASED 7.8 yes 4.833333333 NA "2,636.9" "2,057.0" "1,555.2" -921.4 0.909 0.797 0.554 0.000 1 1 1 0 -0.050418246
TCGA-23-1028 TCGA-discovery Differentiated 43.0 RESISTANT IIIC G3 Optimal LIVING 50.1 yes 4.433333333 NA "1,770.4" 838.2 338.8 "1,065.6" 0.747 0.507 0.243 0.385 1 0 0 1 0.049511831
TCGA-23-1027 TCGA-discovery Differentiated 48.0 RESISTANT IIIC G3 Optimal DECEASED 32.2 yes 3.8 NA "2,061.5" "1,262.1" "1,631.1" 520.1 0.867 0.659 0.698 0.294 1 0 1 1 -0.10533727
TCGA-10-0934 TCGA-discovery Differentiated 51.0 RESISTANT IIIC G3 Optimal DECEASED 3.9 yes 3.666666667 NA "2,285.5" "-1,236.0" -418.4 217.2 0.739 0.157 0.151 0.293 1 0 0 0 0.005648883
TCGA-13-0724 TCGA-discovery Differentiated 72.0 RESISTANT IV G3 Optimal DECEASED 2.8 yes 2.766666667 NA "1,583.4" 288.3 "1,360.6" "1,753.2" 0.728 0.262 0.445 0.572 1 0 0 1 -0.033694428
TCGA-04-1357 TCGA-discovery Immunoreactive 52.0 unknown IIIB G3 unknown LIVING unknown unknown unknown NA "1,958.3" "2,905.3" "1,098.7" 127.0 0.765 0.948 0.406 0.169 1 1 0 0 0.184202092
TCGA-13-0885 TCGA-discovery Immunoreactive 70.0 SENSITIVE IIIC G3 Suboptimal LIVING 60 unknown unknown NA "1,223.9" "2,651.1" "1,019.6" 314.3 0.601 0.931 0.357 0.263 1 1 0 0 0.170057029
TCGA-61-2094 TCGA-discovery Immunoreactive 63.0 SENSITIVE IIIC G3 unknown LIVING 60 unknown unknown NA "1,880.4" "3,334.5" 796.7 427.7 0.718 1.000 0.409 0.326 1 1 0 0 0.209415448
TCGA-61-1915 TCGA-discovery Immunoreactive 50.0 SENSITIVE IIC G3 unknown LIVING 60 unknown unknown NA "1,424.1" "2,067.1" 346.0 609.5 0.514 0.815 0.219 0.347 1 1 0 1 0.078518173
TCGA-04-1346 TCGA-discovery Immunoreactive 73.0 unknown IIIC G2 unknown LIVING 60 unknown unknown NA "1,568.4" "2,477.0" 777.1 "1,352.8" 0.663 0.869 0.379 0.484 1 1 0 1 0.095369909
TCGA-13-0889 TCGA-discovery Immunoreactive 75.0 SENSITIVE IV GX Optimal LIVING 60 unknown unknown NA "1,394.0" "2,219.0" "1,234.3" "1,023.3" 0.633 0.841 0.470 0.413 1 1 0 1 0.062149061
TCGA-09-1668 TCGA-discovery Immunoreactive 57.0 unknown IIIC G3 unknown LIVING 56.1 unknown unknown NA "1,184.2" "2,061.4" "1,656.7" "1,847.7" 0.547 0.873 0.636 0.681 1 1 1 1 0.064736864
TCGA-61-1913 TCGA-discovery Immunoreactive 48.0 SENSITIVE IIIB G3 Optimal LIVING 49.6 unknown unknown NA "1,235.6" "2,311.8" -116.7 280.4 0.501 0.875 0.118 0.180 1 1 0 0 0.178312382
TCGA-29-2428 TCGA-discovery Immunoreactive 58.0 unknown IIIC G3 Suboptimal LIVING 45.7 unknown unknown NA 908.1 "1,715.8" "1,102.1" "1,271.1" 0.463 0.833 0.428 0.583 1 1 0 1 0.077298085
TCGA-24-2281 TCGA-discovery Immunoreactive 68.0 unknown IIA G3 Optimal LIVING 45.2 unknown unknown NA "1,144.1" "2,277.6" "1,049.2" "1,089.6" 0.458 0.924 0.426 0.433 1 1 0 1 0.175890342
TCGA-31-1956 TCGA-discovery Immunoreactive 60.0 unknown IIIB G3 unknown LIVING 44.7 unknown unknown NA "1,319.8" "3,485.8" "2,421.8" 944.6 0.608 0.985 0.866 0.304 1 1 1 1 -0.005945026
TCGA-24-2026 TCGA-discovery Immunoreactive 79.0 unknown IIIC G3 Suboptimal DECEASED 35.3 unknown unknown NA "1,694.1" "1,657.6" 291.3 377.1 0.695 0.764 0.242 0.329 1 1 0 0 0.123956596
TCGA-29-1711 TCGA-discovery Immunoreactive 45.0 SENSITIVE IIIC G2 Optimal LIVING 35.1 unknown unknown NA "1,576.4" "2,100.3" "1,309.4" "1,373.0" 0.611 0.822 0.466 0.392 1 1 0 1 0.100438487
TCGA-23-1123 TCGA-discovery Immunoreactive 59.0 unknown IIIC G3 Suboptimal DECEASED 33.9 unknown unknown NA 668.8 "2,397.9" 447.0 "2,373.6" 0.363 0.899 0.427 0.792 0 1 0 1 0.118097717
TCGA-61-2012 TCGA-discovery Immunoreactive 81.0 unknown IIC G2 unknown LIVING 31.1 unknown unknown NA "1,358.5" "1,966.0" "1,293.3" "1,823.0" 0.536 0.860 0.562 0.603 1 1 0 1 0.119309338
TCGA-20-0991 TCGA-discovery Immunoreactive 78.0 unknown IIB G3 Optimal LIVING 26.6 unknown unknown NA 695.2 "3,386.9" "1,275.3" "1,642.8" 0.429 0.959 0.542 0.636 0 1 0 1 0.260906831
TCGA-57-1994 TCGA-discovery Immunoreactive 63.0 unknown unknown unknown unknown LIVING 25.4 unknown unknown NA "1,581.9" "2,013.8" 766.4 "2,160.4" 0.601 0.860 0.324 0.719 1 1 0 1 0.091514063
TCGA-30-1887 TCGA-discovery Immunoreactive 67.0 unknown IIIC G2 Optimal DECEASED 24.6 unknown unknown NA "1,155.6" "2,796.2" "2,530.7" "1,420.9" 0.541 0.909 0.785 0.484 1 1 1 1 -0.080275632
TCGA-29-1769 TCGA-discovery Immunoreactive 40.0 SENSITIVE IIIC G3 Optimal LIVING 23.3 unknown unknown NA "1,373.3" "1,330.4" "1,591.5" "1,431.0" 0.585 0.636 0.573 0.460 1 0 1 1 -0.024998674
TCGA-24-0968 TCGA-discovery Immunoreactive 59.0 SENSITIVE IIIC G3 Optimal DECEASED 19.9 unknown unknown NA "1,245.2" "1,924.6" "1,869.4" "1,588.6" 0.569 0.877 0.751 0.582 1 1 1 1 0.049793924
TCGA-61-2002 TCGA-discovery Immunoreactive 46.0 unknown IIIC G3 Suboptimal LIVING 18.2 unknown unknown NA "1,477.7" "2,499.2" "2,151.5" "1,400.3" 0.629 0.941 0.747 0.378 1 1 1 1 -0.01166554
TCGA-29-1761 TCGA-discovery Immunoreactive 80.0 SENSITIVE IIIC G3 Suboptimal DECEASED 17.2 unknown unknown NA 719.1 "1,573.3" 824.3 "1,722.0" 0.377 0.688 0.273 0.492 0 1 0 1 0.091834493
TCGA-20-1685 TCGA-discovery Immunoreactive 45.0 SENSITIVE IIIC G3 Optimal LIVING 16.9 unknown unknown NA "1,013.4" "1,973.9" 425.9 "1,111.6" 0.404 0.801 0.220 0.410 1 1 0 1 0.08677777
TCGA-13-0760 TCGA-discovery Immunoreactive 63.0 unknown IV G3 Optimal DECEASED 11.7 unknown unknown NA "1,429.0" "2,590.0" -26.7 347.8 0.726 0.879 0.226 0.154 1 1 0 0 0.116040124
TCGA-24-1847 TCGA-discovery Immunoreactive 45.0 unknown IV G3 Optimal LIVING 11.4 unknown unknown NA "2,450.3" "2,513.8" "1,296.8" -3.8 0.865 0.948 0.563 0.144 1 1 0 0 0.119597582
TCGA-13-2060 TCGA-discovery Immunoreactive 51.0 unknown IV G3 Optimal LIVING 8.7 unknown unknown NA 582.9 "1,950.8" "1,560.2" "1,431.4" 0.355 0.887 0.586 0.600 0 1 1 1 0.118035096
TCGA-24-1436 TCGA-discovery Immunoreactive 57.0 RESISTANT IIIC G3 Optimal DECEASED 8.7 unknown unknown NA "1,592.3" "2,236.4" "1,445.4" 877.1 0.735 0.914 0.599 0.410 1 1 1 1 0.067707973
TCGA-29-1781 TCGA-discovery Immunoreactive 69.0 unknown IIIC G3 Optimal LIVING 8.5 unknown unknown NA "1,127.7" "3,010.9" 541.7 "1,680.0" 0.363 0.950 0.321 0.549 1 1 0 1 0.204312285
TCGA-24-1842 TCGA-discovery Immunoreactive 49.0 unknown IIIC G3 Optimal LIVING 8.4 unknown unknown NA "1,559.9" "2,208.9" "1,168.5" "1,032.1" 0.582 0.893 0.469 0.329 1 1 0 1 0.169408123
TCGA-13-0801 TCGA-discovery Immunoreactive 46.0 unknown IIIC G3 Optimal LIVING 8.4 unknown unknown NA "1,966.1" "2,947.8" 486.8 514.2 0.736 0.969 0.350 0.277 1 1 0 1 0.193650494
TCGA-25-1630 TCGA-discovery Immunoreactive 73.0 unknown IIIC G3 Optimal DECEASED 8.0 unknown unknown NA "1,485.0" "1,779.0" "1,463.3" "1,658.1" 0.666 0.718 0.536 0.453 1 1 1 1 0.073370424
TCGA-24-1417 TCGA-discovery Immunoreactive 54.0 unknown IV G3 Optimal LIVING 7.9 unknown unknown NA 724.8 "2,419.1" "1,697.0" 975.8 0.377 0.943 0.641 0.405 0 1 1 1 0.124174351
TCGA-09-2044 TCGA-discovery Immunoreactive 77.0 unknown IIB G3 Optimal LIVING 6.2 unknown unknown NA 406.9 "2,181.5" 701.0 "2,119.5" 0.304 0.881 0.372 0.631 0 1 0 1 0.129513365
TCGA-13-0924 TCGA-discovery Immunoreactive 45.0 unknown IV G3 Optimal LIVING 6.2 unknown unknown NA "1,535.1" "1,931.0" "1,636.5" "1,513.0" 0.696 0.775 0.658 0.513 1 1 1 1 0.05760569
TCGA-29-1784 TCGA-discovery Immunoreactive 55.0 unknown IIIC G3 Optimal LIVING 5.4 unknown unknown NA 981.9 "2,345.8" 436.2 "1,754.2" 0.341 0.849 0.265 0.519 1 1 0 1 0.154869982
TCGA-13-1507 TCGA-discovery Immunoreactive 77.0 unknown IIIC G3 Optimal LIVING 4.8 unknown unknown NA "1,233.3" "2,746.7" "1,791.8" "1,447.1" 0.482 0.935 0.578 0.579 1 1 1 1 0.048463134
TCGA-13-1410 TCGA-discovery Immunoreactive 57.0 unknown IV GX unknown LIVING 4.8 unknown unknown NA "1,118.9" "1,780.1" "1,633.5" "1,086.9" 0.578 0.779 0.618 0.483 1 1 1 1 0.001013416
TCGA-24-1846 TCGA-discovery Immunoreactive 45.0 unknown IIIC G3 Optimal LIVING 4.4 unknown unknown NA "1,184.7" "1,999.4" "1,514.1" 963.3 0.556 0.781 0.595 0.340 1 1 1 1 0.061015489
TCGA-23-1120 TCGA-discovery Immunoreactive 60.0 unknown IIIC G3 Optimal LIVING 4.3 unknown unknown NA "1,388.2" "2,216.2" "1,201.3" 998.4 0.635 0.886 0.508 0.396 1 1 0 1 0.083293033
TCGA-13-1496 TCGA-discovery Immunoreactive 65.0 unknown IIIC G3 Suboptimal DECEASED 4.3 unknown unknown NA "1,281.5" "2,450.8" 129.9 "1,110.4" 0.657 0.899 0.194 0.411 1 1 0 1 0.178719564
