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@k3yavi
Last active June 21, 2016 20:13
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```
wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh
chmod +x Miniconda3-latest-Linux-x86_64.sh
./Miniconda3-latest-Linux-x86_64.sh
#<Might have to write Yes and press enter>
ruby -e "$(curl -fsSL https://raw.githubusercontent.com/Linuxbrew/install/master/install)"
brew install zsh
echo 'export PATH="/home/users/srivaa11/.linuxbrew/bin:$PATH"' >>~/.bash_profile
echo 'export MANPATH="/home/users/srivaa11/.linuxbrew/share/man:$MANPATH:"' >>~/.bash_profile
echo 'export INFOPATH="/home/users/srivaa11/.linuxbrew/share/info:$INFOPATH:"' >>~/.bash_profile
echo 'export SHELL="which zsh"'
echo '[ -z "$ZSH_VERSION" ] && exec "$SHELL" -l'
wget https://raw.githubusercontent.com/robbyrussell/oh-my-zsh/master/tools/install.sh
echo 'Comment out exit from line 30 in install.sh'
chmod +x install.sh
./install.sh
echo 'change theme to bira in .zshrc'
brew install tmux
echo 'unbind C-b' > .tmux.conf
echo 'set -g prefix C-s >> .tmux.conf
echo 'bind C-s send-prefix >> .tmux.conf
echo 'tmux attach-session -t ccs' > open.sh
echo 'tmux detach' > detach.sh
brew install cmake
brew install boost
conda create -n setup python=2.7
conda create -n ccs --clone setup
source activate ccs
pip install cython
pip install pysam
conda install h5py
```
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