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Created November 22, 2018 10:18
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__/\__ / ___| _ __ _____ _____| |_ ___ _ __ _ __ ___
\ / \___ \| '_ \ / _ \ \ /\ / / __| __/ _ \| '__| '_ ` _ \
/_ _\ ___) | | | | (_) \ V V /\__ \ || (_) | | | | | | | |
\/ |____/|_| |_|\___/ \_/\_/ |___/\__\___/|_| |_| |_| |_|
===============================================================
:: Snowstorm, SNOMED CT Terminology Server :: (v2.1.1-SNAPSHOT)
2018-11-22 06:17:35.123 INFO 1773 --- [ main] org.snomed.snowstorm.App : Starting App v2.1.1-SNAPSHOT on ip-10-0-13-236 with PID 1773 (/home/rda/snowstorm-2.1.1-SNAPSHOT.jar started by rda in /home/rda)
2018-11-22 06:17:35.128 INFO 1773 --- [ main] org.snomed.snowstorm.App : No active profile set, falling back to default profiles: default
2018-11-22 06:17:35.240 INFO 1773 --- [ main] ConfigServletWebServerApplicationContext : Refreshing org.springframework.boot.web.servlet.context.AnnotationConfigServletWebServerApplicationContext@5a42bbf4: startup date [Thu Nov 22 06:17:35 UTC 2018]; root of context hierarchy
2018-11-22 06:17:36.525 INFO 1773 --- [ main] o.s.b.f.s.DefaultListableBeanFactory : Overriding bean definition for bean 'domainEntityConfiguration' with a different definition: replacing [Generic bean: class [org.snomed.snowstorm.core.data.services.DomainEntityConfiguration]; scope=singleton; abstract=false; lazyInit=false; autowireMode=0; dependencyCheck=0; autowireCandidate=true; primary=false; factoryBeanName=null; factoryMethodName=null; initMethodName=null; destroyMethodName=null; defined in URL [jar:file:/home/rda/snowstorm-2.1.1-SNAPSHOT.jar!/BOOT-INF/classes!/org/snomed/snowstorm/core/data/services/DomainEntityConfiguration.class]] with [Root bean: class [null]; scope=; abstract=false; lazyInit=false; autowireMode=3; dependencyCheck=0; autowireCandidate=true; primary=false; factoryBeanName=app; factoryMethodName=domainEntityConfiguration; initMethodName=null; destroyMethodName=(inferred); defined in org.snomed.snowstorm.App]
2018-11-22 06:17:37.160 INFO 1773 --- [ main] f.a.AutowiredAnnotationBeanPostProcessor : JSR-330 'javax.inject.Inject' annotation found and supported for autowiring
2018-11-22 06:17:37.758 INFO 1773 --- [ main] o.s.b.w.embedded.tomcat.TomcatWebServer : Tomcat initialized with port(s): 8080 (http)
2018-11-22 06:17:37.795 INFO 1773 --- [ main] o.apache.catalina.core.StandardService : Starting service [Tomcat]
2018-11-22 06:17:37.796 INFO 1773 --- [ main] org.apache.catalina.core.StandardEngine : Starting Servlet Engine: Apache Tomcat/8.5.29
2018-11-22 06:17:37.811 INFO 1773 --- [ost-startStop-1] o.a.catalina.core.AprLifecycleListener : The APR based Apache Tomcat Native library which allows optimal performance in production environments was not found on the java.library.path: [/usr/java/packages/lib/amd64:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib]
2018-11-22 06:17:38.007 INFO 1773 --- [ost-startStop-1] o.a.c.c.C.[Tomcat].[localhost].[/] : Initializing Spring embedded WebApplicationContext
2018-11-22 06:17:38.008 INFO 1773 --- [ost-startStop-1] o.s.web.context.ContextLoader : Root WebApplicationContext: initialization completed in 2771 ms
2018-11-22 06:17:42.246 INFO 1773 --- [heManagerDaemon] o.s.s.c.d.s.i.IdentifierCacheManager : Identifier cache manager polling commencing with 10 second period.
2018-11-22 06:17:42.248 INFO 1773 --- [heManagerDaemon] o.s.s.c.d.s.i.IdentifierCacheManager : Topping up IdCache(0 - 00) by 1000
2018-11-22 06:17:42.260 INFO 1773 --- [heManagerDaemon] o.s.s.c.d.s.i.IdentifierCacheManager : Top up of IdCache(0 - 00) by 1000 complete
2018-11-22 06:17:42.260 INFO 1773 --- [heManagerDaemon] o.s.s.c.d.s.i.IdentifierCacheManager : Topping up IdCache(0 - 02) by 4000
2018-11-22 06:17:42.277 INFO 1773 --- [heManagerDaemon] o.s.s.c.d.s.i.IdentifierCacheManager : Top up of IdCache(0 - 02) by 4000 complete
2018-11-22 06:17:42.277 INFO 1773 --- [heManagerDaemon] o.s.s.c.d.s.i.IdentifierCacheManager : Topping up IdCache(0 - 01) by 2000
2018-11-22 06:17:42.284 INFO 1773 --- [heManagerDaemon] o.s.s.c.d.s.i.IdentifierCacheManager : Top up of IdCache(0 - 01) by 2000 complete
2018-11-22 06:17:43.313 INFO 1773 --- [ost-startStop-1] ca.uhn.fhir.util.VersionUtil : HAPI FHIR version is: 3.2.0
2018-11-22 06:17:43.537 INFO 1773 --- [ost-startStop-1] o.s.b.w.servlet.FilterRegistrationBean : Mapping filter: 'characterEncodingFilter' to: [/*]
2018-11-22 06:17:43.537 INFO 1773 --- [ost-startStop-1] o.s.b.w.servlet.FilterRegistrationBean : Mapping filter: 'hiddenHttpMethodFilter' to: [/*]
2018-11-22 06:17:43.538 INFO 1773 --- [ost-startStop-1] o.s.b.w.servlet.FilterRegistrationBean : Mapping filter: 'httpPutFormContentFilter' to: [/*]
2018-11-22 06:17:43.538 INFO 1773 --- [ost-startStop-1] o.s.b.w.servlet.FilterRegistrationBean : Mapping filter: 'requestContextFilter' to: [/*]
2018-11-22 06:17:43.538 INFO 1773 --- [ost-startStop-1] .s.DelegatingFilterProxyRegistrationBean : Mapping filter: 'springSecurityFilterChain' to: [/*]
2018-11-22 06:17:43.539 INFO 1773 --- [ost-startStop-1] o.s.b.w.servlet.FilterRegistrationBean : Mapping filter: 'requestHeaderAuthenticationDecorator' to: [/*]
2018-11-22 06:17:43.539 INFO 1773 --- [ost-startStop-1] o.s.b.w.servlet.FilterRegistrationBean : Mapping filter: 'requestHeaderAuthenticationDecoratorWithRequiredRole' to: [/*]
2018-11-22 06:17:43.539 INFO 1773 --- [ost-startStop-1] o.s.b.w.servlet.FilterRegistrationBean : Mapping filter: 'branchPathUriRewriteFilter' to: [/*]
2018-11-22 06:17:43.539 INFO 1773 --- [ost-startStop-1] o.s.b.w.servlet.ServletRegistrationBean : Servlet hapiRestfulServlet mapped to [/fhir/*]
2018-11-22 06:17:43.541 INFO 1773 --- [ost-startStop-1] o.s.b.w.servlet.ServletRegistrationBean : Servlet dispatcherServlet mapped to [/]
2018-11-22 06:17:44.082 ERROR 1773 --- [ main] org.ihtsdo.drools.RuleExecutor : Rules directory does not exist: /opt/snowstorm/snomed-drools-rules
2018-11-22 06:17:45.322 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/merge-reviews],methods=[POST],produces=[application/json]}" onto public org.springframework.http.ResponseEntity<java.lang.Void> org.snomed.snowstorm.rest.BranchController.createMergeReview(org.snomed.snowstorm.rest.pojo.CreateReviewRequest)
2018-11-22 06:17:45.323 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/merge-reviews/{id}],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.core.data.domain.review.MergeReview org.snomed.snowstorm.rest.BranchController.getMergeReview(java.lang.String)
2018-11-22 06:17:45.324 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/merge-reviews/{id}/details],methods=[GET],produces=[application/json]}" onto public java.util.Collection<org.snomed.snowstorm.core.data.domain.review.MergeReviewConceptVersions> org.snomed.snowstorm.rest.BranchController.getMergeReviewConflictingConcepts(java.lang.String,java.lang.String)
2018-11-22 06:17:45.324 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/merge-reviews/{id}/{conceptId}],methods=[POST],produces=[application/json]}" onto public void org.snomed.snowstorm.rest.BranchController.getMergeReviewConflictingConcepts(java.lang.String,java.lang.String,org.snomed.snowstorm.core.data.domain.Concept)
2018-11-22 06:17:45.324 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/merge-reviews/{id}/apply],methods=[POST],produces=[application/json]}" onto public void org.snomed.snowstorm.rest.BranchController.applyMergeReview(java.lang.String) throws org.snomed.snowstorm.core.data.services.ServiceException
2018-11-22 06:17:45.324 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/merges],methods=[POST],produces=[application/json]}" onto public org.springframework.http.ResponseEntity<java.lang.Void> org.snomed.snowstorm.rest.BranchController.mergeBranch(org.snomed.snowstorm.rest.pojo.MergeRequest)
2018-11-22 06:17:45.325 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/merges/{mergeId}],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.core.data.domain.BranchMergeJob org.snomed.snowstorm.rest.BranchController.retrieveMerge(java.lang.String)
2018-11-22 06:17:45.325 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/integrity-check],methods=[POST],produces=[application/json]}" onto public org.snomed.snowstorm.core.data.services.pojo.IntegrityIssueReport org.snomed.snowstorm.rest.BranchController.integrityCheck(java.lang.String)
2018-11-22 06:17:45.325 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/integrity-check-full],methods=[POST],produces=[application/json]}" onto public org.snomed.snowstorm.core.data.services.pojo.IntegrityIssueReport org.snomed.snowstorm.rest.BranchController.fullIntegrityCheck(java.lang.String)
2018-11-22 06:17:45.325 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/branches],methods=[GET],produces=[application/json]}" onto public java.util.List<io.kaicode.elasticvc.domain.Branch> org.snomed.snowstorm.rest.BranchController.retrieveAllBranches()
2018-11-22 06:17:45.326 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/branches],methods=[POST],produces=[application/json]}" onto public org.snomed.snowstorm.rest.pojo.BranchPojo org.snomed.snowstorm.rest.BranchController.createBranch(org.snomed.snowstorm.rest.pojo.CreateBranchRequest)
2018-11-22 06:17:45.326 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/branches/{path}],methods=[PUT],produces=[application/json]}" onto public org.snomed.snowstorm.rest.pojo.BranchPojo org.snomed.snowstorm.rest.BranchController.updateBranch(java.lang.String,org.snomed.snowstorm.rest.pojo.UpdateBranchRequest) throws com.fasterxml.jackson.core.JsonProcessingException
2018-11-22 06:17:45.326 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/branches/{path}],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.rest.pojo.BranchPojo org.snomed.snowstorm.rest.BranchController.retrieveBranch(java.lang.String,boolean)
2018-11-22 06:17:45.326 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/branches/{path}/actions/unlock],methods=[POST],produces=[application/json]}" onto public void org.snomed.snowstorm.rest.BranchController.unlockBranch(java.lang.String)
2018-11-22 06:17:45.326 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/reviews],methods=[POST],produces=[application/json]}" onto public org.springframework.http.ResponseEntity<java.lang.Void> org.snomed.snowstorm.rest.BranchController.createBranchReview(org.snomed.snowstorm.rest.pojo.CreateReviewRequest)
2018-11-22 06:17:45.327 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/reviews/{id}],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.core.data.domain.review.BranchReview org.snomed.snowstorm.rest.BranchController.getBranchReview(java.lang.String)
2018-11-22 06:17:45.327 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/reviews/{id}/concept-changes],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.core.data.domain.review.BranchReviewConceptChanges org.snomed.snowstorm.rest.BranchController.getBranchReviewConceptChanges(java.lang.String)
2018-11-22 06:17:45.328 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/imports],methods=[POST],produces=[application/json]}" onto public org.springframework.http.ResponseEntity<java.lang.Void> org.snomed.snowstorm.rest.ImportController.createImportJob(org.snomed.snowstorm.rest.pojo.ImportCreationRequest)
2018-11-22 06:17:45.329 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/imports/release-patch],methods=[POST],produces=[application/json]}" onto public org.springframework.http.ResponseEntity<java.lang.Void> org.snomed.snowstorm.rest.ImportController.createReleasePatchImportJob(org.snomed.snowstorm.rest.pojo.ImportPatchCreationRequest)
2018-11-22 06:17:45.329 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/imports/{importId}],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.core.rf2.rf2import.ImportJob org.snomed.snowstorm.rest.ImportController.getImportJob(java.lang.String)
2018-11-22 06:17:45.329 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/imports/{importId}/archive],methods=[POST],consumes=[multipart/form-data],produces=[application/json]}" onto public void org.snomed.snowstorm.rest.ImportController.uploadImportRf2Archive(java.lang.String,org.springframework.web.multipart.MultipartFile)
2018-11-22 06:17:45.330 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/exports],methods=[POST],produces=[application/json]}" onto public org.springframework.http.ResponseEntity<java.lang.Void> org.snomed.snowstorm.rest.ExportController.createExportJob(org.snomed.snowstorm.core.data.domain.jobs.ExportConfiguration)
2018-11-22 06:17:45.330 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/exports/{exportId}],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.core.data.domain.jobs.ExportConfiguration org.snomed.snowstorm.rest.ExportController.getExportJob(java.lang.String)
2018-11-22 06:17:45.330 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/exports/{exportId}/archive],methods=[GET],produces=[application/zip]}" onto public void org.snomed.snowstorm.rest.ExportController.downloadRf2Archive(java.lang.String,javax.servlet.http.HttpServletResponse) throws java.io.IOException
2018-11-22 06:17:45.331 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/codesystems/{shortName}/versions],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.rest.pojo.ItemsPage<org.snomed.snowstorm.core.data.domain.CodeSystemVersion> org.snomed.snowstorm.rest.CodeSystemController.findAllVersions(java.lang.String)
2018-11-22 06:17:45.331 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/codesystems/{shortName}/versions],methods=[POST],produces=[application/json]}" onto public org.springframework.http.ResponseEntity<java.lang.Void> org.snomed.snowstorm.rest.CodeSystemController.createVersion(java.lang.String,org.snomed.snowstorm.rest.pojo.CreateCodeSystemVersionRequest)
2018-11-22 06:17:45.331 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/codesystems/{shortName}/migrate],methods=[POST],produces=[application/json]}" onto public void org.snomed.snowstorm.rest.CodeSystemController.migrateCodeSystem(java.lang.String,org.snomed.snowstorm.rest.pojo.CodeSystemMigrationRequest)
2018-11-22 06:17:45.331 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/codesystems],methods=[POST],produces=[application/json]}" onto public org.springframework.http.ResponseEntity<java.lang.Void> org.snomed.snowstorm.rest.CodeSystemController.createCodeSystem(org.snomed.snowstorm.core.data.domain.CodeSystem)
2018-11-22 06:17:45.332 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/codesystems],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.rest.pojo.ItemsPage<org.snomed.snowstorm.core.data.domain.CodeSystem> org.snomed.snowstorm.rest.CodeSystemController.findAll()
2018-11-22 06:17:45.332 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/codesystems/{shortName}],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.core.data.domain.CodeSystem org.snomed.snowstorm.rest.CodeSystemController.findCodeSystem(java.lang.String)
2018-11-22 06:17:45.332 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/version],methods=[GET]}" onto public org.snomed.snowstorm.rest.pojo.BuildVersion org.snomed.snowstorm.rest.VersionController.getBuildInformation()
2018-11-22 06:17:45.335 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/browser/{branch}/concepts/bulk-load],methods=[POST],produces=[application/json]}" onto public java.util.Collection<org.snomed.snowstorm.core.data.domain.Concept> org.snomed.snowstorm.rest.ConceptController.getBrowserConcepts(java.lang.String,org.snomed.snowstorm.rest.pojo.ConceptIdsPojo,java.lang.String)
2018-11-22 06:17:45.335 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/browser/{branch}/concepts],methods=[GET],produces=[application/json]}" onto public org.springframework.data.domain.Page<? extends org.snomed.snowstorm.core.data.domain.ConceptView> org.snomed.snowstorm.rest.ConceptController.getBrowserConcepts(java.lang.String,int,int,java.lang.String)
2018-11-22 06:17:45.335 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/browser/{branch}/concepts/{conceptId}],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.core.data.domain.ConceptView org.snomed.snowstorm.rest.ConceptController.findBrowserConcept(java.lang.String,java.lang.String,java.lang.String)
2018-11-22 06:17:45.335 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/concepts/{conceptId}/descriptions],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.rest.pojo.ConceptDescriptionsResult org.snomed.snowstorm.rest.ConceptController.findConceptDescriptions(java.lang.String,java.lang.String,java.lang.String)
2018-11-22 06:17:45.336 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/concepts/{conceptId}/descendants],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.rest.pojo.ItemsPage<org.snomed.snowstorm.core.data.domain.ConceptMini> org.snomed.snowstorm.rest.ConceptController.findConceptDescendants(java.lang.String,java.lang.String,boolean,int,int,java.lang.String)
2018-11-22 06:17:45.336 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/concepts/{conceptId}/inbound-relationships],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.rest.pojo.InboundRelationshipsResult org.snomed.snowstorm.rest.ConceptController.findConceptInboundRelationships(java.lang.String,java.lang.String)
2018-11-22 06:17:45.336 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/browser/{branch}/concepts/{conceptId}],methods=[PUT],produces=[application/json]}" onto public org.snomed.snowstorm.core.data.domain.ConceptView org.snomed.snowstorm.rest.ConceptController.updateConcept(java.lang.String,java.lang.String,org.snomed.snowstorm.core.data.domain.ConceptView,java.lang.String) throws org.snomed.snowstorm.core.data.services.ServiceException
2018-11-22 06:17:45.336 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/browser/{branch}/concepts],methods=[POST],produces=[application/json]}" onto public org.snomed.snowstorm.core.data.domain.ConceptView org.snomed.snowstorm.rest.ConceptController.createConcept(java.lang.String,org.snomed.snowstorm.core.data.domain.ConceptView,java.lang.String) throws org.snomed.snowstorm.core.data.services.ServiceException
2018-11-22 06:17:45.336 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/concepts/{conceptId}],methods=[DELETE],produces=[application/json]}" onto public void org.snomed.snowstorm.rest.ConceptController.deleteConcept(java.lang.String,java.lang.String)
2018-11-22 06:17:45.336 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/browser/{branch}/concepts/bulk],methods=[POST],produces=[application/json]}" onto public org.springframework.http.ResponseEntity org.snomed.snowstorm.rest.ConceptController.createConceptBulkChange(java.lang.String,java.util.List<org.snomed.snowstorm.core.data.domain.ConceptView>,org.springframework.web.util.UriComponentsBuilder)
2018-11-22 06:17:45.337 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/concepts],methods=[GET],produces=[application/json || text/csv]}" onto public org.snomed.snowstorm.rest.pojo.ItemsPage<org.snomed.snowstorm.core.data.domain.ConceptMini> org.snomed.snowstorm.rest.ConceptController.findConcepts(java.lang.String,java.lang.Boolean,java.lang.String,java.lang.String,java.lang.String,java.lang.String,java.lang.String,java.util.Set<java.lang.String>,int,int,java.lang.String)
2018-11-22 06:17:45.337 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/concepts/{conceptId}],methods=[GET],produces=[application/json || text/csv]}" onto public org.snomed.snowstorm.core.data.domain.ConceptMini org.snomed.snowstorm.rest.ConceptController.findConcept(java.lang.String,java.lang.String,java.lang.String)
2018-11-22 06:17:45.337 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/browser/{branch}/concepts/bulk/{bulkChangeId}],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.core.data.services.pojo.AsyncConceptChangeBatch org.snomed.snowstorm.rest.ConceptController.getConceptBulkChange(java.lang.String,java.lang.String)
2018-11-22 06:17:45.337 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/browser/{branch}/concepts/{conceptId}/children],methods=[GET],produces=[application/json]}" onto public java.util.Collection<org.snomed.snowstorm.core.data.domain.ConceptMini> org.snomed.snowstorm.rest.ConceptController.findConceptChildren(java.lang.String,java.lang.String,org.snomed.snowstorm.core.data.domain.Relationship$CharacteristicType,java.lang.String)
2018-11-22 06:17:45.338 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/browser/{branch}/concepts/{conceptId}/parents],methods=[GET],produces=[application/json]}" onto public java.util.Collection<org.snomed.snowstorm.core.data.domain.ConceptMini> org.snomed.snowstorm.rest.ConceptController.findConceptParents(java.lang.String,java.lang.String,org.snomed.snowstorm.core.data.domain.Relationship$CharacteristicType,java.lang.String)
2018-11-22 06:17:45.338 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/browser/{branch}/concepts/{conceptId}/ancestors],methods=[GET],produces=[application/json]}" onto public java.util.Collection<org.snomed.snowstorm.core.data.domain.ConceptMini> org.snomed.snowstorm.rest.ConceptController.findConceptAncestors(java.lang.String,java.lang.String,org.snomed.snowstorm.core.data.domain.Relationship$CharacteristicType,java.lang.String)
2018-11-22 06:17:45.338 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/rebuild/{branch}],methods=[POST],produces=[application/json]}" onto public void org.snomed.snowstorm.rest.ConceptController.rebuildBranchTransitiveClosure(java.lang.String) throws org.snomed.otf.owltoolkit.conversion.ConversionException
2018-11-22 06:17:45.338 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/concepts/{conceptId}/authoring-form],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.core.data.domain.expression.Expression org.snomed.snowstorm.rest.ConceptController.getConceptAuthoringForm(java.lang.String,java.lang.String,java.lang.String)
2018-11-22 06:17:45.339 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/concepts/search],methods=[POST],produces=[application/json || text/csv]}" onto public org.snomed.snowstorm.rest.pojo.ItemsPage<org.snomed.snowstorm.core.data.domain.ConceptMini> org.snomed.snowstorm.rest.ConceptController.search(java.lang.String,org.snomed.snowstorm.rest.pojo.ConceptSearchRequest,java.lang.String)
2018-11-22 06:17:45.339 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/relationships],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.rest.pojo.ItemsPage<org.snomed.snowstorm.core.data.domain.Relationship> org.snomed.snowstorm.rest.RelationshipController.findRelationships(java.lang.String,java.lang.Boolean,java.lang.String,java.lang.String,java.lang.String,java.lang.String,java.lang.String,org.snomed.snowstorm.rest.RelationshipController$RelationshipCharacteristicType,java.lang.Integer,int,int,java.lang.String)
2018-11-22 06:17:45.340 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/relationships/{relationshipId}],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.core.data.domain.Relationship org.snomed.snowstorm.rest.RelationshipController.fetchRelationship(java.lang.String,java.lang.String,java.lang.String)
2018-11-22 06:17:45.341 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/mrcm/reload],methods=[POST],consumes=[multipart/form-data],produces=[application/json]}" onto public void org.snomed.snowstorm.rest.MRCMController.reloadMrcm() throws org.snomed.snowstorm.core.data.services.ServiceException
2018-11-22 06:17:45.341 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/mrcm/{path}/domain-attributes],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.rest.pojo.ItemsPage<org.snomed.snowstorm.core.data.domain.ConceptMini> org.snomed.snowstorm.rest.MRCMController.retrieveDomainAttributes(java.lang.String,java.util.Set<java.lang.Long>,java.lang.String)
2018-11-22 06:17:45.341 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/mrcm/{path}/attribute-values/{attributeId}],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.rest.pojo.ItemsPage<org.snomed.snowstorm.core.data.domain.ConceptMini> org.snomed.snowstorm.rest.MRCMController.retrieveAttributeValues(java.lang.String,java.lang.String,java.lang.String,java.lang.String)
2018-11-22 06:17:45.342 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/members],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.rest.pojo.ItemsPage<org.snomed.snowstorm.core.data.domain.ReferenceSetMember> org.snomed.snowstorm.rest.ReferenceSetMemberController.findRefsetMembers(java.lang.String,java.lang.String,java.lang.String,java.lang.Boolean,java.lang.String,java.lang.String,int,int,java.lang.String)
2018-11-22 06:17:45.342 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/members/{uuid}],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.core.data.domain.ReferenceSetMember org.snomed.snowstorm.rest.ReferenceSetMemberController.fetchMember(java.lang.String,java.lang.String,java.lang.String)
2018-11-22 06:17:45.344 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/members/{uuid}],methods=[DELETE],produces=[application/json]}" onto public void org.snomed.snowstorm.rest.ReferenceSetMemberController.deleteMember(java.lang.String,java.lang.String)
2018-11-22 06:17:45.345 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/browser/{branch}/validate/concept],methods=[POST],produces=[application/json]}" onto public java.util.List<org.ihtsdo.drools.response.InvalidContent> org.snomed.snowstorm.rest.ConceptValidationController.validateConcept(java.lang.String,org.snomed.snowstorm.core.data.domain.Concept) throws org.snomed.snowstorm.core.data.services.ServiceException
2018-11-22 06:17:45.345 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/browser/{branch}/validate/concepts],methods=[POST],produces=[application/json]}" onto public java.util.List<org.ihtsdo.drools.response.InvalidContent> org.snomed.snowstorm.rest.ConceptValidationController.validateConcepts(java.lang.String,java.util.Set<org.snomed.snowstorm.core.data.domain.Concept>) throws org.snomed.snowstorm.core.data.services.ServiceException
2018-11-22 06:17:45.346 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/authoring-mirror/activities],methods=[POST],produces=[application/json]}" onto public void org.snomed.snowstorm.rest.AuthoringMirrorController.mirrorAuthoring(org.springframework.web.multipart.MultipartFile) throws java.io.IOException,org.snomed.snowstorm.core.data.services.ServiceException
2018-11-22 06:17:45.347 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/classifications],methods=[POST],produces=[application/json]}" onto public org.springframework.http.ResponseEntity org.snomed.snowstorm.rest.ClassificationController.createClassification(java.lang.String,java.lang.String,org.springframework.web.util.UriComponentsBuilder) throws org.snomed.snowstorm.core.data.services.ServiceException
2018-11-22 06:17:45.348 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/classifications],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.rest.pojo.ItemsPage<org.snomed.snowstorm.core.data.domain.classification.Classification> org.snomed.snowstorm.rest.ClassificationController.findClassifications(java.lang.String)
2018-11-22 06:17:45.348 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/classifications/{classificationId}],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.core.data.domain.classification.Classification org.snomed.snowstorm.rest.ClassificationController.findClassification(java.lang.String,java.lang.String)
2018-11-22 06:17:45.348 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/classifications/{classificationId}/relationship-changes],methods=[GET],produces=[application/json || text/csv]}" onto public org.snomed.snowstorm.rest.pojo.ItemsPage<org.snomed.snowstorm.core.data.domain.classification.RelationshipChange> org.snomed.snowstorm.rest.ClassificationController.getRelationshipChanges(java.lang.String,java.lang.String,int,int,java.lang.String)
2018-11-22 06:17:45.349 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/classifications/{classificationId}/equivalent-concepts],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.rest.pojo.ItemsPage<org.snomed.snowstorm.core.data.services.classification.pojo.EquivalentConceptsResponse> org.snomed.snowstorm.rest.ClassificationController.getEquivalentConcepts(java.lang.String,java.lang.String,int,int,java.lang.String)
2018-11-22 06:17:45.349 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/classifications/{classificationId}/concept-preview/{conceptId}],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.core.data.domain.ConceptView org.snomed.snowstorm.rest.ClassificationController.getConceptPreview(java.lang.String,java.lang.String,java.lang.String,java.lang.String)
2018-11-22 06:17:45.349 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/classifications/{classificationId}],methods=[PUT],produces=[application/json]}" onto public void org.snomed.snowstorm.rest.ClassificationController.updateClassification(java.lang.String,java.lang.String,org.snomed.snowstorm.rest.pojo.ClassificationUpdateRequest)
2018-11-22 06:17:45.350 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/],methods=[GET]}" onto public void org.snomed.snowstorm.rest.RootController.getRoot(javax.servlet.http.HttpServletResponse) throws java.io.IOException
2018-11-22 06:17:45.351 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/descriptions],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.rest.pojo.ItemsPage<org.snomed.snowstorm.core.data.domain.Description> org.snomed.snowstorm.rest.DescriptionController.findDescriptions(java.lang.String,java.lang.String,int,int,java.lang.String)
2018-11-22 06:17:45.351 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/browser/{branch}/descriptions],methods=[GET],produces=[application/json]}" onto public org.springframework.data.domain.Page<org.snomed.snowstorm.rest.pojo.BrowserDescriptionSearchResult> org.snomed.snowstorm.rest.DescriptionController.findBrowserDescriptions(java.lang.String,java.lang.String,java.lang.Boolean,java.lang.String,int,int,java.lang.String)
2018-11-22 06:17:45.351 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/descriptions/{descriptionId}],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.core.data.domain.Description org.snomed.snowstorm.rest.DescriptionController.fetchDescription(java.lang.String,java.lang.String)
2018-11-22 06:17:45.352 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/v2/api-docs],methods=[GET],produces=[application/json || application/hal+json]}" onto public org.springframework.http.ResponseEntity<springfox.documentation.spring.web.json.Json> springfox.documentation.swagger2.web.Swagger2Controller.getDocumentation(java.lang.String,javax.servlet.http.HttpServletRequest)
2018-11-22 06:17:45.355 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/swagger-resources/configuration/ui]}" onto org.springframework.http.ResponseEntity<springfox.documentation.swagger.web.UiConfiguration> springfox.documentation.swagger.web.ApiResourceController.uiConfiguration()
2018-11-22 06:17:45.356 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/swagger-resources/configuration/security]}" onto org.springframework.http.ResponseEntity<springfox.documentation.swagger.web.SecurityConfiguration> springfox.documentation.swagger.web.ApiResourceController.securityConfiguration()
2018-11-22 06:17:45.357 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/swagger-resources]}" onto org.springframework.http.ResponseEntity<java.util.List<springfox.documentation.swagger.web.SwaggerResource>> springfox.documentation.swagger.web.ApiResourceController.swaggerResources()
2018-11-22 06:17:45.361 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/error],produces=[text/html]}" onto public org.springframework.web.servlet.ModelAndView org.springframework.boot.autoconfigure.web.servlet.error.BasicErrorController.errorHtml(javax.servlet.http.HttpServletRequest,javax.servlet.http.HttpServletResponse)
2018-11-22 06:17:45.361 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/error]}" onto public org.springframework.http.ResponseEntity<java.util.Map<java.lang.String, java.lang.Object>> org.springframework.boot.autoconfigure.web.servlet.error.BasicErrorController.error(javax.servlet.http.HttpServletRequest)
2018-11-22 06:17:45.834 INFO 1773 --- [ main] o.s.s.web.DefaultSecurityFilterChain : Creating filter chain: org.springframework.security.web.util.matcher.AnyRequestMatcher@1, [org.springframework.security.web.context.request.async.WebAsyncManagerIntegrationFilter@2eea88a1, org.springframework.security.web.context.SecurityContextPersistenceFilter@3214ee6, org.springframework.security.web.header.HeaderWriterFilter@6bb4dd34, org.springframework.security.web.authentication.logout.LogoutFilter@68878f6d, org.springframework.security.web.savedrequest.RequestCacheAwareFilter@4a07d605, org.springframework.security.web.servletapi.SecurityContextHolderAwareRequestFilter@2bdd8394, org.springframework.security.web.authentication.AnonymousAuthenticationFilter@7ac296f6, org.springframework.security.web.session.SessionManagementFilter@45efd90f, org.springframework.security.web.access.ExceptionTranslationFilter@7f2cfe3f]
2018-11-22 06:17:46.234 INFO 1773 --- [ main] o.s.w.s.handler.SimpleUrlHandlerMapping : Mapped URL path [/**/favicon.ico] onto handler of type [class org.springframework.web.servlet.resource.ResourceHttpRequestHandler]
2018-11-22 06:17:46.462 INFO 1773 --- [ main] s.w.s.m.m.a.RequestMappingHandlerAdapter : Looking for @ControllerAdvice: org.springframework.boot.web.servlet.context.AnnotationConfigServletWebServerApplicationContext@5a42bbf4: startup date [Thu Nov 22 06:17:35 UTC 2018]; root of context hierarchy
2018-11-22 06:17:46.562 INFO 1773 --- [ main] o.s.w.s.handler.SimpleUrlHandlerMapping : Mapped URL path [/webjars/**] onto handler of type [class org.springframework.web.servlet.resource.ResourceHttpRequestHandler]
2018-11-22 06:17:46.562 INFO 1773 --- [ main] o.s.w.s.handler.SimpleUrlHandlerMapping : Mapped URL path [/**] onto handler of type [class org.springframework.web.servlet.resource.ResourceHttpRequestHandler]
2018-11-22 06:17:46.590 INFO 1773 --- [ main] .m.m.a.ExceptionHandlerExceptionResolver : Detected @ExceptionHandler methods in restControllerAdvice
2018-11-22 06:17:46.924 INFO 1773 --- [ main] o.s.j.e.a.AnnotationMBeanExporter : Registering beans for JMX exposure on startup
2018-11-22 06:17:46.935 INFO 1773 --- [ main] o.s.c.support.DefaultLifecycleProcessor : Starting beans in phase 2147483647
2018-11-22 06:17:46.936 INFO 1773 --- [ main] d.s.w.p.DocumentationPluginsBootstrapper : Context refreshed
2018-11-22 06:17:46.947 INFO 1773 --- [ main] d.s.w.p.DocumentationPluginsBootstrapper : Found 1 custom documentation plugin(s)
2018-11-22 06:17:46.958 INFO 1773 --- [ main] s.d.s.w.s.ApiListingReferenceScanner : Scanning for api listing references
2018-11-22 06:17:47.721 INFO 1773 --- [ main] o.apache.activemq.broker.BrokerService : Using Persistence Adapter: MemoryPersistenceAdapter
2018-11-22 06:17:47.771 INFO 1773 --- [ JMX connector] o.a.a.broker.jmx.ManagementContext : JMX consoles can connect to service:jmx:rmi:///jndi/rmi://localhost:1099/jmxrmi
2018-11-22 06:17:47.888 INFO 1773 --- [ main] o.apache.activemq.broker.BrokerService : Apache ActiveMQ 5.15.3 (localhost, ID:ip-10-0-13-236-46759-1542867467744-0:1) is starting
2018-11-22 06:17:47.896 INFO 1773 --- [ main] o.apache.activemq.broker.BrokerService : Apache ActiveMQ 5.15.3 (localhost, ID:ip-10-0-13-236-46759-1542867467744-0:1) started
2018-11-22 06:17:47.896 INFO 1773 --- [ main] o.apache.activemq.broker.BrokerService : For help or more information please see: http://activemq.apache.org
2018-11-22 06:17:47.936 INFO 1773 --- [ main] o.a.activemq.broker.TransportConnector : Connector vm://localhost started
2018-11-22 06:17:48.052 INFO 1773 --- [ main] o.s.b.w.embedded.tomcat.TomcatWebServer : Tomcat started on port(s): 8080 (http) with context path ''
2018-11-22 06:17:48.059 INFO 1773 --- [ main] org.snomed.snowstorm.App : Started App in 13.545 seconds (JVM running for 14.065)
2018-11-22 06:17:48.068 INFO 1773 --- [ main] i.k.elasticvc.api.ComponentService : Initialising indices
2018-11-22 06:17:48.193 INFO 1773 --- [ main] o.s.s.c.data.services.CodeSystemService : Creating Code System branch 'MAIN'.
2018-11-22 06:17:48.203 INFO 1773 --- [ main] io.kaicode.elasticvc.api.BranchService : Creating branch Branch{path=MAIN, base=1542867468193, head=1542867468193, start=1542867468193, end=null}
2018-11-22 06:17:48.522 INFO 1773 --- [ main] o.s.s.c.data.services.CodeSystemService : Code System 'SNOMEDCT' created.
2018-11-22 06:17:48.527 ERROR 1773 --- [ main] s.s.App$$EnhancerBySpringCGLIB$$33d62d5a : Failed to create MRCM configuration directory /opt/snowstorm/resources/mrcm/MAIN
org.snomed.snowstorm.core.data.services.ServiceException: Failed to create MRCM configuration directory /opt/snowstorm/resources/mrcm/MAIN
at org.snomed.snowstorm.mrcm.MRCMLoader.loadFromFiles(MRCMLoader.java:40) ~[classes!/:2.1.1-SNAPSHOT]
at org.snomed.snowstorm.mrcm.MRCMService.loadFromFiles(MRCMService.java:46) ~[classes!/:2.1.1-SNAPSHOT]
at org.snomed.snowstorm.App.run(App.java:61) [classes!/:2.1.1-SNAPSHOT]
at org.springframework.boot.SpringApplication.callRunner(SpringApplication.java:788) [spring-boot-2.0.1.RELEASE.jar!/:2.0.1.RELEASE]
at org.springframework.boot.SpringApplication.callRunners(SpringApplication.java:778) [spring-boot-2.0.1.RELEASE.jar!/:2.0.1.RELEASE]
at org.springframework.boot.SpringApplication.run(SpringApplication.java:335) [spring-boot-2.0.1.RELEASE.jar!/:2.0.1.RELEASE]
at org.springframework.boot.SpringApplication.run(SpringApplication.java:1255) [spring-boot-2.0.1.RELEASE.jar!/:2.0.1.RELEASE]
at org.springframework.boot.SpringApplication.run(SpringApplication.java:1243) [spring-boot-2.0.1.RELEASE.jar!/:2.0.1.RELEASE]
at org.snomed.snowstorm.App.main(App.java:50) [classes!/:2.1.1-SNAPSHOT]
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[na:1.8.0_181]
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) ~[na:1.8.0_181]
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) ~[na:1.8.0_181]
at java.lang.reflect.Method.invoke(Method.java:498) ~[na:1.8.0_181]
at org.springframework.boot.loader.MainMethodRunner.run(MainMethodRunner.java:48) [snowstorm-2.1.1-SNAPSHOT.jar:2.1.1-SNAPSHOT]
at org.springframework.boot.loader.Launcher.launch(Launcher.java:87) [snowstorm-2.1.1-SNAPSHOT.jar:2.1.1-SNAPSHOT]
at org.springframework.boot.loader.Launcher.launch(Launcher.java:50) [snowstorm-2.1.1-SNAPSHOT.jar:2.1.1-SNAPSHOT]
at org.springframework.boot.loader.JarLauncher.main(JarLauncher.java:51) [snowstorm-2.1.1-SNAPSHOT.jar:2.1.1-SNAPSHOT]
2018-11-22 06:17:48.530 INFO 1773 --- [ main] ConditionEvaluationReportLoggingListener :
Error starting ApplicationContext. To display the conditions report re-run your application with 'debug' enabled.