TCGA-24-1843 TCGA-discovery Immunoreactive 67.0 unknown IIIC G3 Optimal LIVING 3.5 unknown unknown NA 442.5 "2,147.7" "1,019.9" "2,071.2" 0.249 0.859 0.401 0.703 0 1 0 1 0.167900226
TCGA-24-1470 TCGA-discovery Immunoreactive 54.0 unknown IIIB G3 Optimal LIVING 3.5 unknown unknown NA "1,925.4" "2,401.7" 702.1 561.3 0.764 0.930 0.335 0.278 1 1 0 1 0.155888473
TCGA-25-2396 TCGA-discovery Immunoreactive 71.0 unknown IIIC G3 Optimal DECEASED 3.1 unknown unknown NA "1,205.4" "1,703.5" 994.0 "1,826.3" 0.606 0.804 0.442 0.643 1 1 0 1 0.11018973
TCGA-25-1322 TCGA-discovery Immunoreactive 62.0 RESISTANT IV G3 Suboptimal DECEASED 3.0 unknown unknown NA "1,664.4" "1,780.7" "1,491.5" 959.6 0.680 0.780 0.543 0.315 1 1 1 1 0.056779055
TCGA-30-1855 TCGA-discovery Immunoreactive 61.0 unknown IIIC G3 Optimal DECEASED 2.5 unknown unknown NA "1,097.5" "1,819.8" "1,971.9" "2,149.1" 0.536 0.840 0.790 0.661 1 1 1 1 -0.065545179
TCGA-61-1740 TCGA-discovery Immunoreactive 71.0 unknown IIIC G3 Suboptimal DECEASED 2.5 unknown unknown NA 975.7 "2,716.5" "1,013.0" "1,383.4" 0.452 0.972 0.432 0.429 1 1 0 1 0.192315269
TCGA-61-1995 TCGA-discovery Immunoreactive 43.0 RESISTANT IIIC G3 Optimal LIVING 2.0 unknown unknown NA "1,608.8" "1,821.1" "1,064.5" "2,112.1" 0.673 0.828 0.516 0.763 1 1 0 1 0.042871803
TCGA-61-1895 TCGA-discovery Immunoreactive 52.0 SENSITIVE IIIB G3 Optimal LIVING 1.4 unknown unknown NA "1,354.7" "2,671.6" "1,805.1" "1,491.0" 0.475 0.899 0.577 0.444 1 1 1 1 0.097652991
TCGA-25-2392 TCGA-discovery Immunoreactive 75.0 unknown IV G3 Suboptimal DECEASED 1.0 unknown unknown NA "1,159.1" "2,481.6" 852.4 "1,807.8" 0.577 0.886 0.342 0.572 1 1 0 1 0.121973139
TCGA-24-2288 TCGA-discovery Immunoreactive 70.0 RESISTANT IIIC G3 Suboptimal DECEASED 0.8 unknown unknown NA "1,907.6" "1,928.2" "1,658.0" "1,469.0" 0.733 0.851 0.664 0.492 1 1 1 1 -0.002460874
TCGA-24-2261 TCGA-discovery Immunoreactive 76.0 unknown IIIC G3 Suboptimal DECEASED 0.8 unknown unknown NA "1,583.8" "2,488.0" "1,240.3" "1,001.4" 0.610 0.966 0.580 0.334 1 1 0 1 0.139723243
TCGA-29-1699 TCGA-discovery Immunoreactive 57.0 unknown IIIC G3 Optimal DECEASED 0.5 unknown unknown NA "1,144.4" "2,957.3" 955.4 "1,276.9" 0.522 0.963 0.377 0.456 1 1 0 1 0.218096618
TCGA-59-2351 TCGA-discovery Immunoreactive 51.0 unknown IIIC G3 Optimal LIVING 60 no 60 NA "1,181.5" "1,779.9" "1,508.1" 555.7 0.583 0.849 0.582 0.307 1 1 1 1 0.075141561
TCGA-61-2104 TCGA-discovery Immunoreactive 53.0 unknown IIC G2 Optimal LIVING 60 yes 56 NA "2,262.2" "2,070.7" 738.5 904.5 0.872 0.907 0.310 0.291 1 1 0 1 0.067765581
TCGA-61-1914 TCGA-discovery Immunoreactive 65.0 SENSITIVE IIIC G3 Suboptimal LIVING 57.4 yes 55.76666667 NA "1,191.6" "1,914.9" "1,095.5" "1,191.1" 0.371 0.759 0.385 0.374 1 1 0 1 0.098797751
TCGA-29-2427 TCGA-discovery Immunoreactive 60.0 unknown IIIC G3 Suboptimal LIVING 60 yes 52.7 NA "2,180.9" "3,180.9" "1,384.9" 203.8 0.783 0.981 0.522 0.125 1 1 0 0 0.199351026
TCGA-04-1365 TCGA-discovery Immunoreactive 87.0 unknown IIIB G3 unknown LIVING 60 yes 44.26666667 NA "1,072.0" "2,081.8" 628.4 "1,858.6" 0.481 0.863 0.376 0.637 1 1 0 1 0.160704061
TCGA-23-2077 TCGA-discovery Immunoreactive 45.0 SENSITIVE IIIC G3 Optimal LIVING 60 yes 41.06666667 NA "1,348.3" "1,811.7" "1,461.9" "2,070.5" 0.617 0.814 0.549 0.699 1 1 1 1 0.030893719
TCGA-29-1707 TCGA-discovery Immunoreactive 41.0 SENSITIVE IIC G3 Optimal LIVING 42.5 yes 40 NA "1,500.4" "2,259.9" 18.8 729.5 0.610 0.873 0.258 0.295 1 1 0 1 0.107975748
TCGA-24-1549 TCGA-discovery Immunoreactive 58.0 unknown IIIB G3 unknown DECEASED 57.4 yes 34.73333333 NA 679.6 "1,878.5" 823.2 "1,508.0" 0.478 0.741 0.416 0.545 0 1 0 1 0.082998535
TCGA-25-1878 TCGA-discovery Immunoreactive 60.0 unknown IIIC G3 Optimal LIVING 60 yes 32.36666667 NA "1,175.5" "3,024.1" 365.0 704.7 0.491 0.949 0.299 0.260 1 1 0 1 0.210848994
TCGA-61-1911 TCGA-discovery Immunoreactive 55.0 SENSITIVE IIA G3 unknown LIVING 43.1 yes 28.1 NA "1,791.7" "2,610.1" 598.1 750.4 0.686 0.923 0.282 0.267 1 1 0 1 0.150316146
TCGA-61-1725 TCGA-discovery Immunoreactive 40.0 SENSITIVE IIIC G3 Suboptimal LIVING 31.8 yes 28.1 NA "1,126.6" "1,537.1" "1,544.0" "1,365.3" 0.490 0.633 0.527 0.419 1 1 1 1 -0.053099707
TCGA-13-0792 TCGA-discovery Immunoreactive 40.0 SENSITIVE IIIC G3 Optimal LIVING 37.2 yes 27.2 NA "1,951.2" "1,989.6" -111.0 934.8 0.755 0.764 0.166 0.246 1 1 0 1 0.091369927
TCGA-24-1551 TCGA-discovery Immunoreactive 53.0 SENSITIVE IIIC G3 Optimal DECEASED 52.6 yes 25.46666667 NA "1,577.0" "2,374.1" 748.1 "1,111.5" 0.769 0.841 0.364 0.446 1 1 0 1 0.118774679
TCGA-61-1907 TCGA-discovery Immunoreactive 63.0 SENSITIVE IIIC G3 Suboptimal LIVING 31.7 yes 24.76666667 NA "1,247.4" "2,624.1" 323.5 "1,463.6" 0.544 0.968 0.217 0.486 1 1 0 1 0.192939299
TCGA-36-1581 TCGA-discovery Immunoreactive 63.0 SENSITIVE IIC G3 Optimal LIVING 25.0 yes 23.4 NA 913.3 "2,379.8" "1,299.0" "1,097.7" 0.346 0.906 0.528 0.527 1 1 0 1 0.212531324
TCGA-36-1574 TCGA-discovery Immunoreactive 48.0 SENSITIVE IIIC G3 Suboptimal LIVING 22.9 yes 21.6 NA "1,532.5" "1,785.9" "1,628.2" "1,269.4" 0.621 0.800 0.660 0.465 1 1 1 1 0.037783465
TCGA-23-2084 TCGA-discovery Immunoreactive 45.0 SENSITIVE IV G3 Optimal DECEASED 50.5 yes 20.63333333 NA "1,708.9" "1,911.8" "1,275.6" 466.2 0.778 0.837 0.519 0.262 1 1 0 0 0.072023169
TCGA-09-2051 TCGA-discovery Immunoreactive 42.0 unknown IIIC G3 Optimal LIVING 60 yes 19.43333333 NA "1,880.2" "2,345.0" 696.1 "1,410.0" 0.806 0.922 0.293 0.524 1 1 0 1 0.138562524
TCGA-04-1348 TCGA-discovery Immunoreactive 44.0 SENSITIVE IIIB G3 Optimal DECEASED 49.4 yes 19.13333333 NA "1,313.9" "2,345.5" 662.1 "1,228.8" 0.617 0.950 0.304 0.460 1 1 0 1 0.202464242
TCGA-24-1553 TCGA-discovery Immunoreactive 53.0 SENSITIVE IIIB G3 Optimal DECEASED 58.9 yes 18.43333333 NA "1,821.7" "2,527.4" "1,182.3" "1,565.9" 0.685 0.923 0.475 0.540 1 1 0 1 0.083111121
TCGA-13-0897 TCGA-discovery Immunoreactive 54.0 SENSITIVE IIIC G3 Optimal LIVING 58.3 yes 18.43333333 NA "1,843.2" "1,923.5" "1,863.0" 808.5 0.741 0.758 0.671 0.309 1 1 1 1 -0.007068309
TCGA-24-1556 TCGA-discovery Immunoreactive 50.0 unknown IIB G3 Optimal LIVING 60 yes 18.3 NA "1,099.4" "1,868.4" 875.7 "1,644.6" 0.406 0.786 0.411 0.551 1 1 0 1 0.134112651
TCGA-24-1930 TCGA-discovery Immunoreactive 53.0 unknown IIIC G3 Optimal LIVING 60 yes 18.1 NA "1,861.3" "2,738.2" "1,856.0" 365.8 0.714 0.938 0.706 0.172 1 1 1 0 0.049394597
TCGA-24-2029 TCGA-discovery Immunoreactive 75.0 SENSITIVE IIIC G3 Suboptimal DECEASED 14.6 yes 17.86666667 NA "1,992.5" "2,291.3" "2,122.1" "1,471.7" 0.657 0.885 0.747 0.421 1 1 1 1 -0.096481946
TCGA-13-1498 TCGA-discovery Immunoreactive 73.0 SENSITIVE IIIC G3 Suboptimal LIVING 38.1 yes 17.76666667 NA "1,461.2" "1,871.8" "1,115.7" "1,267.6" 0.730 0.791 0.383 0.349 1 1 0 1 0.066831657
TCGA-24-2267 TCGA-discovery Immunoreactive 58.0 SENSITIVE IIB G3 Optimal DECEASED 48.2 yes 17.06666667 NA "1,949.1" "2,817.9" "1,060.7" 503.9 0.859 0.995 0.389 0.340 1 1 0 0 0.188133202
TCGA-24-1435 TCGA-discovery Immunoreactive 57.0 SENSITIVE IIIC G3 Optimal DECEASED 44.1 yes 16.83333333 NA "1,068.5" "1,896.4" "2,119.5" "1,359.9" 0.495 0.835 0.819 0.505 1 1 1 1 -0.082521362
TCGA-13-1484 TCGA-discovery Immunoreactive 62.0 SENSITIVE IIIC G3 unknown LIVING 60 yes 16.53333333 NA "1,405.0" "2,622.3" 897.2 934.4 0.618 0.922 0.366 0.355 1 1 0 1 0.134100414
TCGA-29-1785 TCGA-discovery Immunoreactive 55.0 SENSITIVE IIIC G3 Suboptimal DECEASED 35.1 yes 15.76666667 NA "1,423.2" "2,467.3" "1,024.2" 794.7 0.552 0.923 0.436 0.342 1 1 0 1 0.180564969
TCGA-13-0893 TCGA-discovery Immunoreactive 48.0 RESISTANT IIIC G3 Suboptimal DECEASED 44.0 yes 15.36666667 NA "1,229.3" "1,630.3" "1,065.7" 905.3 0.489 0.730 0.509 0.494 1 1 0 1 0.063283784
TCGA-09-1667 TCGA-discovery Immunoreactive 61.0 SENSITIVE IIC G2 Optimal LIVING 60 yes 15.33333333 NA 570.2 "2,040.7" "1,206.4" "1,687.9" 0.280 0.874 0.431 0.679 0 1 0 1 0.137798113
TCGA-24-1428 TCGA-discovery Immunoreactive 50.0 unknown IIIC G3 Optimal LIVING 17.6 yes 14.93333333 NA "1,163.3" "2,223.9" 323.6 458.2 0.533 0.870 0.249 0.365 1 1 0 0 0.177952403
