jwintersinger

CREATE TABLE Employee (
  SSN TEXT(10),
  Birthdate DATETIME,
  First_Name TEXT,
  Last_Name TEXT,
  Salary DOUBLE,
  Super_SSN TEXT(10),
  Storefront_ID INTEGER,
  Depot_ID INTEGER,
  Spaceship_ID INTEGER,

jwintersinger

Overall view
Catalytic site
  Cofactor?
Noncovalent interactions of wt aa
  Indicate that quaternary structure occurs
Mutated catalytic site
Where does non-conserved residue point – inside structure, toward substrate/cofactor/subunit, toward outisde without interaction with other molecules?

S210F:
Overpacking of residues

jwintersinger

#!/bin/sh
who | grep -i blonde | date; cd ~; unzip; touch; strip; finger; mount; gasp; yes; uptime; umount; sleep

jwintersinger

import matplotlib.pyplot as plt
import numpy as np
import pandas

def char_range(c1, c2):
  for c in xrange(ord(c1), ord(c2) + 1):
    yield chr(c)

def make_plate_range(a, b, number):
  for c in char_range(a, b):

jwintersinger

Working with: Lymnaea stagnalis

Proteins:
  Connexins: vertebrates
  Innexins: invertebrates
  Panexins: both
    Somewhat similar to innexins

Other choices:
  Aplysia californica

jwintersinger

ENSG00000000003
ENSG00000000460
ENSG00000001461
ENSG00000001561
ENSG00000002016
ENSG00000002745
ENSG00000002822
ENSG00000003436
ENSG00000003756
ENSG00000003987

jwintersinger

def main():
  lines = open('alignment.aln').readlines()
  lines = [line for line in lines if len(line.strip()) > 0]

  header = lines[0]
  del lines[0]

  num_lines = 3

  for k in range(0, len(lines), num_lines + 1):

jwintersinger

import argparse
from __future__ import with_statement
from Bio import SeqIO

def main():
  parser = argparse.ArgumentParser()
  parser.add_argument("inputFile", help="Input FASTA file")
  parser.add_argument("outputFile",help="Filtered FASTA output")
  parser.add_argument("-d", "--header", default=None, dest="sampleName", help="Sample name to remove")
  args = parser.parse_args()

jwintersinger

  testHelpers.makePutReq('/api/memos/1', {
    title: 'My new title',
    postDate: 1433820201,
    content: 'My new body.',
    id: 1,
    posterID: 2
  }, function(res) {
    // On response
  }, function(body) {
    // On complete

jwintersinger

Search should be consistent
  Centre the search
  Put it in top right/left, just below horizontal bar
    On opposing side of it, have header describing what page you're on ("Dashboard", "Discussion")
      Then, search always stays in exact same spot
  How we should have search bar on every page: like on search results page, with bar across top -- perhaps centre it


  Calling attention to search:
    Can put light grey bar behind it