2018-11-22 06:17:48.532 ERROR 1773 --- [ main] o.s.boot.SpringApplication : Application run failed
java.lang.IllegalStateException: Failed to execute ApplicationRunner
at org.springframework.boot.SpringApplication.callRunner(SpringApplication.java:791) [spring-boot-2.0.1.RELEASE.jar!/:2.0.1.RELEASE]
at org.springframework.boot.SpringApplication.callRunners(SpringApplication.java:778) [spring-boot-2.0.1.RELEASE.jar!/:2.0.1.RELEASE]
at org.springframework.boot.SpringApplication.run(SpringApplication.java:335) [spring-boot-2.0.1.RELEASE.jar!/:2.0.1.RELEASE]
at org.springframework.boot.SpringApplication.run(SpringApplication.java:1255) [spring-boot-2.0.1.RELEASE.jar!/:2.0.1.RELEASE]
at org.springframework.boot.SpringApplication.run(SpringApplication.java:1243) [spring-boot-2.0.1.RELEASE.jar!/:2.0.1.RELEASE]
at org.snomed.snowstorm.App.main(App.java:50) [classes!/:2.1.1-SNAPSHOT]
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[na:1.8.0_181]
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) ~[na:1.8.0_181]
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) ~[na:1.8.0_181]
at java.lang.reflect.Method.invoke(Method.java:498) ~[na:1.8.0_181]
at org.springframework.boot.loader.MainMethodRunner.run(MainMethodRunner.java:48) [snowstorm-2.1.1-SNAPSHOT.jar:2.1.1-SNAPSHOT]
at org.springframework.boot.loader.Launcher.launch(Launcher.java:87) [snowstorm-2.1.1-SNAPSHOT.jar:2.1.1-SNAPSHOT]
at org.springframework.boot.loader.Launcher.launch(Launcher.java:50) [snowstorm-2.1.1-SNAPSHOT.jar:2.1.1-SNAPSHOT]
at org.springframework.boot.loader.JarLauncher.main(JarLauncher.java:51) [snowstorm-2.1.1-SNAPSHOT.jar:2.1.1-SNAPSHOT]
Caused by: org.snomed.snowstorm.core.data.services.ServiceException: Failed to create MRCM configuration directory /opt/snowstorm/resources/mrcm/MAIN
at org.snomed.snowstorm.mrcm.MRCMLoader.loadFromFiles(MRCMLoader.java:40) ~[classes!/:2.1.1-SNAPSHOT]
at org.snomed.snowstorm.mrcm.MRCMService.loadFromFiles(MRCMService.java:46) ~[classes!/:2.1.1-SNAPSHOT]
at org.snomed.snowstorm.App.run(App.java:61) [classes!/:2.1.1-SNAPSHOT]
at org.springframework.boot.SpringApplication.callRunner(SpringApplication.java:788) [spring-boot-2.0.1.RELEASE.jar!/:2.0.1.RELEASE]
... 13 common frames omitted
2018-11-22 06:17:48.534 INFO 1773 --- [ main] ConfigServletWebServerApplicationContext : Closing org.springframework.boot.web.servlet.context.AnnotationConfigServletWebServerApplicationContext@5a42bbf4: startup date [Thu Nov 22 06:17:35 UTC 2018]; root of context hierarchy
2018-11-22 06:17:48.536 INFO 1773 --- [ main] o.s.c.support.DefaultLifecycleProcessor : Stopping beans in phase 2147483647
2018-11-22 06:17:49.085 INFO 1773 --- [ main] o.s.j.e.a.AnnotationMBeanExporter : Unregistering JMX-exposed beans on shutdown
2018-11-22 06:17:49.106 INFO 1773 --- [ main] o.a.activemq.broker.TransportConnector : Connector vm://localhost stopped
2018-11-22 06:17:49.106 INFO 1773 --- [ main] o.apache.activemq.broker.BrokerService : Apache ActiveMQ 5.15.3 (localhost, ID:ip-10-0-13-236-46759-1542867467744-0:1) is shutting down
2018-11-22 06:17:49.117 INFO 1773 --- [ main] o.apache.activemq.broker.BrokerService : Apache ActiveMQ 5.15.3 (localhost, ID:ip-10-0-13-236-46759-1542867467744-0:1) uptime 1.450 seconds
2018-11-22 06:17:49.117 INFO 1773 --- [ main] o.apache.activemq.broker.BrokerService : Apache ActiveMQ 5.15.3 (localhost, ID:ip-10-0-13-236-46759-1542867467744-0:1) is shutdown
____ _
__/\__ / ___| _ __ _____ _____| |_ ___ _ __ _ __ ___
\ / \___ \| '_ \ / _ \ \ /\ / / __| __/ _ \| '__| '_ ` _ \
/_ _\ ___) | | | | (_) \ V V /\__ \ || (_) | | | | | | | |
\/ |____/|_| |_|\___/ \_/\_/ |___/\__\___/|_| |_| |_| |_|
===============================================================
:: Snowstorm, SNOMED CT Terminology Server :: (v2.1.1-SNAPSHOT)
2018-11-22 06:18:12.238 INFO 1862 --- [ main] org.snomed.snowstorm.App : Starting App v2.1.1-SNAPSHOT on ip-10-0-13-236 with PID 1862 (/home/rda/snowstorm-2.1.1-SNAPSHOT.jar started by root in /home/rda)
2018-11-22 06:18:12.243 INFO 1862 --- [ main] org.snomed.snowstorm.App : No active profile set, falling back to default profiles: default
2018-11-22 06:18:12.371 INFO 1862 --- [ main] ConfigServletWebServerApplicationContext : Refreshing org.springframework.boot.web.servlet.context.AnnotationConfigServletWebServerApplicationContext@6956de9: startup date [Thu Nov 22 06:18:12 UTC 2018]; root of context hierarchy
2018-11-22 06:18:13.618 INFO 1862 --- [ main] o.s.b.f.s.DefaultListableBeanFactory : Overriding bean definition for bean 'domainEntityConfiguration' with a different definition: replacing [Generic bean: class [org.snomed.snowstorm.core.data.services.DomainEntityConfiguration]; scope=singleton; abstract=false; lazyInit=false; autowireMode=0; dependencyCheck=0; autowireCandidate=true; primary=false; factoryBeanName=null; factoryMethodName=null; initMethodName=null; destroyMethodName=null; defined in URL [jar:file:/home/rda/snowstorm-2.1.1-SNAPSHOT.jar!/BOOT-INF/classes!/org/snomed/snowstorm/core/data/services/DomainEntityConfiguration.class]] with [Root bean: class [null]; scope=; abstract=false; lazyInit=false; autowireMode=3; dependencyCheck=0; autowireCandidate=true; primary=false; factoryBeanName=app; factoryMethodName=domainEntityConfiguration; initMethodName=null; destroyMethodName=(inferred); defined in org.snomed.snowstorm.App]
2018-11-22 06:18:14.259 INFO 1862 --- [ main] f.a.AutowiredAnnotationBeanPostProcessor : JSR-330 'javax.inject.Inject' annotation found and supported for autowiring
2018-11-22 06:18:14.810 INFO 1862 --- [ main] o.s.b.w.embedded.tomcat.TomcatWebServer : Tomcat initialized with port(s): 8080 (http)
2018-11-22 06:18:14.855 INFO 1862 --- [ main] o.apache.catalina.core.StandardService : Starting service [Tomcat]
2018-11-22 06:18:14.856 INFO 1862 --- [ main] org.apache.catalina.core.StandardEngine : Starting Servlet Engine: Apache Tomcat/8.5.29
2018-11-22 06:18:14.871 INFO 1862 --- [ost-startStop-1] o.a.catalina.core.AprLifecycleListener : The APR based Apache Tomcat Native library which allows optimal performance in production environments was not found on the java.library.path: [/usr/java/packages/lib/amd64:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib]
2018-11-22 06:18:15.059 INFO 1862 --- [ost-startStop-1] o.a.c.c.C.[Tomcat].[localhost].[/] : Initializing Spring embedded WebApplicationContext
2018-11-22 06:18:15.059 INFO 1862 --- [ost-startStop-1] o.s.web.context.ContextLoader : Root WebApplicationContext: initialization completed in 2695 ms
2018-11-22 06:18:17.319 INFO 1862 --- [heManagerDaemon] o.s.s.c.d.s.i.IdentifierCacheManager : Identifier cache manager polling commencing with 10 second period.
2018-11-22 06:18:17.321 INFO 1862 --- [heManagerDaemon] o.s.s.c.d.s.i.IdentifierCacheManager : Topping up IdCache(0 - 02) by 4000
2018-11-22 06:18:17.346 INFO 1862 --- [heManagerDaemon] o.s.s.c.d.s.i.IdentifierCacheManager : Top up of IdCache(0 - 02) by 4000 complete
2018-11-22 06:18:17.347 INFO 1862 --- [heManagerDaemon] o.s.s.c.d.s.i.IdentifierCacheManager : Topping up IdCache(0 - 01) by 2000
2018-11-22 06:18:17.354 INFO 1862 --- [heManagerDaemon] o.s.s.c.d.s.i.IdentifierCacheManager : Top up of IdCache(0 - 01) by 2000 complete
2018-11-22 06:18:17.354 INFO 1862 --- [heManagerDaemon] o.s.s.c.d.s.i.IdentifierCacheManager : Topping up IdCache(0 - 00) by 1000
2018-11-22 06:18:17.357 INFO 1862 --- [heManagerDaemon] o.s.s.c.d.s.i.IdentifierCacheManager : Top up of IdCache(0 - 00) by 1000 complete
2018-11-22 06:18:17.747 INFO 1862 --- [ost-startStop-1] ca.uhn.fhir.util.VersionUtil : HAPI FHIR version is: 3.2.0
2018-11-22 06:18:17.940 INFO 1862 --- [ost-startStop-1] o.s.b.w.servlet.FilterRegistrationBean : Mapping filter: 'characterEncodingFilter' to: [/*]
2018-11-22 06:18:17.941 INFO 1862 --- [ost-startStop-1] o.s.b.w.servlet.FilterRegistrationBean : Mapping filter: 'hiddenHttpMethodFilter' to: [/*]
2018-11-22 06:18:17.941 INFO 1862 --- [ost-startStop-1] o.s.b.w.servlet.FilterRegistrationBean : Mapping filter: 'httpPutFormContentFilter' to: [/*]
2018-11-22 06:18:17.941 INFO 1862 --- [ost-startStop-1] o.s.b.w.servlet.FilterRegistrationBean : Mapping filter: 'requestContextFilter' to: [/*]
2018-11-22 06:18:17.941 INFO 1862 --- [ost-startStop-1] .s.DelegatingFilterProxyRegistrationBean : Mapping filter: 'springSecurityFilterChain' to: [/*]
2018-11-22 06:18:17.941 INFO 1862 --- [ost-startStop-1] o.s.b.w.servlet.FilterRegistrationBean : Mapping filter: 'requestHeaderAuthenticationDecorator' to: [/*]
2018-11-22 06:18:17.941 INFO 1862 --- [ost-startStop-1] o.s.b.w.servlet.FilterRegistrationBean : Mapping filter: 'requestHeaderAuthenticationDecoratorWithRequiredRole' to: [/*]
2018-11-22 06:18:17.942 INFO 1862 --- [ost-startStop-1] o.s.b.w.servlet.FilterRegistrationBean : Mapping filter: 'branchPathUriRewriteFilter' to: [/*]
2018-11-22 06:18:17.942 INFO 1862 --- [ost-startStop-1] o.s.b.w.servlet.ServletRegistrationBean : Servlet hapiRestfulServlet mapped to [/fhir/*]
2018-11-22 06:18:17.943 INFO 1862 --- [ost-startStop-1] o.s.b.w.servlet.ServletRegistrationBean : Servlet dispatcherServlet mapped to [/]
2018-11-22 06:18:18.314 ERROR 1862 --- [ main] org.ihtsdo.drools.RuleExecutor : Rules directory does not exist: /opt/snowstorm/snomed-drools-rules
2018-11-22 06:18:18.983 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/branches],methods=[GET],produces=[application/json]}" onto public java.util.List<io.kaicode.elasticvc.domain.Branch> org.snomed.snowstorm.rest.BranchController.retrieveAllBranches()
2018-11-22 06:18:18.985 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/branches],methods=[POST],produces=[application/json]}" onto public org.snomed.snowstorm.rest.pojo.BranchPojo org.snomed.snowstorm.rest.BranchController.createBranch(org.snomed.snowstorm.rest.pojo.CreateBranchRequest)
2018-11-22 06:18:18.986 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/branches/{path}],methods=[PUT],produces=[application/json]}" onto public org.snomed.snowstorm.rest.pojo.BranchPojo org.snomed.snowstorm.rest.BranchController.updateBranch(java.lang.String,org.snomed.snowstorm.rest.pojo.UpdateBranchRequest) throws com.fasterxml.jackson.core.JsonProcessingException
2018-11-22 06:18:18.987 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/branches/{path}],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.rest.pojo.BranchPojo org.snomed.snowstorm.rest.BranchController.retrieveBranch(java.lang.String,boolean)
2018-11-22 06:18:18.987 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/branches/{path}/actions/unlock],methods=[POST],produces=[application/json]}" onto public void org.snomed.snowstorm.rest.BranchController.unlockBranch(java.lang.String)
2018-11-22 06:18:18.988 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/reviews],methods=[POST],produces=[application/json]}" onto public org.springframework.http.ResponseEntity<java.lang.Void> org.snomed.snowstorm.rest.BranchController.createBranchReview(org.snomed.snowstorm.rest.pojo.CreateReviewRequest)
2018-11-22 06:18:18.988 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/reviews/{id}],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.core.data.domain.review.BranchReview org.snomed.snowstorm.rest.BranchController.getBranchReview(java.lang.String)
2018-11-22 06:18:18.989 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/reviews/{id}/concept-changes],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.core.data.domain.review.BranchReviewConceptChanges org.snomed.snowstorm.rest.BranchController.getBranchReviewConceptChanges(java.lang.String)
2018-11-22 06:18:18.989 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/merge-reviews],methods=[POST],produces=[application/json]}" onto public org.springframework.http.ResponseEntity<java.lang.Void> org.snomed.snowstorm.rest.BranchController.createMergeReview(org.snomed.snowstorm.rest.pojo.CreateReviewRequest)
2018-11-22 06:18:18.990 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/merge-reviews/{id}],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.core.data.domain.review.MergeReview org.snomed.snowstorm.rest.BranchController.getMergeReview(java.lang.String)
2018-11-22 06:18:18.990 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/merge-reviews/{id}/details],methods=[GET],produces=[application/json]}" onto public java.util.Collection<org.snomed.snowstorm.core.data.domain.review.MergeReviewConceptVersions> org.snomed.snowstorm.rest.BranchController.getMergeReviewConflictingConcepts(java.lang.String,java.lang.String)
2018-11-22 06:18:18.991 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/merge-reviews/{id}/{conceptId}],methods=[POST],produces=[application/json]}" onto public void org.snomed.snowstorm.rest.BranchController.getMergeReviewConflictingConcepts(java.lang.String,java.lang.String,org.snomed.snowstorm.core.data.domain.Concept)
2018-11-22 06:18:18.991 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/merge-reviews/{id}/apply],methods=[POST],produces=[application/json]}" onto public void org.snomed.snowstorm.rest.BranchController.applyMergeReview(java.lang.String) throws org.snomed.snowstorm.core.data.services.ServiceException
2018-11-22 06:18:18.992 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/merges],methods=[POST],produces=[application/json]}" onto public org.springframework.http.ResponseEntity<java.lang.Void> org.snomed.snowstorm.rest.BranchController.mergeBranch(org.snomed.snowstorm.rest.pojo.MergeRequest)
2018-11-22 06:18:18.992 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/merges/{mergeId}],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.core.data.domain.BranchMergeJob org.snomed.snowstorm.rest.BranchController.retrieveMerge(java.lang.String)
2018-11-22 06:18:18.992 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/integrity-check],methods=[POST],produces=[application/json]}" onto public org.snomed.snowstorm.core.data.services.pojo.IntegrityIssueReport org.snomed.snowstorm.rest.BranchController.integrityCheck(java.lang.String)
2018-11-22 06:18:18.993 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/integrity-check-full],methods=[POST],produces=[application/json]}" onto public org.snomed.snowstorm.core.data.services.pojo.IntegrityIssueReport org.snomed.snowstorm.rest.BranchController.fullIntegrityCheck(java.lang.String)
2018-11-22 06:18:18.995 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/imports],methods=[POST],produces=[application/json]}" onto public org.springframework.http.ResponseEntity<java.lang.Void> org.snomed.snowstorm.rest.ImportController.createImportJob(org.snomed.snowstorm.rest.pojo.ImportCreationRequest)
2018-11-22 06:18:18.996 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/imports/release-patch],methods=[POST],produces=[application/json]}" onto public org.springframework.http.ResponseEntity<java.lang.Void> org.snomed.snowstorm.rest.ImportController.createReleasePatchImportJob(org.snomed.snowstorm.rest.pojo.ImportPatchCreationRequest)
2018-11-22 06:18:18.996 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/imports/{importId}],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.core.rf2.rf2import.ImportJob org.snomed.snowstorm.rest.ImportController.getImportJob(java.lang.String)
2018-11-22 06:18:18.997 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/imports/{importId}/archive],methods=[POST],consumes=[multipart/form-data],produces=[application/json]}" onto public void org.snomed.snowstorm.rest.ImportController.uploadImportRf2Archive(java.lang.String,org.springframework.web.multipart.MultipartFile)
2018-11-22 06:18:18.998 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/exports],methods=[POST],produces=[application/json]}" onto public org.springframework.http.ResponseEntity<java.lang.Void> org.snomed.snowstorm.rest.ExportController.createExportJob(org.snomed.snowstorm.core.data.domain.jobs.ExportConfiguration)
2018-11-22 06:18:18.998 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/exports/{exportId}],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.core.data.domain.jobs.ExportConfiguration org.snomed.snowstorm.rest.ExportController.getExportJob(java.lang.String)
2018-11-22 06:18:18.999 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/exports/{exportId}/archive],methods=[GET],produces=[application/zip]}" onto public void org.snomed.snowstorm.rest.ExportController.downloadRf2Archive(java.lang.String,javax.servlet.http.HttpServletResponse) throws java.io.IOException
2018-11-22 06:18:19.000 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/codesystems],methods=[POST],produces=[application/json]}" onto public org.springframework.http.ResponseEntity<java.lang.Void> org.snomed.snowstorm.rest.CodeSystemController.createCodeSystem(org.snomed.snowstorm.core.data.domain.CodeSystem)
2018-11-22 06:18:19.001 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/codesystems],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.rest.pojo.ItemsPage<org.snomed.snowstorm.core.data.domain.CodeSystem> org.snomed.snowstorm.rest.CodeSystemController.findAll()
2018-11-22 06:18:19.001 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/codesystems/{shortName}],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.core.data.domain.CodeSystem org.snomed.snowstorm.rest.CodeSystemController.findCodeSystem(java.lang.String)
2018-11-22 06:18:19.001 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/codesystems/{shortName}/versions],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.rest.pojo.ItemsPage<org.snomed.snowstorm.core.data.domain.CodeSystemVersion> org.snomed.snowstorm.rest.CodeSystemController.findAllVersions(java.lang.String)
2018-11-22 06:18:19.002 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/codesystems/{shortName}/versions],methods=[POST],produces=[application/json]}" onto public org.springframework.http.ResponseEntity<java.lang.Void> org.snomed.snowstorm.rest.CodeSystemController.createVersion(java.lang.String,org.snomed.snowstorm.rest.pojo.CreateCodeSystemVersionRequest)
2018-11-22 06:18:19.002 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/codesystems/{shortName}/migrate],methods=[POST],produces=[application/json]}" onto public void org.snomed.snowstorm.rest.CodeSystemController.migrateCodeSystem(java.lang.String,org.snomed.snowstorm.rest.pojo.CodeSystemMigrationRequest)
2018-11-22 06:18:19.003 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/version],methods=[GET]}" onto public org.snomed.snowstorm.rest.pojo.BuildVersion org.snomed.snowstorm.rest.VersionController.getBuildInformation()
2018-11-22 06:18:19.007 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/concepts/{conceptId}],methods=[GET],produces=[application/json || text/csv]}" onto public org.snomed.snowstorm.core.data.domain.ConceptMini org.snomed.snowstorm.rest.ConceptController.findConcept(java.lang.String,java.lang.String,java.lang.String)
2018-11-22 06:18:19.007 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/browser/{branch}/concepts/bulk-load],methods=[POST],produces=[application/json]}" onto public java.util.Collection<org.snomed.snowstorm.core.data.domain.Concept> org.snomed.snowstorm.rest.ConceptController.getBrowserConcepts(java.lang.String,org.snomed.snowstorm.rest.pojo.ConceptIdsPojo,java.lang.String)
2018-11-22 06:18:19.008 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/browser/{branch}/concepts],methods=[GET],produces=[application/json]}" onto public org.springframework.data.domain.Page<? extends org.snomed.snowstorm.core.data.domain.ConceptView> org.snomed.snowstorm.rest.ConceptController.getBrowserConcepts(java.lang.String,int,int,java.lang.String)
2018-11-22 06:18:19.008 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/browser/{branch}/concepts/{conceptId}],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.core.data.domain.ConceptView org.snomed.snowstorm.rest.ConceptController.findBrowserConcept(java.lang.String,java.lang.String,java.lang.String)
2018-11-22 06:18:19.009 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/concepts/{conceptId}/descriptions],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.rest.pojo.ConceptDescriptionsResult org.snomed.snowstorm.rest.ConceptController.findConceptDescriptions(java.lang.String,java.lang.String,java.lang.String)
2018-11-22 06:18:19.009 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/concepts/{conceptId}/descendants],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.rest.pojo.ItemsPage<org.snomed.snowstorm.core.data.domain.ConceptMini> org.snomed.snowstorm.rest.ConceptController.findConceptDescendants(java.lang.String,java.lang.String,boolean,int,int,java.lang.String)
2018-11-22 06:18:19.010 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/concepts/{conceptId}/inbound-relationships],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.rest.pojo.InboundRelationshipsResult org.snomed.snowstorm.rest.ConceptController.findConceptInboundRelationships(java.lang.String,java.lang.String)
2018-11-22 06:18:19.010 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/browser/{branch}/concepts/{conceptId}],methods=[PUT],produces=[application/json]}" onto public org.snomed.snowstorm.core.data.domain.ConceptView org.snomed.snowstorm.rest.ConceptController.updateConcept(java.lang.String,java.lang.String,org.snomed.snowstorm.core.data.domain.ConceptView,java.lang.String) throws org.snomed.snowstorm.core.data.services.ServiceException
2018-11-22 06:18:19.010 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/browser/{branch}/concepts],methods=[POST],produces=[application/json]}" onto public org.snomed.snowstorm.core.data.domain.ConceptView org.snomed.snowstorm.rest.ConceptController.createConcept(java.lang.String,org.snomed.snowstorm.core.data.domain.ConceptView,java.lang.String) throws org.snomed.snowstorm.core.data.services.ServiceException
2018-11-22 06:18:19.011 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/concepts/{conceptId}],methods=[DELETE],produces=[application/json]}" onto public void org.snomed.snowstorm.rest.ConceptController.deleteConcept(java.lang.String,java.lang.String)
2018-11-22 06:18:19.011 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/browser/{branch}/concepts/bulk],methods=[POST],produces=[application/json]}" onto public org.springframework.http.ResponseEntity org.snomed.snowstorm.rest.ConceptController.createConceptBulkChange(java.lang.String,java.util.List<org.snomed.snowstorm.core.data.domain.ConceptView>,org.springframework.web.util.UriComponentsBuilder)
2018-11-22 06:18:19.012 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/concepts],methods=[GET],produces=[application/json || text/csv]}" onto public org.snomed.snowstorm.rest.pojo.ItemsPage<org.snomed.snowstorm.core.data.domain.ConceptMini> org.snomed.snowstorm.rest.ConceptController.findConcepts(java.lang.String,java.lang.Boolean,java.lang.String,java.lang.String,java.lang.String,java.lang.String,java.lang.String,java.util.Set<java.lang.String>,int,int,java.lang.String)
2018-11-22 06:18:19.012 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/browser/{branch}/concepts/bulk/{bulkChangeId}],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.core.data.services.pojo.AsyncConceptChangeBatch org.snomed.snowstorm.rest.ConceptController.getConceptBulkChange(java.lang.String,java.lang.String)
2018-11-22 06:18:19.012 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/browser/{branch}/concepts/{conceptId}/children],methods=[GET],produces=[application/json]}" onto public java.util.Collection<org.snomed.snowstorm.core.data.domain.ConceptMini> org.snomed.snowstorm.rest.ConceptController.findConceptChildren(java.lang.String,java.lang.String,org.snomed.snowstorm.core.data.domain.Relationship$CharacteristicType,java.lang.String)
2018-11-22 06:18:19.013 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/browser/{branch}/concepts/{conceptId}/parents],methods=[GET],produces=[application/json]}" onto public java.util.Collection<org.snomed.snowstorm.core.data.domain.ConceptMini> org.snomed.snowstorm.rest.ConceptController.findConceptParents(java.lang.String,java.lang.String,org.snomed.snowstorm.core.data.domain.Relationship$CharacteristicType,java.lang.String)
2018-11-22 06:18:19.013 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/browser/{branch}/concepts/{conceptId}/ancestors],methods=[GET],produces=[application/json]}" onto public java.util.Collection<org.snomed.snowstorm.core.data.domain.ConceptMini> org.snomed.snowstorm.rest.ConceptController.findConceptAncestors(java.lang.String,java.lang.String,org.snomed.snowstorm.core.data.domain.Relationship$CharacteristicType,java.lang.String)
2018-11-22 06:18:19.014 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/rebuild/{branch}],methods=[POST],produces=[application/json]}" onto public void org.snomed.snowstorm.rest.ConceptController.rebuildBranchTransitiveClosure(java.lang.String) throws org.snomed.otf.owltoolkit.conversion.ConversionException
2018-11-22 06:18:19.014 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/concepts/{conceptId}/authoring-form],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.core.data.domain.expression.Expression org.snomed.snowstorm.rest.ConceptController.getConceptAuthoringForm(java.lang.String,java.lang.String,java.lang.String)
2018-11-22 06:18:19.015 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/concepts/search],methods=[POST],produces=[application/json || text/csv]}" onto public org.snomed.snowstorm.rest.pojo.ItemsPage<org.snomed.snowstorm.core.data.domain.ConceptMini> org.snomed.snowstorm.rest.ConceptController.search(java.lang.String,org.snomed.snowstorm.rest.pojo.ConceptSearchRequest,java.lang.String)
2018-11-22 06:18:19.016 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/relationships],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.rest.pojo.ItemsPage<org.snomed.snowstorm.core.data.domain.Relationship> org.snomed.snowstorm.rest.RelationshipController.findRelationships(java.lang.String,java.lang.Boolean,java.lang.String,java.lang.String,java.lang.String,java.lang.String,java.lang.String,org.snomed.snowstorm.rest.RelationshipController$RelationshipCharacteristicType,java.lang.Integer,int,int,java.lang.String)
2018-11-22 06:18:19.016 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/relationships/{relationshipId}],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.core.data.domain.Relationship org.snomed.snowstorm.rest.RelationshipController.fetchRelationship(java.lang.String,java.lang.String,java.lang.String)
2018-11-22 06:18:19.017 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/mrcm/reload],methods=[POST],consumes=[multipart/form-data],produces=[application/json]}" onto public void org.snomed.snowstorm.rest.MRCMController.reloadMrcm() throws org.snomed.snowstorm.core.data.services.ServiceException
2018-11-22 06:18:19.017 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/mrcm/{path}/domain-attributes],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.rest.pojo.ItemsPage<org.snomed.snowstorm.core.data.domain.ConceptMini> org.snomed.snowstorm.rest.MRCMController.retrieveDomainAttributes(java.lang.String,java.util.Set<java.lang.Long>,java.lang.String)
2018-11-22 06:18:19.018 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/mrcm/{path}/attribute-values/{attributeId}],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.rest.pojo.ItemsPage<org.snomed.snowstorm.core.data.domain.ConceptMini> org.snomed.snowstorm.rest.MRCMController.retrieveAttributeValues(java.lang.String,java.lang.String,java.lang.String,java.lang.String)
2018-11-22 06:18:19.019 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/members],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.rest.pojo.ItemsPage<org.snomed.snowstorm.core.data.domain.ReferenceSetMember> org.snomed.snowstorm.rest.ReferenceSetMemberController.findRefsetMembers(java.lang.String,java.lang.String,java.lang.String,java.lang.Boolean,java.lang.String,java.lang.String,int,int,java.lang.String)
2018-11-22 06:18:19.019 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/members/{uuid}],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.core.data.domain.ReferenceSetMember org.snomed.snowstorm.rest.ReferenceSetMemberController.fetchMember(java.lang.String,java.lang.String,java.lang.String)
2018-11-22 06:18:19.021 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/members/{uuid}],methods=[DELETE],produces=[application/json]}" onto public void org.snomed.snowstorm.rest.ReferenceSetMemberController.deleteMember(java.lang.String,java.lang.String)
2018-11-22 06:18:19.021 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/browser/{branch}/validate/concept],methods=[POST],produces=[application/json]}" onto public java.util.List<org.ihtsdo.drools.response.InvalidContent> org.snomed.snowstorm.rest.ConceptValidationController.validateConcept(java.lang.String,org.snomed.snowstorm.core.data.domain.Concept) throws org.snomed.snowstorm.core.data.services.ServiceException
2018-11-22 06:18:19.022 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/browser/{branch}/validate/concepts],methods=[POST],produces=[application/json]}" onto public java.util.List<org.ihtsdo.drools.response.InvalidContent> org.snomed.snowstorm.rest.ConceptValidationController.validateConcepts(java.lang.String,java.util.Set<org.snomed.snowstorm.core.data.domain.Concept>) throws org.snomed.snowstorm.core.data.services.ServiceException
2018-11-22 06:18:19.023 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/authoring-mirror/activities],methods=[POST],produces=[application/json]}" onto public void org.snomed.snowstorm.rest.AuthoringMirrorController.mirrorAuthoring(org.springframework.web.multipart.MultipartFile) throws java.io.IOException,org.snomed.snowstorm.core.data.services.ServiceException
2018-11-22 06:18:19.024 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/classifications/{classificationId}],methods=[PUT],produces=[application/json]}" onto public void org.snomed.snowstorm.rest.ClassificationController.updateClassification(java.lang.String,java.lang.String,org.snomed.snowstorm.rest.pojo.ClassificationUpdateRequest)
2018-11-22 06:18:19.024 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/classifications],methods=[POST],produces=[application/json]}" onto public org.springframework.http.ResponseEntity org.snomed.snowstorm.rest.ClassificationController.createClassification(java.lang.String,java.lang.String,org.springframework.web.util.UriComponentsBuilder) throws org.snomed.snowstorm.core.data.services.ServiceException
2018-11-22 06:18:19.025 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/classifications],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.rest.pojo.ItemsPage<org.snomed.snowstorm.core.data.domain.classification.Classification> org.snomed.snowstorm.rest.ClassificationController.findClassifications(java.lang.String)
2018-11-22 06:18:19.025 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/classifications/{classificationId}],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.core.data.domain.classification.Classification org.snomed.snowstorm.rest.ClassificationController.findClassification(java.lang.String,java.lang.String)
2018-11-22 06:18:19.026 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/classifications/{classificationId}/relationship-changes],methods=[GET],produces=[application/json || text/csv]}" onto public org.snomed.snowstorm.rest.pojo.ItemsPage<org.snomed.snowstorm.core.data.domain.classification.RelationshipChange> org.snomed.snowstorm.rest.ClassificationController.getRelationshipChanges(java.lang.String,java.lang.String,int,int,java.lang.String)
2018-11-22 06:18:19.026 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/classifications/{classificationId}/equivalent-concepts],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.rest.pojo.ItemsPage<org.snomed.snowstorm.core.data.services.classification.pojo.EquivalentConceptsResponse> org.snomed.snowstorm.rest.ClassificationController.getEquivalentConcepts(java.lang.String,java.lang.String,int,int,java.lang.String)
2018-11-22 06:18:19.026 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/classifications/{classificationId}/concept-preview/{conceptId}],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.core.data.domain.ConceptView org.snomed.snowstorm.rest.ClassificationController.getConceptPreview(java.lang.String,java.lang.String,java.lang.String,java.lang.String)
2018-11-22 06:18:19.027 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/],methods=[GET]}" onto public void org.snomed.snowstorm.rest.RootController.getRoot(javax.servlet.http.HttpServletResponse) throws java.io.IOException
2018-11-22 06:18:19.028 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/descriptions],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.rest.pojo.ItemsPage<org.snomed.snowstorm.core.data.domain.Description> org.snomed.snowstorm.rest.DescriptionController.findDescriptions(java.lang.String,java.lang.String,int,int,java.lang.String)
2018-11-22 06:18:19.028 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/browser/{branch}/descriptions],methods=[GET],produces=[application/json]}" onto public org.springframework.data.domain.Page<org.snomed.snowstorm.rest.pojo.BrowserDescriptionSearchResult> org.snomed.snowstorm.rest.DescriptionController.findBrowserDescriptions(java.lang.String,java.lang.String,java.lang.Boolean,java.lang.String,int,int,java.lang.String)
2018-11-22 06:18:19.029 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/descriptions/{descriptionId}],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.core.data.domain.Description org.snomed.snowstorm.rest.DescriptionController.fetchDescription(java.lang.String,java.lang.String)
2018-11-22 06:18:19.030 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/v2/api-docs],methods=[GET],produces=[application/json || application/hal+json]}" onto public org.springframework.http.ResponseEntity<springfox.documentation.spring.web.json.Json> springfox.documentation.swagger2.web.Swagger2Controller.getDocumentation(java.lang.String,javax.servlet.http.HttpServletRequest)
2018-11-22 06:18:19.033 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/swagger-resources]}" onto org.springframework.http.ResponseEntity<java.util.List<springfox.documentation.swagger.web.SwaggerResource>> springfox.documentation.swagger.web.ApiResourceController.swaggerResources()
2018-11-22 06:18:19.035 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/swagger-resources/configuration/ui]}" onto org.springframework.http.ResponseEntity<springfox.documentation.swagger.web.UiConfiguration> springfox.documentation.swagger.web.ApiResourceController.uiConfiguration()
2018-11-22 06:18:19.036 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/swagger-resources/configuration/security]}" onto org.springframework.http.ResponseEntity<springfox.documentation.swagger.web.SecurityConfiguration> springfox.documentation.swagger.web.ApiResourceController.securityConfiguration()
2018-11-22 06:18:19.040 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/error],produces=[text/html]}" onto public org.springframework.web.servlet.ModelAndView org.springframework.boot.autoconfigure.web.servlet.error.BasicErrorController.errorHtml(javax.servlet.http.HttpServletRequest,javax.servlet.http.HttpServletResponse)
2018-11-22 06:18:19.041 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/error]}" onto public org.springframework.http.ResponseEntity<java.util.Map<java.lang.String, java.lang.Object>> org.springframework.boot.autoconfigure.web.servlet.error.BasicErrorController.error(javax.servlet.http.HttpServletRequest)
2018-11-22 06:18:19.567 INFO 1862 --- [ main] o.s.s.web.DefaultSecurityFilterChain : Creating filter chain: org.springframework.security.web.util.matcher.AnyRequestMatcher@1, [org.springframework.security.web.context.request.async.WebAsyncManagerIntegrationFilter@79defdc, org.springframework.security.web.context.SecurityContextPersistenceFilter@2f01783a, org.springframework.security.web.header.HeaderWriterFilter@74287ea3, org.springframework.security.web.authentication.logout.LogoutFilter@16612a51, org.springframework.security.web.savedrequest.RequestCacheAwareFilter@41488b16, org.springframework.security.web.servletapi.SecurityContextHolderAwareRequestFilter@7ac296f6, org.springframework.security.web.authentication.AnonymousAuthenticationFilter@18317edc, org.springframework.security.web.session.SessionManagementFilter@2bdd8394, org.springframework.security.web.access.ExceptionTranslationFilter@4b8729ff]
2018-11-22 06:18:19.737 INFO 1862 --- [ main] o.s.w.s.handler.SimpleUrlHandlerMapping : Mapped URL path [/**/favicon.ico] onto handler of type [class org.springframework.web.servlet.resource.ResourceHttpRequestHandler]
2018-11-22 06:18:19.982 INFO 1862 --- [ main] s.w.s.m.m.a.RequestMappingHandlerAdapter : Looking for @ControllerAdvice: org.springframework.boot.web.servlet.context.AnnotationConfigServletWebServerApplicationContext@6956de9: startup date [Thu Nov 22 06:18:12 UTC 2018]; root of context hierarchy
2018-11-22 06:18:20.397 INFO 1862 --- [ main] o.s.w.s.handler.SimpleUrlHandlerMapping : Mapped URL path [/webjars/**] onto handler of type [class org.springframework.web.servlet.resource.ResourceHttpRequestHandler]
2018-11-22 06:18:20.397 INFO 1862 --- [ main] o.s.w.s.handler.SimpleUrlHandlerMapping : Mapped URL path [/**] onto handler of type [class org.springframework.web.servlet.resource.ResourceHttpRequestHandler]
2018-11-22 06:18:20.424 INFO 1862 --- [ main] .m.m.a.ExceptionHandlerExceptionResolver : Detected @ExceptionHandler methods in restControllerAdvice
2018-11-22 06:18:20.851 INFO 1862 --- [ main] o.s.j.e.a.AnnotationMBeanExporter : Registering beans for JMX exposure on startup
2018-11-22 06:18:20.863 INFO 1862 --- [ main] o.s.c.support.DefaultLifecycleProcessor : Starting beans in phase 2147483647
2018-11-22 06:18:20.863 INFO 1862 --- [ main] d.s.w.p.DocumentationPluginsBootstrapper : Context refreshed
2018-11-22 06:18:20.878 INFO 1862 --- [ main] d.s.w.p.DocumentationPluginsBootstrapper : Found 1 custom documentation plugin(s)
2018-11-22 06:18:20.892 INFO 1862 --- [ main] s.d.s.w.s.ApiListingReferenceScanner : Scanning for api listing references
2018-11-22 06:18:21.709 INFO 1862 --- [ main] o.apache.activemq.broker.BrokerService : Using Persistence Adapter: MemoryPersistenceAdapter
2018-11-22 06:18:21.752 INFO 1862 --- [ JMX connector] o.a.a.broker.jmx.ManagementContext : JMX consoles can connect to service:jmx:rmi:///jndi/rmi://localhost:1099/jmxrmi
2018-11-22 06:18:21.878 INFO 1862 --- [ main] o.apache.activemq.broker.BrokerService : Apache ActiveMQ 5.15.3 (localhost, ID:ip-10-0-13-236-43929-1542867501734-0:1) is starting
2018-11-22 06:18:21.887 INFO 1862 --- [ main] o.apache.activemq.broker.BrokerService : Apache ActiveMQ 5.15.3 (localhost, ID:ip-10-0-13-236-43929-1542867501734-0:1) started
2018-11-22 06:18:21.887 INFO 1862 --- [ main] o.apache.activemq.broker.BrokerService : For help or more information please see: http://activemq.apache.org
2018-11-22 06:18:21.937 INFO 1862 --- [ main] o.a.activemq.broker.TransportConnector : Connector vm://localhost started
2018-11-22 06:18:22.064 INFO 1862 --- [ main] o.s.b.w.embedded.tomcat.TomcatWebServer : Tomcat started on port(s): 8080 (http) with context path ''
2018-11-22 06:18:22.076 INFO 1862 --- [ main] org.snomed.snowstorm.App : Started App in 10.463 seconds (JVM running for 10.965)
2018-11-22 06:18:22.079 INFO 1862 --- [ main] i.k.elasticvc.api.ComponentService : Initialising indices
2018-11-22 06:18:22.219 INFO 1862 --- [ main] org.snomed.snowstorm.mrcm.MRCMLoader : Loading MRCM from XML document.