TCGA-20-0987 TCGA-discovery Immunoreactive 61.0 unknown IIIC G3 Optimal DECEASED 23.4 yes 14.73333333 NA "1,844.2" "3,238.4" 822.5 -442.3 0.740 0.976 0.433 0.213 1 1 0 0 0.190106467
TCGA-30-1860 TCGA-discovery Immunoreactive 58.0 SENSITIVE IIIC G3 Suboptimal DECEASED 45.5 yes 13.23333333 NA "1,051.4" "2,989.1" "1,246.0" "1,295.1" 0.439 0.978 0.466 0.488 1 1 0 1 0.224423225
TCGA-25-1313 TCGA-discovery Immunoreactive 62.0 SENSITIVE IV G3 Optimal DECEASED 27.3 yes 13.13333333 NA "2,103.5" "2,059.1" "1,303.4" 269.6 0.728 0.831 0.544 0.253 1 1 0 0 0.034292625
TCGA-13-1488 TCGA-discovery Immunoreactive 59.0 SENSITIVE IV G3 Suboptimal LIVING 60 yes 11.7 NA "1,140.2" "1,756.2" 913.6 "1,295.1" 0.589 0.720 0.342 0.480 1 1 0 1 0.103998708
TCGA-31-1950 TCGA-discovery Immunoreactive 76.0 SENSITIVE IIIC G2 Optimal LIVING 19.0 yes 11.63333333 NA "1,546.9" "2,109.7" 263.7 "1,344.6" 0.655 0.854 0.265 0.431 1 1 0 1 0.132421017
TCGA-61-2000 TCGA-discovery Immunoreactive 67.0 RESISTANT IIIC G3 Optimal LIVING 14.7 yes 11.3 NA 388.6 "1,733.4" "1,363.2" "1,524.8" 0.465 0.782 0.495 0.530 0 1 0 1 0.101620708
TCGA-24-1474 TCGA-discovery Immunoreactive 57.0 SENSITIVE IIIC G3 Optimal DECEASED 22.5 yes 11.03333333 NA 336.9 "1,416.8" "1,257.8" "2,804.5" 0.217 0.683 0.471 0.875 0 0 0 1 0.017736219
TCGA-13-0795 TCGA-discovery Immunoreactive 66.0 RESISTANT IIIC G3 Suboptimal LIVING 19.8 yes 10.83333333 NA "1,777.7" "2,024.1" 860.8 "1,258.8" 0.759 0.846 0.415 0.273 1 1 0 1 0.127723388
TCGA-24-2290 TCGA-discovery Immunoreactive 56.0 RESISTANT IIIC G3 Optimal DECEASED 36.7 yes 10.8 NA "1,446.5" "2,142.6" 831.5 7.2 0.601 0.869 0.298 0.148 1 1 0 0 0.137690824
TCGA-24-1924 TCGA-discovery Immunoreactive 65.0 unknown IIIC G3 Optimal DECEASED 30.6 yes 10.66666667 NA "1,225.1" "2,513.6" 772.9 998.3 0.470 0.962 0.330 0.370 1 1 0 1 0.204522
TCGA-29-1710 TCGA-discovery Immunoreactive 54.0 unknown IIIC G2 Optimal DECEASED 29.6 yes 10.5 NA "1,929.1" "2,581.1" "1,924.4" 774.7 0.729 0.903 0.734 0.370 1 1 1 1 -0.032212371
TCGA-36-1578 TCGA-discovery Immunoreactive 63.0 unknown IV G3 Suboptimal LIVING 28.2 yes 10.33333333 NA "1,935.2" "2,021.0" 185.3 709.8 0.826 0.856 0.237 0.340 1 1 0 1 0.109686185
TCGA-29-1701 TCGA-discovery Immunoreactive 56.0 RESISTANT IIIC G3 unknown DECEASED 17.1 yes 9.933333333 NA 449.2 "2,235.9" "1,940.2" "2,368.8" 0.398 0.805 0.644 0.714 0 1 1 1 0.01929557
TCGA-23-2079 TCGA-discovery Immunoreactive 46.0 RESISTANT IIIC G3 Optimal LIVING 60 yes 9.433333333 NA "1,484.5" "1,939.6" "1,392.4" "1,340.1" 0.683 0.825 0.546 0.541 1 1 0 1 0.104062638
TCGA-61-1738 TCGA-discovery Immunoreactive 60.0 RESISTANT IIIC G3 Optimal DECEASED 36.3 yes 9.2 NA "1,179.0" "1,997.7" 194.0 "2,389.8" 0.603 0.769 0.244 0.721 1 1 0 1 0.094864524
TCGA-13-0764 TCGA-discovery Immunoreactive 62.0 RESISTANT IV G3 Optimal LIVING 31.5 yes 9.066666667 NA 940.8 "1,725.8" 248.0 "1,511.9" 0.482 0.683 0.216 0.503 1 1 0 1 0.127737665
TCGA-30-1856 TCGA-discovery Immunoreactive 56.0 RESISTANT IIIC G3 Optimal DECEASED 15.9 yes 7.3 NA "1,044.1" "2,592.3" "1,373.3" "1,332.1" 0.465 0.954 0.474 0.402 1 1 0 1 0.172189005
TCGA-13-0723 TCGA-discovery Immunoreactive 63.0 RESISTANT IIIC G3 Suboptimal DECEASED 40.1 yes 7 NA "1,158.8" "2,562.1" 734.4 "1,898.1" 0.517 0.919 0.381 0.628 1 1 0 1 0.181851346
TCGA-09-0366 TCGA-discovery Immunoreactive 55.0 RESISTANT IIIC G3 Optimal DECEASED 58.5 yes 6.3 NA "1,588.6" "2,230.7" 954.2 "1,477.1" 0.700 0.825 0.441 0.383 1 1 0 1 0.075290561
TCGA-29-1688 TCGA-discovery Immunoreactive 39.0 unknown IIIC G2 unknown LIVING 60 yes 6.1 NA "1,602.5" "2,583.2" "1,379.1" 628.3 0.694 0.939 0.554 0.236 1 1 0 1 0.150809151
TCGA-13-0805 TCGA-discovery Immunoreactive 57.0 RESISTANT IIIC G3 Optimal DECEASED 35.8 yes 5.866666667 NA "1,329.4" "1,880.6" "1,608.3" "1,425.6" 0.499 0.697 0.575 0.516 1 1 1 1 -0.039657386
TCGA-31-1953 TCGA-discovery Immunoreactive 52.0 RESISTANT IIIC G3 unknown LIVING 6.8 yes 2.333333333 NA "1,232.8" "2,913.1" "1,975.2" 718.6 0.703 0.970 0.735 0.273 1 1 1 1 0.099011648
TCGA-13-0755 TCGA-discovery Immunoreactive 75.0 RESISTANT IV G3 Optimal DECEASED 2.5 yes 1.133333333 NA "1,276.3" "2,300.6" 532.2 861.9 0.577 0.823 0.270 0.263 1 1 0 1 0.055437812
TCGA-23-2078 TCGA-discovery Mesenchymal 66.0 SENSITIVE IIIC G3 Optimal LIVING 60 unknown unknown NA 562.2 960.9 "2,228.7" "1,810.9" 0.363 0.678 0.837 0.639 0 0 1 1 0.239856414
TCGA-13-1481 TCGA-discovery Mesenchymal 76.0 SENSITIVE IIIC G2 Optimal LIVING 60 unknown unknown NA 771.5 15.2 "2,620.8" "2,205.2" 0.502 0.240 0.941 0.734 0 0 1 1 0.209808974
TCGA-13-0886 TCGA-discovery Mesenchymal 67.0 SENSITIVE IIIC G3 Optimal LIVING 60 unknown unknown NA "1,432.0" "1,939.8" "2,288.3" 893.3 0.684 0.766 0.812 0.255 1 1 1 1 0.106487574
TCGA-13-0890 TCGA-discovery Mesenchymal 56.0 SENSITIVE IIIC G3 Optimal LIVING 60 unknown unknown NA 497.5 "1,438.0" "2,762.2" "1,679.1" 0.326 0.605 0.896 0.633 0 1 1 1 0.191427248
TCGA-24-1546 TCGA-discovery Mesenchymal 46.0 unknown IIIC G3 Optimal LIVING 60 unknown unknown NA "1,475.9" "1,247.1" "2,536.0" 889.3 0.628 0.615 0.893 0.280 1 0 1 1 0.286906676
TCGA-13-0900 TCGA-discovery Mesenchymal 59.0 SENSITIVE IIIC G3 unknown LIVING 57.9 unknown unknown NA 544.2 "1,349.3" "2,472.5" "1,410.9" 0.311 0.704 0.879 0.579 0 0 1 1 0.197004924
TCGA-61-1737 TCGA-discovery Mesenchymal 42.0 SENSITIVE IV G3 Optimal LIVING 45.5 unknown unknown NA "1,531.8" "1,986.7" "2,593.6" "1,732.3" 0.611 0.803 0.891 0.579 1 1 1 1 0.160281179
TCGA-29-1690 TCGA-discovery Mesenchymal 66.0 unknown IIIC G2 Suboptimal DECEASED 45.3 unknown unknown NA "2,683.4" "1,870.0" "1,961.7" 939.4 0.868 0.753 0.715 0.311 1 1 1 1 0.108301341
TCGA-30-1861 TCGA-discovery Mesenchymal 74.0 unknown IIIC G3 Optimal DECEASED 35.3 unknown unknown NA -26.0 -521.4 "2,533.2" "1,648.0" 0.293 0.150 0.868 0.472 0 0 1 1 0.203391963
TCGA-36-1569 TCGA-discovery Mesenchymal 52.0 unknown IIIC G3 Optimal LIVING 29.5 unknown unknown NA 664.7 "1,454.2" "2,341.6" "1,949.1" 0.424 0.658 0.829 0.663 0 1 1 1 0.249730021
TCGA-20-1682 TCGA-discovery Mesenchymal 56.0 SENSITIVE IIIC GX Suboptimal LIVING 27.9 unknown unknown NA "1,164.7" "1,660.1" "2,129.0" "1,371.3" 0.502 0.712 0.753 0.544 1 1 1 1 0.0624384
TCGA-24-0975 TCGA-discovery Mesenchymal 58.0 unknown IIIC G3 Optimal DECEASED 22.1 unknown unknown NA "1,731.8" 454.2 "2,615.7" "1,382.9" 0.749 0.334 0.903 0.457 1 0 1 1 0.308871801
TCGA-24-2293 TCGA-discovery Mesenchymal 47.0 unknown unknown G3 Suboptimal DECEASED 16.9 unknown unknown NA "1,566.7" "2,142.0" "2,989.3" "1,633.0" 0.632 0.861 0.962 0.599 1 1 1 1 0.26255612
TCGA-13-1504 TCGA-discovery Mesenchymal 68.0 SENSITIVE IIIC G3 unknown LIVING 16.8 unknown unknown NA 900.6 "1,807.6" "2,301.5" "1,476.6" 0.390 0.769 0.846 0.517 1 1 1 1 0.135233267
TCGA-13-0919 TCGA-discovery Mesenchymal 52.0 SENSITIVE IIIC G3 Optimal LIVING 15.1 unknown unknown NA "1,553.0" "1,334.5" "2,434.3" "1,017.3" 0.737 0.673 0.852 0.366 1 0 1 1 0.217971147
TCGA-13-0807 TCGA-discovery Mesenchymal 54.0 unknown IIIC G3 Suboptimal DECEASED 13.8 unknown unknown NA 755.9 "1,035.5" "2,101.8" "1,116.8" 0.371 0.425 0.712 0.470 0 0 1 1 0.081530966
TCGA-25-2042 TCGA-discovery Mesenchymal 60.0 SENSITIVE IIIC G3 Suboptimal DECEASED 13.2 unknown unknown NA "1,855.0" 970.7 "3,317.1" "1,415.4" 0.695 0.545 0.981 0.572 1 0 1 1 0.379698643
TCGA-29-1777 TCGA-discovery Mesenchymal 47.0 SENSITIVE IIIC G2 Suboptimal LIVING 12.5 unknown unknown NA "1,333.9" "1,779.9" "2,032.8" "1,385.1" 0.413 0.709 0.675 0.468 1 1 1 1 0.069394197
TCGA-04-1343 TCGA-discovery Mesenchymal 72.0 SENSITIVE IV G3 Suboptimal DECEASED 12.0 unknown unknown NA "1,447.6" 995.1 "2,107.0" "1,594.8" 0.627 0.443 0.721 0.572 1 0 1 1 0.141419387
TCGA-61-1721 TCGA-discovery Mesenchymal 38.0 unknown IV G1 unknown LIVING 11.3 unknown unknown NA 774.8 "1,032.3" "2,857.9" "1,903.0" 0.401 0.550 0.861 0.610 0 0 1 1 0.19144651
TCGA-13-0768 TCGA-discovery Mesenchymal 73.0 unknown IIIC G3 Optimal LIVING 8.5 unknown unknown NA "1,442.3" "2,716.6" "3,077.4" "2,029.3" 0.603 0.882 0.947 0.637 1 1 1 1 0.157255364
TCGA-24-1418 TCGA-discovery Mesenchymal 68.0 unknown IIIC G3 Suboptimal LIVING 8.1 unknown unknown NA 994.5 785.7 "2,268.0" "2,390.7" 0.410 0.379 0.856 0.823 1 0 1 1 0.132474512
