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Feature counts for ECE 1508 assignment
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| These are the proportions of variants possessing features used in each question for the various questions comprising ECE1508 assignment 1. |
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| label | conservation | total | |
|---|---|---|---|
| benign | 0.772 | 10288 | |
| likely_benign | 0.823 | 7831 | |
| likely_pathogenic | 0.763 | 4552 | |
| pathogenic | 0.726 | 23807 | |
| unknown | 0.805 | 21944 |
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| label | MAF | conservation | total | |
|---|---|---|---|---|
| benign | 0.775 | 0.772 | 10288 | |
| likely_benign | 0.438 | 0.823 | 7831 | |
| likely_pathogenic | 0.045 | 0.763 | 4552 | |
| pathogenic | 0.045 | 0.726 | 23807 | |
| unknown | 0.183 | 0.805 | 21944 |
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| label | MAF | ass | conservation | dss | int | nsf | nsm | r3 | r5 | ref | syn | u3 | u5 | total | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| benign | 0.775 | 1.000 | 0.772 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 10288 | |
| likely_benign | 0.438 | 1.000 | 0.823 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 7831 | |
| likely_pathogenic | 0.045 | 1.000 | 0.763 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 4552 | |
| pathogenic | 0.045 | 1.000 | 0.726 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 23807 | |
| unknown | 0.183 | 1.000 | 0.805 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 21944 |
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| label | MAF | Polyphen2_HDIV_pred | Polyphen2_HDIV_score | Polyphen2_HVAR_pred | Polyphen2_HVAR_score | SIFT_pred | SIFT_score | ass | conservation | dss | int | nsf | nsm | r3 | r5 | ref | syn | u3 | u5 | total | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| benign | 0.775 | 0.244 | 0.244 | 0.244 | 0.244 | 0.241 | 0.241 | 1.000 | 0.772 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 10288 | |
| likely_benign | 0.438 | 0.276 | 0.276 | 0.276 | 0.276 | 0.272 | 0.272 | 1.000 | 0.823 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 7831 | |
| likely_pathogenic | 0.045 | 0.567 | 0.567 | 0.567 | 0.567 | 0.553 | 0.553 | 1.000 | 0.763 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 4552 | |
| pathogenic | 0.045 | 0.493 | 0.493 | 0.493 | 0.493 | 0.484 | 0.484 | 1.000 | 0.726 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 23807 | |
| unknown | 0.183 | 0.745 | 0.745 | 0.745 | 0.745 | 0.733 | 0.733 | 1.000 | 0.805 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 21944 |
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