2018-11-22 06:18:22.352 INFO 1862 --- [ main] org.snomed.snowstorm.mrcm.MRCMLoader : MRCM loaded with 16 domains and 100 attributes.
2018-11-22 06:18:22.467 INFO 1862 --- [ main] o.s.s.c.d.s.ReferenceSetMemberService : Setting up reference set types: [MRCMAttributeRange|723592007, ICD-9-CMEquivalenceComplexMap|447563008, OWLOntology|762103008, SimpleMap|900000000000496009, AssociationReference|900000000000521006, MRCMDomain|723589008, MRCMAttributeDomain|723604009, AttributeValue|900000000000480006, ICD-10ComplexMap|447562003, OWLAxiom|733073007, Language|900000000000506000, MRCMModuleScope|723563008, Annotation|900000000000516008]
2018-11-22 06:18:22.571 INFO 1862 --- [ main] io.kaicode.elasticvc.api.BranchService : Open commit on MAIN at 1542867502571
2018-11-22 06:18:22.575 INFO 1862 --- [ main] i.k.elasticvc.api.ComponentService : Saving batch of 13 ReferenceSetTypes
2018-11-22 06:18:22.841 INFO 1862 --- [ main] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: started
2018-11-22 06:18:22.841 INFO 1862 --- [ main] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: get branch criteria took 0.0 seconds
2018-11-22 06:18:22.857 INFO 1862 --- [ main] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed is-a relationships. took 0.016 seconds
2018-11-22 06:18:22.875 INFO 1862 --- [ main] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed axiom is-a fragments. took 0.018 seconds
2018-11-22 06:18:22.884 INFO 1862 --- [ main] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: started
2018-11-22 06:18:22.884 INFO 1862 --- [ main] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: get branch criteria took 0.0 seconds
2018-11-22 06:18:22.890 INFO 1862 --- [ main] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect changed is-a relationships. took 0.006 seconds
2018-11-22 06:18:22.934 INFO 1862 --- [ main] io.kaicode.elasticvc.api.BranchService : Completed commit on MAIN at 1542867502571
2018-11-22 06:18:34.270 INFO 1862 --- [nio-8080-exec-2] o.a.c.c.C.[Tomcat].[localhost].[/] : Initializing Spring FrameworkServlet 'dispatcherServlet'
2018-11-22 06:18:34.270 INFO 1862 --- [nio-8080-exec-2] o.s.web.servlet.DispatcherServlet : FrameworkServlet 'dispatcherServlet': initialization started
2018-11-22 06:18:34.293 INFO 1862 --- [nio-8080-exec-2] o.s.web.servlet.DispatcherServlet : FrameworkServlet 'dispatcherServlet': initialization completed in 23 ms
____ _
__/\__ / ___| _ __ _____ _____| |_ ___ _ __ _ __ ___
\ / \___ \| '_ \ / _ \ \ /\ / / __| __/ _ \| '__| '_ ` _ \
/_ _\ ___) | | | | (_) \ V V /\__ \ || (_) | | | | | | | |
\/ |____/|_| |_|\___/ \_/\_/ |___/\__\___/|_| |_| |_| |_|
===============================================================
:: Snowstorm, SNOMED CT Terminology Server :: (v2.1.1-SNAPSHOT)
2018-11-22 06:19:56.178 INFO 2003 --- [ main] org.snomed.snowstorm.App : Starting App v2.1.1-SNAPSHOT on ip-10-0-13-236 with PID 2003 (/home/rda/snowstorm-2.1.1-SNAPSHOT.jar started by root in /home/rda)
2018-11-22 06:19:56.183 INFO 2003 --- [ main] org.snomed.snowstorm.App : No active profile set, falling back to default profiles: default
2018-11-22 06:19:56.303 INFO 2003 --- [ main] ConfigServletWebServerApplicationContext : Refreshing org.springframework.boot.web.servlet.context.AnnotationConfigServletWebServerApplicationContext@769c9116: startup date [Thu Nov 22 06:19:56 UTC 2018]; root of context hierarchy
2018-11-22 06:19:57.664 INFO 2003 --- [ main] o.s.b.f.s.DefaultListableBeanFactory : Overriding bean definition for bean 'domainEntityConfiguration' with a different definition: replacing [Generic bean: class [org.snomed.snowstorm.core.data.services.DomainEntityConfiguration]; scope=singleton; abstract=false; lazyInit=false; autowireMode=0; dependencyCheck=0; autowireCandidate=true; primary=false; factoryBeanName=null; factoryMethodName=null; initMethodName=null; destroyMethodName=null; defined in URL [jar:file:/home/rda/snowstorm-2.1.1-SNAPSHOT.jar!/BOOT-INF/classes!/org/snomed/snowstorm/core/data/services/DomainEntityConfiguration.class]] with [Root bean: class [null]; scope=; abstract=false; lazyInit=false; autowireMode=3; dependencyCheck=0; autowireCandidate=true; primary=false; factoryBeanName=app; factoryMethodName=domainEntityConfiguration; initMethodName=null; destroyMethodName=(inferred); defined in org.snomed.snowstorm.App]
2018-11-22 06:19:58.301 INFO 2003 --- [ main] f.a.AutowiredAnnotationBeanPostProcessor : JSR-330 'javax.inject.Inject' annotation found and supported for autowiring
2018-11-22 06:19:58.892 INFO 2003 --- [ main] o.s.b.w.embedded.tomcat.TomcatWebServer : Tomcat initialized with port(s): 8080 (http)
2018-11-22 06:19:58.927 INFO 2003 --- [ main] o.apache.catalina.core.StandardService : Starting service [Tomcat]
2018-11-22 06:19:58.928 INFO 2003 --- [ main] org.apache.catalina.core.StandardEngine : Starting Servlet Engine: Apache Tomcat/8.5.29
2018-11-22 06:19:59.008 INFO 2003 --- [ost-startStop-1] o.a.catalina.core.AprLifecycleListener : The APR based Apache Tomcat Native library which allows optimal performance in production environments was not found on the java.library.path: [/usr/java/packages/lib/amd64:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib]
2018-11-22 06:19:59.098 INFO 2003 --- [ost-startStop-1] o.a.c.c.C.[Tomcat].[localhost].[/] : Initializing Spring embedded WebApplicationContext
2018-11-22 06:19:59.099 INFO 2003 --- [ost-startStop-1] o.s.web.context.ContextLoader : Root WebApplicationContext: initialization completed in 2799 ms
2018-11-22 06:20:01.178 INFO 2003 --- [heManagerDaemon] o.s.s.c.d.s.i.IdentifierCacheManager : Identifier cache manager polling commencing with 10 second period.
2018-11-22 06:20:01.180 INFO 2003 --- [heManagerDaemon] o.s.s.c.d.s.i.IdentifierCacheManager : Topping up IdCache(0 - 02) by 4000
2018-11-22 06:20:01.200 INFO 2003 --- [heManagerDaemon] o.s.s.c.d.s.i.IdentifierCacheManager : Top up of IdCache(0 - 02) by 4000 complete
2018-11-22 06:20:01.200 INFO 2003 --- [heManagerDaemon] o.s.s.c.d.s.i.IdentifierCacheManager : Topping up IdCache(0 - 00) by 1000
2018-11-22 06:20:01.205 INFO 2003 --- [heManagerDaemon] o.s.s.c.d.s.i.IdentifierCacheManager : Top up of IdCache(0 - 00) by 1000 complete
2018-11-22 06:20:01.205 INFO 2003 --- [heManagerDaemon] o.s.s.c.d.s.i.IdentifierCacheManager : Topping up IdCache(0 - 01) by 2000
2018-11-22 06:20:01.211 INFO 2003 --- [heManagerDaemon] o.s.s.c.d.s.i.IdentifierCacheManager : Top up of IdCache(0 - 01) by 2000 complete
2018-11-22 06:20:01.659 INFO 2003 --- [ost-startStop-1] ca.uhn.fhir.util.VersionUtil : HAPI FHIR version is: 3.2.0
2018-11-22 06:20:01.885 INFO 2003 --- [ost-startStop-1] o.s.b.w.servlet.FilterRegistrationBean : Mapping filter: 'characterEncodingFilter' to: [/*]
2018-11-22 06:20:01.886 INFO 2003 --- [ost-startStop-1] o.s.b.w.servlet.FilterRegistrationBean : Mapping filter: 'hiddenHttpMethodFilter' to: [/*]
2018-11-22 06:20:01.886 INFO 2003 --- [ost-startStop-1] o.s.b.w.servlet.FilterRegistrationBean : Mapping filter: 'httpPutFormContentFilter' to: [/*]
2018-11-22 06:20:01.886 INFO 2003 --- [ost-startStop-1] o.s.b.w.servlet.FilterRegistrationBean : Mapping filter: 'requestContextFilter' to: [/*]
2018-11-22 06:20:01.886 INFO 2003 --- [ost-startStop-1] .s.DelegatingFilterProxyRegistrationBean : Mapping filter: 'springSecurityFilterChain' to: [/*]
2018-11-22 06:20:01.887 INFO 2003 --- [ost-startStop-1] o.s.b.w.servlet.FilterRegistrationBean : Mapping filter: 'requestHeaderAuthenticationDecorator' to: [/*]
2018-11-22 06:20:01.887 INFO 2003 --- [ost-startStop-1] o.s.b.w.servlet.FilterRegistrationBean : Mapping filter: 'requestHeaderAuthenticationDecoratorWithRequiredRole' to: [/*]
2018-11-22 06:20:01.887 INFO 2003 --- [ost-startStop-1] o.s.b.w.servlet.FilterRegistrationBean : Mapping filter: 'branchPathUriRewriteFilter' to: [/*]
2018-11-22 06:20:01.887 INFO 2003 --- [ost-startStop-1] o.s.b.w.servlet.ServletRegistrationBean : Servlet hapiRestfulServlet mapped to [/fhir/*]
2018-11-22 06:20:01.889 INFO 2003 --- [ost-startStop-1] o.s.b.w.servlet.ServletRegistrationBean : Servlet dispatcherServlet mapped to [/]
2018-11-22 06:20:02.221 ERROR 2003 --- [ main] org.ihtsdo.drools.RuleExecutor : Rules directory does not exist: /opt/snowstorm/snomed-drools-rules
2018-11-22 06:20:02.886 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/branches],methods=[GET],produces=[application/json]}" onto public java.util.List<io.kaicode.elasticvc.domain.Branch> org.snomed.snowstorm.rest.BranchController.retrieveAllBranches()
2018-11-22 06:20:02.888 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/branches/{path}/actions/unlock],methods=[POST],produces=[application/json]}" onto public void org.snomed.snowstorm.rest.BranchController.unlockBranch(java.lang.String)
2018-11-22 06:20:02.888 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/reviews],methods=[POST],produces=[application/json]}" onto public org.springframework.http.ResponseEntity<java.lang.Void> org.snomed.snowstorm.rest.BranchController.createBranchReview(org.snomed.snowstorm.rest.pojo.CreateReviewRequest)
2018-11-22 06:20:02.889 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/branches/{path}],methods=[PUT],produces=[application/json]}" onto public org.snomed.snowstorm.rest.pojo.BranchPojo org.snomed.snowstorm.rest.BranchController.updateBranch(java.lang.String,org.snomed.snowstorm.rest.pojo.UpdateBranchRequest) throws com.fasterxml.jackson.core.JsonProcessingException
2018-11-22 06:20:02.889 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/branches/{path}],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.rest.pojo.BranchPojo org.snomed.snowstorm.rest.BranchController.retrieveBranch(java.lang.String,boolean)
2018-11-22 06:20:02.889 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/branches],methods=[POST],produces=[application/json]}" onto public org.snomed.snowstorm.rest.pojo.BranchPojo org.snomed.snowstorm.rest.BranchController.createBranch(org.snomed.snowstorm.rest.pojo.CreateBranchRequest)
2018-11-22 06:20:02.890 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/integrity-check-full],methods=[POST],produces=[application/json]}" onto public org.snomed.snowstorm.core.data.services.pojo.IntegrityIssueReport org.snomed.snowstorm.rest.BranchController.fullIntegrityCheck(java.lang.String)
2018-11-22 06:20:02.890 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/integrity-check],methods=[POST],produces=[application/json]}" onto public org.snomed.snowstorm.core.data.services.pojo.IntegrityIssueReport org.snomed.snowstorm.rest.BranchController.integrityCheck(java.lang.String)
2018-11-22 06:20:02.890 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/merges/{mergeId}],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.core.data.domain.BranchMergeJob org.snomed.snowstorm.rest.BranchController.retrieveMerge(java.lang.String)
2018-11-22 06:20:02.891 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/merge-reviews/{id}/apply],methods=[POST],produces=[application/json]}" onto public void org.snomed.snowstorm.rest.BranchController.applyMergeReview(java.lang.String) throws org.snomed.snowstorm.core.data.services.ServiceException
2018-11-22 06:20:02.891 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/merges],methods=[POST],produces=[application/json]}" onto public org.springframework.http.ResponseEntity<java.lang.Void> org.snomed.snowstorm.rest.BranchController.mergeBranch(org.snomed.snowstorm.rest.pojo.MergeRequest)
2018-11-22 06:20:02.892 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/merge-reviews/{id}],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.core.data.domain.review.MergeReview org.snomed.snowstorm.rest.BranchController.getMergeReview(java.lang.String)
2018-11-22 06:20:02.892 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/merge-reviews/{id}/details],methods=[GET],produces=[application/json]}" onto public java.util.Collection<org.snomed.snowstorm.core.data.domain.review.MergeReviewConceptVersions> org.snomed.snowstorm.rest.BranchController.getMergeReviewConflictingConcepts(java.lang.String,java.lang.String)
2018-11-22 06:20:02.892 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/merge-reviews/{id}/{conceptId}],methods=[POST],produces=[application/json]}" onto public void org.snomed.snowstorm.rest.BranchController.getMergeReviewConflictingConcepts(java.lang.String,java.lang.String,org.snomed.snowstorm.core.data.domain.Concept)
2018-11-22 06:20:02.893 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/reviews/{id}/concept-changes],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.core.data.domain.review.BranchReviewConceptChanges org.snomed.snowstorm.rest.BranchController.getBranchReviewConceptChanges(java.lang.String)
2018-11-22 06:20:02.893 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/merge-reviews],methods=[POST],produces=[application/json]}" onto public org.springframework.http.ResponseEntity<java.lang.Void> org.snomed.snowstorm.rest.BranchController.createMergeReview(org.snomed.snowstorm.rest.pojo.CreateReviewRequest)
2018-11-22 06:20:02.893 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/reviews/{id}],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.core.data.domain.review.BranchReview org.snomed.snowstorm.rest.BranchController.getBranchReview(java.lang.String)
2018-11-22 06:20:02.896 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/imports],methods=[POST],produces=[application/json]}" onto public org.springframework.http.ResponseEntity<java.lang.Void> org.snomed.snowstorm.rest.ImportController.createImportJob(org.snomed.snowstorm.rest.pojo.ImportCreationRequest)
2018-11-22 06:20:02.896 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/imports/release-patch],methods=[POST],produces=[application/json]}" onto public org.springframework.http.ResponseEntity<java.lang.Void> org.snomed.snowstorm.rest.ImportController.createReleasePatchImportJob(org.snomed.snowstorm.rest.pojo.ImportPatchCreationRequest)
2018-11-22 06:20:02.896 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/imports/{importId}],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.core.rf2.rf2import.ImportJob org.snomed.snowstorm.rest.ImportController.getImportJob(java.lang.String)
2018-11-22 06:20:02.897 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/imports/{importId}/archive],methods=[POST],consumes=[multipart/form-data],produces=[application/json]}" onto public void org.snomed.snowstorm.rest.ImportController.uploadImportRf2Archive(java.lang.String,org.springframework.web.multipart.MultipartFile)
2018-11-22 06:20:02.898 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/exports],methods=[POST],produces=[application/json]}" onto public org.springframework.http.ResponseEntity<java.lang.Void> org.snomed.snowstorm.rest.ExportController.createExportJob(org.snomed.snowstorm.core.data.domain.jobs.ExportConfiguration)
2018-11-22 06:20:02.898 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/exports/{exportId}/archive],methods=[GET],produces=[application/zip]}" onto public void org.snomed.snowstorm.rest.ExportController.downloadRf2Archive(java.lang.String,javax.servlet.http.HttpServletResponse) throws java.io.IOException
2018-11-22 06:20:02.898 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/exports/{exportId}],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.core.data.domain.jobs.ExportConfiguration org.snomed.snowstorm.rest.ExportController.getExportJob(java.lang.String)
2018-11-22 06:20:02.900 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/codesystems/{shortName}/migrate],methods=[POST],produces=[application/json]}" onto public void org.snomed.snowstorm.rest.CodeSystemController.migrateCodeSystem(java.lang.String,org.snomed.snowstorm.rest.pojo.CodeSystemMigrationRequest)
2018-11-22 06:20:02.900 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/codesystems],methods=[POST],produces=[application/json]}" onto public org.springframework.http.ResponseEntity<java.lang.Void> org.snomed.snowstorm.rest.CodeSystemController.createCodeSystem(org.snomed.snowstorm.core.data.domain.CodeSystem)
2018-11-22 06:20:02.900 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/codesystems/{shortName}/versions],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.rest.pojo.ItemsPage<org.snomed.snowstorm.core.data.domain.CodeSystemVersion> org.snomed.snowstorm.rest.CodeSystemController.findAllVersions(java.lang.String)
2018-11-22 06:20:02.901 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/codesystems/{shortName}/versions],methods=[POST],produces=[application/json]}" onto public org.springframework.http.ResponseEntity<java.lang.Void> org.snomed.snowstorm.rest.CodeSystemController.createVersion(java.lang.String,org.snomed.snowstorm.rest.pojo.CreateCodeSystemVersionRequest)
2018-11-22 06:20:02.901 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/codesystems],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.rest.pojo.ItemsPage<org.snomed.snowstorm.core.data.domain.CodeSystem> org.snomed.snowstorm.rest.CodeSystemController.findAll()
2018-11-22 06:20:02.901 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/codesystems/{shortName}],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.core.data.domain.CodeSystem org.snomed.snowstorm.rest.CodeSystemController.findCodeSystem(java.lang.String)
2018-11-22 06:20:02.902 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/version],methods=[GET]}" onto public org.snomed.snowstorm.rest.pojo.BuildVersion org.snomed.snowstorm.rest.VersionController.getBuildInformation()
2018-11-22 06:20:02.905 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/browser/{branch}/concepts/{conceptId}/parents],methods=[GET],produces=[application/json]}" onto public java.util.Collection<org.snomed.snowstorm.core.data.domain.ConceptMini> org.snomed.snowstorm.rest.ConceptController.findConceptParents(java.lang.String,java.lang.String,org.snomed.snowstorm.core.data.domain.Relationship$CharacteristicType,java.lang.String)
2018-11-22 06:20:02.906 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/browser/{branch}/concepts/{conceptId}/ancestors],methods=[GET],produces=[application/json]}" onto public java.util.Collection<org.snomed.snowstorm.core.data.domain.ConceptMini> org.snomed.snowstorm.rest.ConceptController.findConceptAncestors(java.lang.String,java.lang.String,org.snomed.snowstorm.core.data.domain.Relationship$CharacteristicType,java.lang.String)
2018-11-22 06:20:02.906 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/rebuild/{branch}],methods=[POST],produces=[application/json]}" onto public void org.snomed.snowstorm.rest.ConceptController.rebuildBranchTransitiveClosure(java.lang.String) throws org.snomed.otf.owltoolkit.conversion.ConversionException
2018-11-22 06:20:02.906 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/concepts/{conceptId}/authoring-form],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.core.data.domain.expression.Expression org.snomed.snowstorm.rest.ConceptController.getConceptAuthoringForm(java.lang.String,java.lang.String,java.lang.String)
2018-11-22 06:20:02.907 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/concepts/{conceptId}/descriptions],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.rest.pojo.ConceptDescriptionsResult org.snomed.snowstorm.rest.ConceptController.findConceptDescriptions(java.lang.String,java.lang.String,java.lang.String)
2018-11-22 06:20:02.907 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/concepts/{conceptId}/descendants],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.rest.pojo.ItemsPage<org.snomed.snowstorm.core.data.domain.ConceptMini> org.snomed.snowstorm.rest.ConceptController.findConceptDescendants(java.lang.String,java.lang.String,boolean,int,int,java.lang.String)
2018-11-22 06:20:02.907 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/concepts/{conceptId}/inbound-relationships],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.rest.pojo.InboundRelationshipsResult org.snomed.snowstorm.rest.ConceptController.findConceptInboundRelationships(java.lang.String,java.lang.String)
2018-11-22 06:20:02.908 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/browser/{branch}/concepts],methods=[POST],produces=[application/json]}" onto public org.snomed.snowstorm.core.data.domain.ConceptView org.snomed.snowstorm.rest.ConceptController.createConcept(java.lang.String,org.snomed.snowstorm.core.data.domain.ConceptView,java.lang.String) throws org.snomed.snowstorm.core.data.services.ServiceException
2018-11-22 06:20:02.908 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/concepts/{conceptId}],methods=[DELETE],produces=[application/json]}" onto public void org.snomed.snowstorm.rest.ConceptController.deleteConcept(java.lang.String,java.lang.String)
2018-11-22 06:20:02.908 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/browser/{branch}/concepts/bulk],methods=[POST],produces=[application/json]}" onto public org.springframework.http.ResponseEntity org.snomed.snowstorm.rest.ConceptController.createConceptBulkChange(java.lang.String,java.util.List<org.snomed.snowstorm.core.data.domain.ConceptView>,org.springframework.web.util.UriComponentsBuilder)
2018-11-22 06:20:02.908 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/browser/{branch}/concepts/bulk/{bulkChangeId}],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.core.data.services.pojo.AsyncConceptChangeBatch org.snomed.snowstorm.rest.ConceptController.getConceptBulkChange(java.lang.String,java.lang.String)
2018-11-22 06:20:02.909 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/browser/{branch}/concepts/{conceptId}/children],methods=[GET],produces=[application/json]}" onto public java.util.Collection<org.snomed.snowstorm.core.data.domain.ConceptMini> org.snomed.snowstorm.rest.ConceptController.findConceptChildren(java.lang.String,java.lang.String,org.snomed.snowstorm.core.data.domain.Relationship$CharacteristicType,java.lang.String)
2018-11-22 06:20:02.909 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/concepts/{conceptId}],methods=[GET],produces=[application/json || text/csv]}" onto public org.snomed.snowstorm.core.data.domain.ConceptMini org.snomed.snowstorm.rest.ConceptController.findConcept(java.lang.String,java.lang.String,java.lang.String)
2018-11-22 06:20:02.909 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/concepts],methods=[GET],produces=[application/json || text/csv]}" onto public org.snomed.snowstorm.rest.pojo.ItemsPage<org.snomed.snowstorm.core.data.domain.ConceptMini> org.snomed.snowstorm.rest.ConceptController.findConcepts(java.lang.String,java.lang.Boolean,java.lang.String,java.lang.String,java.lang.String,java.lang.String,java.lang.String,java.util.Set<java.lang.String>,int,int,java.lang.String)
2018-11-22 06:20:02.910 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/browser/{branch}/concepts/bulk-load],methods=[POST],produces=[application/json]}" onto public java.util.Collection<org.snomed.snowstorm.core.data.domain.Concept> org.snomed.snowstorm.rest.ConceptController.getBrowserConcepts(java.lang.String,org.snomed.snowstorm.rest.pojo.ConceptIdsPojo,java.lang.String)
2018-11-22 06:20:02.910 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/browser/{branch}/concepts],methods=[GET],produces=[application/json]}" onto public org.springframework.data.domain.Page<? extends org.snomed.snowstorm.core.data.domain.ConceptView> org.snomed.snowstorm.rest.ConceptController.getBrowserConcepts(java.lang.String,int,int,java.lang.String)
2018-11-22 06:20:02.910 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/browser/{branch}/concepts/{conceptId}],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.core.data.domain.ConceptView org.snomed.snowstorm.rest.ConceptController.findBrowserConcept(java.lang.String,java.lang.String,java.lang.String)
2018-11-22 06:20:02.911 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/browser/{branch}/concepts/{conceptId}],methods=[PUT],produces=[application/json]}" onto public org.snomed.snowstorm.core.data.domain.ConceptView org.snomed.snowstorm.rest.ConceptController.updateConcept(java.lang.String,java.lang.String,org.snomed.snowstorm.core.data.domain.ConceptView,java.lang.String) throws org.snomed.snowstorm.core.data.services.ServiceException
2018-11-22 06:20:02.911 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/concepts/search],methods=[POST],produces=[application/json || text/csv]}" onto public org.snomed.snowstorm.rest.pojo.ItemsPage<org.snomed.snowstorm.core.data.domain.ConceptMini> org.snomed.snowstorm.rest.ConceptController.search(java.lang.String,org.snomed.snowstorm.rest.pojo.ConceptSearchRequest,java.lang.String)
2018-11-22 06:20:02.912 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/relationships],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.rest.pojo.ItemsPage<org.snomed.snowstorm.core.data.domain.Relationship> org.snomed.snowstorm.rest.RelationshipController.findRelationships(java.lang.String,java.lang.Boolean,java.lang.String,java.lang.String,java.lang.String,java.lang.String,java.lang.String,org.snomed.snowstorm.rest.RelationshipController$RelationshipCharacteristicType,java.lang.Integer,int,int,java.lang.String)
2018-11-22 06:20:02.912 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/relationships/{relationshipId}],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.core.data.domain.Relationship org.snomed.snowstorm.rest.RelationshipController.fetchRelationship(java.lang.String,java.lang.String,java.lang.String)
2018-11-22 06:20:02.913 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/mrcm/{path}/domain-attributes],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.rest.pojo.ItemsPage<org.snomed.snowstorm.core.data.domain.ConceptMini> org.snomed.snowstorm.rest.MRCMController.retrieveDomainAttributes(java.lang.String,java.util.Set<java.lang.Long>,java.lang.String)
2018-11-22 06:20:02.914 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/mrcm/{path}/attribute-values/{attributeId}],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.rest.pojo.ItemsPage<org.snomed.snowstorm.core.data.domain.ConceptMini> org.snomed.snowstorm.rest.MRCMController.retrieveAttributeValues(java.lang.String,java.lang.String,java.lang.String,java.lang.String)
2018-11-22 06:20:02.914 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/mrcm/reload],methods=[POST],consumes=[multipart/form-data],produces=[application/json]}" onto public void org.snomed.snowstorm.rest.MRCMController.reloadMrcm() throws org.snomed.snowstorm.core.data.services.ServiceException
2018-11-22 06:20:02.916 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/members/{uuid}],methods=[DELETE],produces=[application/json]}" onto public void org.snomed.snowstorm.rest.ReferenceSetMemberController.deleteMember(java.lang.String,java.lang.String)
2018-11-22 06:20:02.916 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/members],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.rest.pojo.ItemsPage<org.snomed.snowstorm.core.data.domain.ReferenceSetMember> org.snomed.snowstorm.rest.ReferenceSetMemberController.findRefsetMembers(java.lang.String,java.lang.String,java.lang.String,java.lang.Boolean,java.lang.String,java.lang.String,int,int,java.lang.String)
2018-11-22 06:20:02.917 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/members/{uuid}],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.core.data.domain.ReferenceSetMember org.snomed.snowstorm.rest.ReferenceSetMemberController.fetchMember(java.lang.String,java.lang.String,java.lang.String)
2018-11-22 06:20:02.917 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/browser/{branch}/validate/concepts],methods=[POST],produces=[application/json]}" onto public java.util.List<org.ihtsdo.drools.response.InvalidContent> org.snomed.snowstorm.rest.ConceptValidationController.validateConcepts(java.lang.String,java.util.Set<org.snomed.snowstorm.core.data.domain.Concept>) throws org.snomed.snowstorm.core.data.services.ServiceException
2018-11-22 06:20:02.918 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/browser/{branch}/validate/concept],methods=[POST],produces=[application/json]}" onto public java.util.List<org.ihtsdo.drools.response.InvalidContent> org.snomed.snowstorm.rest.ConceptValidationController.validateConcept(java.lang.String,org.snomed.snowstorm.core.data.domain.Concept) throws org.snomed.snowstorm.core.data.services.ServiceException
2018-11-22 06:20:02.918 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/authoring-mirror/activities],methods=[POST],produces=[application/json]}" onto public void org.snomed.snowstorm.rest.AuthoringMirrorController.mirrorAuthoring(org.springframework.web.multipart.MultipartFile) throws java.io.IOException,org.snomed.snowstorm.core.data.services.ServiceException
2018-11-22 06:20:02.920 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/classifications],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.rest.pojo.ItemsPage<org.snomed.snowstorm.core.data.domain.classification.Classification> org.snomed.snowstorm.rest.ClassificationController.findClassifications(java.lang.String)
2018-11-22 06:20:02.920 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/classifications/{classificationId}],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.core.data.domain.classification.Classification org.snomed.snowstorm.rest.ClassificationController.findClassification(java.lang.String,java.lang.String)
2018-11-22 06:20:02.920 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/classifications/{classificationId}],methods=[PUT],produces=[application/json]}" onto public void org.snomed.snowstorm.rest.ClassificationController.updateClassification(java.lang.String,java.lang.String,org.snomed.snowstorm.rest.pojo.ClassificationUpdateRequest)
2018-11-22 06:20:02.921 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/classifications],methods=[POST],produces=[application/json]}" onto public org.springframework.http.ResponseEntity org.snomed.snowstorm.rest.ClassificationController.createClassification(java.lang.String,java.lang.String,org.springframework.web.util.UriComponentsBuilder) throws org.snomed.snowstorm.core.data.services.ServiceException
2018-11-22 06:20:02.921 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/classifications/{classificationId}/relationship-changes],methods=[GET],produces=[application/json || text/csv]}" onto public org.snomed.snowstorm.rest.pojo.ItemsPage<org.snomed.snowstorm.core.data.domain.classification.RelationshipChange> org.snomed.snowstorm.rest.ClassificationController.getRelationshipChanges(java.lang.String,java.lang.String,int,int,java.lang.String)
2018-11-22 06:20:02.921 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/classifications/{classificationId}/equivalent-concepts],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.rest.pojo.ItemsPage<org.snomed.snowstorm.core.data.services.classification.pojo.EquivalentConceptsResponse> org.snomed.snowstorm.rest.ClassificationController.getEquivalentConcepts(java.lang.String,java.lang.String,int,int,java.lang.String)
2018-11-22 06:20:02.922 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/classifications/{classificationId}/concept-preview/{conceptId}],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.core.data.domain.ConceptView org.snomed.snowstorm.rest.ClassificationController.getConceptPreview(java.lang.String,java.lang.String,java.lang.String,java.lang.String)
2018-11-22 06:20:02.922 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/],methods=[GET]}" onto public void org.snomed.snowstorm.rest.RootController.getRoot(javax.servlet.http.HttpServletResponse) throws java.io.IOException
2018-11-22 06:20:02.923 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/descriptions],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.rest.pojo.ItemsPage<org.snomed.snowstorm.core.data.domain.Description> org.snomed.snowstorm.rest.DescriptionController.findDescriptions(java.lang.String,java.lang.String,int,int,java.lang.String)
2018-11-22 06:20:02.923 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/browser/{branch}/descriptions],methods=[GET],produces=[application/json]}" onto public org.springframework.data.domain.Page<org.snomed.snowstorm.rest.pojo.BrowserDescriptionSearchResult> org.snomed.snowstorm.rest.DescriptionController.findBrowserDescriptions(java.lang.String,java.lang.String,java.lang.Boolean,java.lang.String,int,int,java.lang.String)
2018-11-22 06:20:02.923 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/descriptions/{descriptionId}],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.core.data.domain.Description org.snomed.snowstorm.rest.DescriptionController.fetchDescription(java.lang.String,java.lang.String)
2018-11-22 06:20:02.924 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/v2/api-docs],methods=[GET],produces=[application/json || application/hal+json]}" onto public org.springframework.http.ResponseEntity<springfox.documentation.spring.web.json.Json> springfox.documentation.swagger2.web.Swagger2Controller.getDocumentation(java.lang.String,javax.servlet.http.HttpServletRequest)
2018-11-22 06:20:02.928 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/swagger-resources/configuration/ui]}" onto org.springframework.http.ResponseEntity<springfox.documentation.swagger.web.UiConfiguration> springfox.documentation.swagger.web.ApiResourceController.uiConfiguration()
2018-11-22 06:20:02.929 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/swagger-resources/configuration/security]}" onto org.springframework.http.ResponseEntity<springfox.documentation.swagger.web.SecurityConfiguration> springfox.documentation.swagger.web.ApiResourceController.securityConfiguration()
2018-11-22 06:20:02.930 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/swagger-resources]}" onto org.springframework.http.ResponseEntity<java.util.List<springfox.documentation.swagger.web.SwaggerResource>> springfox.documentation.swagger.web.ApiResourceController.swaggerResources()
2018-11-22 06:20:02.935 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/error],produces=[text/html]}" onto public org.springframework.web.servlet.ModelAndView org.springframework.boot.autoconfigure.web.servlet.error.BasicErrorController.errorHtml(javax.servlet.http.HttpServletRequest,javax.servlet.http.HttpServletResponse)
2018-11-22 06:20:02.936 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/error]}" onto public org.springframework.http.ResponseEntity<java.util.Map<java.lang.String, java.lang.Object>> org.springframework.boot.autoconfigure.web.servlet.error.BasicErrorController.error(javax.servlet.http.HttpServletRequest)
2018-11-22 06:20:03.417 INFO 2003 --- [ main] o.s.s.web.DefaultSecurityFilterChain : Creating filter chain: org.springframework.security.web.util.matcher.AnyRequestMatcher@1, [org.springframework.security.web.context.request.async.WebAsyncManagerIntegrationFilter@2c78324b, org.springframework.security.web.context.SecurityContextPersistenceFilter@68746f22, org.springframework.security.web.header.HeaderWriterFilter@4a07d605, org.springframework.security.web.authentication.logout.LogoutFilter@78fa769e, org.springframework.security.web.savedrequest.RequestCacheAwareFilter@68878f6d, org.springframework.security.web.servletapi.SecurityContextHolderAwareRequestFilter@2eea88a1, org.springframework.security.web.authentication.AnonymousAuthenticationFilter@79defdc, org.springframework.security.web.session.SessionManagementFilter@7d7758be, org.springframework.security.web.access.ExceptionTranslationFilter@45efd90f]
2018-11-22 06:20:03.613 INFO 2003 --- [ main] o.s.w.s.handler.SimpleUrlHandlerMapping : Mapped URL path [/**/favicon.ico] onto handler of type [class org.springframework.web.servlet.resource.ResourceHttpRequestHandler]
2018-11-22 06:20:03.835 INFO 2003 --- [ main] s.w.s.m.m.a.RequestMappingHandlerAdapter : Looking for @ControllerAdvice: org.springframework.boot.web.servlet.context.AnnotationConfigServletWebServerApplicationContext@769c9116: startup date [Thu Nov 22 06:19:56 UTC 2018]; root of context hierarchy
2018-11-22 06:20:04.282 INFO 2003 --- [ main] o.s.w.s.handler.SimpleUrlHandlerMapping : Mapped URL path [/webjars/**] onto handler of type [class org.springframework.web.servlet.resource.ResourceHttpRequestHandler]
2018-11-22 06:20:04.282 INFO 2003 --- [ main] o.s.w.s.handler.SimpleUrlHandlerMapping : Mapped URL path [/**] onto handler of type [class org.springframework.web.servlet.resource.ResourceHttpRequestHandler]
2018-11-22 06:20:04.310 INFO 2003 --- [ main] .m.m.a.ExceptionHandlerExceptionResolver : Detected @ExceptionHandler methods in restControllerAdvice
2018-11-22 06:20:04.763 INFO 2003 --- [ main] o.s.j.e.a.AnnotationMBeanExporter : Registering beans for JMX exposure on startup
2018-11-22 06:20:04.776 INFO 2003 --- [ main] o.s.c.support.DefaultLifecycleProcessor : Starting beans in phase 2147483647
2018-11-22 06:20:04.776 INFO 2003 --- [ main] d.s.w.p.DocumentationPluginsBootstrapper : Context refreshed
2018-11-22 06:20:04.792 INFO 2003 --- [ main] d.s.w.p.DocumentationPluginsBootstrapper : Found 1 custom documentation plugin(s)
2018-11-22 06:20:04.807 INFO 2003 --- [ main] s.d.s.w.s.ApiListingReferenceScanner : Scanning for api listing references
2018-11-22 06:20:05.653 INFO 2003 --- [ main] o.apache.activemq.broker.BrokerService : Using Persistence Adapter: MemoryPersistenceAdapter
2018-11-22 06:20:05.687 INFO 2003 --- [ JMX connector] o.a.a.broker.jmx.ManagementContext : JMX consoles can connect to service:jmx:rmi:///jndi/rmi://localhost:1099/jmxrmi
2018-11-22 06:20:05.827 INFO 2003 --- [ main] o.apache.activemq.broker.BrokerService : Apache ActiveMQ 5.15.3 (localhost, ID:ip-10-0-13-236-34355-1542867605683-0:1) is starting
2018-11-22 06:20:05.835 INFO 2003 --- [ main] o.apache.activemq.broker.BrokerService : Apache ActiveMQ 5.15.3 (localhost, ID:ip-10-0-13-236-34355-1542867605683-0:1) started
2018-11-22 06:20:05.835 INFO 2003 --- [ main] o.apache.activemq.broker.BrokerService : For help or more information please see: http://activemq.apache.org
2018-11-22 06:20:05.876 INFO 2003 --- [ main] o.a.activemq.broker.TransportConnector : Connector vm://localhost started
2018-11-22 06:20:06.004 INFO 2003 --- [ main] o.s.b.w.embedded.tomcat.TomcatWebServer : Tomcat started on port(s): 8080 (http) with context path ''
2018-11-22 06:20:06.016 INFO 2003 --- [ main] org.snomed.snowstorm.App : Started App in 10.419 seconds (JVM running for 10.951)
2018-11-22 06:20:06.020 INFO 2003 --- [ main] i.k.elasticvc.api.ComponentService : Initialising indices
2018-11-22 06:20:06.139 INFO 2003 --- [ main] org.snomed.snowstorm.mrcm.MRCMLoader : Loading MRCM from XML document.