TCGA-13-1405 TCGA-discovery Mesenchymal 49.0 unknown IV G3 Optimal LIVING 7.5 unknown unknown NA "2,007.4" "1,597.8" "2,422.1" "1,319.7" 0.769 0.728 0.859 0.546 1 1 1 1 0.145701162
TCGA-29-1783 TCGA-discovery Mesenchymal 58.0 unknown IIIC G3 Optimal LIVING 7.3 unknown unknown NA "1,557.7" "1,703.3" "1,555.0" "1,777.3" 0.630 0.721 0.645 0.561 1 1 1 1 0.068002978
TCGA-61-2102 TCGA-discovery Mesenchymal 74.0 unknown IIIC G3 unknown DECEASED 6.6 unknown unknown NA -819.9 354.0 "2,867.5" "3,605.4" 0.172 0.447 0.833 0.910 0 0 1 1 0.022057941
TCGA-30-1862 TCGA-discovery Mesenchymal 65.0 unknown IV G2 Suboptimal DECEASED 6.2 unknown unknown NA "2,077.2" 864.4 "2,193.3" 791.4 0.725 0.473 0.802 0.268 1 0 1 1 0.229347598
TCGA-24-1425 TCGA-discovery Mesenchymal 45.0 unknown IIIC G3 Optimal LIVING 6.0 unknown unknown NA "1,476.4" "1,382.4" "2,889.7" "1,176.3" 0.595 0.613 0.942 0.438 1 0 1 1 0.304113689
TCGA-13-1408 TCGA-discovery Mesenchymal 59.0 RESISTANT IIIC G3 Suboptimal LIVING 6.0 unknown unknown NA "1,323.5" 431.3 "2,732.4" "1,807.8" 0.482 0.321 0.947 0.692 1 0 1 1 0.290294507
TCGA-24-1849 TCGA-discovery Mesenchymal 80.0 SENSITIVE IIIC G3 Optimal LIVING 5.8 unknown unknown NA "1,588.0" "2,220.6" "2,772.7" "2,053.1" 0.731 0.844 0.928 0.612 1 1 1 1 0.223901154
TCGA-61-1998 TCGA-discovery Mesenchymal 48.0 RESISTANT IIIC G3 Optimal LIVING 5.6 unknown unknown NA "1,195.0" "1,506.2" "2,310.5" "1,816.6" 0.530 0.687 0.853 0.607 1 1 1 1 0.167269073
TCGA-13-1412 TCGA-discovery Mesenchymal 41.0 unknown IV G3 Optimal LIVING 5.4 unknown unknown NA "1,772.1" 144.2 "2,030.3" "1,074.1" 0.762 0.318 0.717 0.491 1 0 1 1 0.125432679
TCGA-24-1427 TCGA-discovery Mesenchymal 58.0 RESISTANT IIIC G3 Suboptimal LIVING 4.9 unknown unknown NA 759.7 "1,066.8" "2,705.6" "2,207.6" 0.468 0.564 0.920 0.771 0 0 1 1 0.289502418
TCGA-23-1116 TCGA-discovery Mesenchymal 83.0 unknown IIIC G3 Suboptimal LIVING 4.6 unknown unknown NA "1,508.9" "1,947.6" "2,671.3" "1,126.5" 0.673 0.801 0.909 0.544 1 1 1 1 0.208294734
TCGA-13-1505 TCGA-discovery Mesenchymal 63.0 unknown IIIC G3 Optimal LIVING 4.3 unknown unknown NA 253.5 486.7 "2,374.5" "2,411.3" 0.170 0.330 0.883 0.853 0 0 1 1 0.086777257
TCGA-13-1411 TCGA-discovery Mesenchymal 81.0 SENSITIVE IIIC G3 Suboptimal LIVING 4.3 unknown unknown NA 743.4 "2,825.5" "2,852.9" "1,217.8" 0.507 0.900 0.935 0.501 0 1 1 1 0.19020753
TCGA-13-1509 TCGA-discovery Mesenchymal 64.0 unknown IV G3 Optimal LIVING 4.2 unknown unknown NA 817.7 870.7 "2,349.1" "2,255.0" 0.340 0.421 0.856 0.710 0 0 1 1 0.140685033
TCGA-61-2003 TCGA-discovery Mesenchymal 53.0 SENSITIVE IIIC G2 Optimal LIVING 4.0 unknown unknown NA "1,647.4" "1,792.9" "2,714.9" "1,584.7" 0.747 0.763 0.905 0.528 1 1 1 1 0.204037393
TCGA-13-1512 TCGA-discovery Mesenchymal 49.0 unknown IIIC G3 Optimal LIVING 3.1 unknown unknown NA 469.2 "1,023.9" "1,437.6" "1,457.6" 0.387 0.658 0.565 0.572 0 0 0 1 0.060635183
TCGA-25-2401 TCGA-discovery Mesenchymal 64.0 unknown IIIC G3 Optimal DECEASED 3.0 unknown unknown NA "1,083.3" "2,656.2" "2,490.7" "1,449.6" 0.551 0.938 0.887 0.497 1 1 1 1 0.133544794
TCGA-25-1329 TCGA-discovery Mesenchymal 76.0 unknown IIIC G3 Suboptimal DECEASED 3.0 unknown unknown NA "1,575.4" 665.5 "1,853.6" "1,332.0" 0.636 0.454 0.675 0.462 1 0 1 1 0.165782988
TCGA-31-1959 TCGA-discovery Mesenchymal 50.0 unknown IV G2 unknown LIVING 2.2 unknown unknown NA 993.0 "2,087.1" "2,649.2" "2,395.5" 0.439 0.825 0.895 0.744 1 1 1 1 0.21277343
TCGA-04-1337 TCGA-discovery Mesenchymal 78.0 unknown IIIC G2 Optimal DECEASED 2.0 unknown unknown NA "1,794.8" 940.2 "2,945.6" "1,583.1" 0.777 0.511 0.960 0.590 1 0 1 1 0.311127844
TCGA-57-1585 TCGA-discovery Mesenchymal 57.0 unknown IIIC G3 Suboptimal DECEASED 1.8 unknown unknown NA 914.9 "1,230.9" "2,698.1" "1,140.6" 0.444 0.616 0.916 0.565 1 0 1 1 0.314848607
TCGA-30-1867 TCGA-discovery Mesenchymal 47.0 unknown IV GX unknown DECEASED 1.2 unknown unknown NA 503.9 "1,792.7" "2,824.5" "2,258.0" 0.193 0.822 0.954 0.719 0 1 1 1 0.223651027
TCGA-29-1695 TCGA-discovery Mesenchymal 62.0 unknown IIIC G2 Suboptimal DECEASED 0.8 unknown unknown NA "1,070.0" "2,243.5" "2,050.0" "1,407.8" 0.372 0.801 0.782 0.549 1 1 1 1 0.116969961
TCGA-24-1422 TCGA-discovery Mesenchymal 82.0 unknown IIIC G3 Optimal DECEASED 0.8 unknown unknown NA "1,656.8" "1,601.9" "2,497.1" "1,020.7" 0.703 0.695 0.918 0.440 1 1 1 1 0.210260999
TCGA-30-1857 TCGA-discovery Mesenchymal 64.0 unknown IV G3 unknown DECEASED 0.3 unknown unknown NA "2,413.5" "1,551.6" "2,461.4" 785.9 0.909 0.668 0.829 0.268 1 1 1 1 0.203278771
TCGA-24-1463 TCGA-discovery Mesenchymal 70.0 SENSITIVE IIIC G3 Suboptimal LIVING 60 yes 32.36666667 NA "1,497.5" "1,764.5" "2,342.8" "1,697.9" 0.677 0.691 0.855 0.588 1 1 1 1 0.155656783
TCGA-30-1718 TCGA-discovery Mesenchymal 44.0 SENSITIVE IIIC G3 Optimal DECEASED 52.6 yes 29.86666667 NA "1,741.7" "1,739.6" "2,005.7" "1,548.1" 0.580 0.735 0.763 0.526 1 1 1 1 0.093604565
TCGA-24-1550 TCGA-discovery Mesenchymal 49.0 SENSITIVE IIIC G3 Optimal DECEASED 41.6 yes 29.73333333 NA -147.1 "1,273.9" "2,896.5" "3,403.8" 0.267 0.701 0.905 0.908 0 0 1 1 0.170117477
TCGA-24-1545 TCGA-discovery Mesenchymal 69.0 SENSITIVE IIIC G3 Suboptimal DECEASED 58.2 yes 28.7 NA "1,188.4" "2,009.9" "2,467.8" "1,473.4" 0.490 0.839 0.877 0.550 1 1 1 1 0.181021486
TCGA-36-1576 TCGA-discovery Mesenchymal 76.0 SENSITIVE IIIC G3 Suboptimal LIVING 30.5 yes 27.2 NA 602.1 "1,705.0" "3,092.0" "2,131.9" 0.466 0.773 0.978 0.741 0 1 1 1 0.318809836
TCGA-29-1764 TCGA-discovery Mesenchymal 49.0 SENSITIVE IIIC G2 Suboptimal LIVING 60 yes 26.4 NA "1,703.1" "1,860.3" "2,249.8" "1,614.1" 0.652 0.780 0.812 0.569 1 1 1 1 0.131257065
TCGA-29-1693 TCGA-discovery Mesenchymal 72.0 SENSITIVE IIIC G3 Suboptimal LIVING 60 yes 23.13333333 NA "1,148.5" "1,611.4" "1,946.0" "1,306.3" 0.486 0.611 0.677 0.412 1 1 1 1 0.091919413
TCGA-13-1494 TCGA-discovery Mesenchymal 43.0 SENSITIVE IV G3 unknown LIVING 38.7 yes 23.1 NA "1,011.8" 887.8 "2,628.2" "1,807.5" 0.511 0.506 0.918 0.585 1 0 1 1 0.28656433
TCGA-10-0930 TCGA-discovery Mesenchymal 70.0 SENSITIVE IIIC G3 Optimal DECEASED 33.7 yes 22.66666667 NA "1,974.6" "1,827.2" "2,007.5" 813.7 0.755 0.680 0.665 0.369 1 1 1 1 0.12027756
TCGA-29-1766 TCGA-discovery Mesenchymal 74.0 SENSITIVE IIIC G2 Suboptimal DECEASED 39.6 yes 22.4 NA 682.0 "1,199.8" "2,311.5" "1,911.7" 0.321 0.561 0.852 0.696 0 0 1 1 0.211851132
TCGA-31-1946 TCGA-discovery Mesenchymal 30.0 SENSITIVE IIIC G3 Optimal LIVING 30.6 yes 22.13333333 NA "1,625.9" "2,248.1" "2,068.9" "1,001.7" 0.696 0.923 0.820 0.358 1 1 1 1 0.095362365
TCGA-31-1951 TCGA-discovery Mesenchymal 58.0 unknown IIIC G3 Optimal LIVING 22.8 yes 21.93333333 NA "1,678.3" "1,999.3" "2,072.9" "1,866.0" 0.645 0.887 0.800 0.608 1 1 1 1 0.078481235
TCGA-25-1633 TCGA-discovery Mesenchymal 64.0 SENSITIVE IIIC G3 Optimal LIVING 60 yes 20.53333333 NA 645.7 "1,580.7" "2,879.3" "2,655.2" 0.378 0.717 0.916 0.857 0 1 1 1 0.252708204
TCGA-25-1635 TCGA-discovery Mesenchymal 71.0 SENSITIVE IIIC G3 Optimal DECEASED 51.9 yes 20.46666667 NA "1,203.4" "1,712.7" "2,167.9" "2,067.5" 0.476 0.747 0.805 0.654 1 1 1 1 0.122288905
TCGA-24-2254 TCGA-discovery Mesenchymal 66.0 unknown IIIC G3 Optimal DECEASED 57.9 yes 20.2 NA "1,929.1" 854.6 "1,957.8" "2,014.1" 0.804 0.563 0.707 0.612 1 0 1 1 0.033783293
TCGA-13-1499 TCGA-discovery Mesenchymal 56.0 SENSITIVE IIIC G3 unknown LIVING 38.9 yes 19.4 NA 353.0 "1,726.4" "2,684.9" "2,970.1" 0.305 0.834 0.927 0.911 0 1 1 1 0.194579401
TCGA-25-2398 TCGA-discovery Mesenchymal 71.0 SENSITIVE IIIC G3 Optimal DECEASED 45.6 yes 19.23333333 NA 973.9 986.4 "3,145.1" "2,956.3" 0.480 0.584 0.969 0.905 1 0 1 1 0.244879447
TCGA-24-2289 TCGA-discovery Mesenchymal 69.0 RESISTANT IV G3 Suboptimal LIVING 60 yes 18.93333333 NA 655.6 "1,638.2" "2,622.9" "1,622.4" 0.510 0.749 0.902 0.611 0 1 1 1 0.266828199
TCGA-13-0894 TCGA-discovery Mesenchymal 53.0 SENSITIVE IIIC G3 Optimal DECEASED 50.3 yes 18.83333333 NA "1,754.3" 798.3 "2,961.9" 816.4 0.658 0.502 0.899 0.429 1 0 1 1 0.317986434
TCGA-13-0908 TCGA-discovery Mesenchymal 58.0 SENSITIVE IV G3 Optimal LIVING 45.5 yes 18.4 NA "1,762.4" "1,853.3" "2,406.0" "1,051.9" 0.695 0.792 0.862 0.430 1 1 1 1 0.222322386
TCGA-29-1768 TCGA-discovery Mesenchymal 50.0 SENSITIVE IV G3 Suboptimal DECEASED 31.7 yes 18.23333333 NA 947.5 "2,112.6" "2,947.0" "1,195.9" 0.495 0.859 0.948 0.422 1 1 1 1 0.235132982
TCGA-24-2280 TCGA-discovery Mesenchymal 74.0 SENSITIVE IIIC G3 Optimal LIVING 60 yes 17.8 NA 505.1 -109.9 "3,045.8" "2,856.8" 0.419 0.354 0.945 0.825 0 0 1 1 0.188230462
TCGA-24-2298 TCGA-discovery Mesenchymal 56.0 RESISTANT IIIC G3 Suboptimal DECEASED 54.0 yes 15.63333333 NA "1,930.7" "1,027.1" "1,999.3" 988.1 0.756 0.530 0.782 0.373 1 0 1 1 0.119711592
TCGA-59-2354 TCGA-discovery Mesenchymal 64.0 unknown IIIC G3 Optimal DECEASED 34.9 yes 15.36666667 NA "1,502.1" "1,797.6" "2,366.0" "1,503.7" 0.666 0.846 0.881 0.478 1 1 1 1 0.202530612
TCGA-61-2095 TCGA-discovery Mesenchymal 54.0 unknown IIIC G2 Optimal LIVING 60 yes 14.83333333 NA "1,901.6" "1,222.2" "2,366.2" "1,469.0" 0.800 0.662 0.821 0.480 1 0 1 1 0.138874081
TCGA-36-1580 TCGA-discovery Mesenchymal 82.0 unknown IIIC G3 Suboptimal DECEASED 24.6 yes 14.66666667 NA 945.2 "1,510.9" "2,507.3" "1,781.8" 0.531 0.676 0.899 0.693 1 1 1 1 0.298300935
TCGA-61-1919 TCGA-discovery Mesenchymal 58.0 unknown IIIC G2 unknown DECEASED 38.7 yes 14.63333333 NA 412.0 "2,265.7" "2,366.5" "1,313.9" 0.135 0.852 0.852 0.492 0 1 1 1 0.153435976
TCGA-25-2404 TCGA-discovery Mesenchymal 38.0 SENSITIVE IIIC G3 Optimal DECEASED 29.4 yes 14.16666667 NA "1,612.6" "1,293.0" "2,020.3" 960.3 0.719 0.680 0.796 0.315 1 0 1 1 0.113021192
TCGA-25-1320 TCGA-discovery Mesenchymal 65.0 SENSITIVE IIIC G3 Optimal DECEASED 37.5 yes 14.1 NA 863.5 735.1 "2,548.5" "2,250.1" 0.452 0.522 0.923 0.799 0 0 1 1 0.269775804
TCGA-23-1117 TCGA-discovery Mesenchymal 43.0 RESISTANT IIIC G3 Optimal DECEASED 33.8 yes 13.93333333 NA "1,654.9" "1,278.7" "2,532.2" 549.6 0.597 0.579 0.854 0.302 1 0 1 1 0.239919159
TCGA-13-1487 TCGA-discovery Mesenchymal 74.0 SENSITIVE IV GX unknown DECEASED 22.7 yes 13.73333333 NA 806.0 -223.0 "2,127.3" "2,029.2" 0.418 0.095 0.799 0.666 0 0 1 1 0.054176213
TCGA-24-1563 TCGA-discovery Mesenchymal 66.0 SENSITIVE IIIC G3 Optimal DECEASED 48.4 yes 13.2 NA "1,547.2" "1,437.1" "2,560.1" 955.7 0.721 0.705 0.901 0.368 1 1 1 1 0.24554058
TCGA-04-1332 TCGA-discovery Mesenchymal 70.0 unknown IIIC G3 Optimal DECEASED 41.6 yes 13.16666667 NA 818.2 169.4 "2,403.2" "2,290.9" 0.471 0.311 0.871 0.764 0 0 1 1 0.071478917
TCGA-25-1326 TCGA-discovery Mesenchymal 61.0 SENSITIVE IIIC G3 Optimal DECEASED 31.5 yes 13.16666667 NA "1,184.6" "1,934.5" "2,259.5" 768.3 0.418 0.812 0.828 0.314 1 1 1 1 0.120700952
TCGA-13-1501 TCGA-discovery Mesenchymal 50.0 SENSITIVE IV G3 Suboptimal LIVING 33.3 yes 13.06666667 NA "1,066.4" 105.2 "1,778.0" "1,498.9" 0.539 0.154 0.692 0.461 1 0 1 1 0.079335685
TCGA-04-1338 TCGA-discovery Mesenchymal 78.0 RESISTANT IIIC G3 Optimal LIVING 47.3 yes 12.66666667 NA "1,039.1" "1,425.4" "2,608.2" "1,219.9" 0.559 0.709 0.902 0.429 1 1 1 1 0.242213516
TCGA-29-1770 TCGA-discovery Mesenchymal 54.0 SENSITIVE IIIC G2 Optimal LIVING 24.7 yes 12.56666667 NA "1,208.8" 703.4 "2,415.1" "1,316.1" 0.444 0.323 0.874 0.499 1 0 1 1 0.225579726
TCGA-13-0793 TCGA-discovery Mesenchymal 40.0 SENSITIVE IV G3 Optimal LIVING 29.1 yes 11.7 NA "1,451.8" "1,282.6" "2,021.6" "1,529.3" 0.522 0.577 0.760 0.434 1 0 1 1 0.110089723
TCGA-24-2033 TCGA-discovery Mesenchymal 87.0 unknown IIIC G3 Suboptimal DECEASED 18.7 yes 11.7 NA "1,019.1" 573.2 "1,934.6" "1,459.3" 0.427 0.404 0.757 0.552 1 0 1 1 0.044673704
TCGA-04-1530 TCGA-discovery Mesenchymal 68.0 SENSITIVE IIIC G3 Optimal LIVING 60 yes 11.66666667 NA 357.0 "1,559.3" "2,599.7" "2,417.2" 0.310 0.730 0.917 0.823 0 1 1 1 0.211260841
TCGA-25-1623 TCGA-discovery Mesenchymal 71.0 SENSITIVE IV G3 Optimal DECEASED 18.8 yes 11.4 NA 707.8 "2,474.1" "2,867.7" "1,932.6" 0.370 0.890 0.948 0.701 0 1 1 1 0.226225977
TCGA-24-1434 TCGA-discovery Mesenchymal 59.0 RESISTANT IIIC G3 Optimal DECEASED 18.9 yes 11.23333333 NA "1,452.4" "2,093.3" "3,060.7" "2,010.6" 0.652 0.817 0.972 0.715 1 1 1 1 0.314594075
TCGA-25-2408 TCGA-discovery Mesenchymal 37.0 unknown IV G2 Optimal DECEASED 31.4 yes 11.1 NA "1,351.8" 977.1 "2,622.4" "1,598.6" 0.613 0.572 0.902 0.578 1 0 1 1 0.270211531
TCGA-25-1626 TCGA-discovery Mesenchymal 65.0 RESISTANT IIIC G3 Suboptimal DECEASED 16.0 yes 10.6 NA 966.9 "1,845.6" "3,464.6" "2,406.1" 0.423 0.781 1.000 0.771 1 1 1 1 0.370016743
TCGA-13-1483 TCGA-discovery Mesenchymal 61.0 RESISTANT IIIC G3 Suboptimal DECEASED 29.8 yes 9.866666667 NA "1,290.6" "1,054.0" "1,915.1" 787.1 0.604 0.540 0.746 0.293 1 0 1 1 0.123564832
TCGA-61-2113 TCGA-discovery Mesenchymal 54.0 RESISTANT IIC G3 unknown DECEASED 22.5 yes 9.7 NA "1,035.3" "1,955.3" "2,325.4" "1,714.7" 0.492 0.868 0.837 0.626 1 1 1 1 0.109444259
TCGA-24-2035 TCGA-discovery Mesenchymal 65.0 unknown IIIC G3 Optimal DECEASED 28.6 yes 9.566666667 NA "1,348.2" "1,760.6" "2,413.6" "1,000.8" 0.573 0.819 0.863 0.444 1 1 1 1 0.234508999
TCGA-25-1628 TCGA-discovery Mesenchymal 67.0 RESISTANT IIIC G3 Optimal DECEASED 20.9 yes 9.533333333 NA 356.3 "1,788.8" "2,886.4" "2,892.9" 0.220 0.799 0.952 0.906 0 1 1 1 0.278214007
TCGA-29-1705 TCGA-discovery Mesenchymal 47.0 unknown IIIC G2 Suboptimal DECEASED 18.5 yes 9.433333333 NA "1,766.4" "1,028.2" "2,307.9" "1,741.7" 0.712 0.478 0.863 0.555 1 0 1 1 0.233881916
TCGA-24-0970 TCGA-discovery Mesenchymal 63.0 RESISTANT IIIC G3 Suboptimal DECEASED 11.8 yes 9.333333333 NA 775.3 -156.3 "2,447.3" "1,953.4" 0.470 0.328 0.874 0.716 0 0 1 1 0.131135657
TCGA-13-0911 TCGA-discovery Mesenchymal 55.0 RESISTANT IV G3 Optimal LIVING 28.1 yes 9.266666667 NA "1,235.2" "2,464.1" "2,423.6" "1,787.6" 0.663 0.781 0.827 0.545 1 1 1 1 0.076653103
TCGA-30-1892 TCGA-discovery Mesenchymal 52.0 RESISTANT IIIC G3 Optimal DECEASED 49.5 yes 8.433333333 NA "1,479.3" 759.4 "2,818.0" "1,264.0" 0.506 0.454 0.895 0.510 1 0 1 1 0.306267359
TCGA-25-1328 TCGA-discovery Mesenchymal 38.0 RESISTANT IIIC G3 Optimal LIVING 60 yes 8.133333333 NA "2,370.3" 848.0 "2,135.3" 805.5 0.807 0.502 0.806 0.486 1 0 1 1 0.188793414
TCGA-25-2399 TCGA-discovery Mesenchymal 80.0 SENSITIVE IIIC G3 Suboptimal DECEASED 20.3 yes 8.1 NA "1,295.7" "1,574.8" "1,851.8" "1,731.7" 0.629 0.779 0.681 0.633 1 1 1 1 0.047113852
TCGA-24-1564 TCGA-discovery Mesenchymal 67.0 RESISTANT IIIC G3 Optimal DECEASED 26.2 yes 7.366666667 NA "1,124.9" "2,573.3" "2,203.9" "1,744.3" 0.595 0.835 0.833 0.610 1 1 1 1 0.104971633
TCGA-30-1891 TCGA-discovery Mesenchymal 61.0 RESISTANT IIIC G2 Optimal DECEASED 30.5 yes 6.033333333 NA "1,237.2" "1,469.6" "2,479.2" "1,338.4" 0.554 0.649 0.867 0.394 1 1 1 1 0.253781474
TCGA-29-1698 TCGA-discovery Mesenchymal 53.0 RESISTANT IIIC G3 Optimal LIVING 60 yes 6 NA 626.7 910.4 "2,117.8" "2,070.7" 0.249 0.424 0.816 0.741 0 0 1 1 0.134441342
TCGA-61-1733 TCGA-discovery Mesenchymal 71.0 RESISTANT IIIC G3 Optimal LIVING 32.2 yes 5.8 NA 846.3 818.2 "2,242.1" "2,683.8" 0.435 0.469 0.786 0.845 0 0 1 1 0.076747928
TCGA-13-1485 TCGA-discovery Mesenchymal 48.0 RESISTANT IV G2 Optimal DECEASED 21.0 yes 5.666666667 NA "2,139.6" -30.5 "2,949.4" "1,191.7" 0.907 0.264 0.939 0.535 1 0 1 1 0.267287553
TCGA-13-0714 TCGA-discovery Mesenchymal 55.0 unknown IV G3 Optimal DECEASED 6.3 yes 3.666666667 NA "1,737.3" 735.7 "2,091.8" "1,077.2" 0.670 0.370 0.702 0.399 1 0 1 1 0.150522094
TCGA-61-2009 TCGA-discovery Mesenchymal 65.0 RESISTANT IIIC G3 Suboptimal LIVING 40.4 yes 3.366666667 NA "1,340.2" "1,547.4" "2,263.5" "2,145.6" 0.591 0.713 0.773 0.690 1 1 1 1 0.181695881
TCGA-24-1928 TCGA-discovery Mesenchymal 77.0 SENSITIVE IIIC G3 Suboptimal DECEASED 11.2 yes 2.333333333 NA "1,485.4" "1,083.5" "2,195.4" "1,934.6" 0.606 0.597 0.826 0.569 1 0 1 1 0.1828624
TCGA-04-1519 TCGA-discovery Proliferative 48.0 unknown IIIC G3 unknown unknown unknown unknown unknown NA "1,143.3" -327.8 418.6 "2,578.4" 0.555 0.128 0.331 0.750 1 0 0 1 0.088400805
TCGA-04-1341 TCGA-discovery Proliferative 85.0 unknown unknown G3 [Pending] LIVING unknown unknown unknown NA 751.4 -291.0 "1,180.6" "2,374.4" 0.377 0.189 0.450 0.772 0 0 0 1 0.131211237