2018-11-22 06:20:06.276 INFO 2003 --- [ main] org.snomed.snowstorm.mrcm.MRCMLoader : MRCM loaded with 16 domains and 100 attributes.
2018-11-22 06:20:49.035 INFO 2003 --- [nio-8080-exec-1] o.a.c.c.C.[Tomcat].[localhost].[/] : Initializing Spring FrameworkServlet 'dispatcherServlet'
2018-11-22 06:20:49.035 INFO 2003 --- [nio-8080-exec-1] o.s.web.servlet.DispatcherServlet : FrameworkServlet 'dispatcherServlet': initialization started
2018-11-22 06:20:49.054 INFO 2003 --- [nio-8080-exec-1] o.s.web.servlet.DispatcherServlet : FrameworkServlet 'dispatcherServlet': initialization completed in 19 ms
2018-11-22 06:21:54.225 ERROR 2003 --- [nio-8080-exec-3] o.s.s.rest.config.RestControllerAdvice : Unhandled exception.
org.springframework.web.multipart.MultipartException: Failed to parse multipart servlet request; nested exception is java.io.IOException: org.apache.tomcat.util.http.fileupload.FileUploadBase$IOFileUploadException: Processing of multipart/form-data request failed. Unexpected EOF read on the socket
at org.springframework.web.multipart.support.StandardMultipartHttpServletRequest.handleParseFailure(StandardMultipartHttpServletRequest.java:122) ~[spring-web-5.0.5.RELEASE.jar!/:5.0.5.RELEASE]
at org.springframework.web.multipart.support.StandardMultipartHttpServletRequest.parseRequest(StandardMultipartHttpServletRequest.java:113) ~[spring-web-5.0.5.RELEASE.jar!/:5.0.5.RELEASE]
at org.springframework.web.multipart.support.StandardMultipartHttpServletRequest.<init>(StandardMultipartHttpServletRequest.java:86) ~[spring-web-5.0.5.RELEASE.jar!/:5.0.5.RELEASE]
at org.springframework.web.multipart.support.StandardServletMultipartResolver.resolveMultipart(StandardServletMultipartResolver.java:93) ~[spring-web-5.0.5.RELEASE.jar!/:5.0.5.RELEASE]
at org.springframework.web.servlet.DispatcherServlet.checkMultipart(DispatcherServlet.java:1128) ~[spring-webmvc-5.0.5.RELEASE.jar!/:5.0.5.RELEASE]
at org.springframework.web.servlet.DispatcherServlet.doDispatch(DispatcherServlet.java:960) ~[spring-webmvc-5.0.5.RELEASE.jar!/:5.0.5.RELEASE]
at org.springframework.web.servlet.DispatcherServlet.doService(DispatcherServlet.java:925) ~[spring-webmvc-5.0.5.RELEASE.jar!/:5.0.5.RELEASE]
at org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:974) [spring-webmvc-5.0.5.RELEASE.jar!/:5.0.5.RELEASE]
at org.springframework.web.servlet.FrameworkServlet.doPost(FrameworkServlet.java:877) [spring-webmvc-5.0.5.RELEASE.jar!/:5.0.5.RELEASE]
at javax.servlet.http.HttpServlet.service(HttpServlet.java:661) [tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.springframework.web.servlet.FrameworkServlet.service(FrameworkServlet.java:851) [spring-webmvc-5.0.5.RELEASE.jar!/:5.0.5.RELEASE]
at javax.servlet.http.HttpServlet.service(HttpServlet.java:742) [tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:231) [tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166) [tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52) [tomcat-embed-websocket-8.5.29.jar!/:8.5.29]
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193) [tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166) [tomcat-embed-core-8.5.29.jar!/:8.5.29]
at io.kaicode.rest.util.branchpathrewrite.BranchPathUriRewriteFilter.doFilter(BranchPathUriRewriteFilter.java:50) [branch-path-uri-rewrite-filter-2.0.0.jar!/:na]
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193) [tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166) [tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.snomed.snowstorm.rest.security.RequestHeaderAuthenticationDecoratorWithRequiredRole.doFilterInternal(RequestHeaderAuthenticationDecoratorWithRequiredRole.java:43) [classes!/:2.1.1-SNAPSHOT]
at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107) [spring-web-5.0.5.RELEASE.jar!/:5.0.5.RELEASE]
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193) [tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166) [tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:101) [spring-web-5.0.5.RELEASE.jar!/:5.0.5.RELEASE]
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193) [tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166) [tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:320) [spring-security-web-5.0.4.RELEASE.jar!/:5.0.4.RELEASE]
at org.springframework.security.web.access.ExceptionTranslationFilter.doFilter(ExceptionTranslationFilter.java:119) [spring-security-web-5.0.4.RELEASE.jar!/:5.0.4.RELEASE]
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:334) [spring-security-web-5.0.4.RELEASE.jar!/:5.0.4.RELEASE]
at org.springframework.security.web.session.SessionManagementFilter.doFilter(SessionManagementFilter.java:137) [spring-security-web-5.0.4.RELEASE.jar!/:5.0.4.RELEASE]
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:334) [spring-security-web-5.0.4.RELEASE.jar!/:5.0.4.RELEASE]
at org.springframework.security.web.authentication.AnonymousAuthenticationFilter.doFilter(AnonymousAuthenticationFilter.java:111) [spring-security-web-5.0.4.RELEASE.jar!/:5.0.4.RELEASE]
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:334) [spring-security-web-5.0.4.RELEASE.jar!/:5.0.4.RELEASE]
at org.springframework.security.web.servletapi.SecurityContextHolderAwareRequestFilter.doFilter(SecurityContextHolderAwareRequestFilter.java:170) [spring-security-web-5.0.4.RELEASE.jar!/:5.0.4.RELEASE]
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:334) [spring-security-web-5.0.4.RELEASE.jar!/:5.0.4.RELEASE]
at org.springframework.security.web.savedrequest.RequestCacheAwareFilter.doFilter(RequestCacheAwareFilter.java:63) [spring-security-web-5.0.4.RELEASE.jar!/:5.0.4.RELEASE]
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:334) [spring-security-web-5.0.4.RELEASE.jar!/:5.0.4.RELEASE]
at org.springframework.security.web.authentication.logout.LogoutFilter.doFilter(LogoutFilter.java:116) [spring-security-web-5.0.4.RELEASE.jar!/:5.0.4.RELEASE]
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:334) [spring-security-web-5.0.4.RELEASE.jar!/:5.0.4.RELEASE]
at org.springframework.security.web.header.HeaderWriterFilter.doFilterInternal(HeaderWriterFilter.java:66) [spring-security-web-5.0.4.RELEASE.jar!/:5.0.4.RELEASE]
at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107) [spring-web-5.0.5.RELEASE.jar!/:5.0.5.RELEASE]
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:334) [spring-security-web-5.0.4.RELEASE.jar!/:5.0.4.RELEASE]
at org.springframework.security.web.context.SecurityContextPersistenceFilter.doFilter(SecurityContextPersistenceFilter.java:105) [spring-security-web-5.0.4.RELEASE.jar!/:5.0.4.RELEASE]
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:334) [spring-security-web-5.0.4.RELEASE.jar!/:5.0.4.RELEASE]
at org.springframework.security.web.context.request.async.WebAsyncManagerIntegrationFilter.doFilterInternal(WebAsyncManagerIntegrationFilter.java:56) [spring-security-web-5.0.4.RELEASE.jar!/:5.0.4.RELEASE]
at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107) [spring-web-5.0.5.RELEASE.jar!/:5.0.5.RELEASE]
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:334) [spring-security-web-5.0.4.RELEASE.jar!/:5.0.4.RELEASE]
at org.springframework.security.web.FilterChainProxy.doFilterInternal(FilterChainProxy.java:215) [spring-security-web-5.0.4.RELEASE.jar!/:5.0.4.RELEASE]
at org.springframework.security.web.FilterChainProxy.doFilter(FilterChainProxy.java:178) [spring-security-web-5.0.4.RELEASE.jar!/:5.0.4.RELEASE]
at org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:357) [spring-web-5.0.5.RELEASE.jar!/:5.0.5.RELEASE]
at org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:270) [spring-web-5.0.5.RELEASE.jar!/:5.0.5.RELEASE]
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193) [tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166) [tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.springframework.web.filter.RequestContextFilter.doFilterInternal(RequestContextFilter.java:99) [spring-web-5.0.5.RELEASE.jar!/:5.0.5.RELEASE]
at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107) [spring-web-5.0.5.RELEASE.jar!/:5.0.5.RELEASE]
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193) [tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166) [tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.springframework.web.filter.HttpPutFormContentFilter.doFilterInternal(HttpPutFormContentFilter.java:109) [spring-web-5.0.5.RELEASE.jar!/:5.0.5.RELEASE]
at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107) [spring-web-5.0.5.RELEASE.jar!/:5.0.5.RELEASE]
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193) [tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166) [tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.springframework.web.filter.HiddenHttpMethodFilter.doFilterInternal(HiddenHttpMethodFilter.java:81) [spring-web-5.0.5.RELEASE.jar!/:5.0.5.RELEASE]
at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107) [spring-web-5.0.5.RELEASE.jar!/:5.0.5.RELEASE]
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193) [tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166) [tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.springframework.web.filter.CharacterEncodingFilter.doFilterInternal(CharacterEncodingFilter.java:200) [spring-web-5.0.5.RELEASE.jar!/:5.0.5.RELEASE]
at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107) [spring-web-5.0.5.RELEASE.jar!/:5.0.5.RELEASE]
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193) [tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166) [tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:198) [tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:96) [tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:496) [tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:140) [tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:81) [tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:87) [tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:342) [tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.coyote.http11.Http11Processor.service(Http11Processor.java:803) [tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.coyote.AbstractProcessorLight.process(AbstractProcessorLight.java:66) [tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.coyote.AbstractProtocol$ConnectionHandler.process(AbstractProtocol.java:790) [tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.doRun(NioEndpoint.java:1459) [tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.tomcat.util.net.SocketProcessorBase.run(SocketProcessorBase.java:49) [tomcat-embed-core-8.5.29.jar!/:8.5.29]
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) [na:1.8.0_181]
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) [na:1.8.0_181]
at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61) [tomcat-embed-core-8.5.29.jar!/:8.5.29]
at java.lang.Thread.run(Thread.java:748) [na:1.8.0_181]
Caused by: java.io.IOException: org.apache.tomcat.util.http.fileupload.FileUploadBase$IOFileUploadException: Processing of multipart/form-data request failed. Unexpected EOF read on the socket
at org.apache.catalina.connector.Request.parseParts(Request.java:2916) ~[tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.catalina.connector.Request.parseParameters(Request.java:3216) ~[tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.catalina.connector.Request.getParameter(Request.java:1137) ~[tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.catalina.connector.RequestFacade.getParameter(RequestFacade.java:381) ~[tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.springframework.web.filter.HiddenHttpMethodFilter.doFilterInternal(HiddenHttpMethodFilter.java:75) [spring-web-5.0.5.RELEASE.jar!/:5.0.5.RELEASE]
... 23 common frames omitted
Caused by: org.apache.tomcat.util.http.fileupload.FileUploadBase$IOFileUploadException: Processing of multipart/form-data request failed. Unexpected EOF read on the socket
at org.apache.tomcat.util.http.fileupload.FileUploadBase.parseRequest(FileUploadBase.java:297) ~[tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.catalina.connector.Request.parseParts(Request.java:2868) ~[tomcat-embed-core-8.5.29.jar!/:8.5.29]
... 27 common frames omitted
Caused by: java.io.EOFException: Unexpected EOF read on the socket
at org.apache.coyote.http11.Http11InputBuffer.fill(Http11InputBuffer.java:722) ~[tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.coyote.http11.Http11InputBuffer.access$300(Http11InputBuffer.java:40) ~[tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.coyote.http11.Http11InputBuffer$SocketInputBuffer.doRead(Http11InputBuffer.java:1072) ~[tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.coyote.http11.filters.IdentityInputFilter.doRead(IdentityInputFilter.java:140) ~[tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.coyote.http11.Http11InputBuffer.doRead(Http11InputBuffer.java:261) ~[tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.coyote.Request.doRead(Request.java:581) ~[tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.catalina.connector.InputBuffer.realReadBytes(InputBuffer.java:326) ~[tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.catalina.connector.InputBuffer.checkByteBufferEof(InputBuffer.java:642) ~[tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.catalina.connector.InputBuffer.read(InputBuffer.java:349) ~[tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.catalina.connector.CoyoteInputStream.read(CoyoteInputStream.java:183) ~[tomcat-embed-core-8.5.29.jar!/:8.5.29]
at java.io.FilterInputStream.read(FilterInputStream.java:133) ~[na:1.8.0_181]
at org.apache.tomcat.util.http.fileupload.util.LimitedInputStream.read(LimitedInputStream.java:132) ~[tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.tomcat.util.http.fileupload.MultipartStream$ItemInputStream.makeAvailable(MultipartStream.java:977) ~[tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.tomcat.util.http.fileupload.MultipartStream$ItemInputStream.read(MultipartStream.java:881) ~[tomcat-embed-core-8.5.29.jar!/:8.5.29]
at java.io.FilterInputStream.read(FilterInputStream.java:133) ~[na:1.8.0_181]
at org.apache.tomcat.util.http.fileupload.util.LimitedInputStream.read(LimitedInputStream.java:132) ~[tomcat-embed-core-8.5.29.jar!/:8.5.29]
at java.io.FilterInputStream.read(FilterInputStream.java:107) ~[na:1.8.0_181]
at org.apache.tomcat.util.http.fileupload.util.Streams.copy(Streams.java:98) ~[tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.tomcat.util.http.fileupload.util.Streams.copy(Streams.java:68) ~[tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.tomcat.util.http.fileupload.FileUploadBase.parseRequest(FileUploadBase.java:293) ~[tomcat-embed-core-8.5.29.jar!/:8.5.29]
... 28 common frames omitted
2018-11-22 06:21:59.304 INFO 2003 --- [pool-2-thread-1] o.s.s.core.rf2.rf2import.ImportService : Starting RF2 FULL import on branch MAIN. ID 48a50848-7486-47cf-8d68-0ed3e1dacdea
2018-11-22 06:21:59.984 INFO 2003 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Unzipping file to /tmp/temp-rf2-unzip9066621543440484616/Full
2018-11-22 06:21:59.984 INFO 2003 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Unzipping file to /tmp/temp-rf2-unzip9066621543440484616/Terminology
2018-11-22 06:21:59.984 INFO 2003 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Unzipping file to /tmp/temp-rf2-unzip9066621543440484616/sct2_Concept_Full_INT_20180731.txt
2018-11-22 06:22:00.124 INFO 2003 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Unzipping file to /tmp/temp-rf2-unzip9066621543440484616/sct2_Description_Full-en_INT_20180731.txt
2018-11-22 06:22:02.599 INFO 2003 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Unzipping file to /tmp/temp-rf2-unzip9066621543440484616/sct2_StatedRelationship_Full_INT_20180731.txt
2018-11-22 06:22:03.539 INFO 2003 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Unzipping file to /tmp/temp-rf2-unzip9066621543440484616/sct2_Relationship_Full_INT_20180731.txt
2018-11-22 06:22:08.742 INFO 2003 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Unzipping file to /tmp/temp-rf2-unzip9066621543440484616/sct2_Identifier_Full_INT_20180731.txt
2018-11-22 06:22:08.748 INFO 2003 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Unzipping file to /tmp/temp-rf2-unzip9066621543440484616/sct2_TextDefinition_Full-en_INT_20180731.txt
2018-11-22 06:22:08.763 INFO 2003 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Unzipping file to /tmp/temp-rf2-unzip9066621543440484616/sct2_sRefset_OWLOntologyFull_INT_20180731.txt
2018-11-22 06:22:08.763 INFO 2003 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Unzipping file to /tmp/temp-rf2-unzip9066621543440484616/sct2_sRefset_OWLAxiomFull_INT_20180731.txt
2018-11-22 06:22:08.764 INFO 2003 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Unzipping file to /tmp/temp-rf2-unzip9066621543440484616/Refset
2018-11-22 06:22:08.764 INFO 2003 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Unzipping file to /tmp/temp-rf2-unzip9066621543440484616/Content
2018-11-22 06:22:08.764 INFO 2003 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Unzipping file to /tmp/temp-rf2-unzip9066621543440484616/der2_cRefset_AssociationFull_INT_20180731.txt
2018-11-22 06:22:08.896 INFO 2003 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Unzipping file to /tmp/temp-rf2-unzip9066621543440484616/der2_cRefset_AttributeValueFull_INT_20180731.txt
2018-11-22 06:22:09.466 INFO 2003 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Unzipping file to /tmp/temp-rf2-unzip9066621543440484616/der2_Refset_SimpleFull_INT_20180731.txt
2018-11-22 06:22:09.477 INFO 2003 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Unzipping file to /tmp/temp-rf2-unzip9066621543440484616/Map
2018-11-22 06:22:09.477 INFO 2003 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Unzipping file to /tmp/temp-rf2-unzip9066621543440484616/der2_sRefset_SimpleMapFull_INT_20180731.txt
2018-11-22 06:22:09.883 INFO 2003 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Unzipping file to /tmp/temp-rf2-unzip9066621543440484616/der2_iisssccRefset_ExtendedMapFull_INT_20180731.txt
2018-11-22 06:22:10.155 INFO 2003 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Unzipping file to /tmp/temp-rf2-unzip9066621543440484616/Language
2018-11-22 06:22:10.155 INFO 2003 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Unzipping file to /tmp/temp-rf2-unzip9066621543440484616/der2_cRefset_LanguageFull-en_INT_20180731.txt
____ _
__/\__ / ___| _ __ _____ _____| |_ ___ _ __ _ __ ___
\ / \___ \| '_ \ / _ \ \ /\ / / __| __/ _ \| '__| '_ ` _ \
/_ _\ ___) | | | | (_) \ V V /\__ \ || (_) | | | | | | | |
\/ |____/|_| |_|\___/ \_/\_/ |___/\__\___/|_| |_| |_| |_|
===============================================================
:: Snowstorm, SNOMED CT Terminology Server :: (v2.1.1-SNAPSHOT)
2018-11-22 06:22:34.627 INFO 2123 --- [ main] org.snomed.snowstorm.App : Starting App v2.1.1-SNAPSHOT on ip-10-0-13-236 with PID 2123 (/home/rda/snowstorm-2.1.1-SNAPSHOT.jar started by root in /home/rda)
2018-11-22 06:22:34.634 INFO 2123 --- [ main] org.snomed.snowstorm.App : No active profile set, falling back to default profiles: default
2018-11-22 06:22:34.762 INFO 2123 --- [ main] ConfigServletWebServerApplicationContext : Refreshing org.springframework.boot.web.servlet.context.AnnotationConfigServletWebServerApplicationContext@de0a01f: startup date [Thu Nov 22 06:22:34 UTC 2018]; root of context hierarchy
2018-11-22 06:22:36.140 INFO 2123 --- [ main] o.s.b.f.s.DefaultListableBeanFactory : Overriding bean definition for bean 'domainEntityConfiguration' with a different definition: replacing [Generic bean: class [org.snomed.snowstorm.core.data.services.DomainEntityConfiguration]; scope=singleton; abstract=false; lazyInit=false; autowireMode=0; dependencyCheck=0; autowireCandidate=true; primary=false; factoryBeanName=null; factoryMethodName=null; initMethodName=null; destroyMethodName=null; defined in URL [jar:file:/home/rda/snowstorm-2.1.1-SNAPSHOT.jar!/BOOT-INF/classes!/org/snomed/snowstorm/core/data/services/DomainEntityConfiguration.class]] with [Root bean: class [null]; scope=; abstract=false; lazyInit=false; autowireMode=3; dependencyCheck=0; autowireCandidate=true; primary=false; factoryBeanName=app; factoryMethodName=domainEntityConfiguration; initMethodName=null; destroyMethodName=(inferred); defined in org.snomed.snowstorm.App]
2018-11-22 06:22:36.779 INFO 2123 --- [ main] f.a.AutowiredAnnotationBeanPostProcessor : JSR-330 'javax.inject.Inject' annotation found and supported for autowiring
2018-11-22 06:22:37.423 INFO 2123 --- [ main] o.s.b.w.embedded.tomcat.TomcatWebServer : Tomcat initialized with port(s): 8080 (http)
2018-11-22 06:22:37.454 INFO 2123 --- [ main] o.apache.catalina.core.StandardService : Starting service [Tomcat]
2018-11-22 06:22:37.454 INFO 2123 --- [ main] org.apache.catalina.core.StandardEngine : Starting Servlet Engine: Apache Tomcat/8.5.29
2018-11-22 06:22:37.465 INFO 2123 --- [ost-startStop-1] o.a.catalina.core.AprLifecycleListener : The APR based Apache Tomcat Native library which allows optimal performance in production environments was not found on the java.library.path: [/usr/java/packages/lib/amd64:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib]
2018-11-22 06:22:37.630 INFO 2123 --- [ost-startStop-1] o.a.c.c.C.[Tomcat].[localhost].[/] : Initializing Spring embedded WebApplicationContext
2018-11-22 06:22:37.631 INFO 2123 --- [ost-startStop-1] o.s.web.context.ContextLoader : Root WebApplicationContext: initialization completed in 2873 ms
2018-11-22 06:22:39.652 INFO 2123 --- [heManagerDaemon] o.s.s.c.d.s.i.IdentifierCacheManager : Identifier cache manager polling commencing with 10 second period.
2018-11-22 06:22:39.654 INFO 2123 --- [heManagerDaemon] o.s.s.c.d.s.i.IdentifierCacheManager : Topping up IdCache(0 - 00) by 1000
2018-11-22 06:22:39.674 INFO 2123 --- [heManagerDaemon] o.s.s.c.d.s.i.IdentifierCacheManager : Top up of IdCache(0 - 00) by 1000 complete
2018-11-22 06:22:39.675 INFO 2123 --- [heManagerDaemon] o.s.s.c.d.s.i.IdentifierCacheManager : Topping up IdCache(0 - 02) by 4000
2018-11-22 06:22:39.690 INFO 2123 --- [heManagerDaemon] o.s.s.c.d.s.i.IdentifierCacheManager : Top up of IdCache(0 - 02) by 4000 complete
2018-11-22 06:22:39.690 INFO 2123 --- [heManagerDaemon] o.s.s.c.d.s.i.IdentifierCacheManager : Topping up IdCache(0 - 01) by 2000
2018-11-22 06:22:39.697 INFO 2123 --- [heManagerDaemon] o.s.s.c.d.s.i.IdentifierCacheManager : Top up of IdCache(0 - 01) by 2000 complete
2018-11-22 06:22:40.087 INFO 2123 --- [ost-startStop-1] ca.uhn.fhir.util.VersionUtil : HAPI FHIR version is: 3.2.0
2018-11-22 06:22:40.335 INFO 2123 --- [ost-startStop-1] o.s.b.w.servlet.FilterRegistrationBean : Mapping filter: 'characterEncodingFilter' to: [/*]
2018-11-22 06:22:40.336 INFO 2123 --- [ost-startStop-1] o.s.b.w.servlet.FilterRegistrationBean : Mapping filter: 'hiddenHttpMethodFilter' to: [/*]
2018-11-22 06:22:40.336 INFO 2123 --- [ost-startStop-1] o.s.b.w.servlet.FilterRegistrationBean : Mapping filter: 'httpPutFormContentFilter' to: [/*]
2018-11-22 06:22:40.336 INFO 2123 --- [ost-startStop-1] o.s.b.w.servlet.FilterRegistrationBean : Mapping filter: 'requestContextFilter' to: [/*]
2018-11-22 06:22:40.336 INFO 2123 --- [ost-startStop-1] .s.DelegatingFilterProxyRegistrationBean : Mapping filter: 'springSecurityFilterChain' to: [/*]
2018-11-22 06:22:40.337 INFO 2123 --- [ost-startStop-1] o.s.b.w.servlet.FilterRegistrationBean : Mapping filter: 'requestHeaderAuthenticationDecorator' to: [/*]
2018-11-22 06:22:40.337 INFO 2123 --- [ost-startStop-1] o.s.b.w.servlet.FilterRegistrationBean : Mapping filter: 'requestHeaderAuthenticationDecoratorWithRequiredRole' to: [/*]
2018-11-22 06:22:40.337 INFO 2123 --- [ost-startStop-1] o.s.b.w.servlet.FilterRegistrationBean : Mapping filter: 'branchPathUriRewriteFilter' to: [/*]
2018-11-22 06:22:40.337 INFO 2123 --- [ost-startStop-1] o.s.b.w.servlet.ServletRegistrationBean : Servlet hapiRestfulServlet mapped to [/fhir/*]
2018-11-22 06:22:40.339 INFO 2123 --- [ost-startStop-1] o.s.b.w.servlet.ServletRegistrationBean : Servlet dispatcherServlet mapped to [/]
2018-11-22 06:22:40.587 ERROR 2123 --- [ main] org.ihtsdo.drools.RuleExecutor : Rules directory does not exist: /opt/snowstorm/snomed-drools-rules
2018-11-22 06:22:41.323 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/reviews],methods=[POST],produces=[application/json]}" onto public org.springframework.http.ResponseEntity<java.lang.Void> org.snomed.snowstorm.rest.BranchController.createBranchReview(org.snomed.snowstorm.rest.pojo.CreateReviewRequest)
2018-11-22 06:22:41.325 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/merge-reviews],methods=[POST],produces=[application/json]}" onto public org.springframework.http.ResponseEntity<java.lang.Void> org.snomed.snowstorm.rest.BranchController.createMergeReview(org.snomed.snowstorm.rest.pojo.CreateReviewRequest)
2018-11-22 06:22:41.325 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/merge-reviews/{id}],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.core.data.domain.review.MergeReview org.snomed.snowstorm.rest.BranchController.getMergeReview(java.lang.String)
2018-11-22 06:22:41.326 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/merge-reviews/{id}/details],methods=[GET],produces=[application/json]}" onto public java.util.Collection<org.snomed.snowstorm.core.data.domain.review.MergeReviewConceptVersions> org.snomed.snowstorm.rest.BranchController.getMergeReviewConflictingConcepts(java.lang.String,java.lang.String)
2018-11-22 06:22:41.326 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/merge-reviews/{id}/{conceptId}],methods=[POST],produces=[application/json]}" onto public void org.snomed.snowstorm.rest.BranchController.getMergeReviewConflictingConcepts(java.lang.String,java.lang.String,org.snomed.snowstorm.core.data.domain.Concept)
2018-11-22 06:22:41.326 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/merges/{mergeId}],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.core.data.domain.BranchMergeJob org.snomed.snowstorm.rest.BranchController.retrieveMerge(java.lang.String)
2018-11-22 06:22:41.327 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/integrity-check],methods=[POST],produces=[application/json]}" onto public org.snomed.snowstorm.core.data.services.pojo.IntegrityIssueReport org.snomed.snowstorm.rest.BranchController.integrityCheck(java.lang.String)
2018-11-22 06:22:41.327 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/merge-reviews/{id}/apply],methods=[POST],produces=[application/json]}" onto public void org.snomed.snowstorm.rest.BranchController.applyMergeReview(java.lang.String) throws org.snomed.snowstorm.core.data.services.ServiceException
2018-11-22 06:22:41.328 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/merges],methods=[POST],produces=[application/json]}" onto public org.springframework.http.ResponseEntity<java.lang.Void> org.snomed.snowstorm.rest.BranchController.mergeBranch(org.snomed.snowstorm.rest.pojo.MergeRequest)
2018-11-22 06:22:41.328 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/reviews/{id}],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.core.data.domain.review.BranchReview org.snomed.snowstorm.rest.BranchController.getBranchReview(java.lang.String)
2018-11-22 06:22:41.328 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/reviews/{id}/concept-changes],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.core.data.domain.review.BranchReviewConceptChanges org.snomed.snowstorm.rest.BranchController.getBranchReviewConceptChanges(java.lang.String)
2018-11-22 06:22:41.329 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/branches/{path}],methods=[PUT],produces=[application/json]}" onto public org.snomed.snowstorm.rest.pojo.BranchPojo org.snomed.snowstorm.rest.BranchController.updateBranch(java.lang.String,org.snomed.snowstorm.rest.pojo.UpdateBranchRequest) throws com.fasterxml.jackson.core.JsonProcessingException
2018-11-22 06:22:41.329 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/integrity-check-full],methods=[POST],produces=[application/json]}" onto public org.snomed.snowstorm.core.data.services.pojo.IntegrityIssueReport org.snomed.snowstorm.rest.BranchController.fullIntegrityCheck(java.lang.String)
2018-11-22 06:22:41.330 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/branches],methods=[POST],produces=[application/json]}" onto public org.snomed.snowstorm.rest.pojo.BranchPojo org.snomed.snowstorm.rest.BranchController.createBranch(org.snomed.snowstorm.rest.pojo.CreateBranchRequest)
2018-11-22 06:22:41.330 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/branches/{path}],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.rest.pojo.BranchPojo org.snomed.snowstorm.rest.BranchController.retrieveBranch(java.lang.String,boolean)
2018-11-22 06:22:41.330 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/branches/{path}/actions/unlock],methods=[POST],produces=[application/json]}" onto public void org.snomed.snowstorm.rest.BranchController.unlockBranch(java.lang.String)
2018-11-22 06:22:41.331 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/branches],methods=[GET],produces=[application/json]}" onto public java.util.List<io.kaicode.elasticvc.domain.Branch> org.snomed.snowstorm.rest.BranchController.retrieveAllBranches()
2018-11-22 06:22:41.333 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/imports],methods=[POST],produces=[application/json]}" onto public org.springframework.http.ResponseEntity<java.lang.Void> org.snomed.snowstorm.rest.ImportController.createImportJob(org.snomed.snowstorm.rest.pojo.ImportCreationRequest)
2018-11-22 06:22:41.333 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/imports/{importId}],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.core.rf2.rf2import.ImportJob org.snomed.snowstorm.rest.ImportController.getImportJob(java.lang.String)
2018-11-22 06:22:41.334 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/imports/release-patch],methods=[POST],produces=[application/json]}" onto public org.springframework.http.ResponseEntity<java.lang.Void> org.snomed.snowstorm.rest.ImportController.createReleasePatchImportJob(org.snomed.snowstorm.rest.pojo.ImportPatchCreationRequest)
2018-11-22 06:22:41.334 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/imports/{importId}/archive],methods=[POST],consumes=[multipart/form-data],produces=[application/json]}" onto public void org.snomed.snowstorm.rest.ImportController.uploadImportRf2Archive(java.lang.String,org.springframework.web.multipart.MultipartFile)
2018-11-22 06:22:41.335 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/exports/{exportId}],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.core.data.domain.jobs.ExportConfiguration org.snomed.snowstorm.rest.ExportController.getExportJob(java.lang.String)
2018-11-22 06:22:41.336 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/exports/{exportId}/archive],methods=[GET],produces=[application/zip]}" onto public void org.snomed.snowstorm.rest.ExportController.downloadRf2Archive(java.lang.String,javax.servlet.http.HttpServletResponse) throws java.io.IOException
2018-11-22 06:22:41.336 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/exports],methods=[POST],produces=[application/json]}" onto public org.springframework.http.ResponseEntity<java.lang.Void> org.snomed.snowstorm.rest.ExportController.createExportJob(org.snomed.snowstorm.core.data.domain.jobs.ExportConfiguration)
2018-11-22 06:22:41.337 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/codesystems],methods=[POST],produces=[application/json]}" onto public org.springframework.http.ResponseEntity<java.lang.Void> org.snomed.snowstorm.rest.CodeSystemController.createCodeSystem(org.snomed.snowstorm.core.data.domain.CodeSystem)
2018-11-22 06:22:41.338 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/codesystems/{shortName}/migrate],methods=[POST],produces=[application/json]}" onto public void org.snomed.snowstorm.rest.CodeSystemController.migrateCodeSystem(java.lang.String,org.snomed.snowstorm.rest.pojo.CodeSystemMigrationRequest)
2018-11-22 06:22:41.338 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/codesystems],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.rest.pojo.ItemsPage<org.snomed.snowstorm.core.data.domain.CodeSystem> org.snomed.snowstorm.rest.CodeSystemController.findAll()
2018-11-22 06:22:41.339 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/codesystems/{shortName}],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.core.data.domain.CodeSystem org.snomed.snowstorm.rest.CodeSystemController.findCodeSystem(java.lang.String)
2018-11-22 06:22:41.339 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/codesystems/{shortName}/versions],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.rest.pojo.ItemsPage<org.snomed.snowstorm.core.data.domain.CodeSystemVersion> org.snomed.snowstorm.rest.CodeSystemController.findAllVersions(java.lang.String)
2018-11-22 06:22:41.339 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/codesystems/{shortName}/versions],methods=[POST],produces=[application/json]}" onto public org.springframework.http.ResponseEntity<java.lang.Void> org.snomed.snowstorm.rest.CodeSystemController.createVersion(java.lang.String,org.snomed.snowstorm.rest.pojo.CreateCodeSystemVersionRequest)
2018-11-22 06:22:41.340 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/version],methods=[GET]}" onto public org.snomed.snowstorm.rest.pojo.BuildVersion org.snomed.snowstorm.rest.VersionController.getBuildInformation()
2018-11-22 06:22:41.343 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/browser/{branch}/concepts/bulk],methods=[POST],produces=[application/json]}" onto public org.springframework.http.ResponseEntity org.snomed.snowstorm.rest.ConceptController.createConceptBulkChange(java.lang.String,java.util.List<org.snomed.snowstorm.core.data.domain.ConceptView>,org.springframework.web.util.UriComponentsBuilder)
2018-11-22 06:22:41.344 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/browser/{branch}/concepts/bulk/{bulkChangeId}],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.core.data.services.pojo.AsyncConceptChangeBatch org.snomed.snowstorm.rest.ConceptController.getConceptBulkChange(java.lang.String,java.lang.String)
2018-11-22 06:22:41.344 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/browser/{branch}/concepts/{conceptId}/children],methods=[GET],produces=[application/json]}" onto public java.util.Collection<org.snomed.snowstorm.core.data.domain.ConceptMini> org.snomed.snowstorm.rest.ConceptController.findConceptChildren(java.lang.String,java.lang.String,org.snomed.snowstorm.core.data.domain.Relationship$CharacteristicType,java.lang.String)
2018-11-22 06:22:41.345 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/browser/{branch}/concepts/{conceptId}/parents],methods=[GET],produces=[application/json]}" onto public java.util.Collection<org.snomed.snowstorm.core.data.domain.ConceptMini> org.snomed.snowstorm.rest.ConceptController.findConceptParents(java.lang.String,java.lang.String,org.snomed.snowstorm.core.data.domain.Relationship$CharacteristicType,java.lang.String)
2018-11-22 06:22:41.345 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/browser/{branch}/concepts/{conceptId}/ancestors],methods=[GET],produces=[application/json]}" onto public java.util.Collection<org.snomed.snowstorm.core.data.domain.ConceptMini> org.snomed.snowstorm.rest.ConceptController.findConceptAncestors(java.lang.String,java.lang.String,org.snomed.snowstorm.core.data.domain.Relationship$CharacteristicType,java.lang.String)
2018-11-22 06:22:41.346 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/rebuild/{branch}],methods=[POST],produces=[application/json]}" onto public void org.snomed.snowstorm.rest.ConceptController.rebuildBranchTransitiveClosure(java.lang.String) throws org.snomed.otf.owltoolkit.conversion.ConversionException
2018-11-22 06:22:41.346 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/concepts/{conceptId}/authoring-form],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.core.data.domain.expression.Expression org.snomed.snowstorm.rest.ConceptController.getConceptAuthoringForm(java.lang.String,java.lang.String,java.lang.String)
2018-11-22 06:22:41.346 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/browser/{branch}/concepts/bulk-load],methods=[POST],produces=[application/json]}" onto public java.util.Collection<org.snomed.snowstorm.core.data.domain.Concept> org.snomed.snowstorm.rest.ConceptController.getBrowserConcepts(java.lang.String,org.snomed.snowstorm.rest.pojo.ConceptIdsPojo,java.lang.String)
2018-11-22 06:22:41.347 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/browser/{branch}/concepts],methods=[GET],produces=[application/json]}" onto public org.springframework.data.domain.Page<? extends org.snomed.snowstorm.core.data.domain.ConceptView> org.snomed.snowstorm.rest.ConceptController.getBrowserConcepts(java.lang.String,int,int,java.lang.String)
2018-11-22 06:22:41.347 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/browser/{branch}/concepts/{conceptId}],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.core.data.domain.ConceptView org.snomed.snowstorm.rest.ConceptController.findBrowserConcept(java.lang.String,java.lang.String,java.lang.String)
2018-11-22 06:22:41.347 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/concepts/{conceptId}/descriptions],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.rest.pojo.ConceptDescriptionsResult org.snomed.snowstorm.rest.ConceptController.findConceptDescriptions(java.lang.String,java.lang.String,java.lang.String)
2018-11-22 06:22:41.348 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/concepts/{conceptId}/descendants],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.rest.pojo.ItemsPage<org.snomed.snowstorm.core.data.domain.ConceptMini> org.snomed.snowstorm.rest.ConceptController.findConceptDescendants(java.lang.String,java.lang.String,boolean,int,int,java.lang.String)
2018-11-22 06:22:41.348 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/concepts/{conceptId}/inbound-relationships],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.rest.pojo.InboundRelationshipsResult org.snomed.snowstorm.rest.ConceptController.findConceptInboundRelationships(java.lang.String,java.lang.String)