TCGA-13-1492 TCGA-discovery Proliferative 66.0 SENSITIVE IIIC G3 unknown LIVING 60 unknown unknown NA 936.4 483.8 880.7 "2,888.1" 0.410 0.416 0.426 0.780 1 0 0 1 0.173559065
TCGA-09-2050 TCGA-discovery Proliferative 65.0 SENSITIVE IIA G2 Optimal LIVING 60 unknown unknown NA 6.0 486.0 "1,422.7" "2,982.7" 0.226 0.364 0.508 0.859 0 0 0 1 0.216022312
TCGA-13-0888 TCGA-discovery Proliferative 78.0 SENSITIVE IIIC G3 Optimal LIVING 60 unknown unknown NA 344.2 "-1,822.6" "1,800.7" "3,400.5" 0.268 0.044 0.629 0.924 0 0 1 1 0.269676046
TCGA-61-2098 TCGA-discovery Proliferative 62.0 SENSITIVE IIIC G2 Suboptimal LIVING 60 unknown unknown NA 188.5 "-1,047.2" "1,822.9" "3,405.3" 0.285 0.177 0.645 0.931 0 0 1 1 0.252156995
TCGA-04-1347 TCGA-discovery Proliferative 81.0 unknown IV G3 Optimal LIVING 60 unknown unknown NA -406.0 "-1,546.7" "1,408.7" "3,346.4" 0.094 0.049 0.530 0.973 0 0 0 1 0.270841075
TCGA-30-1859 TCGA-discovery Proliferative 56.0 SENSITIVE unknown G3 Optimal DECEASED 48.7 unknown unknown NA "1,508.7" 678.5 "1,164.1" "2,265.9" 0.588 0.342 0.384 0.643 1 0 0 1 0.090977004
TCGA-13-0906 TCGA-discovery Proliferative 50.0 SENSITIVE IIIC G3 Optimal LIVING 45.6 unknown unknown NA 812.9 540.1 "1,286.3" "2,628.7" 0.374 0.343 0.439 0.810 0 0 0 1 0.152505411
TCGA-61-1917 TCGA-discovery Proliferative 60.0 unknown IIIB G3 unknown DECEASED 44.0 unknown unknown NA 607.4 "1,878.9" "1,413.2" "2,325.9" 0.289 0.801 0.502 0.716 0 1 0 1 -0.020012589
TCGA-09-2053 TCGA-discovery Proliferative 72.0 SENSITIVE IIIC G3 Optimal LIVING 40.3 unknown unknown NA "1,260.4" "1,451.0" "1,564.2" "2,332.7" 0.600 0.640 0.566 0.723 1 1 1 1 0.092374347
TCGA-09-1661 TCGA-discovery Proliferative 75.0 unknown IIIC G3 Optimal DECEASED 39.0 unknown unknown NA 630.0 -438.7 "1,952.4" "2,435.4" 0.417 0.122 0.664 0.714 0 0 1 1 0.070048981
TCGA-13-0910 TCGA-discovery Proliferative 58.0 SENSITIVE IIIC G3 Optimal LIVING 37.6 unknown unknown NA "1,077.9" 473.4 "1,468.4" "2,316.3" 0.572 0.295 0.502 0.694 1 0 1 1 0.070324885
TCGA-10-0935 TCGA-discovery Proliferative 68.0 unknown IIIC G3 Optimal DECEASED 35.9 unknown unknown NA 404.4 "-1,116.4" 938.7 "2,418.3" 0.403 0.101 0.444 0.705 0 0 0 1 0.187663571
TCGA-25-1324 TCGA-discovery Proliferative 74.0 unknown IIIC G3 Optimal DECEASED 34.5 unknown unknown NA -237.7 -131.4 464.1 "3,240.1" 0.207 0.212 0.341 0.930 0 0 0 1 0.284297257
TCGA-13-0762 TCGA-discovery Proliferative 65.0 SENSITIVE IIIC G3 Optimal LIVING 32.7 unknown unknown NA "1,570.5" -377.5 837.7 "2,506.8" 0.522 0.256 0.351 0.717 1 0 0 1 0.091587743
TCGA-25-1325 TCGA-discovery Proliferative 77.0 unknown IV G3 Suboptimal DECEASED 32.5 unknown unknown NA 718.1 727.9 474.1 "1,915.6" 0.262 0.394 0.159 0.638 0 0 0 1 0.004038444
TCGA-23-1113 TCGA-discovery Proliferative 48.0 unknown IV G3 Optimal DECEASED 31.6 unknown unknown NA "1,435.0" -350.6 "1,253.0" "1,824.0" 0.554 0.200 0.479 0.552 1 0 0 1 0.086739871
TCGA-09-1669 TCGA-discovery Proliferative 54.0 SENSITIVE IIIA G3 Optimal LIVING 30.9 unknown unknown NA 573.1 "1,132.4" "1,609.5" "2,177.0" 0.278 0.571 0.552 0.676 0 0 1 1 0.140591401
TCGA-36-1577 TCGA-discovery Proliferative 43.0 unknown IIC G2 Optimal LIVING 26.1 unknown unknown NA -208.9 -815.1 "1,661.3" "3,330.2" 0.102 0.155 0.605 0.897 0 0 1 1 0.212383132
TCGA-57-1582 TCGA-discovery Proliferative 50.0 SENSITIVE IIIC G3 Optimal DECEASED 24.4 unknown unknown NA 536.0 11.7 "1,118.4" "1,286.7" 0.315 0.361 0.363 0.524 0 0 0 1 -0.009166542
TCGA-13-0916 TCGA-discovery Proliferative 49.0 SENSITIVE IIIC G3 Optimal LIVING 21.4 unknown unknown NA 163.5 "1,378.1" "1,045.3" "1,752.1" 0.308 0.597 0.424 0.633 0 0 0 1 0.020470745
TCGA-09-2054 TCGA-discovery Proliferative 58.0 unknown IIIC G3 Optimal DECEASED 21.2 unknown unknown NA -700.7 18.2 "2,235.2" "3,542.9" 0.032 0.270 0.695 0.921 0 0 1 1 0.123238404
TCGA-20-1684 TCGA-discovery Proliferative 51.0 SENSITIVE IIIC G3 Optimal LIVING 19.3 unknown unknown NA 981.8 -73.0 570.3 "2,217.4" 0.275 0.284 0.327 0.773 1 0 0 1 0.163022229
TCGA-23-1031 TCGA-discovery Proliferative 60.0 unknown IV G3 Optimal DECEASED 19.1 unknown unknown NA 741.0 -672.9 972.3 "1,633.0" 0.415 0.105 0.383 0.610 0 0 0 1 0.141213396
TCGA-10-0928 TCGA-discovery Proliferative 71.0 unknown IIIC G3 Optimal DECEASED 18.7 unknown unknown NA 898.5 -205.4 886.6 "2,264.9" 0.420 0.100 0.381 0.792 1 0 0 1 0.13819791
TCGA-13-0730 TCGA-discovery Proliferative 71.0 unknown IIIC G3 Suboptimal DECEASED 18.0 unknown unknown NA -203.2 168.3 "1,866.2" "3,873.5" 0.125 0.200 0.655 0.983 0 0 1 1 0.088919451
TCGA-23-1024 TCGA-discovery Proliferative 52.0 unknown IV G3 Optimal LIVING 15.6 unknown unknown NA 780.8 317.8 8.6 891.5 0.380 0.300 0.156 0.448 0 0 0 1 0.097480717
TCGA-57-1583 TCGA-discovery Proliferative 57.0 unknown IIIC G3 Optimal DECEASED 11.5 unknown unknown NA "1,149.0" 597.1 "1,060.6" "1,191.7" 0.401 0.354 0.473 0.520 1 0 0 1 0.08716659
TCGA-24-1920 TCGA-discovery Proliferative 74.0 unknown IIIC G3 Optimal LIVING 9.9 unknown unknown NA "1,066.2" "1,359.3" "1,297.1" "2,673.3" 0.459 0.628 0.503 0.754 1 0 0 1 -0.020634198
TCGA-59-2352 TCGA-discovery Proliferative 78.0 unknown IIIC G3 unknown DECEASED 9.5 unknown unknown NA 514.0 "1,294.8" "1,624.5" "2,811.8" 0.347 0.653 0.571 0.853 0 0 1 1 0.109177591
TCGA-24-1469 TCGA-discovery Proliferative 71.0 unknown IIIC G3 Optimal LIVING 9.2 unknown unknown NA 236.3 "1,133.7" 987.2 "2,843.1" 0.212 0.537 0.439 0.868 0 0 0 1 0.102833364
TCGA-09-1674 TCGA-discovery Proliferative 79.0 unknown IIIC G3 Optimal LIVING 8.7 unknown unknown NA -848.9 "-1,325.3" "1,318.5" "3,879.7" 0.018 0.176 0.566 1.000 0 0 0 1 0.323257764
TCGA-36-1575 TCGA-discovery Proliferative 83.0 unknown IIIB G3 Optimal LIVING 8.7 unknown unknown NA 375.1 -912.7 931.2 "3,032.3" 0.334 0.155 0.465 0.844 0 0 0 1 0.241230228
TCGA-13-0802 TCGA-discovery Proliferative 79.0 unknown IIIC G3 Optimal LIVING 8.3 unknown unknown NA 42.4 -638.7 999.0 "3,550.9" 0.102 0.149 0.445 0.956 0 0 0 1 0.312447483
TCGA-13-0800 TCGA-discovery Proliferative 52.0 unknown IIIC G3 Optimal LIVING 8.2 unknown unknown NA 559.5 "-1,267.3" 796.8 "3,575.9" 0.257 0.183 0.441 0.958 0 0 0 1 0.264832311
TCGA-24-1419 TCGA-discovery Proliferative 62.0 SENSITIVE IIIC G3 Suboptimal LIVING 8.0 unknown unknown NA 285.1 -104.7 347.5 "1,702.8" 0.381 0.268 0.408 0.640 0 0 0 1 0.125003279
TCGA-13-0799 TCGA-discovery Proliferative 44.0 SENSITIVE IIIC G3 Optimal LIVING 7.9 unknown unknown NA 935.9 169.0 -73.1 "2,415.2" 0.397 0.302 0.147 0.716 1 0 0 1 0.099438568
TCGA-13-1409 TCGA-discovery Proliferative 73.0 unknown IIIC G3 Optimal LIVING 6.9 unknown unknown NA "1,036.0" "-1,678.0" 876.5 "2,230.6" 0.542 0.145 0.391 0.637 1 0 0 1 0.158412464
TCGA-13-1404 TCGA-discovery Proliferative 48.0 unknown IIIC G3 Optimal LIVING 6.7 unknown unknown NA 887.2 819.4 "1,639.4" "1,415.9" 0.423 0.476 0.642 0.562 1 0 1 1 -0.084231113
TCGA-23-1121 TCGA-discovery Proliferative 52.0 unknown IIIC G3 Suboptimal LIVING 6.5 unknown unknown NA -629.9 "-1,011.9" "1,115.7" "3,150.9" 0.072 0.285 0.416 0.862 0 0 0 1 0.226475663
TCGA-13-1407 TCGA-discovery Proliferative 51.0 unknown IIIC G3 unknown LIVING 6.1 unknown unknown NA -315.7 "-1,279.1" 627.3 "3,183.3" 0.126 0.102 0.358 0.903 0 0 0 1 0.315139477
TCGA-24-1424 TCGA-discovery Proliferative 67.0 unknown IIIC G3 Optimal LIVING 6.1 unknown unknown NA 629.0 901.9 "1,935.1" "3,042.6" 0.314 0.597 0.718 0.941 0 0 1 1 0.083759174
TCGA-61-1900 TCGA-discovery Proliferative 51.0 unknown IIIB G3 Optimal LIVING 5.9 unknown unknown NA 703.1 -568.8 "1,528.7" "3,203.4" 0.326 0.134 0.608 0.878 0 0 1 1 0.246322607
TCGA-24-1850 TCGA-discovery Proliferative 72.0 unknown IIIC G3 Optimal LIVING 5.6 unknown unknown NA 624.7 "1,137.6" "2,050.4" "3,238.9" 0.240 0.662 0.742 0.923 0 0 1 1 -0.090642475
TCGA-59-2363 TCGA-discovery Proliferative 40.0 unknown IIIA G3 Optimal LIVING 5.5 unknown unknown NA 249.8 -102.4 "1,616.2" "2,784.4" 0.298 0.190 0.551 0.834 0 0 1 1 0.191471395
TCGA-24-1426 TCGA-discovery Proliferative 43.0 unknown IIIC G3 Optimal LIVING 5.4 unknown unknown NA 897.5 6.6 "1,116.5" "2,428.5" 0.451 0.159 0.444 0.789 1 0 0 1 0.157780086
TCGA-24-2019 TCGA-discovery Proliferative 46.0 unknown IIIC G3 Optimal LIVING 4.9 unknown unknown NA "1,088.5" "1,093.5" "1,151.0" "2,562.0" 0.501 0.566 0.442 0.793 1 0 0 1 0.062179453
TCGA-61-2088 TCGA-discovery Proliferative 51.0 unknown IIIC G3 Optimal LIVING 4.8 unknown unknown NA "1,275.1" -310.0 619.9 "2,734.7" 0.532 0.257 0.396 0.775 1 0 0 1 0.158483961
TCGA-09-2048 TCGA-discovery Proliferative 63.0 unknown IIIC G3 Optimal DECEASED 4.6 unknown unknown NA -793.3 "-1,057.7" "1,468.1" "3,392.2" 0.066 0.123 0.499 0.939 0 0 1 1 0.263378646
TCGA-13-1506 TCGA-discovery Proliferative 45.0 unknown IIIC G3 unknown LIVING 4.5 unknown unknown NA 603.4 "1,040.8" 193.1 "1,611.3" 0.362 0.499 0.215 0.572 0 0 0 1 -0.003567583
TCGA-09-1673 TCGA-discovery Proliferative 50.0 unknown IV G3 Suboptimal LIVING 3.1 unknown unknown NA 204.2 554.1 "1,226.9" "2,482.8" 0.226 0.358 0.436 0.761 0 0 0 1 0.149494329
TCGA-23-1032 TCGA-discovery Proliferative 73.0 unknown IV G3 Optimal DECEASED 2.3 unknown unknown NA 679.4 142.9 119.4 "2,347.5" 0.370 0.381 0.302 0.765 0 0 0 1 0.132081566
TCGA-25-1317 TCGA-discovery Proliferative 66.0 unknown IIIC G3 unknown DECEASED 1.0 unknown unknown NA "1,416.7" -310.9 "1,578.0" "2,099.5" 0.609 0.042 0.609 0.664 1 0 1 1 0.06067794
TCGA-25-1312 TCGA-discovery Proliferative 69.0 unknown IV G3 Optimal DECEASED 1.0 unknown unknown NA "1,498.4" 976.2 859.9 "1,791.5" 0.576 0.436 0.360 0.718 1 0 0 1 0.106619204
TCGA-23-1809 TCGA-discovery Proliferative 63.0 unknown IIC G3 Optimal LIVING 0.5 unknown unknown NA 348.5 376.2 "1,297.5" "2,672.4" 0.233 0.314 0.504 0.777 0 0 0 1 0.181259204
TCGA-25-1627 TCGA-discovery Proliferative 73.0 unknown IIIC G3 Optimal DECEASED 0.4 unknown unknown NA 902.9 490.0 921.6 "1,872.1" 0.306 0.278 0.364 0.619 1 0 0 1 0.073023242
TCGA-23-1107 TCGA-discovery Proliferative 59.0 unknown IV G3 Suboptimal DECEASED 0.3 unknown unknown NA 979.7 897.8 315.9 "2,000.3" 0.459 0.419 0.312 0.681 1 0 0 1 0.04477373
TCGA-23-1119 TCGA-discovery Proliferative 64.0 SENSITIVE IIIC G3 Optimal LIVING 60 no 60 NA "1,119.7" "1,004.0" "1,495.4" "1,688.0" 0.530 0.606 0.562 0.547 1 0 1 1 -0.002475929
TCGA-61-2111 TCGA-discovery Proliferative 61.0 SENSITIVE IV G3 unknown LIVING 60 no 60 NA "1,272.3" 849.4 "1,087.4" "2,430.5" 0.500 0.510 0.423 0.755 1 0 0 1 0.037641705
TCGA-29-2425 TCGA-discovery Proliferative 60.0 unknown IIIC G2 Suboptimal LIVING 60 yes 52.56666667 NA "1,029.8" 434.2 "1,079.2" "2,089.7" 0.510 0.360 0.412 0.758 1 0 0 1 0.11436438
TCGA-29-1762 TCGA-discovery Proliferative 59.0 SENSITIVE IV G2 Suboptimal LIVING 60 yes 45.8 NA 409.6 511.4 "1,289.3" "3,317.2" 0.155 0.388 0.477 0.912 0 0 0 1 0.246852346
TCGA-04-1514 TCGA-discovery Proliferative 45.0 SENSITIVE IIIA G2 Optimal DECEASED 57.3 yes 40.7 NA -451.1 "-1,336.0" "1,642.5" "3,330.4" 0.145 0.085 0.636 0.927 0 0 1 1 0.305887529
TCGA-04-1542 TCGA-discovery Proliferative 52.0 SENSITIVE IIIB G2 Optimal LIVING 60 yes 34.5 NA 980.7 "-1,354.0" 408.8 "1,468.8" 0.471 0.037 0.215 0.511 1 0 0 1 0.099240804
TCGA-10-0927 TCGA-discovery Proliferative 65.0 SENSITIVE IIIC G2 Optimal LIVING 60 yes 33.36666667 NA 619.9 "-1,129.3" "1,575.3" "2,761.3" 0.367 0.104 0.603 0.796 0 0 1 1 0.209564844
TCGA-24-1603 TCGA-discovery Proliferative 53.0 unknown IIIB G3 unknown LIVING 60 yes 33.06666667 NA "1,165.9" 956.3 627.8 "1,990.7" 0.529 0.501 0.331 0.686 1 0 0 1 -0.015547804
TCGA-23-1109 TCGA-discovery Proliferative 63.0 unknown IIIC G3 Optimal DECEASED 52.1 yes 32.9 NA 593.4 909.5 "1,752.5" "2,166.2" 0.327 0.453 0.640 0.784 0 0 1 1 -0.030612448
TCGA-09-2049 TCGA-discovery Proliferative 64.0 unknown IIIC G3 Suboptimal LIVING 60 yes 31.73333333 NA 192.8 "-1,780.4" "1,469.3" "3,291.1" 0.269 0.066 0.525 0.822 0 0 1 1 0.268387533
TCGA-24-2036 TCGA-discovery Proliferative 50.0 unknown IIIA G3 Optimal LIVING 60 yes 30.46666667 NA "1,696.0" -61.0 793.7 "2,209.1" 0.704 0.161 0.434 0.751 1 0 0 1 0.097186728
TCGA-13-0913 TCGA-discovery Proliferative 53.0 SENSITIVE IIIC G3 Optimal LIVING 30.4 yes 29.03333333 NA 412.8 -582.3 395.0 "2,112.6" 0.354 0.050 0.281 0.674 0 0 0 1 0.167469682
TCGA-20-0990 TCGA-discovery Proliferative 74.0 SENSITIVE IIIC G3 unknown LIVING 26.3 yes 29 NA 307.9 -417.9 829.0 "2,279.2" 0.270 0.139 0.380 0.800 0 0 0 1 0.200637228
TCGA-13-0794 TCGA-discovery Proliferative 60.0 SENSITIVE IIIC G3 Optimal LIVING 30.8 yes 28.16666667 NA 377.8 -705.3 206.0 "2,448.1" 0.239 0.156 0.235 0.756 0 0 0 1 0.222621606
TCGA-04-1655 TCGA-discovery Proliferative 49.0 SENSITIVE IIIB G2 Optimal DECEASED 46.0 yes 27.3 NA "1,964.4" -678.5 "1,810.3" "2,514.0" 0.564 0.043 0.644 0.830 1 0 1 1 0.161040065
TCGA-13-1497 TCGA-discovery Proliferative 48.0 SENSITIVE IIIC G3 unknown LIVING 55.1 yes 27.1 NA 713.5 "1,369.5" "1,185.0" "1,579.1" 0.416 0.563 0.441 0.542 0 0 0 1 -0.038800162
TCGA-61-1743 TCGA-discovery Proliferative 53.0 SENSITIVE IIC G2 Optimal DECEASED 44.3 yes 26.96666667 NA 942.8 513.8 913.1 "2,039.8" 0.482 0.403 0.423 0.688 1 0 0 1 0.071005406
TCGA-13-1489 TCGA-discovery Proliferative 70.0 SENSITIVE IIIC G2 unknown LIVING 60 yes 26.86666667 NA 940.0 -78.5 45.1 506.8 0.490 0.183 0.263 0.382 1 0 0 0 0.067373868
TCGA-25-1319 TCGA-discovery Proliferative 73.0 unknown IIIC G3 Suboptimal LIVING 60 yes 24.33333333 NA 799.2 "1,327.4" 426.8 "1,479.2" 0.332 0.673 0.334 0.660 0 0 0 1 -0.009311695
TCGA-24-2020 TCGA-discovery Proliferative 67.0 unknown IIIC G3 Optimal LIVING 60 yes 24.1 NA 197.6 -763.2 "1,173.0" "3,105.3" 0.414 0.224 0.470 0.809 0 0 0 1 0.175743514
TCGA-24-2260 TCGA-discovery Proliferative 74.0 SENSITIVE IIIB G3 Optimal DECEASED 36.7 yes 22.23333333 NA 44.6 -276.1 "1,505.7" "2,311.0" 0.312 0.208 0.531 0.724 0 0 1 1 0.068911206
TCGA-24-2030 TCGA-discovery Proliferative 87.0 unknown IIIC G3 Suboptimal DECEASED 54.7 yes 21.53333333 NA "1,162.4" -54.4 "1,150.3" "2,766.4" 0.523 0.321 0.468 0.855 1 0 0 1 0.112417086
TCGA-24-1614 TCGA-discovery Proliferative 57.0 SENSITIVE IIIC G3 Optimal DECEASED 49.0 yes 21.46666667 NA "1,037.2" -88.1 "1,014.8" "1,714.1" 0.512 0.321 0.402 0.623 1 0 0 1 0.089548841
TCGA-24-1544 TCGA-discovery Proliferative 71.0 SENSITIVE IIIC G3 Optimal DECEASED 27.3 yes 21.43333333 NA 172.0 -576.2 668.1 "2,939.6" 0.231 0.173 0.406 0.872 0 0 0 1 0.237799517
TCGA-23-1114 TCGA-discovery Proliferative 55.0 SENSITIVE IIIC G3 Optimal LIVING 60 yes 21.13333333 NA 424.4 -782.7 "1,955.5" "3,069.4" 0.154 0.073 0.678 0.898 0 0 1 1 0.179161345
TCGA-30-1853 TCGA-discovery Proliferative 58.0 SENSITIVE IIIC G3 Optimal DECEASED 36.8 yes 21.13333333 NA "1,269.3" "-1,580.1" "1,011.3" "1,761.5" 0.519 0.079 0.450 0.602 1 0 0 1 0.13025028
TCGA-13-0766 TCGA-discovery Proliferative 42.0 SENSITIVE IIIC G3 Optimal LIVING 21.7 yes 20.93333333 NA 813.1 "1,002.9" "1,240.1" "2,351.8" 0.348 0.496 0.452 0.804 0 0 0 1 0.090548268
TCGA-20-1683 TCGA-discovery Proliferative 65.0 SENSITIVE IIIC G3 Optimal LIVING 25.7 yes 20.6 NA 539.8 679.4 "1,511.3" "1,544.3" 0.374 0.339 0.514 0.639 0 0 1 1 0.049272031
TCGA-24-2027 TCGA-discovery Proliferative 51.0 unknown IV G3 Suboptimal LIVING 60 yes 20.56666667 NA 690.0 -122.4 "1,496.2" "2,642.9" 0.383 0.220 0.527 0.817 0 0 1 1 0.216747541
TCGA-29-1691 TCGA-discovery Proliferative 51.0 SENSITIVE IIIC G2 Optimal DECEASED 47.8 yes 20.43333333 NA 344.4 "1,412.3" "1,290.1" "2,741.4" 0.298 0.615 0.496 0.857 0 0 0 1 0.040805161
TCGA-25-2400 TCGA-discovery Proliferative 76.0 unknown IIIC G3 Optimal DECEASED 42.6 yes 19.23333333 NA "1,534.9" 755.6 502.7 "2,519.3" 0.499 0.434 0.290 0.767 1 0 0 1 0.063468492
TCGA-29-2414 TCGA-discovery Proliferative 75.0 unknown IIIC G2 Suboptimal LIVING 60 yes 18.36666667 NA 308.7 -562.7 "2,104.9" "2,822.0" 0.290 0.086 0.735 0.830 0 0 1 1 0.012410652
TCGA-25-1877 TCGA-discovery Proliferative 81.0 unknown IIIC G3 Optimal DECEASED 18.3 yes 18.3 NA -850.8 "1,092.0" "1,780.5" "3,430.6" 0.029 0.486 0.590 0.875 0 0 1 1 0.10896281
TCGA-13-0899 TCGA-discovery Proliferative 60.0 SENSITIVE IIIC G3 Optimal LIVING 56.9 yes 18.23333333 NA 859.9 541.3 "1,471.9" "2,027.6" 0.364 0.260 0.549 0.765 0 0 1 1 0.063660289
TCGA-25-1632 TCGA-discovery Proliferative 68.0 SENSITIVE IV G3 Optimal DECEASED 57.7 yes 17.9 NA "1,367.2" "-1,368.7" 810.6 "2,200.5" 0.523 0.000 0.335 0.693 1 0 0 1 0.123229173