2018-11-22 06:22:41.348 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/browser/{branch}/concepts/{conceptId}],methods=[PUT],produces=[application/json]}" onto public org.snomed.snowstorm.core.data.domain.ConceptView org.snomed.snowstorm.rest.ConceptController.updateConcept(java.lang.String,java.lang.String,org.snomed.snowstorm.core.data.domain.ConceptView,java.lang.String) throws org.snomed.snowstorm.core.data.services.ServiceException
2018-11-22 06:22:41.349 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/browser/{branch}/concepts],methods=[POST],produces=[application/json]}" onto public org.snomed.snowstorm.core.data.domain.ConceptView org.snomed.snowstorm.rest.ConceptController.createConcept(java.lang.String,org.snomed.snowstorm.core.data.domain.ConceptView,java.lang.String) throws org.snomed.snowstorm.core.data.services.ServiceException
2018-11-22 06:22:41.349 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/concepts/{conceptId}],methods=[DELETE],produces=[application/json]}" onto public void org.snomed.snowstorm.rest.ConceptController.deleteConcept(java.lang.String,java.lang.String)
2018-11-22 06:22:41.349 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/concepts/{conceptId}],methods=[GET],produces=[application/json || text/csv]}" onto public org.snomed.snowstorm.core.data.domain.ConceptMini org.snomed.snowstorm.rest.ConceptController.findConcept(java.lang.String,java.lang.String,java.lang.String)
2018-11-22 06:22:41.350 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/concepts],methods=[GET],produces=[application/json || text/csv]}" onto public org.snomed.snowstorm.rest.pojo.ItemsPage<org.snomed.snowstorm.core.data.domain.ConceptMini> org.snomed.snowstorm.rest.ConceptController.findConcepts(java.lang.String,java.lang.Boolean,java.lang.String,java.lang.String,java.lang.String,java.lang.String,java.lang.String,java.util.Set<java.lang.String>,int,int,java.lang.String)
2018-11-22 06:22:41.350 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/concepts/search],methods=[POST],produces=[application/json || text/csv]}" onto public org.snomed.snowstorm.rest.pojo.ItemsPage<org.snomed.snowstorm.core.data.domain.ConceptMini> org.snomed.snowstorm.rest.ConceptController.search(java.lang.String,org.snomed.snowstorm.rest.pojo.ConceptSearchRequest,java.lang.String)
2018-11-22 06:22:41.351 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/relationships],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.rest.pojo.ItemsPage<org.snomed.snowstorm.core.data.domain.Relationship> org.snomed.snowstorm.rest.RelationshipController.findRelationships(java.lang.String,java.lang.Boolean,java.lang.String,java.lang.String,java.lang.String,java.lang.String,java.lang.String,org.snomed.snowstorm.rest.RelationshipController$RelationshipCharacteristicType,java.lang.Integer,int,int,java.lang.String)
2018-11-22 06:22:41.352 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/relationships/{relationshipId}],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.core.data.domain.Relationship org.snomed.snowstorm.rest.RelationshipController.fetchRelationship(java.lang.String,java.lang.String,java.lang.String)
2018-11-22 06:22:41.353 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/mrcm/reload],methods=[POST],consumes=[multipart/form-data],produces=[application/json]}" onto public void org.snomed.snowstorm.rest.MRCMController.reloadMrcm() throws org.snomed.snowstorm.core.data.services.ServiceException
2018-11-22 06:22:41.353 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/mrcm/{path}/domain-attributes],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.rest.pojo.ItemsPage<org.snomed.snowstorm.core.data.domain.ConceptMini> org.snomed.snowstorm.rest.MRCMController.retrieveDomainAttributes(java.lang.String,java.util.Set<java.lang.Long>,java.lang.String)
2018-11-22 06:22:41.353 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/mrcm/{path}/attribute-values/{attributeId}],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.rest.pojo.ItemsPage<org.snomed.snowstorm.core.data.domain.ConceptMini> org.snomed.snowstorm.rest.MRCMController.retrieveAttributeValues(java.lang.String,java.lang.String,java.lang.String,java.lang.String)
2018-11-22 06:22:41.354 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/members],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.rest.pojo.ItemsPage<org.snomed.snowstorm.core.data.domain.ReferenceSetMember> org.snomed.snowstorm.rest.ReferenceSetMemberController.findRefsetMembers(java.lang.String,java.lang.String,java.lang.String,java.lang.Boolean,java.lang.String,java.lang.String,int,int,java.lang.String)
2018-11-22 06:22:41.355 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/members/{uuid}],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.core.data.domain.ReferenceSetMember org.snomed.snowstorm.rest.ReferenceSetMemberController.fetchMember(java.lang.String,java.lang.String,java.lang.String)
2018-11-22 06:22:41.356 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/members/{uuid}],methods=[DELETE],produces=[application/json]}" onto public void org.snomed.snowstorm.rest.ReferenceSetMemberController.deleteMember(java.lang.String,java.lang.String)
2018-11-22 06:22:41.357 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/browser/{branch}/validate/concept],methods=[POST],produces=[application/json]}" onto public java.util.List<org.ihtsdo.drools.response.InvalidContent> org.snomed.snowstorm.rest.ConceptValidationController.validateConcept(java.lang.String,org.snomed.snowstorm.core.data.domain.Concept) throws org.snomed.snowstorm.core.data.services.ServiceException
2018-11-22 06:22:41.357 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/browser/{branch}/validate/concepts],methods=[POST],produces=[application/json]}" onto public java.util.List<org.ihtsdo.drools.response.InvalidContent> org.snomed.snowstorm.rest.ConceptValidationController.validateConcepts(java.lang.String,java.util.Set<org.snomed.snowstorm.core.data.domain.Concept>) throws org.snomed.snowstorm.core.data.services.ServiceException
2018-11-22 06:22:41.358 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/authoring-mirror/activities],methods=[POST],produces=[application/json]}" onto public void org.snomed.snowstorm.rest.AuthoringMirrorController.mirrorAuthoring(org.springframework.web.multipart.MultipartFile) throws java.io.IOException,org.snomed.snowstorm.core.data.services.ServiceException
2018-11-22 06:22:41.359 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/classifications/{classificationId}/equivalent-concepts],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.rest.pojo.ItemsPage<org.snomed.snowstorm.core.data.services.classification.pojo.EquivalentConceptsResponse> org.snomed.snowstorm.rest.ClassificationController.getEquivalentConcepts(java.lang.String,java.lang.String,int,int,java.lang.String)
2018-11-22 06:22:41.360 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/classifications/{classificationId}/concept-preview/{conceptId}],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.core.data.domain.ConceptView org.snomed.snowstorm.rest.ClassificationController.getConceptPreview(java.lang.String,java.lang.String,java.lang.String,java.lang.String)
2018-11-22 06:22:41.360 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/classifications/{classificationId}],methods=[PUT],produces=[application/json]}" onto public void org.snomed.snowstorm.rest.ClassificationController.updateClassification(java.lang.String,java.lang.String,org.snomed.snowstorm.rest.pojo.ClassificationUpdateRequest)
2018-11-22 06:22:41.360 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/classifications],methods=[POST],produces=[application/json]}" onto public org.springframework.http.ResponseEntity org.snomed.snowstorm.rest.ClassificationController.createClassification(java.lang.String,java.lang.String,org.springframework.web.util.UriComponentsBuilder) throws org.snomed.snowstorm.core.data.services.ServiceException
2018-11-22 06:22:41.360 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/classifications],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.rest.pojo.ItemsPage<org.snomed.snowstorm.core.data.domain.classification.Classification> org.snomed.snowstorm.rest.ClassificationController.findClassifications(java.lang.String)
2018-11-22 06:22:41.361 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/classifications/{classificationId}],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.core.data.domain.classification.Classification org.snomed.snowstorm.rest.ClassificationController.findClassification(java.lang.String,java.lang.String)
2018-11-22 06:22:41.361 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/classifications/{classificationId}/relationship-changes],methods=[GET],produces=[application/json || text/csv]}" onto public org.snomed.snowstorm.rest.pojo.ItemsPage<org.snomed.snowstorm.core.data.domain.classification.RelationshipChange> org.snomed.snowstorm.rest.ClassificationController.getRelationshipChanges(java.lang.String,java.lang.String,int,int,java.lang.String)
2018-11-22 06:22:41.362 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/],methods=[GET]}" onto public void org.snomed.snowstorm.rest.RootController.getRoot(javax.servlet.http.HttpServletResponse) throws java.io.IOException
2018-11-22 06:22:41.362 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/descriptions/{descriptionId}],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.core.data.domain.Description org.snomed.snowstorm.rest.DescriptionController.fetchDescription(java.lang.String,java.lang.String)
2018-11-22 06:22:41.363 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/{branch}/descriptions],methods=[GET],produces=[application/json]}" onto public org.snomed.snowstorm.rest.pojo.ItemsPage<org.snomed.snowstorm.core.data.domain.Description> org.snomed.snowstorm.rest.DescriptionController.findDescriptions(java.lang.String,java.lang.String,int,int,java.lang.String)
2018-11-22 06:22:41.363 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/browser/{branch}/descriptions],methods=[GET],produces=[application/json]}" onto public org.springframework.data.domain.Page<org.snomed.snowstorm.rest.pojo.BrowserDescriptionSearchResult> org.snomed.snowstorm.rest.DescriptionController.findBrowserDescriptions(java.lang.String,java.lang.String,java.lang.Boolean,java.lang.String,int,int,java.lang.String)
2018-11-22 06:22:41.364 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/v2/api-docs],methods=[GET],produces=[application/json || application/hal+json]}" onto public org.springframework.http.ResponseEntity<springfox.documentation.spring.web.json.Json> springfox.documentation.swagger2.web.Swagger2Controller.getDocumentation(java.lang.String,javax.servlet.http.HttpServletRequest)
2018-11-22 06:22:41.368 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/swagger-resources/configuration/security]}" onto org.springframework.http.ResponseEntity<springfox.documentation.swagger.web.SecurityConfiguration> springfox.documentation.swagger.web.ApiResourceController.securityConfiguration()
2018-11-22 06:22:41.369 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/swagger-resources]}" onto org.springframework.http.ResponseEntity<java.util.List<springfox.documentation.swagger.web.SwaggerResource>> springfox.documentation.swagger.web.ApiResourceController.swaggerResources()
2018-11-22 06:22:41.370 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/swagger-resources/configuration/ui]}" onto org.springframework.http.ResponseEntity<springfox.documentation.swagger.web.UiConfiguration> springfox.documentation.swagger.web.ApiResourceController.uiConfiguration()
2018-11-22 06:22:41.374 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/error],produces=[text/html]}" onto public org.springframework.web.servlet.ModelAndView org.springframework.boot.autoconfigure.web.servlet.error.BasicErrorController.errorHtml(javax.servlet.http.HttpServletRequest,javax.servlet.http.HttpServletResponse)
2018-11-22 06:22:41.375 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerMapping : Mapped "{[/error]}" onto public org.springframework.http.ResponseEntity<java.util.Map<java.lang.String, java.lang.Object>> org.springframework.boot.autoconfigure.web.servlet.error.BasicErrorController.error(javax.servlet.http.HttpServletRequest)
2018-11-22 06:22:41.901 INFO 2123 --- [ main] o.s.s.web.DefaultSecurityFilterChain : Creating filter chain: org.springframework.security.web.util.matcher.AnyRequestMatcher@1, [org.springframework.security.web.context.request.async.WebAsyncManagerIntegrationFilter@5852c06f, org.springframework.security.web.context.SecurityContextPersistenceFilter@7ac296f6, org.springframework.security.web.header.HeaderWriterFilter@2f01783a, org.springframework.security.web.authentication.logout.LogoutFilter@4e0ae11f, org.springframework.security.web.savedrequest.RequestCacheAwareFilter@22f59fa, org.springframework.security.web.servletapi.SecurityContextHolderAwareRequestFilter@54e041a4, org.springframework.security.web.authentication.AnonymousAuthenticationFilter@4149c063, org.springframework.security.web.session.SessionManagementFilter@41488b16, org.springframework.security.web.access.ExceptionTranslationFilter@74287ea3]
2018-11-22 06:22:42.115 INFO 2123 --- [ main] o.s.w.s.handler.SimpleUrlHandlerMapping : Mapped URL path [/**/favicon.ico] onto handler of type [class org.springframework.web.servlet.resource.ResourceHttpRequestHandler]
2018-11-22 06:22:42.344 INFO 2123 --- [ main] s.w.s.m.m.a.RequestMappingHandlerAdapter : Looking for @ControllerAdvice: org.springframework.boot.web.servlet.context.AnnotationConfigServletWebServerApplicationContext@de0a01f: startup date [Thu Nov 22 06:22:34 UTC 2018]; root of context hierarchy
2018-11-22 06:22:42.710 INFO 2123 --- [ main] o.s.w.s.handler.SimpleUrlHandlerMapping : Mapped URL path [/webjars/**] onto handler of type [class org.springframework.web.servlet.resource.ResourceHttpRequestHandler]
2018-11-22 06:22:42.710 INFO 2123 --- [ main] o.s.w.s.handler.SimpleUrlHandlerMapping : Mapped URL path [/**] onto handler of type [class org.springframework.web.servlet.resource.ResourceHttpRequestHandler]
2018-11-22 06:22:42.736 INFO 2123 --- [ main] .m.m.a.ExceptionHandlerExceptionResolver : Detected @ExceptionHandler methods in restControllerAdvice
2018-11-22 06:22:43.178 INFO 2123 --- [ main] o.s.j.e.a.AnnotationMBeanExporter : Registering beans for JMX exposure on startup
2018-11-22 06:22:43.189 INFO 2123 --- [ main] o.s.c.support.DefaultLifecycleProcessor : Starting beans in phase 2147483647
2018-11-22 06:22:43.189 INFO 2123 --- [ main] d.s.w.p.DocumentationPluginsBootstrapper : Context refreshed
2018-11-22 06:22:43.207 INFO 2123 --- [ main] d.s.w.p.DocumentationPluginsBootstrapper : Found 1 custom documentation plugin(s)
2018-11-22 06:22:43.222 INFO 2123 --- [ main] s.d.s.w.s.ApiListingReferenceScanner : Scanning for api listing references
2018-11-22 06:22:44.106 INFO 2123 --- [ main] o.apache.activemq.broker.BrokerService : Using Persistence Adapter: MemoryPersistenceAdapter
2018-11-22 06:22:44.145 INFO 2123 --- [ JMX connector] o.a.a.broker.jmx.ManagementContext : JMX consoles can connect to service:jmx:rmi:///jndi/rmi://localhost:1099/jmxrmi
2018-11-22 06:22:44.294 INFO 2123 --- [ main] o.apache.activemq.broker.BrokerService : Apache ActiveMQ 5.15.3 (localhost, ID:ip-10-0-13-236-33217-1542867764146-0:1) is starting
2018-11-22 06:22:44.302 INFO 2123 --- [ main] o.apache.activemq.broker.BrokerService : Apache ActiveMQ 5.15.3 (localhost, ID:ip-10-0-13-236-33217-1542867764146-0:1) started
2018-11-22 06:22:44.302 INFO 2123 --- [ main] o.apache.activemq.broker.BrokerService : For help or more information please see: http://activemq.apache.org
2018-11-22 06:22:44.345 INFO 2123 --- [ main] o.a.activemq.broker.TransportConnector : Connector vm://localhost started
2018-11-22 06:22:44.450 INFO 2123 --- [ main] o.s.b.w.embedded.tomcat.TomcatWebServer : Tomcat started on port(s): 8080 (http) with context path ''
2018-11-22 06:22:44.453 INFO 2123 --- [ main] org.snomed.snowstorm.App : Started App in 10.449 seconds (JVM running for 10.966)
2018-11-22 06:22:44.456 INFO 2123 --- [ main] i.k.elasticvc.api.ComponentService : Initialising indices
2018-11-22 06:22:44.579 INFO 2123 --- [ main] org.snomed.snowstorm.mrcm.MRCMLoader : Loading MRCM from XML document.
2018-11-22 06:22:44.717 INFO 2123 --- [ main] org.snomed.snowstorm.mrcm.MRCMLoader : MRCM loaded with 16 domains and 100 attributes.
2018-11-22 06:22:50.119 INFO 2123 --- [nio-8080-exec-1] o.a.c.c.C.[Tomcat].[localhost].[/] : Initializing Spring FrameworkServlet 'dispatcherServlet'
2018-11-22 06:22:50.120 INFO 2123 --- [nio-8080-exec-1] o.s.web.servlet.DispatcherServlet : FrameworkServlet 'dispatcherServlet': initialization started
2018-11-22 06:22:50.139 INFO 2123 --- [nio-8080-exec-1] o.s.web.servlet.DispatcherServlet : FrameworkServlet 'dispatcherServlet': initialization completed in 19 ms
2018-11-22 06:22:51.703 ERROR 2123 --- [nio-8080-exec-1] o.s.s.rest.config.RestControllerAdvice : Unhandled exception.
org.springframework.web.multipart.MultipartException: Failed to parse multipart servlet request; nested exception is java.io.IOException: org.apache.tomcat.util.http.fileupload.FileUploadBase$IOFileUploadException: Processing of multipart/form-data request failed. Unexpected EOF read on the socket
at org.springframework.web.multipart.support.StandardMultipartHttpServletRequest.handleParseFailure(StandardMultipartHttpServletRequest.java:122) ~[spring-web-5.0.5.RELEASE.jar!/:5.0.5.RELEASE]
at org.springframework.web.multipart.support.StandardMultipartHttpServletRequest.parseRequest(StandardMultipartHttpServletRequest.java:113) ~[spring-web-5.0.5.RELEASE.jar!/:5.0.5.RELEASE]
at org.springframework.web.multipart.support.StandardMultipartHttpServletRequest.<init>(StandardMultipartHttpServletRequest.java:86) ~[spring-web-5.0.5.RELEASE.jar!/:5.0.5.RELEASE]
at org.springframework.web.multipart.support.StandardServletMultipartResolver.resolveMultipart(StandardServletMultipartResolver.java:93) ~[spring-web-5.0.5.RELEASE.jar!/:5.0.5.RELEASE]
at org.springframework.web.servlet.DispatcherServlet.checkMultipart(DispatcherServlet.java:1128) ~[spring-webmvc-5.0.5.RELEASE.jar!/:5.0.5.RELEASE]
at org.springframework.web.servlet.DispatcherServlet.doDispatch(DispatcherServlet.java:960) ~[spring-webmvc-5.0.5.RELEASE.jar!/:5.0.5.RELEASE]
at org.springframework.web.servlet.DispatcherServlet.doService(DispatcherServlet.java:925) ~[spring-webmvc-5.0.5.RELEASE.jar!/:5.0.5.RELEASE]
at org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:974) [spring-webmvc-5.0.5.RELEASE.jar!/:5.0.5.RELEASE]
at org.springframework.web.servlet.FrameworkServlet.doPost(FrameworkServlet.java:877) [spring-webmvc-5.0.5.RELEASE.jar!/:5.0.5.RELEASE]
at javax.servlet.http.HttpServlet.service(HttpServlet.java:661) [tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.springframework.web.servlet.FrameworkServlet.service(FrameworkServlet.java:851) [spring-webmvc-5.0.5.RELEASE.jar!/:5.0.5.RELEASE]
at javax.servlet.http.HttpServlet.service(HttpServlet.java:742) [tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:231) [tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166) [tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52) [tomcat-embed-websocket-8.5.29.jar!/:8.5.29]
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193) [tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166) [tomcat-embed-core-8.5.29.jar!/:8.5.29]
at io.kaicode.rest.util.branchpathrewrite.BranchPathUriRewriteFilter.doFilter(BranchPathUriRewriteFilter.java:50) [branch-path-uri-rewrite-filter-2.0.0.jar!/:na]
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193) [tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166) [tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.snomed.snowstorm.rest.security.RequestHeaderAuthenticationDecoratorWithRequiredRole.doFilterInternal(RequestHeaderAuthenticationDecoratorWithRequiredRole.java:43) [classes!/:2.1.1-SNAPSHOT]
at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107) [spring-web-5.0.5.RELEASE.jar!/:5.0.5.RELEASE]
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193) [tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166) [tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:101) [spring-web-5.0.5.RELEASE.jar!/:5.0.5.RELEASE]
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193) [tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166) [tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:320) [spring-security-web-5.0.4.RELEASE.jar!/:5.0.4.RELEASE]
at org.springframework.security.web.access.ExceptionTranslationFilter.doFilter(ExceptionTranslationFilter.java:119) [spring-security-web-5.0.4.RELEASE.jar!/:5.0.4.RELEASE]
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:334) [spring-security-web-5.0.4.RELEASE.jar!/:5.0.4.RELEASE]
at org.springframework.security.web.session.SessionManagementFilter.doFilter(SessionManagementFilter.java:137) [spring-security-web-5.0.4.RELEASE.jar!/:5.0.4.RELEASE]
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:334) [spring-security-web-5.0.4.RELEASE.jar!/:5.0.4.RELEASE]
at org.springframework.security.web.authentication.AnonymousAuthenticationFilter.doFilter(AnonymousAuthenticationFilter.java:111) [spring-security-web-5.0.4.RELEASE.jar!/:5.0.4.RELEASE]
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:334) [spring-security-web-5.0.4.RELEASE.jar!/:5.0.4.RELEASE]
at org.springframework.security.web.servletapi.SecurityContextHolderAwareRequestFilter.doFilter(SecurityContextHolderAwareRequestFilter.java:170) [spring-security-web-5.0.4.RELEASE.jar!/:5.0.4.RELEASE]
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:334) [spring-security-web-5.0.4.RELEASE.jar!/:5.0.4.RELEASE]
at org.springframework.security.web.savedrequest.RequestCacheAwareFilter.doFilter(RequestCacheAwareFilter.java:63) [spring-security-web-5.0.4.RELEASE.jar!/:5.0.4.RELEASE]
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:334) [spring-security-web-5.0.4.RELEASE.jar!/:5.0.4.RELEASE]
at org.springframework.security.web.authentication.logout.LogoutFilter.doFilter(LogoutFilter.java:116) [spring-security-web-5.0.4.RELEASE.jar!/:5.0.4.RELEASE]
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:334) [spring-security-web-5.0.4.RELEASE.jar!/:5.0.4.RELEASE]
at org.springframework.security.web.header.HeaderWriterFilter.doFilterInternal(HeaderWriterFilter.java:66) [spring-security-web-5.0.4.RELEASE.jar!/:5.0.4.RELEASE]
at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107) [spring-web-5.0.5.RELEASE.jar!/:5.0.5.RELEASE]
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:334) [spring-security-web-5.0.4.RELEASE.jar!/:5.0.4.RELEASE]
at org.springframework.security.web.context.SecurityContextPersistenceFilter.doFilter(SecurityContextPersistenceFilter.java:105) [spring-security-web-5.0.4.RELEASE.jar!/:5.0.4.RELEASE]
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:334) [spring-security-web-5.0.4.RELEASE.jar!/:5.0.4.RELEASE]
at org.springframework.security.web.context.request.async.WebAsyncManagerIntegrationFilter.doFilterInternal(WebAsyncManagerIntegrationFilter.java:56) [spring-security-web-5.0.4.RELEASE.jar!/:5.0.4.RELEASE]
at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107) [spring-web-5.0.5.RELEASE.jar!/:5.0.5.RELEASE]
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:334) [spring-security-web-5.0.4.RELEASE.jar!/:5.0.4.RELEASE]
at org.springframework.security.web.FilterChainProxy.doFilterInternal(FilterChainProxy.java:215) [spring-security-web-5.0.4.RELEASE.jar!/:5.0.4.RELEASE]
at org.springframework.security.web.FilterChainProxy.doFilter(FilterChainProxy.java:178) [spring-security-web-5.0.4.RELEASE.jar!/:5.0.4.RELEASE]
at org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:357) [spring-web-5.0.5.RELEASE.jar!/:5.0.5.RELEASE]
at org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:270) [spring-web-5.0.5.RELEASE.jar!/:5.0.5.RELEASE]
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193) [tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166) [tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.springframework.web.filter.RequestContextFilter.doFilterInternal(RequestContextFilter.java:99) [spring-web-5.0.5.RELEASE.jar!/:5.0.5.RELEASE]
at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107) [spring-web-5.0.5.RELEASE.jar!/:5.0.5.RELEASE]
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193) [tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166) [tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.springframework.web.filter.HttpPutFormContentFilter.doFilterInternal(HttpPutFormContentFilter.java:109) [spring-web-5.0.5.RELEASE.jar!/:5.0.5.RELEASE]
at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107) [spring-web-5.0.5.RELEASE.jar!/:5.0.5.RELEASE]
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193) [tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166) [tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.springframework.web.filter.HiddenHttpMethodFilter.doFilterInternal(HiddenHttpMethodFilter.java:81) [spring-web-5.0.5.RELEASE.jar!/:5.0.5.RELEASE]
at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107) [spring-web-5.0.5.RELEASE.jar!/:5.0.5.RELEASE]
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193) [tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166) [tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.springframework.web.filter.CharacterEncodingFilter.doFilterInternal(CharacterEncodingFilter.java:200) [spring-web-5.0.5.RELEASE.jar!/:5.0.5.RELEASE]
at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107) [spring-web-5.0.5.RELEASE.jar!/:5.0.5.RELEASE]
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193) [tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166) [tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:198) [tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:96) [tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:496) [tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:140) [tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:81) [tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:87) [tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:342) [tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.coyote.http11.Http11Processor.service(Http11Processor.java:803) [tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.coyote.AbstractProcessorLight.process(AbstractProcessorLight.java:66) [tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.coyote.AbstractProtocol$ConnectionHandler.process(AbstractProtocol.java:790) [tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.doRun(NioEndpoint.java:1459) [tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.tomcat.util.net.SocketProcessorBase.run(SocketProcessorBase.java:49) [tomcat-embed-core-8.5.29.jar!/:8.5.29]
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) [na:1.8.0_181]
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) [na:1.8.0_181]
at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61) [tomcat-embed-core-8.5.29.jar!/:8.5.29]
at java.lang.Thread.run(Thread.java:748) [na:1.8.0_181]
Caused by: java.io.IOException: org.apache.tomcat.util.http.fileupload.FileUploadBase$IOFileUploadException: Processing of multipart/form-data request failed. Unexpected EOF read on the socket
at org.apache.catalina.connector.Request.parseParts(Request.java:2916) ~[tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.catalina.connector.Request.parseParameters(Request.java:3216) ~[tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.catalina.connector.Request.getParameter(Request.java:1137) ~[tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.catalina.connector.RequestFacade.getParameter(RequestFacade.java:381) ~[tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.springframework.web.filter.HiddenHttpMethodFilter.doFilterInternal(HiddenHttpMethodFilter.java:75) [spring-web-5.0.5.RELEASE.jar!/:5.0.5.RELEASE]
... 23 common frames omitted
Caused by: org.apache.tomcat.util.http.fileupload.FileUploadBase$IOFileUploadException: Processing of multipart/form-data request failed. Unexpected EOF read on the socket
at org.apache.tomcat.util.http.fileupload.FileUploadBase.parseRequest(FileUploadBase.java:297) ~[tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.catalina.connector.Request.parseParts(Request.java:2868) ~[tomcat-embed-core-8.5.29.jar!/:8.5.29]
... 27 common frames omitted
Caused by: java.io.EOFException: Unexpected EOF read on the socket
at org.apache.coyote.http11.Http11InputBuffer.fill(Http11InputBuffer.java:722) ~[tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.coyote.http11.Http11InputBuffer.access$300(Http11InputBuffer.java:40) ~[tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.coyote.http11.Http11InputBuffer$SocketInputBuffer.doRead(Http11InputBuffer.java:1072) ~[tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.coyote.http11.filters.IdentityInputFilter.doRead(IdentityInputFilter.java:140) ~[tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.coyote.http11.Http11InputBuffer.doRead(Http11InputBuffer.java:261) ~[tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.coyote.Request.doRead(Request.java:581) ~[tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.catalina.connector.InputBuffer.realReadBytes(InputBuffer.java:326) ~[tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.catalina.connector.InputBuffer.checkByteBufferEof(InputBuffer.java:642) ~[tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.catalina.connector.InputBuffer.read(InputBuffer.java:349) ~[tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.catalina.connector.CoyoteInputStream.read(CoyoteInputStream.java:183) ~[tomcat-embed-core-8.5.29.jar!/:8.5.29]
at java.io.FilterInputStream.read(FilterInputStream.java:133) ~[na:1.8.0_181]
at org.apache.tomcat.util.http.fileupload.util.LimitedInputStream.read(LimitedInputStream.java:132) ~[tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.tomcat.util.http.fileupload.MultipartStream$ItemInputStream.makeAvailable(MultipartStream.java:977) ~[tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.tomcat.util.http.fileupload.MultipartStream$ItemInputStream.read(MultipartStream.java:881) ~[tomcat-embed-core-8.5.29.jar!/:8.5.29]
at java.io.FilterInputStream.read(FilterInputStream.java:133) ~[na:1.8.0_181]
at org.apache.tomcat.util.http.fileupload.util.LimitedInputStream.read(LimitedInputStream.java:132) ~[tomcat-embed-core-8.5.29.jar!/:8.5.29]
at java.io.FilterInputStream.read(FilterInputStream.java:107) ~[na:1.8.0_181]
at org.apache.tomcat.util.http.fileupload.util.Streams.copy(Streams.java:98) ~[tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.tomcat.util.http.fileupload.util.Streams.copy(Streams.java:68) ~[tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.tomcat.util.http.fileupload.FileUploadBase.parseRequest(FileUploadBase.java:293) ~[tomcat-embed-core-8.5.29.jar!/:8.5.29]
... 28 common frames omitted
2018-11-22 06:23:25.206 INFO 2123 --- [pool-2-thread-1] o.s.s.core.rf2.rf2import.ImportService : Starting RF2 FULL import on branch MAIN. ID 95bf74c4-5c17-40e6-8c7a-d7eda7684c63
2018-11-22 06:23:25.928 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Unzipping file to /tmp/temp-rf2-unzip8731596522264738431/Full
2018-11-22 06:23:25.928 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Unzipping file to /tmp/temp-rf2-unzip8731596522264738431/Terminology
2018-11-22 06:23:25.928 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Unzipping file to /tmp/temp-rf2-unzip8731596522264738431/sct2_Concept_Full_INT_20180731.txt
2018-11-22 06:23:26.085 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Unzipping file to /tmp/temp-rf2-unzip8731596522264738431/sct2_Description_Full-en_INT_20180731.txt
2018-11-22 06:23:28.685 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Unzipping file to /tmp/temp-rf2-unzip8731596522264738431/sct2_StatedRelationship_Full_INT_20180731.txt
2018-11-22 06:23:29.628 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Unzipping file to /tmp/temp-rf2-unzip8731596522264738431/sct2_Relationship_Full_INT_20180731.txt
2018-11-22 06:23:35.025 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Unzipping file to /tmp/temp-rf2-unzip8731596522264738431/sct2_Identifier_Full_INT_20180731.txt
2018-11-22 06:23:35.025 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Unzipping file to /tmp/temp-rf2-unzip8731596522264738431/sct2_TextDefinition_Full-en_INT_20180731.txt
2018-11-22 06:23:35.036 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Unzipping file to /tmp/temp-rf2-unzip8731596522264738431/sct2_sRefset_OWLOntologyFull_INT_20180731.txt
2018-11-22 06:23:35.036 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Unzipping file to /tmp/temp-rf2-unzip8731596522264738431/sct2_sRefset_OWLAxiomFull_INT_20180731.txt
2018-11-22 06:23:35.036 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Unzipping file to /tmp/temp-rf2-unzip8731596522264738431/Refset
2018-11-22 06:23:35.036 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Unzipping file to /tmp/temp-rf2-unzip8731596522264738431/Content
2018-11-22 06:23:35.036 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Unzipping file to /tmp/temp-rf2-unzip8731596522264738431/der2_cRefset_AssociationFull_INT_20180731.txt
2018-11-22 06:23:35.170 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Unzipping file to /tmp/temp-rf2-unzip8731596522264738431/der2_cRefset_AttributeValueFull_INT_20180731.txt
2018-11-22 06:23:35.744 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Unzipping file to /tmp/temp-rf2-unzip8731596522264738431/der2_Refset_SimpleFull_INT_20180731.txt
2018-11-22 06:23:35.761 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Unzipping file to /tmp/temp-rf2-unzip8731596522264738431/Map
2018-11-22 06:23:35.762 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Unzipping file to /tmp/temp-rf2-unzip8731596522264738431/der2_sRefset_SimpleMapFull_INT_20180731.txt
2018-11-22 06:23:36.161 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Unzipping file to /tmp/temp-rf2-unzip8731596522264738431/der2_iisssccRefset_ExtendedMapFull_INT_20180731.txt
2018-11-22 06:23:36.437 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Unzipping file to /tmp/temp-rf2-unzip8731596522264738431/Language
2018-11-22 06:23:36.438 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Unzipping file to /tmp/temp-rf2-unzip8731596522264738431/der2_cRefset_LanguageFull-en_INT_20180731.txt
2018-11-22 06:23:44.594 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Unzipping file to /tmp/temp-rf2-unzip8731596522264738431/Metadata
2018-11-22 06:23:44.594 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Unzipping file to /tmp/temp-rf2-unzip8731596522264738431/der2_cciRefset_RefsetDescriptorFull_INT_20180731.txt
2018-11-22 06:23:44.595 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Unzipping file to /tmp/temp-rf2-unzip8731596522264738431/der2_ssRefset_ModuleDependencyFull_INT_20180731.txt
2018-11-22 06:23:44.595 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Unzipping file to /tmp/temp-rf2-unzip8731596522264738431/der2_ciRefset_DescriptionTypeFull_INT_20180731.txt
2018-11-22 06:23:44.595 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Unzipping file to /tmp/temp-rf2-unzip8731596522264738431/der2_sssssssRefset_MRCMDomainFull_INT_20180731.txt
2018-11-22 06:23:44.595 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Unzipping file to /tmp/temp-rf2-unzip8731596522264738431/der2_cissccRefset_MRCMAttributeDomainFull_INT_20180731.txt
2018-11-22 06:23:44.596 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Unzipping file to /tmp/temp-rf2-unzip8731596522264738431/der2_ssccRefset_MRCMAttributeRangeFull_INT_20180731.txt
2018-11-22 06:23:44.596 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Unzipping file to /tmp/temp-rf2-unzip8731596522264738431/der2_cRefset_MRCMModuleScopeFull_INT_20180731.txt
2018-11-22 06:23:49.919 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : RF2 release filename not recognised 'sct2_Identifier_Full_INT_20180731.txt'. This file will not be loaded.
2018-11-22 06:23:49.919 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Loading FULL release files ReleaseFiles{conceptPaths=[/tmp/temp-rf2-unzip8731596522264738431/sct2_Concept_Full_INT_20180731.txt], descriptionPaths=[/tmp/temp-rf2-unzip8731596522264738431/sct2_Description_Full-en_INT_20180731.txt], textDefinitionPaths=[/tmp/temp-rf2-unzip8731596522264738431/sct2_TextDefinition_Full-en_INT_20180731.txt], relationshipPaths=[/tmp/temp-rf2-unzip8731596522264738431/sct2_Relationship_Full_INT_20180731.txt], statedRelationshipPaths=[/tmp/temp-rf2-unzip8731596522264738431/sct2_StatedRelationship_Full_INT_20180731.txt], refsetPaths=[/tmp/temp-rf2-unzip8731596522264738431/der2_ssccRefset_MRCMAttributeRangeFull_INT_20180731.txt, /tmp/temp-rf2-unzip8731596522264738431/sct2_sRefset_OWLAxiomFull_INT_20180731.txt, /tmp/temp-rf2-unzip8731596522264738431/der2_cciRefset_RefsetDescriptorFull_INT_20180731.txt, /tmp/temp-rf2-unzip8731596522264738431/sct2_sRefset_OWLOntologyFull_INT_20180731.txt, /tmp/temp-rf2-unzip8731596522264738431/der2_Refset_SimpleFull_INT_20180731.txt, /tmp/temp-rf2-unzip8731596522264738431/der2_ciRefset_DescriptionTypeFull_INT_20180731.txt, /tmp/temp-rf2-unzip8731596522264738431/der2_cRefset_MRCMModuleScopeFull_INT_20180731.txt, /tmp/temp-rf2-unzip8731596522264738431/der2_cRefset_LanguageFull-en_INT_20180731.txt, /tmp/temp-rf2-unzip8731596522264738431/der2_sssssssRefset_MRCMDomainFull_INT_20180731.txt, /tmp/temp-rf2-unzip8731596522264738431/der2_cRefset_AssociationFull_INT_20180731.txt, /tmp/temp-rf2-unzip8731596522264738431/der2_cissccRefset_MRCMAttributeDomainFull_INT_20180731.txt, /tmp/temp-rf2-unzip8731596522264738431/der2_cRefset_AttributeValueFull_INT_20180731.txt, /tmp/temp-rf2-unzip8731596522264738431/der2_iisssccRefset_ExtendedMapFull_INT_20180731.txt, /tmp/temp-rf2-unzip8731596522264738431/der2_ssRefset_ModuleDependencyFull_INT_20180731.txt, /tmp/temp-rf2-unzip8731596522264738431/der2_sRefset_SimpleMapFull_INT_20180731.txt]}
2018-11-22 06:23:49.919 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Gathering list of release versions...