TCGA-13-1491 TCGA-discovery Proliferative 55.0 SENSITIVE IIIC G3 unknown DECEASED 53.2 yes 16.93333333 NA "1,220.5" 365.5 983.8 "2,492.1" 0.631 0.333 0.455 0.815 1 0 0 1 0.060575113
TCGA-04-1646 TCGA-discovery Proliferative 60.0 SENSITIVE IIIC G3 Optimal DECEASED 28.3 yes 16.93333333 NA "1,335.6" 48.5 723.4 "2,959.0" 0.597 0.237 0.374 0.778 1 0 0 1 0.124660932
TCGA-29-1697 TCGA-discovery Proliferative 62.0 SENSITIVE IIIC G3 Suboptimal DECEASED 31.6 yes 16.63333333 NA 566.6 690.6 456.3 "2,831.4" 0.344 0.388 0.391 0.898 0 0 0 1 0.166590022
TCGA-61-1741 TCGA-discovery Proliferative 76.0 SENSITIVE IIIB G3 Suboptimal DECEASED 34.1 yes 16.23333333 NA 169.0 "1,276.3" "1,159.4" "3,163.0" 0.112 0.630 0.503 0.944 0 0 0 1 0.151867487
TCGA-04-1331 TCGA-discovery Proliferative 79.0 SENSITIVE IIIC G3 Optimal DECEASED 40.8 yes 15.3 NA "1,022.5" -329.0 "1,768.6" "2,710.2" 0.423 0.192 0.666 0.787 1 0 1 1 0.126976553
TCGA-23-1022 TCGA-discovery Proliferative 67.0 SENSITIVE IIIC G3 Optimal DECEASED 43.1 yes 15 NA "1,173.7" "-1,001.1" 252.8 "1,583.1" 0.421 0.152 0.303 0.627 1 0 0 1 0.157401581
TCGA-24-1430 TCGA-discovery Proliferative 68.0 SENSITIVE IIIC G3 Suboptimal DECEASED 28.7 yes 14.93333333 NA "1,138.2" -913.8 "1,155.1" "2,486.8" 0.555 0.048 0.402 0.754 1 0 0 1 0.187421354
TCGA-23-1122 TCGA-discovery Proliferative 53.0 SENSITIVE IIIC G3 Optimal DECEASED 39.6 yes 14.9 NA 868.2 "1,002.4" "1,433.5" "2,334.1" 0.472 0.470 0.500 0.821 0 0 0 1 0.106541034
TCGA-29-1763 TCGA-discovery Proliferative 43.0 SENSITIVE IIC G2 Optimal LIVING 60 yes 14.26666667 NA "1,220.8" "1,324.9" "1,698.8" "2,550.0" 0.496 0.531 0.587 0.758 1 0 1 1 0.099822811
TCGA-09-0364 TCGA-discovery Proliferative 80.0 unknown IIC G3 Suboptimal DECEASED 29.6 yes 13.16666667 NA -155.0 "-1,416.3" "1,229.6" "3,589.6" 0.164 0.083 0.513 0.929 0 0 0 1 0.286768465
TCGA-13-0901 TCGA-discovery Proliferative 42.0 SENSITIVE IIIC G3 Suboptimal LIVING 19.6 yes 13 NA 946.1 378.1 "2,072.1" "2,334.8" 0.433 0.361 0.716 0.731 1 0 1 1 -0.010790967
TCGA-25-1634 TCGA-discovery Proliferative 76.0 RESISTANT IIIC G3 Optimal DECEASED 36.0 yes 12.66666667 NA 392.0 "-1,859.2" "1,239.8" "3,226.6" 0.217 0.077 0.466 0.873 0 0 0 1 0.258926251
TCGA-36-1571 TCGA-discovery Proliferative 53.0 SENSITIVE IIIB G3 Optimal DECEASED 23.2 yes 12.46666667 NA "1,058.1" 50.6 498.6 "2,059.6" 0.461 0.161 0.283 0.713 1 0 0 1 0.161924203
TCGA-25-1323 TCGA-discovery Proliferative 72.0 SENSITIVE IIIC G3 Optimal DECEASED 12.2 yes 12.16666667 NA 628.9 -13.0 "1,880.5" "2,960.4" 0.433 0.162 0.685 0.930 0 0 1 1 0.137997244
TCGA-10-0938 TCGA-discovery Proliferative 80.0 unknown IIIC G3 Suboptimal DECEASED 20.1 yes 12.06666667 NA 360.0 -625.8 81.3 "1,681.4" 0.427 0.161 0.268 0.597 0 0 0 1 0.157003937
TCGA-10-0933 TCGA-discovery Proliferative 77.0 SENSITIVE IIIC G3 Optimal DECEASED 11.9 yes 11.86666667 NA 294.4 -336.1 "1,852.6" "3,149.8" 0.249 0.215 0.649 0.857 0 0 1 1 0.203022469
TCGA-29-1775 TCGA-discovery Proliferative 51.0 RESISTANT IIIC G2 Optimal LIVING 12.5 yes 11.36666667 NA 601.7 "1,046.7" 514.6 "2,613.2" 0.273 0.495 0.293 0.681 0 0 0 1 0.096500435
TCGA-24-1567 TCGA-discovery Proliferative 54.0 RESISTANT IIIB G3 Optimal DECEASED 17.5 yes 11.16666667 NA 265.8 "-1,291.7" 932.8 "3,234.9" 0.276 0.159 0.436 0.816 0 0 0 1 0.2217031
TCGA-23-1110 TCGA-discovery Proliferative 42.0 SENSITIVE IIIC G3 Optimal LIVING 55.3 yes 10.86666667 NA 85.8 "-2,192.4" 805.2 "3,105.9" 0.233 0.034 0.398 0.898 0 0 0 1 0.266230113
TCGA-29-1703 TCGA-discovery Proliferative 56.0 RESISTANT IIIC G2 Optimal LIVING 60 yes 10.8 NA "1,048.2" 842.8 "1,107.6" "2,241.3" 0.408 0.353 0.423 0.743 1 0 0 1 0.037642837
TCGA-25-2393 TCGA-discovery Proliferative 81.0 unknown IIIC G3 Suboptimal DECEASED 38.6 yes 10.16666667 NA -192.3 230.6 "1,580.7" "3,507.5" 0.000 0.315 0.550 0.925 0 0 1 1 0.104966797
TCGA-13-0920 TCGA-discovery Proliferative 65.0 RESISTANT IIIC G3 Optimal LIVING 14.0 yes 9.9 NA 203.5 -77.3 949.4 "2,334.8" 0.203 0.142 0.339 0.777 0 0 0 1 0.230425962
TCGA-13-0717 TCGA-discovery Proliferative 54.0 RESISTANT IIIC G3 Suboptimal DECEASED 24.9 yes 9.8 NA 997.6 "-1,339.0" "1,190.4" "2,942.0" 0.455 0.022 0.446 0.908 1 0 0 1 0.228552739
TCGA-13-0757 TCGA-discovery Proliferative 71.0 RESISTANT IIIC G3 Optimal DECEASED 11.3 yes 9.766666667 NA -32.0 867.0 "2,236.3" "2,926.6" 0.130 0.338 0.689 0.887 0 0 1 1 0.053668266
TCGA-04-1364 TCGA-discovery Proliferative 61.0 RESISTANT IIIC G3 Optimal DECEASED 34.1 yes 9.6 NA -361.6 "-1,533.3" "1,021.1" "2,841.2" 0.205 0.156 0.422 0.850 0 0 0 1 0.259937335
TCGA-10-0926 TCGA-discovery Proliferative 63.0 SENSITIVE IIIC G3 Suboptimal DECEASED 26.3 yes 9.566666667 NA 627.1 -300.7 "2,149.8" "3,309.6" 0.313 0.132 0.695 0.861 0 0 1 1 0.106294495
TCGA-29-1702 TCGA-discovery Proliferative 84.0 unknown IIIC G3 Optimal DECEASED 18.9 yes 9.5 NA 99.7 153.2 "1,232.3" "3,114.4" 0.211 0.214 0.536 0.864 0 0 0 1 0.213069482
TCGA-30-1866 TCGA-discovery Proliferative 61.0 RESISTANT IV G2 Optimal DECEASED 37.1 yes 9.466666667 NA "1,155.4" "1,043.3" 543.3 "2,249.4" 0.499 0.628 0.349 0.688 1 0 0 1 0.052335531
TCGA-25-1316 TCGA-discovery Proliferative 55.0 SENSITIVE IIIC G3 Optimal DECEASED 37.5 yes 9.2 NA 126.4 541.0 "1,759.7" "2,874.5" 0.381 0.369 0.650 0.823 0 0 1 1 0.08494939
TCGA-09-0369 TCGA-discovery Proliferative 56.0 RESISTANT IIIC G3 Optimal DECEASED 36.0 yes 9.1 NA -541.6 -636.9 "2,096.8" "3,348.4" 0.107 0.183 0.743 0.905 0 0 1 1 0.11610916
TCGA-24-1558 TCGA-discovery Proliferative 73.0 RESISTANT IIIC G3 Optimal DECEASED 19.8 yes 9.1 NA 688.5 492.2 682.4 "1,901.5" 0.389 0.356 0.374 0.744 0 0 0 1 0.085174907
TCGA-57-1586 TCGA-discovery Proliferative 66.0 RESISTANT IIIC G3 Suboptimal LIVING 22.6 yes 8.633333333 NA "1,628.7" 982.6 73.7 "1,872.8" 0.588 0.426 0.127 0.610 1 0 0 1 0.032135149
TCGA-13-0727 TCGA-discovery Proliferative 71.0 RESISTANT IIIC G3 Optimal DECEASED 15.4 yes 8.433333333 NA "1,043.8" 526.0 "1,288.3" "2,048.0" 0.423 0.300 0.473 0.729 1 0 0 1 0.083437997
TCGA-25-1870 TCGA-discovery Proliferative 59.0 unknown IIIC G3 Suboptimal DECEASED 15.1 yes 8.066666667 NA "1,087.0" 680.9 "1,087.2" "1,998.3" 0.420 0.446 0.422 0.699 1 0 0 1 0.025334012
TCGA-13-1477 TCGA-discovery Proliferative 49.0 RESISTANT IV G2 Optimal DECEASED 55.4 yes 7.8 NA "1,056.9" -545.1 "1,715.3" "1,873.2" 0.551 0.163 0.571 0.626 1 0 1 1 0.068940021
TCGA-29-1774 TCGA-discovery Proliferative 82.0 unknown IIIC G3 Suboptimal LIVING 17.5 yes 7.766666667 NA -250.9 -882.9 "1,320.8" "3,125.5" 0.119 0.135 0.509 0.883 0 0 0 1 0.234830703
TCGA-25-1871 TCGA-discovery Proliferative 70.0 unknown IIIC G3 Suboptimal DECEASED 25.3 yes 7.666666667 NA -112.2 "-1,482.8" 781.0 "3,640.7" 0.099 0.135 0.431 0.941 0 0 0 1 0.311072937
TCGA-04-1525 TCGA-discovery Proliferative 47.0 RESISTANT IIIC G3 Optimal DECEASED 38.9 yes 7.066666667 NA "1,261.1" 618.9 920.3 "1,221.9" 0.548 0.332 0.305 0.457 1 0 0 1 0.004993839
TCGA-59-2350 TCGA-discovery Proliferative 44.0 unknown IV G3 Optimal DECEASED 22.6 yes 7.033333333 NA 756.4 "1,392.2" "1,268.2" "2,779.9" 0.399 0.666 0.533 0.831 0 0 0 1 0.087225465
TCGA-24-1548 TCGA-discovery Proliferative 57.0 RESISTANT IIIC G3 Optimal DECEASED 16.4 yes 6.9 NA 446.2 "1,132.5" 523.9 "2,558.4" 0.301 0.556 0.324 0.779 0 0 0 1 0.054918645
TCGA-13-0725 TCGA-discovery Proliferative 44.0 RESISTANT IIIC G3 Optimal DECEASED 12.6 yes 6.333333333 NA "1,087.8" "1,496.5" "1,636.4" "1,941.1" 0.462 0.655 0.650 0.675 1 1 1 1 -0.022149563
TCGA-25-1315 TCGA-discovery Proliferative 50.0 RESISTANT IIIC G3 Optimal DECEASED 51.8 yes 5.1 NA 383.2 -572.9 654.4 "3,300.8" 0.306 0.233 0.371 0.944 0 0 0 1 0.252801517
TCGA-24-0982 TCGA-discovery Proliferative 77.0 SENSITIVE IIIC G3 Optimal DECEASED 22.6 yes 5.066666667 NA 877.7 -316.9 "1,486.2" "1,590.2" 0.338 0.150 0.624 0.645 1 0 1 1 0.114543499
TCGA-24-1560 TCGA-discovery Proliferative 51.0 RESISTANT IIIC G4 Optimal DECEASED 44.7 yes 4.766666667 NA "1,127.9" 542.9 396.4 "1,798.6" 0.486 0.347 0.270 0.633 1 0 0 1 0.070273857
TCGA-04-1350 TCGA-discovery Proliferative 46.0 unknown IIIC G3 Suboptimal LIVING 60 yes 3.7 NA 391.5 "-1,114.7" 550.2 "2,665.1" 0.461 0.044 0.303 0.772 0 0 0 1 0.220619876
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