2018-11-22 06:23:58.424 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Release versions found: [20020131, 20020731, 20030131, 20030731, 20040131, 20040731, 20050131, 20050731, 20060131, 20060731, 20070131, 20070731, 20080131, 20080731, 20090131, 20090731, 20100131, 20100731, 20110131, 20110731, 20120131, 20120731, 20130131, 20130731, 20140131, 20140731, 20150131, 20150731, 20160131, 20160731, 20170131, 20170731, 20180131, 20180731]
2018-11-22 06:23:58.482 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Open commit on MAIN at 1542867838482
2018-11-22 06:23:58.482 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Loading release delta 20020131
2018-11-22 06:23:58.482 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading concepts for release 20020131
2018-11-22 06:23:58.656 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Concepts
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2018-11-22 06:24:25.730 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : 581635 concepts read from sct2_Concept_Full_INT_20180731.txt
2018-11-22 06:24:25.733 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : includedReferenceSetPathPatterns: []
2018-11-22 06:24:25.738 INFO 2123 --- [pool-5-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading relationships for release 20020131
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2018-11-22 06:24:25.766 INFO 2123 --- [pool-5-thread-3] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading descriptions for release 20020131
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2018-11-22 06:24:25.825 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:24:25.855 INFO 2123 --- [pool-5-thread-4] o.ihtsdo.otf.snomedboot.ReleaseImporter : 5151 descriptions read from sct2_TextDefinition_Full-en_INT_20180731.txt
2018-11-22 06:24:25.904 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
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2018-11-22 06:24:31.526 INFO 2123 --- [pool-5-thread-2] o.ihtsdo.otf.snomedboot.ReleaseImporter : 1130957 relationships read from sct2_StatedRelationship_Full_INT_20180731.txt
2018-11-22 06:24:31.580 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
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2018-11-22 06:24:41.534 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
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2018-11-22 06:24:41.929 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
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2018-11-22 06:24:42.925 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:24:43.119 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
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2018-11-22 06:24:47.302 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
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2018-11-22 06:25:20.673 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
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2018-11-22 06:25:21.316 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
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2018-11-22 06:25:22.318 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
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2018-11-22 06:25:23.013 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
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2018-11-22 06:25:23.765 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:25:24.432 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:25:24.662 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:25:25.378 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
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2018-11-22 06:25:26.364 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:25:26.565 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:25:27.157 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:25:27.345 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:25:27.717 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:25:27.969 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:25:28.312 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:25:28.634 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:25:28.859 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:25:29.394 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:25:29.577 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:25:30.117 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:25:30.462 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:25:31.045 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:25:31.279 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:25:31.681 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:25:31.946 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:25:32.467 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:25:32.605 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:25:33.071 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:25:33.231 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:25:33.780 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:25:33.950 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:25:34.435 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:25:34.542 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
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2018-11-22 06:25:35.061 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
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2018-11-22 06:25:35.826 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:25:36.137 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:25:36.420 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:25:36.811 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:25:37.255 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:25:37.649 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:25:38.124 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
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2018-11-22 06:25:38.768 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:25:39.165 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:25:39.597 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:25:39.955 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:25:40.221 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:25:40.507 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:25:40.919 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:25:41.030 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:25:41.640 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:25:41.913 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:25:42.526 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:25:42.723 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:25:43.277 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:25:43.487 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:25:44.075 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:25:44.244 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:25:44.759 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:25:44.985 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:25:45.481 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:25:45.683 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:25:46.471 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:25:46.650 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:25:47.929 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:25:47.979 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:25:48.442 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:25:48.597 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:25:49.126 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:25:50.071 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:25:50.539 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:25:50.936 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:25:51.365 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:25:51.741 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:25:52.148 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:25:52.574 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:25:52.809 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:25:54.112 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:25:54.241 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:25:54.955 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:25:55.939 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:25:56.478 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:25:56.731 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:25:57.277 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:25:57.481 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:25:58.078 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:25:59.275 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:25:59.916 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:26:00.103 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:26:00.702 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:26:01.631 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:26:04.855 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:26:05.794 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:26:07.210 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:26:08.330 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:26:10.402 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:26:10.585 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:26:12.389 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:26:13.457 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:26:13.995 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:26:14.181 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:26:14.665 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:26:14.802 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:26:15.239 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:26:15.321 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:26:15.919 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:26:16.076 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:26:16.749 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:26:16.957 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:26:17.363 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:26:17.478 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:26:17.912 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:26:18.087 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:26:18.679 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:26:18.796 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:26:19.221 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:26:19.397 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:26:19.783 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:26:19.875 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:26:20.325 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:26:20.441 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:26:20.863 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:26:21.018 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:26:21.635 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:26:21.781 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:26:22.176 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:26:22.354 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:26:22.806 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:26:23.065 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:26:23.468 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:26:23.785 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:26:24.076 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:26:24.264 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:26:24.551 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:26:24.847 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:26:25.135 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:26:25.331 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:26:25.590 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:26:25.824 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:26:26.209 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:26:26.454 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:26:26.790 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:26:26.981 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:26:27.335 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:26:27.589 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:26:28.048 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:26:28.363 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:26:28.669 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:26:28.828 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:26:29.097 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:26:29.315 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:26:29.613 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:26:30.284 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:26:30.811 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:26:31.279 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:26:31.656 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:26:32.209 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:26:32.545 INFO 2123 --- [pool-5-thread-3] o.ihtsdo.otf.snomedboot.ReleaseImporter : 2513952 descriptions read from sct2_Description_Full-en_INT_20180731.txt
2018-11-22 06:26:32.710 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:26:33.130 INFO 2123 --- [pool-5-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:26:38.975 INFO 2123 --- [pool-5-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : 5112181 relationships read from sct2_Relationship_Full_INT_20180731.txt
2018-11-22 06:26:38.975 INFO 2123 --- [pool-5-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20020131
2018-11-22 06:26:38.975 INFO 2123 --- [pool-5-thread-3] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20020131
2018-11-22 06:26:38.975 INFO 2123 --- [pool-5-thread-3] o.ihtsdo.otf.snomedboot.ReleaseImporter : 11 reference set members read from sct2_sRefset_OWLAxiomFull_INT_20180731.txt
2018-11-22 06:26:38.976 INFO 2123 --- [pool-5-thread-5] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20020131
2018-11-22 06:26:38.976 INFO 2123 --- [pool-5-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : 144 reference set members read from der2_ssccRefset_MRCMAttributeRangeFull_INT_20180731.txt
2018-11-22 06:26:38.978 INFO 2123 --- [pool-5-thread-5] o.ihtsdo.otf.snomedboot.ReleaseImporter : 167 reference set members read from der2_cciRefset_RefsetDescriptorFull_INT_20180731.txt
2018-11-22 06:26:38.979 INFO 2123 --- [pool-5-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20020131
2018-11-22 06:26:38.979 INFO 2123 --- [pool-5-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : 3 reference set members read from der2_cRefset_MRCMModuleScopeFull_INT_20180731.txt
2018-11-22 06:26:38.979 INFO 2123 --- [pool-5-thread-6] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20020131
2018-11-22 06:26:38.979 INFO 2123 --- [pool-5-thread-3] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20020131
2018-11-22 06:26:38.980 INFO 2123 --- [pool-5-thread-3] o.ihtsdo.otf.snomedboot.ReleaseImporter : 7 reference set members read from sct2_sRefset_OWLOntologyFull_INT_20180731.txt
2018-11-22 06:26:38.980 INFO 2123 --- [pool-5-thread-5] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20020131
2018-11-22 06:26:38.980 INFO 2123 --- [pool-5-thread-5] o.ihtsdo.otf.snomedboot.ReleaseImporter : 4 reference set members read from der2_ciRefset_DescriptionTypeFull_INT_20180731.txt
2018-11-22 06:26:38.981 INFO 2123 --- [pool-5-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20020131
2018-11-22 06:26:38.981 INFO 2123 --- [pool-5-thread-3] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20020131
2018-11-22 06:26:38.981 INFO 2123 --- [pool-5-thread-5] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20020131
2018-11-22 06:26:38.981 INFO 2123 --- [pool-5-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : 154 reference set members read from der2_cissccRefset_MRCMAttributeDomainFull_INT_20180731.txt
2018-11-22 06:26:38.983 INFO 2123 --- [pool-5-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20020131
2018-11-22 06:26:38.983 INFO 2123 --- [pool-5-thread-5] o.ihtsdo.otf.snomedboot.ReleaseImporter : 36 reference set members read from der2_sssssssRefset_MRCMDomainFull_INT_20180731.txt
2018-11-22 06:26:38.984 INFO 2123 --- [pool-5-thread-7] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20020131
2018-11-22 06:26:38.984 INFO 2123 --- [pool-5-thread-8] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20020131
2018-11-22 06:26:38.985 INFO 2123 --- [pool-5-thread-5] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20020131
2018-11-22 06:26:38.985 INFO 2123 --- [pool-5-thread-9] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20020131
2018-11-22 06:26:39.000 INFO 2123 --- [pool-5-thread-9] o.ihtsdo.otf.snomedboot.ReleaseImporter : 56 reference set members read from der2_ssRefset_ModuleDependencyFull_INT_20180731.txt
2018-11-22 06:26:39.022 INFO 2123 --- [pool-5-thread-5] i.k.elasticvc.api.ComponentService : Saving batch of 1016 Concepts
2018-11-22 06:26:39.042 INFO 2123 --- [pool-5-thread-6] o.ihtsdo.otf.snomedboot.ReleaseImporter : 19870 reference set members read from der2_Refset_SimpleFull_INT_20180731.txt
2018-11-22 06:26:39.146 INFO 2123 --- [pool-5-thread-5] i.k.elasticvc.api.ComponentService : Saving batch of 2718 Descriptions
2018-11-22 06:26:39.411 INFO 2123 --- [pool-5-thread-5] i.k.elasticvc.api.ComponentService : Saving batch of 927 Relationships
2018-11-22 06:26:39.860 INFO 2123 --- [pool-5-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : 224459 reference set members read from der2_iisssccRefset_ExtendedMapFull_INT_20180731.txt
2018-11-22 06:26:40.415 INFO 2123 --- [pool-5-thread-5] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:26:41.167 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:26:41.859 INFO 2123 --- [pool-5-thread-8] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:26:42.328 INFO 2123 --- [pool-5-thread-8] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:26:43.001 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:26:43.549 INFO 2123 --- [pool-5-thread-8] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:26:44.052 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:26:44.591 INFO 2123 --- [pool-5-thread-8] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:26:45.292 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:26:46.041 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:26:46.615 INFO 2123 --- [pool-5-thread-5] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:26:47.459 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:26:48.040 INFO 2123 --- [pool-5-thread-5] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:26:48.497 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:26:48.929 INFO 2123 --- [pool-5-thread-8] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:26:49.426 INFO 2123 --- [pool-5-thread-5] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:26:49.997 INFO 2123 --- [pool-5-thread-5] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:26:50.414 INFO 2123 --- [pool-5-thread-5] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:26:51.056 INFO 2123 --- [pool-5-thread-5] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:26:51.732 INFO 2123 --- [pool-5-thread-5] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:26:52.318 INFO 2123 --- [pool-5-thread-5] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:26:52.789 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:26:53.276 INFO 2123 --- [pool-5-thread-5] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:26:54.483 INFO 2123 --- [pool-5-thread-5] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:26:55.555 INFO 2123 --- [pool-5-thread-5] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:26:56.895 INFO 2123 --- [pool-5-thread-5] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:26:58.254 INFO 2123 --- [pool-5-thread-8] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:27:00.453 INFO 2123 --- [pool-5-thread-5] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:27:02.792 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:27:06.120 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:27:08.348 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:27:09.525 INFO 2123 --- [pool-5-thread-5] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:27:11.670 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:27:13.139 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:27:15.363 INFO 2123 --- [pool-5-thread-5] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:27:16.830 INFO 2123 --- [pool-5-thread-8] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:27:17.362 INFO 2123 --- [pool-5-thread-3] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:27:18.017 INFO 2123 --- [pool-5-thread-8] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:27:18.777 INFO 2123 --- [pool-5-thread-8] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:27:19.312 INFO 2123 --- [pool-5-thread-5] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:27:19.867 INFO 2123 --- [pool-5-thread-5] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:27:20.309 INFO 2123 --- [pool-5-thread-8] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:27:20.791 INFO 2123 --- [pool-5-thread-5] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:27:21.391 INFO 2123 --- [pool-5-thread-8] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:27:21.903 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:27:22.416 INFO 2123 --- [pool-5-thread-8] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:27:23.042 INFO 2123 --- [pool-5-thread-5] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:27:23.734 INFO 2123 --- [pool-5-thread-5] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:27:24.312 INFO 2123 --- [pool-5-thread-5] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:27:24.644 INFO 2123 --- [pool-5-thread-3] o.ihtsdo.otf.snomedboot.ReleaseImporter : 167899 reference set members read from der2_cRefset_AssociationFull_INT_20180731.txt
2018-11-22 06:27:24.803 INFO 2123 --- [pool-5-thread-8] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:27:25.340 INFO 2123 --- [pool-5-thread-8] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:27:25.810 INFO 2123 --- [pool-5-thread-5] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:27:26.425 INFO 2123 --- [pool-5-thread-5] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:27:28.438 INFO 2123 --- [pool-5-thread-8] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:27:29.522 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:27:31.398 INFO 2123 --- [pool-5-thread-5] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:27:33.474 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:27:34.935 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:27:36.933 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:27:38.008 INFO 2123 --- [pool-5-thread-5] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:27:39.932 INFO 2123 --- [pool-5-thread-8] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:27:41.976 INFO 2123 --- [pool-5-thread-5] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:27:43.883 INFO 2123 --- [pool-5-thread-5] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:27:46.724 INFO 2123 --- [pool-5-thread-8] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:27:49.416 INFO 2123 --- [pool-5-thread-8] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:27:52.424 INFO 2123 --- [pool-5-thread-8] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:27:54.416 INFO 2123 --- [pool-5-thread-5] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:27:56.437 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:27:58.390 INFO 2123 --- [pool-5-thread-5] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:28:00.442 INFO 2123 --- [pool-5-thread-5] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:28:03.284 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:28:06.192 INFO 2123 --- [pool-5-thread-5] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:28:09.122 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:28:12.957 INFO 2123 --- [pool-5-thread-5] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:28:16.800 INFO 2123 --- [pool-5-thread-5] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:28:17.980 INFO 2123 --- [pool-5-thread-5] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:28:18.436 INFO 2123 --- [pool-5-thread-5] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:28:19.025 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:28:19.679 INFO 2123 --- [pool-5-thread-5] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:28:20.114 INFO 2123 --- [pool-5-thread-8] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:28:20.687 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:28:21.158 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:28:21.717 INFO 2123 --- [pool-5-thread-5] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:28:22.483 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:28:23.051 INFO 2123 --- [pool-5-thread-8] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:28:23.496 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:28:23.944 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:28:24.397 INFO 2123 --- [pool-5-thread-8] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:28:24.809 INFO 2123 --- [pool-5-thread-8] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:28:25.471 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:28:26.099 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:28:26.633 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:28:27.458 INFO 2123 --- [pool-5-thread-5] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:28:28.073 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:28:28.588 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:28:29.098 INFO 2123 --- [pool-5-thread-5] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:28:29.545 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:28:30.670 INFO 2123 --- [pool-5-thread-8] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:28:32.583 INFO 2123 --- [pool-5-thread-8] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:28:34.545 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:28:36.552 INFO 2123 --- [pool-5-thread-5] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:28:38.516 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:28:41.154 INFO 2123 --- [pool-5-thread-8] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:28:43.026 INFO 2123 --- [pool-5-thread-5] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:28:44.719 INFO 2123 --- [pool-5-thread-5] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:28:45.820 INFO 2123 --- [pool-5-thread-5] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:28:47.787 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:28:50.648 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:28:52.785 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:28:54.495 INFO 2123 --- [pool-5-thread-8] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:28:56.992 INFO 2123 --- [pool-5-thread-5] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:28:59.019 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:29:00.969 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:29:02.894 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:29:05.666 INFO 2123 --- [pool-5-thread-8] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:29:08.190 INFO 2123 --- [pool-5-thread-5] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:29:11.707 INFO 2123 --- [pool-5-thread-5] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:29:13.629 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:29:17.961 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:29:19.248 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:29:19.742 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:29:20.203 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:29:20.871 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:29:21.451 INFO 2123 --- [pool-5-thread-5] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:29:22.064 INFO 2123 --- [pool-5-thread-5] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:29:22.575 INFO 2123 --- [pool-5-thread-5] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:29:23.478 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:29:24.179 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:29:24.659 INFO 2123 --- [pool-5-thread-5] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:29:25.152 INFO 2123 --- [pool-5-thread-5] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:29:25.598 INFO 2123 --- [pool-5-thread-5] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:29:26.271 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:29:26.842 INFO 2123 --- [pool-5-thread-5] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:29:27.335 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:29:27.894 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:29:28.451 INFO 2123 --- [pool-5-thread-5] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:29:29.535 INFO 2123 --- [pool-5-thread-8] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:29:31.443 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:29:32.613 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:29:33.688 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:29:35.706 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:29:36.935 INFO 2123 --- [pool-5-thread-5] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:29:38.774 INFO 2123 --- [pool-5-thread-5] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:29:40.501 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:29:41.623 INFO 2123 --- [pool-5-thread-5] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:29:43.569 INFO 2123 --- [pool-5-thread-8] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:29:46.266 INFO 2123 --- [pool-5-thread-8] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:29:48.033 INFO 2123 --- [pool-5-thread-8] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:29:50.067 INFO 2123 --- [pool-5-thread-5] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:29:51.069 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:29:53.918 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:29:55.750 INFO 2123 --- [pool-5-thread-5] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:29:58.472 INFO 2123 --- [pool-5-thread-8] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:30:00.398 INFO 2123 --- [pool-5-thread-8] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:30:03.488 INFO 2123 --- [pool-5-thread-5] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:30:06.859 INFO 2123 --- [pool-5-thread-8] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:30:09.622 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:30:12.281 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:30:15.903 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:30:19.956 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:30:20.362 INFO 2123 --- [pool-5-thread-5] o.ihtsdo.otf.snomedboot.ReleaseImporter : 484195 reference set members read from der2_sRefset_SimpleMapFull_INT_20180731.txt
2018-11-22 06:30:20.528 INFO 2123 --- [pool-5-thread-8] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:30:21.180 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:30:21.833 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:30:22.443 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:30:23.091 INFO 2123 --- [pool-5-thread-8] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:30:23.750 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:30:24.441 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:30:25.085 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:30:25.696 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:30:26.217 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:30:26.883 INFO 2123 --- [pool-5-thread-8] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:30:27.600 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:30:28.246 INFO 2123 --- [pool-5-thread-8] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:30:28.816 INFO 2123 --- [pool-5-thread-8] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:30:29.583 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:30:31.911 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:30:33.760 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:30:36.426 INFO 2123 --- [pool-5-thread-8] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:30:37.569 INFO 2123 --- [pool-5-thread-8] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:30:39.520 INFO 2123 --- [pool-5-thread-8] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:30:42.175 INFO 2123 --- [pool-5-thread-8] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:30:43.551 INFO 2123 --- [pool-5-thread-8] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:30:45.575 INFO 2123 --- [pool-5-thread-8] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:30:48.403 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:30:49.559 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:30:52.212 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:30:54.143 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:30:55.934 INFO 2123 --- [pool-5-thread-8] o.ihtsdo.otf.snomedboot.ReleaseImporter : 665802 reference set members read from der2_cRefset_AttributeValueFull_INT_20180731.txt
2018-11-22 06:30:56.208 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:30:58.982 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:31:01.138 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
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2018-11-22 06:36:08.951 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:36:12.727 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:36:16.564 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:36:19.443 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:36:24.656 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:36:25.358 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:36:26.069 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:36:26.761 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:36:27.542 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:36:28.359 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:36:28.917 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:36:29.584 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:36:30.109 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:36:30.759 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:36:31.415 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:36:32.041 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:36:32.731 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:36:33.477 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:36:34.255 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:36:36.253 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:36:38.246 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:36:40.169 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:36:42.708 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:36:44.056 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:36:46.164 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:36:49.699 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:36:52.491 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:36:54.449 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:36:56.539 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:36:59.077 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:37:02.051 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:37:04.163 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:37:07.108 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:37:10.220 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:37:13.867 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:37:17.770 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:37:22.972 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:37:25.870 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:37:26.584 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:37:27.353 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:37:28.016 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:37:28.634 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:37:29.443 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:37:30.139 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:37:30.731 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:37:31.344 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:37:31.897 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:37:32.507 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:37:33.165 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:37:33.840 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:37:34.529 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:37:35.292 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:37:36.037 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:37:37.276 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:37:39.316 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:37:41.551 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:37:42.685 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:37:44.823 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:37:46.805 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:37:48.787 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:37:50.842 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:37:52.951 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:37:54.966 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:37:57.034 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:37:59.896 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:38:01.878 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:38:04.762 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:38:07.929 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:38:10.945 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:38:15.464 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:38:19.900 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:38:24.526 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:38:27.313 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:38:27.985 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:38:28.554 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:38:29.174 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:38:29.823 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:38:30.527 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:38:31.156 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:38:31.784 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:38:32.396 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:38:32.969 INFO 2123 --- [pool-5-thread-7] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:38:33.323 INFO 2123 --- [pool-5-thread-7] o.ihtsdo.otf.snomedboot.ReleaseImporter : 3207060 reference set members read from der2_cRefset_LanguageFull-en_INT_20180731.txt
2018-11-22 06:38:33.654 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 4505 ReferenceSetMembers
2018-11-22 06:38:33.943 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: started
2018-11-22 06:38:33.944 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: get branch criteria took 0.001 seconds
2018-11-22 06:38:33.983 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed is-a relationships. took 0.039 seconds
2018-11-22 06:38:33.995 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed axiom is-a fragments. took 0.012 seconds
2018-11-22 06:38:33.996 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : Performing incremental update of stated semantic index
2018-11-22 06:38:34.003 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect existingAncestors from QueryConcept. took 0.008 seconds
2018-11-22 06:38:34.011 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect existingDescendants from QueryConcept. took 0.008 seconds
2018-11-22 06:38:34.022 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Build existing nodes from Relationships. took 0.011 seconds
2018-11-22 06:38:34.036 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Build existing nodes from Axioms. took 0.014 seconds
2018-11-22 06:38:34.036 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : 0 existing nodes loaded.
2018-11-22 06:38:34.091 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Update graph using changed relationships. took 0.055 seconds
2018-11-22 06:38:34.100 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Update graph using changed axioms. took 0.009 seconds
2018-11-22 06:38:34.190 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect existingDescendants from QueryConcept. took 0.09 seconds
2018-11-22 06:38:34.196 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 161 QueryConcepts
2018-11-22 06:38:34.323 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Save updated QueryConcepts took 0.133 seconds
2018-11-22 06:38:34.323 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: total took 0.38 seconds
2018-11-22 06:38:34.323 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: started
2018-11-22 06:38:34.323 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: get branch criteria took 0.0 seconds
2018-11-22 06:38:55.182 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect changed is-a relationships. took 20.859 seconds
2018-11-22 06:38:55.182 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : Performing incremental update of inferred semantic index
2018-11-22 06:38:56.511 WARN 2123 --- [/O dispatcher 2] org.elasticsearch.client.RestClient : request [GET http://localhost:9200/es-query/query-concept/_search?typed_keys=true&ignore_unavailable=false&expand_wildcards=open&allow_no_indices=true&scroll=60000ms&search_type=query_then_fetch&batched_reduce_size=512] returned 1 warnings: [299 Elasticsearch-6.5.1-8c58350 "Deprecated: the number of terms [278183] used in the Terms Query request has exceeded the allowed maximum of [65536]. This maximum can be set by changing the [index.max_terms_count] index level setting." "Thu, 22 Nov 2018 06:38:55 GMT"]
2018-11-22 06:38:56.511 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect existingAncestors from QueryConcept. took 1.329 seconds
2018-11-22 06:38:57.047 WARN 2123 --- [/O dispatcher 2] org.elasticsearch.client.RestClient : request [GET http://localhost:9200/es-query/query-concept/_search?typed_keys=true&ignore_unavailable=false&expand_wildcards=open&allow_no_indices=true&scroll=60000ms&search_type=query_then_fetch&batched_reduce_size=512] returned 1 warnings: [299 Elasticsearch-6.5.1-8c58350 "Deprecated: the number of terms [278182] used in the Terms Query request has exceeded the allowed maximum of [65536]. This maximum can be set by changing the [index.max_terms_count] index level setting." "Thu, 22 Nov 2018 06:38:56 GMT"]
2018-11-22 06:38:57.047 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect existingDescendants from QueryConcept. took 0.536 seconds
2018-11-22 06:39:04.001 WARN 2123 --- [/O dispatcher 2] org.elasticsearch.client.RestClient : request [GET http://localhost:9200/es-rel/relationship/_search?typed_keys=true&ignore_unavailable=false&expand_wildcards=open&allow_no_indices=true&scroll=60000ms&search_type=query_then_fetch&batched_reduce_size=512] returned 1 warnings: [299 Elasticsearch-6.5.1-8c58350 "Deprecated: the number of terms [278183] used in the Terms Query request has exceeded the allowed maximum of [65536]. This maximum can be set by changing the [index.max_terms_count] index level setting." "Thu, 22 Nov 2018 06:38:57 GMT"]
2018-11-22 06:39:04.002 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Build existing nodes from Relationships. took 6.955 seconds
2018-11-22 06:39:04.002 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : 0 existing nodes loaded.
2018-11-22 06:39:37.795 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Update graph using changed relationships. took 33.793 seconds
2018-11-22 06:39:40.553 WARN 2123 --- [/O dispatcher 2] org.elasticsearch.client.RestClient : request [GET http://localhost:9200/es-concept/concept/_search?typed_keys=true&ignore_unavailable=false&expand_wildcards=open&allow_no_indices=true&search_type=dfs_query_then_fetch&batched_reduce_size=512] returned 1 warnings: [299 Elasticsearch-6.5.1-8c58350 "Deprecated: the number of terms [278183] used in the Terms Query request has exceeded the allowed maximum of [65536]. This maximum can be set by changing the [index.max_terms_count] index level setting." "Thu, 22 Nov 2018 06:39:37 GMT"]
2018-11-22 06:39:42.287 WARN 2123 --- [/O dispatcher 2] org.elasticsearch.client.RestClient : request [GET http://localhost:9200/es-query/query-concept/_search?typed_keys=true&ignore_unavailable=false&expand_wildcards=open&allow_no_indices=true&scroll=60000ms&search_type=query_then_fetch&batched_reduce_size=512] returned 1 warnings: [299 Elasticsearch-6.5.1-8c58350 "Deprecated: the number of terms [278183] used in the Terms Query request has exceeded the allowed maximum of [65536]. This maximum can be set by changing the [index.max_terms_count] index level setting." "Thu, 22 Nov 2018 06:39:40 GMT"]
2018-11-22 06:39:42.287 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect existingDescendants from QueryConcept. took 4.492 seconds
2018-11-22 06:39:44.379 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:39:46.325 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:39:47.382 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:39:48.540 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:39:49.307 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:39:50.155 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:39:50.993 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:39:52.013 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:39:52.927 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:39:54.010 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:39:55.856 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:39:57.235 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:39:58.273 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:39:59.094 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:39:59.923 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:40:00.787 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:40:01.583 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:40:02.645 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:40:03.676 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:40:05.179 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:40:06.179 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:40:07.177 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:40:08.054 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:40:08.920 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:40:09.770 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:40:10.631 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:40:11.829 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:40:13.055 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 8183 QueryConcepts
2018-11-22 06:40:14.008 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Save updated QueryConcepts took 31.721 seconds
2018-11-22 06:40:14.008 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: total took 99.685 seconds
2018-11-22 06:40:14.039 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Completed commit on MAIN at 1542867838482
2018-11-22 06:40:14.084 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Creating Code System version - Code System: SNOMEDCT, Version: 2002-01-31, Release Branch: MAIN/2002-01-31
2018-11-22 06:40:14.084 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Versioning content...
2018-11-22 06:40:14.107 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Open commit on MAIN at 1542868814107
2018-11-22 06:40:14.194 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: started
2018-11-22 06:40:14.207 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: get branch criteria took 0.013 seconds
2018-11-22 06:40:14.213 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed is-a relationships. took 0.006 seconds
2018-11-22 06:40:14.216 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed axiom is-a fragments. took 0.003 seconds
2018-11-22 06:40:14.228 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: started
2018-11-22 06:40:14.228 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: get branch criteria took 0.0 seconds
2018-11-22 06:40:14.233 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect changed is-a relationships. took 0.005 seconds
2018-11-22 06:40:14.251 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Completed commit on MAIN at 1542868814107
2018-11-22 06:40:14.251 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Creating version branch content...
2018-11-22 06:40:14.258 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Creating branch Branch{path=MAIN/2002-01-31, base=1542868814107, head=1542868814251, start=1542868814251, end=null}
2018-11-22 06:40:14.269 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Persisting Code System Version...
2018-11-22 06:40:14.283 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Versioning complete.
2018-11-22 06:40:14.307 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Open commit on MAIN at 1542868814307
2018-11-22 06:40:14.307 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Loading release delta 20020731
2018-11-22 06:40:14.307 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading concepts for release 20020731
2018-11-22 06:40:15.032 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Concepts
2018-11-22 06:40:16.347 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Concepts
2018-11-22 06:40:17.187 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Concepts
2018-11-22 06:40:17.930 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : 581635 concepts read from sct2_Concept_Full_INT_20180731.txt
2018-11-22 06:40:17.930 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : includedReferenceSetPathPatterns: []
2018-11-22 06:40:17.931 INFO 2123 --- [ool-5-thread-11] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading relationships for release 20020731
2018-11-22 06:40:17.931 INFO 2123 --- [ool-5-thread-10] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading relationships for release 20020731
2018-11-22 06:40:17.931 INFO 2123 --- [ool-5-thread-12] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading descriptions for release 20020731
2018-11-22 06:40:17.934 INFO 2123 --- [ool-5-thread-13] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading descriptions for release 20020731
2018-11-22 06:40:17.970 INFO 2123 --- [ool-5-thread-13] o.ihtsdo.otf.snomedboot.ReleaseImporter : 5151 descriptions read from sct2_TextDefinition_Full-en_INT_20180731.txt
2018-11-22 06:40:18.127 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:40:20.395 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:40:21.756 INFO 2123 --- [ool-5-thread-11] o.ihtsdo.otf.snomedboot.ReleaseImporter : 1130957 relationships read from sct2_StatedRelationship_Full_INT_20180731.txt
2018-11-22 06:40:22.503 INFO 2123 --- [ool-5-thread-12] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:40:22.621 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:40:24.695 INFO 2123 --- [ool-5-thread-12] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:40:24.983 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:40:27.352 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:40:27.468 INFO 2123 --- [ool-5-thread-12] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:40:29.181 INFO 2123 --- [ool-5-thread-12] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:40:29.188 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:40:29.950 INFO 2123 --- [ool-5-thread-12] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:40:30.763 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:40:30.909 INFO 2123 --- [ool-5-thread-12] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:40:31.756 INFO 2123 --- [ool-5-thread-12] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:40:32.552 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:40:32.637 INFO 2123 --- [ool-5-thread-12] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:40:33.409 INFO 2123 --- [ool-5-thread-12] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:40:34.145 INFO 2123 --- [ool-5-thread-12] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:40:34.393 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:40:34.899 INFO 2123 --- [ool-5-thread-12] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:40:36.381 INFO 2123 --- [ool-5-thread-12] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:40:36.890 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:40:37.370 INFO 2123 --- [ool-5-thread-12] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:40:38.531 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:40:39.687 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:40:40.539 INFO 2123 --- [ool-5-thread-12] o.ihtsdo.otf.snomedboot.ReleaseImporter : 2513952 descriptions read from sct2_Description_Full-en_INT_20180731.txt
2018-11-22 06:40:40.999 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:40:42.051 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:40:43.395 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:40:44.352 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:40:45.327 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:40:46.394 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:40:47.433 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:40:48.554 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:40:49.607 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:40:50.685 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:40:51.839 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:40:53.003 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:40:54.019 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:40:55.172 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:40:56.159 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:40:57.248 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:40:58.280 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:40:59.390 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:41:00.552 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:41:01.638 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:41:02.683 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:41:03.834 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:41:05.679 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:41:07.469 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:41:10.698 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:41:14.179 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:41:16.860 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:41:21.106 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:41:24.520 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:41:28.095 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:41:29.100 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:41:30.192 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:41:31.507 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:41:33.003 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:41:34.620 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:41:35.863 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:41:37.045 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:41:37.984 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:41:38.561 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:41:39.158 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:41:39.726 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:41:40.325 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:41:40.860 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:41:41.326 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:41:41.785 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:41:42.261 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:41:42.752 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:41:43.253 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:41:43.725 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:41:44.168 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:41:44.682 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:41:45.115 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:41:45.603 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:41:46.141 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:41:46.597 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:41:47.195 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:41:47.765 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:41:48.307 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:41:48.784 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:41:49.318 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:41:49.767 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:41:50.261 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:41:50.753 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:41:51.188 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:41:51.780 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:41:52.367 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:41:52.891 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:41:53.481 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:41:59.314 INFO 2123 --- [ool-5-thread-10] o.ihtsdo.otf.snomedboot.ReleaseImporter : 5112181 relationships read from sct2_Relationship_Full_INT_20180731.txt
2018-11-22 06:41:59.315 INFO 2123 --- [ool-5-thread-10] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20020731
2018-11-22 06:41:59.315 INFO 2123 --- [ool-5-thread-14] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20020731
2018-11-22 06:41:59.315 INFO 2123 --- [ool-5-thread-14] o.ihtsdo.otf.snomedboot.ReleaseImporter : 11 reference set members read from sct2_sRefset_OWLAxiomFull_INT_20180731.txt
2018-11-22 06:41:59.316 INFO 2123 --- [ool-5-thread-10] o.ihtsdo.otf.snomedboot.ReleaseImporter : 144 reference set members read from der2_ssccRefset_MRCMAttributeRangeFull_INT_20180731.txt
2018-11-22 06:41:59.316 INFO 2123 --- [ool-5-thread-10] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20020731
2018-11-22 06:41:59.316 INFO 2123 --- [ool-5-thread-14] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20020731
2018-11-22 06:41:59.316 INFO 2123 --- [ool-5-thread-10] o.ihtsdo.otf.snomedboot.ReleaseImporter : 7 reference set members read from sct2_sRefset_OWLOntologyFull_INT_20180731.txt
2018-11-22 06:41:59.316 INFO 2123 --- [ool-5-thread-16] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20020731
2018-11-22 06:41:59.316 INFO 2123 --- [ool-5-thread-16] o.ihtsdo.otf.snomedboot.ReleaseImporter : 4 reference set members read from der2_ciRefset_DescriptionTypeFull_INT_20180731.txt
2018-11-22 06:41:59.316 INFO 2123 --- [ool-5-thread-15] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20020731
2018-11-22 06:41:59.317 INFO 2123 --- [ool-5-thread-15] o.ihtsdo.otf.snomedboot.ReleaseImporter : 167 reference set members read from der2_cciRefset_RefsetDescriptorFull_INT_20180731.txt
2018-11-22 06:41:59.317 INFO 2123 --- [ool-5-thread-10] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20020731
2018-11-22 06:41:59.317 INFO 2123 --- [ool-5-thread-16] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20020731
2018-11-22 06:41:59.318 INFO 2123 --- [ool-5-thread-15] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20020731
2018-11-22 06:41:59.319 INFO 2123 --- [ool-5-thread-17] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20020731
2018-11-22 06:41:59.319 INFO 2123 --- [ool-5-thread-17] o.ihtsdo.otf.snomedboot.ReleaseImporter : 3 reference set members read from der2_cRefset_MRCMModuleScopeFull_INT_20180731.txt
2018-11-22 06:41:59.323 INFO 2123 --- [ool-5-thread-16] o.ihtsdo.otf.snomedboot.ReleaseImporter : 36 reference set members read from der2_sssssssRefset_MRCMDomainFull_INT_20180731.txt
2018-11-22 06:41:59.323 INFO 2123 --- [ool-5-thread-17] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20020731
2018-11-22 06:41:59.326 INFO 2123 --- [ool-5-thread-16] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20020731
2018-11-22 06:41:59.330 INFO 2123 --- [ool-5-thread-19] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20020731
2018-11-22 06:41:59.330 INFO 2123 --- [ool-5-thread-18] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20020731
2018-11-22 06:41:59.343 INFO 2123 --- [ool-5-thread-18] o.ihtsdo.otf.snomedboot.ReleaseImporter : 154 reference set members read from der2_cissccRefset_MRCMAttributeDomainFull_INT_20180731.txt
2018-11-22 06:41:59.330 INFO 2123 --- [ool-5-thread-19] o.ihtsdo.otf.snomedboot.ReleaseImporter : 56 reference set members read from der2_ssRefset_ModuleDependencyFull_INT_20180731.txt
2018-11-22 06:41:59.345 INFO 2123 --- [ool-5-thread-20] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20020731
2018-11-22 06:41:59.384 INFO 2123 --- [ool-5-thread-14] o.ihtsdo.otf.snomedboot.ReleaseImporter : 19870 reference set members read from der2_Refset_SimpleFull_INT_20180731.txt
2018-11-22 06:41:59.417 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 338 Concepts
2018-11-22 06:41:59.518 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 629 Descriptions
2018-11-22 06:41:59.834 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 4123 Relationships
2018-11-22 06:42:00.231 INFO 2123 --- [ool-5-thread-17] o.ihtsdo.otf.snomedboot.ReleaseImporter : 224459 reference set members read from der2_iisssccRefset_ExtendedMapFull_INT_20180731.txt
2018-11-22 06:42:00.624 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:42:01.712 INFO 2123 --- [ool-5-thread-20] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:42:02.934 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:42:03.983 INFO 2123 --- [ool-5-thread-15] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:42:04.796 INFO 2123 --- [ool-5-thread-15] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:42:05.699 INFO 2123 --- [ool-5-thread-10] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:42:06.490 INFO 2123 --- [ool-5-thread-10] o.ihtsdo.otf.snomedboot.ReleaseImporter : 167899 reference set members read from der2_cRefset_AssociationFull_INT_20180731.txt
2018-11-22 06:42:06.975 INFO 2123 --- [ool-5-thread-20] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:42:09.595 INFO 2123 --- [ool-5-thread-20] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:42:12.306 INFO 2123 --- [ool-5-thread-20] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:42:15.862 INFO 2123 --- [ool-5-thread-20] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:42:18.285 INFO 2123 --- [ool-5-thread-15] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:42:23.041 INFO 2123 --- [ool-5-thread-20] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:42:25.570 INFO 2123 --- [ool-5-thread-20] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:42:29.158 INFO 2123 --- [ool-5-thread-20] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:42:29.779 INFO 2123 --- [ool-5-thread-20] o.ihtsdo.otf.snomedboot.ReleaseImporter : 484195 reference set members read from der2_sRefset_SimpleMapFull_INT_20180731.txt
2018-11-22 06:42:30.023 INFO 2123 --- [ool-5-thread-16] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:42:30.846 INFO 2123 --- [ool-5-thread-16] o.ihtsdo.otf.snomedboot.ReleaseImporter : 665802 reference set members read from der2_cRefset_AttributeValueFull_INT_20180731.txt
2018-11-22 06:42:31.111 INFO 2123 --- [ool-5-thread-15] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:42:32.245 INFO 2123 --- [ool-5-thread-15] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:42:33.355 INFO 2123 --- [ool-5-thread-15] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:42:34.384 INFO 2123 --- [ool-5-thread-15] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:42:35.561 INFO 2123 --- [ool-5-thread-15] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:42:36.908 INFO 2123 --- [ool-5-thread-15] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:42:38.059 INFO 2123 --- [ool-5-thread-15] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:42:39.382 INFO 2123 --- [ool-5-thread-15] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:42:40.619 INFO 2123 --- [ool-5-thread-15] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:42:41.982 INFO 2123 --- [ool-5-thread-15] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:42:43.184 INFO 2123 --- [ool-5-thread-15] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:42:44.425 INFO 2123 --- [ool-5-thread-15] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:42:45.541 INFO 2123 --- [ool-5-thread-15] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:42:46.741 INFO 2123 --- [ool-5-thread-15] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:42:49.379 INFO 2123 --- [ool-5-thread-15] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:42:52.051 INFO 2123 --- [ool-5-thread-15] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:42:54.865 INFO 2123 --- [ool-5-thread-15] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:42:58.376 INFO 2123 --- [ool-5-thread-15] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:43:02.811 INFO 2123 --- [ool-5-thread-15] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:43:06.225 INFO 2123 --- [ool-5-thread-15] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:43:09.720 INFO 2123 --- [ool-5-thread-15] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:43:12.925 INFO 2123 --- [ool-5-thread-15] o.ihtsdo.otf.snomedboot.ReleaseImporter : 3207060 reference set members read from der2_cRefset_LanguageFull-en_INT_20180731.txt
2018-11-22 06:43:12.992 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 1078 ReferenceSetMembers
2018-11-22 06:43:14.871 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: started
2018-11-22 06:43:14.872 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: get branch criteria took 0.001 seconds
2018-11-22 06:43:14.875 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed is-a relationships. took 0.003 seconds
2018-11-22 06:43:14.878 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed axiom is-a fragments. took 0.003 seconds
2018-11-22 06:43:14.882 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: started
2018-11-22 06:43:14.882 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: get branch criteria took 0.0 seconds
2018-11-22 06:43:28.264 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect changed is-a relationships. took 13.382 seconds
2018-11-22 06:43:28.265 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : Performing incremental update of inferred semantic index
2018-11-22 06:43:31.647 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect existingAncestors from QueryConcept. took 3.382 seconds
2018-11-22 06:43:37.703 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect existingDescendants from QueryConcept. took 6.057 seconds
2018-11-22 06:43:40.426 WARN 2123 --- [/O dispatcher 2] org.elasticsearch.client.RestClient : request [GET http://localhost:9200/es-rel/relationship/_search?typed_keys=true&ignore_unavailable=false&expand_wildcards=open&allow_no_indices=true&scroll=60000ms&search_type=query_then_fetch&batched_reduce_size=512] returned 1 warnings: [299 Elasticsearch-6.5.1-8c58350 "Deprecated: the number of terms [178918] used in the Terms Query request has exceeded the allowed maximum of [65536]. This maximum can be set by changing the [index.max_terms_count] index level setting." "Thu, 22 Nov 2018 06:43:37 GMT"]
2018-11-22 06:44:19.087 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Build existing nodes from Relationships. took 41.384 seconds
2018-11-22 06:44:19.087 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : 173053 existing nodes loaded.
2018-11-22 06:44:37.293 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Update graph using changed relationships. took 18.206 seconds
2018-11-22 06:44:38.551 WARN 2123 --- [/O dispatcher 2] org.elasticsearch.client.RestClient : request [GET http://localhost:9200/es-concept/concept/_search?typed_keys=true&ignore_unavailable=false&expand_wildcards=open&allow_no_indices=true&search_type=dfs_query_then_fetch&batched_reduce_size=512] returned 1 warnings: [299 Elasticsearch-6.5.1-8c58350 "Deprecated: the number of terms [104442] used in the Terms Query request has exceeded the allowed maximum of [65536]. This maximum can be set by changing the [index.max_terms_count] index level setting." "Thu, 22 Nov 2018 06:44:37 GMT"]
2018-11-22 06:44:39.922 WARN 2123 --- [/O dispatcher 2] org.elasticsearch.client.RestClient : request [GET http://localhost:9200/es-concept/concept/_search?typed_keys=true&ignore_unavailable=false&expand_wildcards=open&allow_no_indices=true&scroll=60000ms&search_type=query_then_fetch&batched_reduce_size=512] returned 1 warnings: [299 Elasticsearch-6.5.1-8c58350 "Deprecated: the number of terms [104442] used in the Terms Query request has exceeded the allowed maximum of [65536]. This maximum can be set by changing the [index.max_terms_count] index level setting." "Thu, 22 Nov 2018 06:44:38 GMT"]
2018-11-22 06:44:51.645 WARN 2123 --- [/O dispatcher 2] org.elasticsearch.client.RestClient : request [GET http://localhost:9200/es-query/query-concept/_search?typed_keys=true&ignore_unavailable=false&expand_wildcards=open&allow_no_indices=true&scroll=60000ms&search_type=query_then_fetch&batched_reduce_size=512] returned 1 warnings: [299 Elasticsearch-6.5.1-8c58350 "Deprecated: the number of terms [185360] used in the Terms Query request has exceeded the allowed maximum of [65536]. This maximum can be set by changing the [index.max_terms_count] index level setting." "Thu, 22 Nov 2018 06:44:50 GMT"]
2018-11-22 06:45:12.291 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect existingDescendants from QueryConcept. took 34.998 seconds
2018-11-22 06:45:12.338 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:45:15.414 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:45:17.318 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:45:19.551 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:45:21.998 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:45:24.849 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:45:27.119 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:45:29.111 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:45:31.885 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:45:34.949 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:45:37.253 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:45:39.418 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:45:41.621 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:45:43.974 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:45:47.375 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:45:50.380 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:45:52.559 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:45:54.784 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:45:57.715 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5360 QueryConcepts
2018-11-22 06:45:59.905 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Save updated QueryConcepts took 47.614 seconds
2018-11-22 06:45:59.905 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: total took 165.023 seconds
2018-11-22 06:45:59.921 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Completed commit on MAIN at 1542868814307
2018-11-22 06:45:59.930 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Creating Code System version - Code System: SNOMEDCT, Version: 2002-07-31, Release Branch: MAIN/2002-07-31
2018-11-22 06:45:59.930 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Versioning content...
2018-11-22 06:45:59.944 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Open commit on MAIN at 1542869159944
2018-11-22 06:45:59.983 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: started
2018-11-22 06:45:59.983 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: get branch criteria took 0.0 seconds
2018-11-22 06:45:59.985 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed is-a relationships. took 0.002 seconds
2018-11-22 06:45:59.987 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed axiom is-a fragments. took 0.002 seconds
2018-11-22 06:45:59.989 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: started
2018-11-22 06:45:59.989 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: get branch criteria took 0.0 seconds
2018-11-22 06:45:59.991 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect changed is-a relationships. took 0.002 seconds
2018-11-22 06:46:00.004 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Completed commit on MAIN at 1542869159944
2018-11-22 06:46:00.004 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Creating version branch content...
2018-11-22 06:46:00.013 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Creating branch Branch{path=MAIN/2002-07-31, base=1542869159944, head=1542869160004, start=1542869160004, end=null}
2018-11-22 06:46:00.021 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Persisting Code System Version...
2018-11-22 06:46:00.029 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Versioning complete.
2018-11-22 06:46:00.040 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Open commit on MAIN at 1542869160040
2018-11-22 06:46:00.040 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Loading release delta 20030131
2018-11-22 06:46:00.040 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading concepts for release 20030131
2018-11-22 06:46:00.695 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Concepts
2018-11-22 06:46:01.625 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Concepts
2018-11-22 06:46:02.202 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : 581635 concepts read from sct2_Concept_Full_INT_20180731.txt
2018-11-22 06:46:02.202 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : includedReferenceSetPathPatterns: []
2018-11-22 06:46:02.203 INFO 2123 --- [ool-5-thread-21] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading relationships for release 20030131
2018-11-22 06:46:02.203 INFO 2123 --- [ool-5-thread-22] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading relationships for release 20030131
2018-11-22 06:46:02.206 INFO 2123 --- [ool-5-thread-23] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading descriptions for release 20030131
2018-11-22 06:46:02.211 INFO 2123 --- [ool-5-thread-24] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading descriptions for release 20030131
2018-11-22 06:46:02.247 INFO 2123 --- [ool-5-thread-24] o.ihtsdo.otf.snomedboot.ReleaseImporter : 5151 descriptions read from sct2_TextDefinition_Full-en_INT_20180731.txt
2018-11-22 06:46:02.870 INFO 2123 --- [ool-5-thread-21] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:46:04.918 INFO 2123 --- [ool-5-thread-21] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:46:05.442 INFO 2123 --- [ool-5-thread-23] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:46:05.448 INFO 2123 --- [ool-5-thread-22] o.ihtsdo.otf.snomedboot.ReleaseImporter : 1130957 relationships read from sct2_StatedRelationship_Full_INT_20180731.txt
2018-11-22 06:46:07.125 INFO 2123 --- [ool-5-thread-21] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:46:08.521 INFO 2123 --- [ool-5-thread-23] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:46:09.198 INFO 2123 --- [ool-5-thread-21] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:46:11.226 INFO 2123 --- [ool-5-thread-23] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:46:12.028 INFO 2123 --- [ool-5-thread-21] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:46:13.001 INFO 2123 --- [ool-5-thread-23] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:46:14.026 INFO 2123 --- [ool-5-thread-23] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:46:14.416 INFO 2123 --- [ool-5-thread-21] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:46:14.952 INFO 2123 --- [ool-5-thread-23] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:46:16.991 INFO 2123 --- [ool-5-thread-23] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:46:17.427 INFO 2123 --- [ool-5-thread-21] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:46:19.327 INFO 2123 --- [ool-5-thread-23] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:46:21.042 INFO 2123 --- [ool-5-thread-23] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:46:21.349 INFO 2123 --- [ool-5-thread-21] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:46:24.499 INFO 2123 --- [ool-5-thread-23] o.ihtsdo.otf.snomedboot.ReleaseImporter : 2513952 descriptions read from sct2_Description_Full-en_INT_20180731.txt
2018-11-22 06:46:25.157 INFO 2123 --- [ool-5-thread-21] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:46:29.665 INFO 2123 --- [ool-5-thread-21] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:46:31.741 INFO 2123 --- [ool-5-thread-21] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:46:32.932 INFO 2123 --- [ool-5-thread-21] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:46:33.975 INFO 2123 --- [ool-5-thread-21] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:46:35.085 INFO 2123 --- [ool-5-thread-21] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:46:36.360 INFO 2123 --- [ool-5-thread-21] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:46:37.876 INFO 2123 --- [ool-5-thread-21] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:46:39.286 INFO 2123 --- [ool-5-thread-21] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:46:40.393 INFO 2123 --- [ool-5-thread-21] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:46:41.454 INFO 2123 --- [ool-5-thread-21] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:46:42.646 INFO 2123 --- [ool-5-thread-21] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:46:43.801 INFO 2123 --- [ool-5-thread-21] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:46:45.034 INFO 2123 --- [ool-5-thread-21] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:46:46.163 INFO 2123 --- [ool-5-thread-21] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:46:47.914 INFO 2123 --- [ool-5-thread-21] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:46:49.663 INFO 2123 --- [ool-5-thread-21] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:46:50.896 INFO 2123 --- [ool-5-thread-21] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:46:52.061 INFO 2123 --- [ool-5-thread-21] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:46:53.214 INFO 2123 --- [ool-5-thread-21] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:46:54.311 INFO 2123 --- [ool-5-thread-21] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:46:55.999 INFO 2123 --- [ool-5-thread-21] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:46:57.896 INFO 2123 --- [ool-5-thread-21] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:46:59.706 INFO 2123 --- [ool-5-thread-21] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:47:03.069 INFO 2123 --- [ool-5-thread-21] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:47:07.337 INFO 2123 --- [ool-5-thread-21] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:47:11.148 INFO 2123 --- [ool-5-thread-21] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:47:14.850 INFO 2123 --- [ool-5-thread-21] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:47:18.239 INFO 2123 --- [ool-5-thread-21] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:47:21.736 INFO 2123 --- [ool-5-thread-21] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:47:26.442 INFO 2123 --- [ool-5-thread-21] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:47:29.970 INFO 2123 --- [ool-5-thread-21] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:47:31.665 INFO 2123 --- [ool-5-thread-21] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:47:32.701 INFO 2123 --- [ool-5-thread-21] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:47:33.848 INFO 2123 --- [ool-5-thread-21] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:47:35.007 INFO 2123 --- [ool-5-thread-21] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:47:35.551 INFO 2123 --- [ool-5-thread-21] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:47:36.210 INFO 2123 --- [ool-5-thread-21] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:47:36.700 INFO 2123 --- [ool-5-thread-21] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:47:37.143 INFO 2123 --- [ool-5-thread-21] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:47:37.680 INFO 2123 --- [ool-5-thread-21] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:47:38.237 INFO 2123 --- [ool-5-thread-21] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:47:38.855 INFO 2123 --- [ool-5-thread-21] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:47:39.620 INFO 2123 --- [ool-5-thread-21] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:47:40.338 INFO 2123 --- [ool-5-thread-21] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:47:40.865 INFO 2123 --- [ool-5-thread-21] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:47:41.432 INFO 2123 --- [ool-5-thread-21] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:47:41.906 INFO 2123 --- [ool-5-thread-21] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:47:42.496 INFO 2123 --- [ool-5-thread-21] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:47:43.047 INFO 2123 --- [ool-5-thread-21] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:47:43.561 INFO 2123 --- [ool-5-thread-21] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:47:44.266 INFO 2123 --- [ool-5-thread-21] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:47:44.788 INFO 2123 --- [ool-5-thread-21] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:47:45.395 INFO 2123 --- [ool-5-thread-21] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:47:46.051 INFO 2123 --- [ool-5-thread-21] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:47:46.562 INFO 2123 --- [ool-5-thread-21] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:47:47.076 INFO 2123 --- [ool-5-thread-21] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:47:47.621 INFO 2123 --- [ool-5-thread-21] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:47:48.118 INFO 2123 --- [ool-5-thread-21] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:47:48.684 INFO 2123 --- [ool-5-thread-21] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:47:49.214 INFO 2123 --- [ool-5-thread-21] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:47:49.755 INFO 2123 --- [ool-5-thread-21] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:47:50.254 INFO 2123 --- [ool-5-thread-21] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:47:55.259 INFO 2123 --- [ool-5-thread-21] o.ihtsdo.otf.snomedboot.ReleaseImporter : 5112181 relationships read from sct2_Relationship_Full_INT_20180731.txt
2018-11-22 06:47:55.259 INFO 2123 --- [ool-5-thread-21] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20030131
2018-11-22 06:47:55.270 INFO 2123 --- [ool-5-thread-26] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20030131
2018-11-22 06:47:55.271 INFO 2123 --- [ool-5-thread-28] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20030131
2018-11-22 06:47:55.271 INFO 2123 --- [ool-5-thread-27] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20030131
2018-11-22 06:47:55.271 INFO 2123 --- [ool-5-thread-33] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20030131
2018-11-22 06:47:55.271 INFO 2123 --- [ool-5-thread-27] o.ihtsdo.otf.snomedboot.ReleaseImporter : 7 reference set members read from sct2_sRefset_OWLOntologyFull_INT_20180731.txt
2018-11-22 06:47:55.271 INFO 2123 --- [ool-5-thread-26] o.ihtsdo.otf.snomedboot.ReleaseImporter : 167 reference set members read from der2_cciRefset_RefsetDescriptorFull_INT_20180731.txt
2018-11-22 06:47:55.270 INFO 2123 --- [ool-5-thread-25] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20030131
2018-11-22 06:47:55.271 INFO 2123 --- [ool-5-thread-21] o.ihtsdo.otf.snomedboot.ReleaseImporter : 144 reference set members read from der2_ssccRefset_MRCMAttributeRangeFull_INT_20180731.txt
2018-11-22 06:47:55.272 INFO 2123 --- [ool-5-thread-25] o.ihtsdo.otf.snomedboot.ReleaseImporter : 11 reference set members read from sct2_sRefset_OWLAxiomFull_INT_20180731.txt
2018-11-22 06:47:55.272 INFO 2123 --- [ool-5-thread-29] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20030131
2018-11-22 06:47:55.272 INFO 2123 --- [ool-5-thread-29] o.ihtsdo.otf.snomedboot.ReleaseImporter : 4 reference set members read from der2_ciRefset_DescriptionTypeFull_INT_20180731.txt
2018-11-22 06:47:55.271 INFO 2123 --- [ool-5-thread-30] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20030131
2018-11-22 06:47:55.274 INFO 2123 --- [ool-5-thread-30] o.ihtsdo.otf.snomedboot.ReleaseImporter : 3 reference set members read from der2_cRefset_MRCMModuleScopeFull_INT_20180731.txt
2018-11-22 06:47:55.274 INFO 2123 --- [ool-5-thread-34] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20030131
2018-11-22 06:47:55.274 INFO 2123 --- [ool-5-thread-25] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20030131
2018-11-22 06:47:55.275 INFO 2123 --- [ool-5-thread-34] o.ihtsdo.otf.snomedboot.ReleaseImporter : 154 reference set members read from der2_cissccRefset_MRCMAttributeDomainFull_INT_20180731.txt
2018-11-22 06:47:55.274 INFO 2123 --- [ool-5-thread-30] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20030131
2018-11-22 06:47:55.275 INFO 2123 --- [ool-5-thread-29] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20030131
2018-11-22 06:47:55.279 INFO 2123 --- [ool-5-thread-29] o.ihtsdo.otf.snomedboot.ReleaseImporter : 56 reference set members read from der2_ssRefset_ModuleDependencyFull_INT_20180731.txt
2018-11-22 06:47:55.290 INFO 2123 --- [ool-5-thread-35] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20030131
2018-11-22 06:47:55.290 INFO 2123 --- [ool-5-thread-31] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20030131
2018-11-22 06:47:55.291 INFO 2123 --- [ool-5-thread-32] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20030131
2018-11-22 06:47:55.311 INFO 2123 --- [ool-5-thread-28] o.ihtsdo.otf.snomedboot.ReleaseImporter : 19870 reference set members read from der2_Refset_SimpleFull_INT_20180731.txt
2018-11-22 06:47:55.313 INFO 2123 --- [ool-5-thread-32] o.ihtsdo.otf.snomedboot.ReleaseImporter : 36 reference set members read from der2_sssssssRefset_MRCMDomainFull_INT_20180731.txt
2018-11-22 06:47:55.437 INFO 2123 --- [ool-5-thread-25] i.k.elasticvc.api.ComponentService : Saving batch of 4770 Concepts
2018-11-22 06:47:55.781 INFO 2123 --- [ool-5-thread-25] i.k.elasticvc.api.ComponentService : Saving batch of 4488 Descriptions
2018-11-22 06:47:56.055 INFO 2123 --- [ool-5-thread-30] o.ihtsdo.otf.snomedboot.ReleaseImporter : 224459 reference set members read from der2_iisssccRefset_ExtendedMapFull_INT_20180731.txt
2018-11-22 06:47:56.233 INFO 2123 --- [ool-5-thread-25] i.k.elasticvc.api.ComponentService : Saving batch of 4605 Relationships
2018-11-22 06:47:56.729 INFO 2123 --- [ool-5-thread-25] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:47:57.811 INFO 2123 --- [ool-5-thread-25] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:47:58.754 INFO 2123 --- [ool-5-thread-35] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:47:59.730 INFO 2123 --- [ool-5-thread-33] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:48:00.748 INFO 2123 --- [ool-5-thread-31] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:48:01.934 INFO 2123 --- [ool-5-thread-33] o.ihtsdo.otf.snomedboot.ReleaseImporter : 167899 reference set members read from der2_cRefset_AssociationFull_INT_20180731.txt
2018-11-22 06:48:02.326 INFO 2123 --- [ool-5-thread-35] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:48:03.475 INFO 2123 --- [ool-5-thread-25] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:48:04.606 INFO 2123 --- [ool-5-thread-35] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:48:05.707 INFO 2123 --- [ool-5-thread-35] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:48:06.604 INFO 2123 --- [ool-5-thread-25] o.ihtsdo.otf.snomedboot.ReleaseImporter : 484195 reference set members read from der2_sRefset_SimpleMapFull_INT_20180731.txt
2018-11-22 06:48:07.616 INFO 2123 --- [ool-5-thread-31] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:48:11.104 INFO 2123 --- [ool-5-thread-35] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:48:15.812 INFO 2123 --- [ool-5-thread-35] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:48:18.696 INFO 2123 --- [ool-5-thread-35] o.ihtsdo.otf.snomedboot.ReleaseImporter : 665802 reference set members read from der2_cRefset_AttributeValueFull_INT_20180731.txt
2018-11-22 06:48:20.376 INFO 2123 --- [ool-5-thread-31] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:48:23.271 INFO 2123 --- [ool-5-thread-31] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:48:28.318 INFO 2123 --- [ool-5-thread-31] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:48:31.782 INFO 2123 --- [ool-5-thread-31] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:48:33.948 INFO 2123 --- [ool-5-thread-31] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:48:35.173 INFO 2123 --- [ool-5-thread-31] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:48:36.840 INFO 2123 --- [ool-5-thread-31] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:48:38.448 INFO 2123 --- [ool-5-thread-31] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:48:39.888 INFO 2123 --- [ool-5-thread-31] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:48:41.454 INFO 2123 --- [ool-5-thread-31] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:48:43.020 INFO 2123 --- [ool-5-thread-31] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:48:44.703 INFO 2123 --- [ool-5-thread-31] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:48:46.036 INFO 2123 --- [ool-5-thread-31] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:48:47.332 INFO 2123 --- [ool-5-thread-31] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:48:49.279 INFO 2123 --- [ool-5-thread-31] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:48:52.408 INFO 2123 --- [ool-5-thread-31] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:48:54.559 INFO 2123 --- [ool-5-thread-31] o.ihtsdo.otf.snomedboot.ReleaseImporter : 3207060 reference set members read from der2_cRefset_LanguageFull-en_INT_20180731.txt
2018-11-22 06:48:54.834 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 3164 ReferenceSetMembers
2018-11-22 06:48:56.668 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: started
2018-11-22 06:48:56.668 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: get branch criteria took 0.0 seconds
2018-11-22 06:48:56.670 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed is-a relationships. took 0.002 seconds
2018-11-22 06:48:56.672 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed axiom is-a fragments. took 0.002 seconds
2018-11-22 06:48:56.675 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: started
2018-11-22 06:48:56.675 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: get branch criteria took 0.0 seconds
2018-11-22 06:49:03.253 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect changed is-a relationships. took 6.578 seconds
2018-11-22 06:49:03.253 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : Performing incremental update of inferred semantic index
2018-11-22 06:49:07.128 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect existingAncestors from QueryConcept. took 3.875 seconds
2018-11-22 06:49:21.869 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect existingDescendants from QueryConcept. took 14.741 seconds
2018-11-22 06:49:28.398 WARN 2123 --- [/O dispatcher 3] org.elasticsearch.client.RestClient : request [GET http://localhost:9200/es-rel/relationship/_search?typed_keys=true&ignore_unavailable=false&expand_wildcards=open&allow_no_indices=true&scroll=60000ms&search_type=query_then_fetch&batched_reduce_size=512] returned 1 warnings: [299 Elasticsearch-6.5.1-8c58350 "Deprecated: the number of terms [171523] used in the Terms Query request has exceeded the allowed maximum of [65536]. This maximum can be set by changing the [index.max_terms_count] index level setting." "Thu, 22 Nov 2018 06:49:21 GMT"]
2018-11-22 06:50:13.992 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Build existing nodes from Relationships. took 52.123 seconds
2018-11-22 06:50:13.992 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : 165609 existing nodes loaded.
2018-11-22 06:50:28.996 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Update graph using changed relationships. took 15.004 seconds
2018-11-22 06:50:30.177 WARN 2123 --- [/O dispatcher 3] org.elasticsearch.client.RestClient : request [GET http://localhost:9200/es-concept/concept/_search?typed_keys=true&ignore_unavailable=false&expand_wildcards=open&allow_no_indices=true&search_type=dfs_query_then_fetch&batched_reduce_size=512] returned 1 warnings: [299 Elasticsearch-6.5.1-8c58350 "Deprecated: the number of terms [108060] used in the Terms Query request has exceeded the allowed maximum of [65536]. This maximum can be set by changing the [index.max_terms_count] index level setting." "Thu, 22 Nov 2018 06:50:29 GMT"]
2018-11-22 06:50:31.405 WARN 2123 --- [/O dispatcher 3] org.elasticsearch.client.RestClient : request [GET http://localhost:9200/es-concept/concept/_search?typed_keys=true&ignore_unavailable=false&expand_wildcards=open&allow_no_indices=true&scroll=60000ms&search_type=query_then_fetch&batched_reduce_size=512] returned 1 warnings: [299 Elasticsearch-6.5.1-8c58350 "Deprecated: the number of terms [108060] used in the Terms Query request has exceeded the allowed maximum of [65536]. This maximum can be set by changing the [index.max_terms_count] index level setting." "Thu, 22 Nov 2018 06:50:30 GMT"]
2018-11-22 06:50:40.647 WARN 2123 --- [/O dispatcher 3] org.elasticsearch.client.RestClient : request [GET http://localhost:9200/es-query/query-concept/_search?typed_keys=true&ignore_unavailable=false&expand_wildcards=open&allow_no_indices=true&scroll=60000ms&search_type=query_then_fetch&batched_reduce_size=512] returned 1 warnings: [299 Elasticsearch-6.5.1-8c58350 "Deprecated: the number of terms [185848] used in the Terms Query request has exceeded the allowed maximum of [65536]. This maximum can be set by changing the [index.max_terms_count] index level setting." "Thu, 22 Nov 2018 06:50:38 GMT"]
2018-11-22 06:51:09.573 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect existingDescendants from QueryConcept. took 40.577 seconds
2018-11-22 06:51:09.622 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:51:12.072 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:51:14.030 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:51:16.880 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:51:19.305 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:51:22.265 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:51:24.467 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:51:26.797 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:51:29.244 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:51:31.965 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:51:34.140 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:51:36.748 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:51:39.500 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:51:41.580 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:51:44.140 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:51:46.403 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:51:49.290 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:51:52.835 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:51:56.189 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5844 QueryConcepts
2018-11-22 06:51:58.714 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Save updated QueryConcepts took 49.141 seconds
2018-11-22 06:51:58.714 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: total took 182.039 seconds
2018-11-22 06:51:58.728 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Completed commit on MAIN at 1542869160040
2018-11-22 06:51:58.735 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Creating Code System version - Code System: SNOMEDCT, Version: 2003-01-31, Release Branch: MAIN/2003-01-31
2018-11-22 06:51:58.735 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Versioning content...
2018-11-22 06:51:58.746 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Open commit on MAIN at 1542869518746
2018-11-22 06:51:58.799 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: started
2018-11-22 06:51:58.799 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: get branch criteria took 0.0 seconds
2018-11-22 06:51:58.801 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed is-a relationships. took 0.002 seconds
2018-11-22 06:51:58.802 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed axiom is-a fragments. took 0.001 seconds
2018-11-22 06:51:58.810 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: started
2018-11-22 06:51:58.810 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: get branch criteria took 0.0 seconds
2018-11-22 06:51:58.811 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect changed is-a relationships. took 0.001 seconds
2018-11-22 06:51:58.839 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Completed commit on MAIN at 1542869518746
2018-11-22 06:51:58.839 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Creating version branch content...
2018-11-22 06:51:58.846 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Creating branch Branch{path=MAIN/2003-01-31, base=1542869518746, head=1542869518839, start=1542869518839, end=null}
2018-11-22 06:51:58.855 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Persisting Code System Version...
2018-11-22 06:51:58.865 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Versioning complete.
2018-11-22 06:51:58.879 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Open commit on MAIN at 1542869518879
2018-11-22 06:51:58.879 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Loading release delta 20030731
2018-11-22 06:51:58.879 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading concepts for release 20030731
2018-11-22 06:51:59.488 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Concepts
2018-11-22 06:52:00.201 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Concepts
2018-11-22 06:52:00.630 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : 581635 concepts read from sct2_Concept_Full_INT_20180731.txt
2018-11-22 06:52:00.630 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : includedReferenceSetPathPatterns: []
2018-11-22 06:52:00.631 INFO 2123 --- [ool-5-thread-37] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading relationships for release 20030731
2018-11-22 06:52:00.631 INFO 2123 --- [ool-5-thread-38] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading descriptions for release 20030731
2018-11-22 06:52:00.631 INFO 2123 --- [ool-5-thread-36] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading relationships for release 20030731
2018-11-22 06:52:00.631 INFO 2123 --- [ool-5-thread-39] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading descriptions for release 20030731
2018-11-22 06:52:00.668 INFO 2123 --- [ool-5-thread-39] o.ihtsdo.otf.snomedboot.ReleaseImporter : 5151 descriptions read from sct2_TextDefinition_Full-en_INT_20180731.txt
2018-11-22 06:52:01.375 INFO 2123 --- [ool-5-thread-36] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:52:02.912 INFO 2123 --- [ool-5-thread-38] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:52:04.209 INFO 2123 --- [ool-5-thread-36] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:52:04.559 INFO 2123 --- [ool-5-thread-37] o.ihtsdo.otf.snomedboot.ReleaseImporter : 1130957 relationships read from sct2_StatedRelationship_Full_INT_20180731.txt
2018-11-22 06:52:05.972 INFO 2123 --- [ool-5-thread-38] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:52:06.069 INFO 2123 --- [ool-5-thread-36] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:52:08.356 INFO 2123 --- [ool-5-thread-38] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:52:08.611 INFO 2123 --- [ool-5-thread-36] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:52:13.463 INFO 2123 --- [ool-5-thread-38] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:52:14.504 INFO 2123 --- [ool-5-thread-36] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:52:19.661 INFO 2123 --- [ool-5-thread-38] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:52:21.638 INFO 2123 --- [ool-5-thread-36] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:52:27.163 INFO 2123 --- [ool-5-thread-38] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:52:29.363 INFO 2123 --- [ool-5-thread-36] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:52:33.743 INFO 2123 --- [ool-5-thread-38] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:52:34.821 INFO 2123 --- [ool-5-thread-36] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:52:35.383 INFO 2123 --- [ool-5-thread-38] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:52:36.999 INFO 2123 --- [ool-5-thread-36] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:52:37.479 INFO 2123 --- [ool-5-thread-38] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:52:38.921 INFO 2123 --- [ool-5-thread-36] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:52:39.235 INFO 2123 --- [ool-5-thread-38] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:52:40.908 INFO 2123 --- [ool-5-thread-36] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:52:41.084 INFO 2123 --- [ool-5-thread-38] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:52:42.783 INFO 2123 --- [ool-5-thread-36] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:52:42.914 INFO 2123 --- [ool-5-thread-38] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:52:44.380 INFO 2123 --- [ool-5-thread-38] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:52:44.910 INFO 2123 --- [ool-5-thread-36] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:52:45.262 INFO 2123 --- [ool-5-thread-38] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:52:46.010 INFO 2123 --- [ool-5-thread-38] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:52:46.694 INFO 2123 --- [ool-5-thread-36] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:52:46.913 INFO 2123 --- [ool-5-thread-38] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:52:49.215 INFO 2123 --- [ool-5-thread-36] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:52:50.145 INFO 2123 --- [ool-5-thread-38] o.ihtsdo.otf.snomedboot.ReleaseImporter : 2513952 descriptions read from sct2_Description_Full-en_INT_20180731.txt
2018-11-22 06:52:51.288 INFO 2123 --- [ool-5-thread-36] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:52:53.095 INFO 2123 --- [ool-5-thread-36] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:52:54.931 INFO 2123 --- [ool-5-thread-36] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:52:56.152 INFO 2123 --- [ool-5-thread-36] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:52:57.367 INFO 2123 --- [ool-5-thread-36] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:52:58.609 INFO 2123 --- [ool-5-thread-36] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:52:59.892 INFO 2123 --- [ool-5-thread-36] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:53:02.486 INFO 2123 --- [ool-5-thread-36] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:53:04.019 INFO 2123 --- [ool-5-thread-36] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:53:08.410 INFO 2123 --- [ool-5-thread-36] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:53:13.536 INFO 2123 --- [ool-5-thread-36] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:53:18.131 INFO 2123 --- [ool-5-thread-36] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:53:23.696 INFO 2123 --- [ool-5-thread-36] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:53:26.659 INFO 2123 --- [ool-5-thread-36] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:53:28.677 INFO 2123 --- [ool-5-thread-36] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:53:31.024 INFO 2123 --- [ool-5-thread-36] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:53:32.397 INFO 2123 --- [ool-5-thread-36] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:53:34.542 INFO 2123 --- [ool-5-thread-36] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:53:34.983 INFO 2123 --- [ool-5-thread-36] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:53:35.444 INFO 2123 --- [ool-5-thread-36] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:53:35.918 INFO 2123 --- [ool-5-thread-36] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:53:36.413 INFO 2123 --- [ool-5-thread-36] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:53:36.993 INFO 2123 --- [ool-5-thread-36] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:53:37.596 INFO 2123 --- [ool-5-thread-36] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:53:38.245 INFO 2123 --- [ool-5-thread-36] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:53:38.722 INFO 2123 --- [ool-5-thread-36] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:53:39.429 INFO 2123 --- [ool-5-thread-36] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:53:39.958 INFO 2123 --- [ool-5-thread-36] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:53:40.506 INFO 2123 --- [ool-5-thread-36] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:53:45.172 INFO 2123 --- [ool-5-thread-36] o.ihtsdo.otf.snomedboot.ReleaseImporter : 5112181 relationships read from sct2_Relationship_Full_INT_20180731.txt
2018-11-22 06:53:45.172 INFO 2123 --- [ool-5-thread-36] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20030731
2018-11-22 06:53:45.173 INFO 2123 --- [ool-5-thread-38] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20030731
2018-11-22 06:53:45.173 INFO 2123 --- [ool-5-thread-40] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20030731
2018-11-22 06:53:45.173 INFO 2123 --- [ool-5-thread-41] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20030731
2018-11-22 06:53:45.173 INFO 2123 --- [ool-5-thread-38] o.ihtsdo.otf.snomedboot.ReleaseImporter : 11 reference set members read from sct2_sRefset_OWLAxiomFull_INT_20180731.txt
2018-11-22 06:53:45.174 INFO 2123 --- [ool-5-thread-38] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20030731
2018-11-22 06:53:45.174 INFO 2123 --- [ool-5-thread-42] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20030731
2018-11-22 06:53:45.174 INFO 2123 --- [ool-5-thread-45] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20030731
2018-11-22 06:53:45.174 INFO 2123 --- [ool-5-thread-40] o.ihtsdo.otf.snomedboot.ReleaseImporter : 167 reference set members read from der2_cciRefset_RefsetDescriptorFull_INT_20180731.txt
2018-11-22 06:53:45.175 INFO 2123 --- [ool-5-thread-38] o.ihtsdo.otf.snomedboot.ReleaseImporter : 4 reference set members read from der2_ciRefset_DescriptionTypeFull_INT_20180731.txt
2018-11-22 06:53:45.175 INFO 2123 --- [ool-5-thread-46] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20030731
2018-11-22 06:53:45.175 INFO 2123 --- [ool-5-thread-38] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20030731
2018-11-22 06:53:45.175 INFO 2123 --- [ool-5-thread-41] o.ihtsdo.otf.snomedboot.ReleaseImporter : 7 reference set members read from sct2_sRefset_OWLOntologyFull_INT_20180731.txt
2018-11-22 06:53:45.175 INFO 2123 --- [ool-5-thread-47] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20030731
2018-11-22 06:53:45.175 INFO 2123 --- [ool-5-thread-36] o.ihtsdo.otf.snomedboot.ReleaseImporter : 144 reference set members read from der2_ssccRefset_MRCMAttributeRangeFull_INT_20180731.txt
2018-11-22 06:53:45.175 INFO 2123 --- [ool-5-thread-44] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20030731
2018-11-22 06:53:45.175 INFO 2123 --- [ool-5-thread-48] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20030731
2018-11-22 06:53:45.174 INFO 2123 --- [ool-5-thread-43] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20030731
2018-11-22 06:53:45.175 INFO 2123 --- [ool-5-thread-40] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20030731
2018-11-22 06:53:45.176 INFO 2123 --- [ool-5-thread-43] o.ihtsdo.otf.snomedboot.ReleaseImporter : 3 reference set members read from der2_cRefset_MRCMModuleScopeFull_INT_20180731.txt
2018-11-22 06:53:45.178 INFO 2123 --- [ool-5-thread-36] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20030731
2018-11-22 06:53:45.183 INFO 2123 --- [ool-5-thread-45] o.ihtsdo.otf.snomedboot.ReleaseImporter : 36 reference set members read from der2_sssssssRefset_MRCMDomainFull_INT_20180731.txt
2018-11-22 06:53:45.187 INFO 2123 --- [ool-5-thread-47] o.ihtsdo.otf.snomedboot.ReleaseImporter : 154 reference set members read from der2_cissccRefset_MRCMAttributeDomainFull_INT_20180731.txt
2018-11-22 06:53:45.189 INFO 2123 --- [ool-5-thread-48] o.ihtsdo.otf.snomedboot.ReleaseImporter : 56 reference set members read from der2_ssRefset_ModuleDependencyFull_INT_20180731.txt
2018-11-22 06:53:45.232 INFO 2123 --- [ool-5-thread-42] o.ihtsdo.otf.snomedboot.ReleaseImporter : 19870 reference set members read from der2_Refset_SimpleFull_INT_20180731.txt
2018-11-22 06:53:45.412 INFO 2123 --- [ool-5-thread-46] i.k.elasticvc.api.ComponentService : Saving batch of 1061 Concepts
2018-11-22 06:53:45.575 INFO 2123 --- [ool-5-thread-46] i.k.elasticvc.api.ComponentService : Saving batch of 3308 Descriptions
2018-11-22 06:53:45.971 INFO 2123 --- [ool-5-thread-46] i.k.elasticvc.api.ComponentService : Saving batch of 4892 Relationships
2018-11-22 06:53:46.167 INFO 2123 --- [ool-5-thread-40] o.ihtsdo.otf.snomedboot.ReleaseImporter : 224459 reference set members read from der2_iisssccRefset_ExtendedMapFull_INT_20180731.txt
2018-11-22 06:53:46.618 INFO 2123 --- [ool-5-thread-46] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:53:47.620 INFO 2123 --- [ool-5-thread-36] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:53:48.379 INFO 2123 --- [ool-5-thread-46] o.ihtsdo.otf.snomedboot.ReleaseImporter : 167899 reference set members read from der2_cRefset_AssociationFull_INT_20180731.txt
2018-11-22 06:53:48.677 INFO 2123 --- [ool-5-thread-38] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:53:49.997 INFO 2123 --- [ool-5-thread-36] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:53:51.314 INFO 2123 --- [ool-5-thread-44] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:53:52.314 INFO 2123 --- [ool-5-thread-36] o.ihtsdo.otf.snomedboot.ReleaseImporter : 484195 reference set members read from der2_sRefset_SimpleMapFull_INT_20180731.txt
2018-11-22 06:53:52.596 INFO 2123 --- [ool-5-thread-38] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:53:53.910 INFO 2123 --- [ool-5-thread-38] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:53:54.716 INFO 2123 --- [ool-5-thread-38] o.ihtsdo.otf.snomedboot.ReleaseImporter : 665802 reference set members read from der2_cRefset_AttributeValueFull_INT_20180731.txt
2018-11-22 06:53:55.460 INFO 2123 --- [ool-5-thread-44] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:53:57.064 INFO 2123 --- [ool-5-thread-44] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:53:58.616 INFO 2123 --- [ool-5-thread-44] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:54:00.324 INFO 2123 --- [ool-5-thread-44] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:54:01.814 INFO 2123 --- [ool-5-thread-44] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:54:03.506 INFO 2123 --- [ool-5-thread-44] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:54:05.122 INFO 2123 --- [ool-5-thread-44] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:54:07.821 INFO 2123 --- [ool-5-thread-44] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:54:10.116 INFO 2123 --- [ool-5-thread-44] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:54:13.054 INFO 2123 --- [ool-5-thread-44] o.ihtsdo.otf.snomedboot.ReleaseImporter : 3207060 reference set members read from der2_cRefset_LanguageFull-en_INT_20180731.txt
2018-11-22 06:54:14.098 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 4067 ReferenceSetMembers
2018-11-22 06:54:17.763 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: started
2018-11-22 06:54:17.763 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: get branch criteria took 0.0 seconds
2018-11-22 06:54:17.766 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed is-a relationships. took 0.003 seconds
2018-11-22 06:54:17.769 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed axiom is-a fragments. took 0.003 seconds
2018-11-22 06:54:17.783 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: started
2018-11-22 06:54:17.783 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: get branch criteria took 0.0 seconds
2018-11-22 06:54:23.351 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect changed is-a relationships. took 5.568 seconds
2018-11-22 06:54:23.352 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : Performing incremental update of inferred semantic index
2018-11-22 06:54:26.071 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect existingAncestors from QueryConcept. took 2.72 seconds
2018-11-22 06:54:36.735 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect existingDescendants from QueryConcept. took 10.664 seconds
2018-11-22 06:54:38.848 WARN 2123 --- [/O dispatcher 1] org.elasticsearch.client.RestClient : request [GET http://localhost:9200/es-rel/relationship/_search?typed_keys=true&ignore_unavailable=false&expand_wildcards=open&allow_no_indices=true&scroll=60000ms&search_type=query_then_fetch&batched_reduce_size=512] returned 1 warnings: [299 Elasticsearch-6.5.1-8c58350 "Deprecated: the number of terms [137251] used in the Terms Query request has exceeded the allowed maximum of [65536]. This maximum can be set by changing the [index.max_terms_count] index level setting." "Thu, 22 Nov 2018 06:54:36 GMT"]
2018-11-22 06:55:06.779 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Build existing nodes from Relationships. took 30.044 seconds
2018-11-22 06:55:06.779 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : 131918 existing nodes loaded.
2018-11-22 06:55:22.278 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Update graph using changed relationships. took 15.499 seconds
2018-11-22 06:55:24.144 WARN 2123 --- [/O dispatcher 1] org.elasticsearch.client.RestClient : request [GET http://localhost:9200/es-concept/concept/_search?typed_keys=true&ignore_unavailable=false&expand_wildcards=open&allow_no_indices=true&search_type=dfs_query_then_fetch&batched_reduce_size=512] returned 1 warnings: [299 Elasticsearch-6.5.1-8c58350 "Deprecated: the number of terms [75960] used in the Terms Query request has exceeded the allowed maximum of [65536]. This maximum can be set by changing the [index.max_terms_count] index level setting." "Thu, 22 Nov 2018 06:55:22 GMT"]
2018-11-22 06:55:26.770 WARN 2123 --- [/O dispatcher 1] org.elasticsearch.client.RestClient : request [GET http://localhost:9200/es-concept/concept/_search?typed_keys=true&ignore_unavailable=false&expand_wildcards=open&allow_no_indices=true&scroll=60000ms&search_type=query_then_fetch&batched_reduce_size=512] returned 1 warnings: [299 Elasticsearch-6.5.1-8c58350 "Deprecated: the number of terms [75960] used in the Terms Query request has exceeded the allowed maximum of [65536]. This maximum can be set by changing the [index.max_terms_count] index level setting." "Thu, 22 Nov 2018 06:55:24 GMT"]
2018-11-22 06:55:39.289 WARN 2123 --- [/O dispatcher 1] org.elasticsearch.client.RestClient : request [GET http://localhost:9200/es-query/query-concept/_search?typed_keys=true&ignore_unavailable=false&expand_wildcards=open&allow_no_indices=true&scroll=60000ms&search_type=query_then_fetch&batched_reduce_size=512] returned 1 warnings: [299 Elasticsearch-6.5.1-8c58350 "Deprecated: the number of terms [144941] used in the Terms Query request has exceeded the allowed maximum of [65536]. This maximum can be set by changing the [index.max_terms_count] index level setting." "Thu, 22 Nov 2018 06:55:37 GMT"]
2018-11-22 06:56:04.435 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect existingDescendants from QueryConcept. took 42.157 seconds
2018-11-22 06:56:04.490 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:56:07.372 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:56:10.451 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:56:13.289 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:56:16.095 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:56:19.365 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:56:21.854 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:56:24.614 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:56:27.672 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:56:31.806 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:56:34.571 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:56:37.750 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:56:40.678 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:56:44.186 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:56:47.525 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 4915 QueryConcepts
2018-11-22 06:56:49.533 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Save updated QueryConcepts took 45.098 seconds
2018-11-22 06:56:49.533 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: total took 151.75 seconds
2018-11-22 06:56:49.545 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Completed commit on MAIN at 1542869518879
2018-11-22 06:56:49.551 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Creating Code System version - Code System: SNOMEDCT, Version: 2003-07-31, Release Branch: MAIN/2003-07-31
2018-11-22 06:56:49.551 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Versioning content...
2018-11-22 06:56:49.561 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Open commit on MAIN at 1542869809561
2018-11-22 06:56:49.583 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: started
2018-11-22 06:56:49.583 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: get branch criteria took 0.0 seconds
2018-11-22 06:56:49.585 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed is-a relationships. took 0.002 seconds
2018-11-22 06:56:49.586 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed axiom is-a fragments. took 0.001 seconds
2018-11-22 06:56:49.587 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: started
2018-11-22 06:56:49.588 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: get branch criteria took 0.001 seconds
2018-11-22 06:56:49.589 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect changed is-a relationships. took 0.001 seconds
2018-11-22 06:56:49.599 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Completed commit on MAIN at 1542869809561
2018-11-22 06:56:49.599 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Creating version branch content...
2018-11-22 06:56:49.603 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Creating branch Branch{path=MAIN/2003-07-31, base=1542869809561, head=1542869809599, start=1542869809599, end=null}
2018-11-22 06:56:49.611 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Persisting Code System Version...
2018-11-22 06:56:49.619 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Versioning complete.
2018-11-22 06:56:49.628 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Open commit on MAIN at 1542869809628
2018-11-22 06:56:49.628 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Loading release delta 20040131
2018-11-22 06:56:49.628 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading concepts for release 20040131
2018-11-22 06:56:50.259 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Concepts
2018-11-22 06:56:51.140 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : 581635 concepts read from sct2_Concept_Full_INT_20180731.txt
2018-11-22 06:56:51.140 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : includedReferenceSetPathPatterns: []
2018-11-22 06:56:51.141 INFO 2123 --- [ool-5-thread-50] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading relationships for release 20040131
2018-11-22 06:56:51.142 INFO 2123 --- [ool-5-thread-49] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading relationships for release 20040131
2018-11-22 06:56:51.168 INFO 2123 --- [ool-5-thread-51] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading descriptions for release 20040131
2018-11-22 06:56:51.174 INFO 2123 --- [ool-5-thread-52] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading descriptions for release 20040131
2018-11-22 06:56:51.249 INFO 2123 --- [ool-5-thread-52] o.ihtsdo.otf.snomedboot.ReleaseImporter : 5151 descriptions read from sct2_TextDefinition_Full-en_INT_20180731.txt
2018-11-22 06:56:53.036 INFO 2123 --- [ool-5-thread-49] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:56:55.218 INFO 2123 --- [ool-5-thread-50] o.ihtsdo.otf.snomedboot.ReleaseImporter : 1130957 relationships read from sct2_StatedRelationship_Full_INT_20180731.txt
2018-11-22 06:56:55.880 INFO 2123 --- [ool-5-thread-51] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:56:55.981 INFO 2123 --- [ool-5-thread-49] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:56:58.085 INFO 2123 --- [ool-5-thread-51] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:56:58.579 INFO 2123 --- [ool-5-thread-49] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:57:00.411 INFO 2123 --- [ool-5-thread-51] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:57:01.295 INFO 2123 --- [ool-5-thread-51] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:57:01.984 INFO 2123 --- [ool-5-thread-51] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 06:57:03.153 INFO 2123 --- [ool-5-thread-49] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:57:05.244 INFO 2123 --- [ool-5-thread-51] o.ihtsdo.otf.snomedboot.ReleaseImporter : 2513952 descriptions read from sct2_Description_Full-en_INT_20180731.txt
2018-11-22 06:57:05.346 INFO 2123 --- [ool-5-thread-49] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:57:07.580 INFO 2123 --- [ool-5-thread-49] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:57:09.771 INFO 2123 --- [ool-5-thread-49] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:57:12.393 INFO 2123 --- [ool-5-thread-49] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:57:14.222 INFO 2123 --- [ool-5-thread-49] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:57:17.106 INFO 2123 --- [ool-5-thread-49] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:57:19.696 INFO 2123 --- [ool-5-thread-49] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:57:23.959 INFO 2123 --- [ool-5-thread-49] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:57:26.278 INFO 2123 --- [ool-5-thread-49] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:57:27.593 INFO 2123 --- [ool-5-thread-49] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:57:29.057 INFO 2123 --- [ool-5-thread-49] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:57:31.104 INFO 2123 --- [ool-5-thread-49] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:57:33.412 INFO 2123 --- [ool-5-thread-49] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:57:34.830 INFO 2123 --- [ool-5-thread-49] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 06:57:40.011 INFO 2123 --- [ool-5-thread-49] o.ihtsdo.otf.snomedboot.ReleaseImporter : 5112181 relationships read from sct2_Relationship_Full_INT_20180731.txt
2018-11-22 06:57:40.012 INFO 2123 --- [ool-5-thread-51] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20040131
2018-11-22 06:57:40.012 INFO 2123 --- [ool-5-thread-52] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20040131
2018-11-22 06:57:40.012 INFO 2123 --- [ool-5-thread-50] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20040131
2018-11-22 06:57:40.012 INFO 2123 --- [ool-5-thread-51] o.ihtsdo.otf.snomedboot.ReleaseImporter : 11 reference set members read from sct2_sRefset_OWLAxiomFull_INT_20180731.txt
2018-11-22 06:57:40.012 INFO 2123 --- [ool-5-thread-49] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20040131
2018-11-22 06:57:40.012 INFO 2123 --- [ool-5-thread-52] o.ihtsdo.otf.snomedboot.ReleaseImporter : 7 reference set members read from sct2_sRefset_OWLOntologyFull_INT_20180731.txt
2018-11-22 06:57:40.012 INFO 2123 --- [ool-5-thread-52] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20040131
2018-11-22 06:57:40.012 INFO 2123 --- [ool-5-thread-52] o.ihtsdo.otf.snomedboot.ReleaseImporter : 4 reference set members read from der2_ciRefset_DescriptionTypeFull_INT_20180731.txt
2018-11-22 06:57:40.012 INFO 2123 --- [ool-5-thread-51] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20040131
2018-11-22 06:57:40.012 INFO 2123 --- [ool-5-thread-52] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20040131
2018-11-22 06:57:40.012 INFO 2123 --- [ool-5-thread-51] o.ihtsdo.otf.snomedboot.ReleaseImporter : 3 reference set members read from der2_cRefset_MRCMModuleScopeFull_INT_20180731.txt
2018-11-22 06:57:40.012 INFO 2123 --- [ool-5-thread-50] o.ihtsdo.otf.snomedboot.ReleaseImporter : 167 reference set members read from der2_cciRefset_RefsetDescriptorFull_INT_20180731.txt
2018-11-22 06:57:40.013 INFO 2123 --- [ool-5-thread-53] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20040131
2018-11-22 06:57:40.013 INFO 2123 --- [ool-5-thread-49] o.ihtsdo.otf.snomedboot.ReleaseImporter : 144 reference set members read from der2_ssccRefset_MRCMAttributeRangeFull_INT_20180731.txt
2018-11-22 06:57:40.014 INFO 2123 --- [ool-5-thread-52] o.ihtsdo.otf.snomedboot.ReleaseImporter : 36 reference set members read from der2_sssssssRefset_MRCMDomainFull_INT_20180731.txt
2018-11-22 06:57:40.014 INFO 2123 --- [ool-5-thread-54] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20040131
2018-11-22 06:57:40.014 INFO 2123 --- [ool-5-thread-49] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20040131
2018-11-22 06:57:40.014 INFO 2123 --- [ool-5-thread-52] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20040131
2018-11-22 06:57:40.015 INFO 2123 --- [ool-5-thread-51] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20040131
2018-11-22 06:57:40.015 INFO 2123 --- [ool-5-thread-51] o.ihtsdo.otf.snomedboot.ReleaseImporter : 56 reference set members read from der2_ssRefset_ModuleDependencyFull_INT_20180731.txt
2018-11-22 06:57:40.015 INFO 2123 --- [ool-5-thread-52] o.ihtsdo.otf.snomedboot.ReleaseImporter : 154 reference set members read from der2_cissccRefset_MRCMAttributeDomainFull_INT_20180731.txt
2018-11-22 06:57:40.019 INFO 2123 --- [ool-5-thread-50] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20040131
2018-11-22 06:57:40.019 INFO 2123 --- [ool-5-thread-55] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20040131
2018-11-22 06:57:40.026 INFO 2123 --- [ool-5-thread-56] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20040131
2018-11-22 06:57:40.057 INFO 2123 --- [ool-5-thread-53] o.ihtsdo.otf.snomedboot.ReleaseImporter : 19870 reference set members read from der2_Refset_SimpleFull_INT_20180731.txt
2018-11-22 06:57:40.268 INFO 2123 --- [ool-5-thread-55] i.k.elasticvc.api.ComponentService : Saving batch of 1766 Concepts
2018-11-22 06:57:40.504 INFO 2123 --- [ool-5-thread-55] i.k.elasticvc.api.ComponentService : Saving batch of 1077 Descriptions
2018-11-22 06:57:40.947 INFO 2123 --- [ool-5-thread-55] i.k.elasticvc.api.ComponentService : Saving batch of 4365 Relationships
2018-11-22 06:57:40.997 INFO 2123 --- [ool-5-thread-50] o.ihtsdo.otf.snomedboot.ReleaseImporter : 224459 reference set members read from der2_iisssccRefset_ExtendedMapFull_INT_20180731.txt
2018-11-22 06:57:41.576 INFO 2123 --- [ool-5-thread-55] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:57:42.643 INFO 2123 --- [ool-5-thread-49] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:57:43.401 INFO 2123 --- [ool-5-thread-55] o.ihtsdo.otf.snomedboot.ReleaseImporter : 167899 reference set members read from der2_cRefset_AssociationFull_INT_20180731.txt
2018-11-22 06:57:43.690 INFO 2123 --- [ool-5-thread-56] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:57:44.887 INFO 2123 --- [ool-5-thread-49] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:57:46.053 INFO 2123 --- [ool-5-thread-56] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:57:47.346 INFO 2123 --- [ool-5-thread-56] o.ihtsdo.otf.snomedboot.ReleaseImporter : 484195 reference set members read from der2_sRefset_SimpleMapFull_INT_20180731.txt
2018-11-22 06:57:47.701 INFO 2123 --- [ool-5-thread-49] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:57:48.965 INFO 2123 --- [ool-5-thread-49] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:57:49.895 INFO 2123 --- [ool-5-thread-49] o.ihtsdo.otf.snomedboot.ReleaseImporter : 665802 reference set members read from der2_cRefset_AttributeValueFull_INT_20180731.txt
2018-11-22 06:57:50.489 INFO 2123 --- [ool-5-thread-54] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:57:52.253 INFO 2123 --- [ool-5-thread-54] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:57:53.990 INFO 2123 --- [ool-5-thread-54] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:57:55.653 INFO 2123 --- [ool-5-thread-54] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:57:57.317 INFO 2123 --- [ool-5-thread-54] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:57:58.875 INFO 2123 --- [ool-5-thread-54] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:58:00.455 INFO 2123 --- [ool-5-thread-54] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 06:58:02.412 INFO 2123 --- [ool-5-thread-54] o.ihtsdo.otf.snomedboot.ReleaseImporter : 3207060 reference set members read from der2_cRefset_LanguageFull-en_INT_20180731.txt
2018-11-22 06:58:02.605 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 2817 ReferenceSetMembers
2018-11-22 06:58:03.140 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: started
2018-11-22 06:58:03.140 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: get branch criteria took 0.0 seconds
2018-11-22 06:58:03.186 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed is-a relationships. took 0.046 seconds
2018-11-22 06:58:03.188 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed axiom is-a fragments. took 0.002 seconds
2018-11-22 06:58:03.193 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: started
2018-11-22 06:58:03.193 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: get branch criteria took 0.0 seconds
2018-11-22 06:58:03.693 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect changed is-a relationships. took 0.5 seconds
2018-11-22 06:58:03.694 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : Performing incremental update of inferred semantic index
2018-11-22 06:58:04.364 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect existingAncestors from QueryConcept. took 0.671 seconds
2018-11-22 06:58:15.973 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect existingDescendants from QueryConcept. took 11.609 seconds
2018-11-22 06:58:21.083 WARN 2123 --- [/O dispatcher 1] org.elasticsearch.client.RestClient : request [GET http://localhost:9200/es-rel/relationship/_search?typed_keys=true&ignore_unavailable=false&expand_wildcards=open&allow_no_indices=true&scroll=60000ms&search_type=query_then_fetch&batched_reduce_size=512] returned 1 warnings: [299 Elasticsearch-6.5.1-8c58350 "Deprecated: the number of terms [154625] used in the Terms Query request has exceeded the allowed maximum of [65536]. This maximum can be set by changing the [index.max_terms_count] index level setting." "Thu, 22 Nov 2018 06:58:16 GMT"]
2018-11-22 06:59:02.628 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Build existing nodes from Relationships. took 46.655 seconds
2018-11-22 06:59:02.628 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : 151420 existing nodes loaded.
2018-11-22 06:59:06.008 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Update graph using changed relationships. took 3.38 seconds
2018-11-22 06:59:10.835 WARN 2123 --- [/O dispatcher 1] org.elasticsearch.client.RestClient : request [GET http://localhost:9200/es-query/query-concept/_search?typed_keys=true&ignore_unavailable=false&expand_wildcards=open&allow_no_indices=true&scroll=60000ms&search_type=query_then_fetch&batched_reduce_size=512] returned 1 warnings: [299 Elasticsearch-6.5.1-8c58350 "Deprecated: the number of terms [155676] used in the Terms Query request has exceeded the allowed maximum of [65536]. This maximum can be set by changing the [index.max_terms_count] index level setting." "Thu, 22 Nov 2018 06:59:07 GMT"]
2018-11-22 06:59:48.978 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect existingDescendants from QueryConcept. took 42.97 seconds
2018-11-22 06:59:49.023 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:59:51.929 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:59:54.507 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:59:56.984 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 06:59:59.133 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:00:02.086 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:00:04.533 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:00:07.065 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:00:09.233 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:00:11.562 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:00:14.072 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:00:16.885 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:00:20.917 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:00:24.426 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:00:27.313 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:00:31.020 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5630 QueryConcepts
2018-11-22 07:00:33.569 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Save updated QueryConcepts took 44.591 seconds
2018-11-22 07:00:33.569 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: total took 150.376 seconds
2018-11-22 07:00:33.606 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Completed commit on MAIN at 1542869809628
2018-11-22 07:00:33.629 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Creating Code System version - Code System: SNOMEDCT, Version: 2004-01-31, Release Branch: MAIN/2004-01-31
2018-11-22 07:00:33.629 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Versioning content...
2018-11-22 07:00:33.673 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Open commit on MAIN at 1542870033673
2018-11-22 07:00:33.724 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: started
2018-11-22 07:00:33.724 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: get branch criteria took 0.0 seconds
2018-11-22 07:00:33.726 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed is-a relationships. took 0.002 seconds
2018-11-22 07:00:33.728 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed axiom is-a fragments. took 0.002 seconds
2018-11-22 07:00:33.730 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: started
2018-11-22 07:00:33.730 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: get branch criteria took 0.0 seconds
2018-11-22 07:00:33.732 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect changed is-a relationships. took 0.002 seconds
2018-11-22 07:00:33.758 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Completed commit on MAIN at 1542870033673
2018-11-22 07:00:33.758 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Creating version branch content...
2018-11-22 07:00:33.761 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Creating branch Branch{path=MAIN/2004-01-31, base=1542870033673, head=1542870033758, start=1542870033758, end=null}
2018-11-22 07:00:33.771 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Persisting Code System Version...
2018-11-22 07:00:33.779 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Versioning complete.
2018-11-22 07:00:33.790 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Open commit on MAIN at 1542870033790
2018-11-22 07:00:33.790 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Loading release delta 20040731
2018-11-22 07:00:33.790 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading concepts for release 20040731
2018-11-22 07:00:34.257 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Concepts
2018-11-22 07:00:35.239 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Concepts
2018-11-22 07:00:35.829 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : 581635 concepts read from sct2_Concept_Full_INT_20180731.txt
2018-11-22 07:00:35.829 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : includedReferenceSetPathPatterns: []
2018-11-22 07:00:35.830 INFO 2123 --- [ool-5-thread-57] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading relationships for release 20040731
2018-11-22 07:00:35.830 INFO 2123 --- [ool-5-thread-58] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading relationships for release 20040731
2018-11-22 07:00:35.831 INFO 2123 --- [ool-5-thread-59] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading descriptions for release 20040731
2018-11-22 07:00:35.834 INFO 2123 --- [ool-5-thread-60] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading descriptions for release 20040731
2018-11-22 07:00:35.870 INFO 2123 --- [ool-5-thread-60] o.ihtsdo.otf.snomedboot.ReleaseImporter : 5151 descriptions read from sct2_TextDefinition_Full-en_INT_20180731.txt
2018-11-22 07:00:36.740 INFO 2123 --- [ool-5-thread-57] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:00:39.784 INFO 2123 --- [ool-5-thread-57] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:00:39.803 INFO 2123 --- [ool-5-thread-58] o.ihtsdo.otf.snomedboot.ReleaseImporter : 1130957 relationships read from sct2_StatedRelationship_Full_INT_20180731.txt
2018-11-22 07:00:41.761 INFO 2123 --- [ool-5-thread-57] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:00:41.896 INFO 2123 --- [ool-5-thread-59] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 07:00:44.437 INFO 2123 --- [ool-5-thread-59] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 07:00:44.850 INFO 2123 --- [ool-5-thread-57] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:00:45.532 INFO 2123 --- [ool-5-thread-59] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 07:00:46.485 INFO 2123 --- [ool-5-thread-59] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 07:00:47.179 INFO 2123 --- [ool-5-thread-57] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:00:49.094 INFO 2123 --- [ool-5-thread-57] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:00:49.514 INFO 2123 --- [ool-5-thread-59] o.ihtsdo.otf.snomedboot.ReleaseImporter : 2513952 descriptions read from sct2_Description_Full-en_INT_20180731.txt
2018-11-22 07:00:50.446 INFO 2123 --- [ool-5-thread-57] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:00:51.768 INFO 2123 --- [ool-5-thread-57] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:00:53.115 INFO 2123 --- [ool-5-thread-57] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:00:54.509 INFO 2123 --- [ool-5-thread-57] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:00:55.771 INFO 2123 --- [ool-5-thread-57] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:00:56.949 INFO 2123 --- [ool-5-thread-57] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:00:58.459 INFO 2123 --- [ool-5-thread-57] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:01:01.105 INFO 2123 --- [ool-5-thread-57] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:01:02.340 INFO 2123 --- [ool-5-thread-57] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:01:04.271 INFO 2123 --- [ool-5-thread-57] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:01:07.014 INFO 2123 --- [ool-5-thread-57] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:01:09.300 INFO 2123 --- [ool-5-thread-57] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:01:10.519 INFO 2123 --- [ool-5-thread-57] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:01:14.805 INFO 2123 --- [ool-5-thread-57] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:01:18.482 INFO 2123 --- [ool-5-thread-57] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:01:23.503 INFO 2123 --- [ool-5-thread-57] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:01:30.095 INFO 2123 --- [ool-5-thread-57] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:01:34.120 INFO 2123 --- [ool-5-thread-57] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:01:37.464 INFO 2123 --- [ool-5-thread-57] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:01:38.664 INFO 2123 --- [ool-5-thread-57] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:01:39.766 INFO 2123 --- [ool-5-thread-57] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:01:40.785 INFO 2123 --- [ool-5-thread-57] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:01:42.256 INFO 2123 --- [ool-5-thread-57] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:01:43.210 INFO 2123 --- [ool-5-thread-57] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:01:44.035 INFO 2123 --- [ool-5-thread-57] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:01:44.642 INFO 2123 --- [ool-5-thread-57] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:01:45.253 INFO 2123 --- [ool-5-thread-57] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:01:45.840 INFO 2123 --- [ool-5-thread-57] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:01:46.322 INFO 2123 --- [ool-5-thread-57] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:01:46.879 INFO 2123 --- [ool-5-thread-57] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:01:47.452 INFO 2123 --- [ool-5-thread-57] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:01:48.145 INFO 2123 --- [ool-5-thread-57] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:01:48.722 INFO 2123 --- [ool-5-thread-57] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:01:49.392 INFO 2123 --- [ool-5-thread-57] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:01:50.001 INFO 2123 --- [ool-5-thread-57] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:01:50.606 INFO 2123 --- [ool-5-thread-57] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:01:51.111 INFO 2123 --- [ool-5-thread-57] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:01:51.727 INFO 2123 --- [ool-5-thread-57] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:01:52.309 INFO 2123 --- [ool-5-thread-57] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:01:52.858 INFO 2123 --- [ool-5-thread-57] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:01:53.348 INFO 2123 --- [ool-5-thread-57] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:01:53.944 INFO 2123 --- [ool-5-thread-57] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:01:54.486 INFO 2123 --- [ool-5-thread-57] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:01:55.151 INFO 2123 --- [ool-5-thread-57] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:01:55.758 INFO 2123 --- [ool-5-thread-57] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:01:56.401 INFO 2123 --- [ool-5-thread-57] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:01:56.924 INFO 2123 --- [ool-5-thread-57] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:01:57.507 INFO 2123 --- [ool-5-thread-57] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:02:01.398 INFO 2123 --- [ool-5-thread-57] o.ihtsdo.otf.snomedboot.ReleaseImporter : 5112181 relationships read from sct2_Relationship_Full_INT_20180731.txt
2018-11-22 07:02:01.398 INFO 2123 --- [ool-5-thread-57] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20040731
2018-11-22 07:02:01.399 INFO 2123 --- [ool-5-thread-61] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20040731
2018-11-22 07:02:01.399 INFO 2123 --- [ool-5-thread-62] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20040731
2018-11-22 07:02:01.399 INFO 2123 --- [ool-5-thread-57] o.ihtsdo.otf.snomedboot.ReleaseImporter : 144 reference set members read from der2_ssccRefset_MRCMAttributeRangeFull_INT_20180731.txt
2018-11-22 07:02:01.399 INFO 2123 --- [ool-5-thread-57] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20040731
2018-11-22 07:02:01.399 INFO 2123 --- [ool-5-thread-63] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20040731
2018-11-22 07:02:01.399 INFO 2123 --- [ool-5-thread-57] o.ihtsdo.otf.snomedboot.ReleaseImporter : 4 reference set members read from der2_ciRefset_DescriptionTypeFull_INT_20180731.txt
2018-11-22 07:02:01.399 INFO 2123 --- [ool-5-thread-63] o.ihtsdo.otf.snomedboot.ReleaseImporter : 7 reference set members read from sct2_sRefset_OWLOntologyFull_INT_20180731.txt
2018-11-22 07:02:01.399 INFO 2123 --- [ool-5-thread-64] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20040731
2018-11-22 07:02:01.399 INFO 2123 --- [ool-5-thread-62] o.ihtsdo.otf.snomedboot.ReleaseImporter : 167 reference set members read from der2_cciRefset_RefsetDescriptorFull_INT_20180731.txt
2018-11-22 07:02:01.400 INFO 2123 --- [ool-5-thread-65] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20040731
2018-11-22 07:02:01.400 INFO 2123 --- [ool-5-thread-61] o.ihtsdo.otf.snomedboot.ReleaseImporter : 11 reference set members read from sct2_sRefset_OWLAxiomFull_INT_20180731.txt
2018-11-22 07:02:01.400 INFO 2123 --- [ool-5-thread-65] o.ihtsdo.otf.snomedboot.ReleaseImporter : 3 reference set members read from der2_cRefset_MRCMModuleScopeFull_INT_20180731.txt
2018-11-22 07:02:01.401 INFO 2123 --- [ool-5-thread-63] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20040731
2018-11-22 07:02:01.401 INFO 2123 --- [ool-5-thread-61] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20040731
2018-11-22 07:02:01.401 INFO 2123 --- [ool-5-thread-65] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20040731
2018-11-22 07:02:01.401 INFO 2123 --- [ool-5-thread-66] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20040731
2018-11-22 07:02:01.401 INFO 2123 --- [ool-5-thread-62] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20040731
2018-11-22 07:02:01.402 INFO 2123 --- [ool-5-thread-62] o.ihtsdo.otf.snomedboot.ReleaseImporter : 154 reference set members read from der2_cissccRefset_MRCMAttributeDomainFull_INT_20180731.txt
2018-11-22 07:02:01.402 INFO 2123 --- [ool-5-thread-62] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20040731
2018-11-22 07:02:01.403 INFO 2123 --- [ool-5-thread-65] o.ihtsdo.otf.snomedboot.ReleaseImporter : 36 reference set members read from der2_sssssssRefset_MRCMDomainFull_INT_20180731.txt
2018-11-22 07:02:01.401 INFO 2123 --- [ool-5-thread-57] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20040731
2018-11-22 07:02:01.414 INFO 2123 --- [ool-5-thread-67] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20040731
2018-11-22 07:02:01.415 INFO 2123 --- [ool-5-thread-67] o.ihtsdo.otf.snomedboot.ReleaseImporter : 56 reference set members read from der2_ssRefset_ModuleDependencyFull_INT_20180731.txt
2018-11-22 07:02:01.519 INFO 2123 --- [ool-5-thread-64] o.ihtsdo.otf.snomedboot.ReleaseImporter : 19870 reference set members read from der2_Refset_SimpleFull_INT_20180731.txt
2018-11-22 07:02:01.721 INFO 2123 --- [ool-5-thread-61] i.k.elasticvc.api.ComponentService : Saving batch of 706 Concepts
2018-11-22 07:02:01.927 INFO 2123 --- [ool-5-thread-61] i.k.elasticvc.api.ComponentService : Saving batch of 1881 Descriptions
2018-11-22 07:02:02.176 INFO 2123 --- [ool-5-thread-61] i.k.elasticvc.api.ComponentService : Saving batch of 499 Relationships
2018-11-22 07:02:02.347 INFO 2123 --- [ool-5-thread-57] o.ihtsdo.otf.snomedboot.ReleaseImporter : 224459 reference set members read from der2_iisssccRefset_ExtendedMapFull_INT_20180731.txt
2018-11-22 07:02:02.647 INFO 2123 --- [ool-5-thread-61] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:02:03.538 INFO 2123 --- [ool-5-thread-61] o.ihtsdo.otf.snomedboot.ReleaseImporter : 167899 reference set members read from der2_cRefset_AssociationFull_INT_20180731.txt
2018-11-22 07:02:03.899 INFO 2123 --- [ool-5-thread-63] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:02:05.303 INFO 2123 --- [ool-5-thread-66] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:02:06.798 INFO 2123 --- [ool-5-thread-66] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:02:07.725 INFO 2123 --- [ool-5-thread-62] o.ihtsdo.otf.snomedboot.ReleaseImporter : 484195 reference set members read from der2_sRefset_SimpleMapFull_INT_20180731.txt
2018-11-22 07:02:08.341 INFO 2123 --- [ool-5-thread-63] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:02:09.150 INFO 2123 --- [ool-5-thread-63] o.ihtsdo.otf.snomedboot.ReleaseImporter : 665802 reference set members read from der2_cRefset_AttributeValueFull_INT_20180731.txt
2018-11-22 07:02:09.962 INFO 2123 --- [ool-5-thread-66] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:02:11.675 INFO 2123 --- [ool-5-thread-66] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:02:13.391 INFO 2123 --- [ool-5-thread-66] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:02:15.379 INFO 2123 --- [ool-5-thread-66] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:02:18.315 INFO 2123 --- [ool-5-thread-66] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:02:19.916 INFO 2123 --- [ool-5-thread-66] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:02:21.912 INFO 2123 --- [ool-5-thread-66] o.ihtsdo.otf.snomedboot.ReleaseImporter : 3207060 reference set members read from der2_cRefset_LanguageFull-en_INT_20180731.txt
2018-11-22 07:02:23.040 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 4590 ReferenceSetMembers
2018-11-22 07:02:25.068 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: started
2018-11-22 07:02:25.068 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: get branch criteria took 0.0 seconds
2018-11-22 07:02:25.070 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed is-a relationships. took 0.002 seconds
2018-11-22 07:02:25.072 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed axiom is-a fragments. took 0.002 seconds
2018-11-22 07:02:25.076 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: started
2018-11-22 07:02:25.076 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: get branch criteria took 0.0 seconds
2018-11-22 07:02:30.561 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect changed is-a relationships. took 5.485 seconds
2018-11-22 07:02:30.561 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : Performing incremental update of inferred semantic index
2018-11-22 07:02:33.979 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect existingAncestors from QueryConcept. took 3.418 seconds
2018-11-22 07:02:43.741 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect existingDescendants from QueryConcept. took 9.762 seconds
2018-11-22 07:02:48.092 WARN 2123 --- [/O dispatcher 1] org.elasticsearch.client.RestClient : request [GET http://localhost:9200/es-rel/relationship/_search?typed_keys=true&ignore_unavailable=false&expand_wildcards=open&allow_no_indices=true&scroll=60000ms&search_type=query_then_fetch&batched_reduce_size=512] returned 1 warnings: [299 Elasticsearch-6.5.1-8c58350 "Deprecated: the number of terms [175764] used in the Terms Query request has exceeded the allowed maximum of [65536]. This maximum can be set by changing the [index.max_terms_count] index level setting." "Thu, 22 Nov 2018 07:02:43 GMT"]
2018-11-22 07:02:51.055 INFO 2123 --- [nio-8080-exec-9] o.apache.coyote.http11.Http11Processor : Error parsing HTTP request header
Note: further occurrences of HTTP header parsing errors will be logged at DEBUG level.
java.lang.IllegalArgumentException: Invalid character found in method name. HTTP method names must be tokens
at org.apache.coyote.http11.Http11InputBuffer.parseRequestLine(Http11InputBuffer.java:426) ~[tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.coyote.http11.Http11Processor.service(Http11Processor.java:687) ~[tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.coyote.AbstractProcessorLight.process(AbstractProcessorLight.java:66) [tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.coyote.AbstractProtocol$ConnectionHandler.process(AbstractProtocol.java:790) [tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.doRun(NioEndpoint.java:1459) [tomcat-embed-core-8.5.29.jar!/:8.5.29]
at org.apache.tomcat.util.net.SocketProcessorBase.run(SocketProcessorBase.java:49) [tomcat-embed-core-8.5.29.jar!/:8.5.29]
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) [na:1.8.0_181]
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) [na:1.8.0_181]
at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61) [tomcat-embed-core-8.5.29.jar!/:8.5.29]
at java.lang.Thread.run(Thread.java:748) [na:1.8.0_181]
2018-11-22 07:03:57.066 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Build existing nodes from Relationships. took 73.325 seconds
2018-11-22 07:03:57.066 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : 173436 existing nodes loaded.
2018-11-22 07:04:06.337 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Update graph using changed relationships. took 9.271 seconds
2018-11-22 07:04:07.398 WARN 2123 --- [/O dispatcher 1] org.elasticsearch.client.RestClient : request [GET http://localhost:9200/es-concept/concept/_search?typed_keys=true&ignore_unavailable=false&expand_wildcards=open&allow_no_indices=true&search_type=dfs_query_then_fetch&batched_reduce_size=512] returned 1 warnings: [299 Elasticsearch-6.5.1-8c58350 "Deprecated: the number of terms [83297] used in the Terms Query request has exceeded the allowed maximum of [65536]. This maximum can be set by changing the [index.max_terms_count] index level setting." "Thu, 22 Nov 2018 07:04:06 GMT"]
2018-11-22 07:04:08.554 WARN 2123 --- [/O dispatcher 1] org.elasticsearch.client.RestClient : request [GET http://localhost:9200/es-concept/concept/_search?typed_keys=true&ignore_unavailable=false&expand_wildcards=open&allow_no_indices=true&scroll=60000ms&search_type=query_then_fetch&batched_reduce_size=512] returned 1 warnings: [299 Elasticsearch-6.5.1-8c58350 "Deprecated: the number of terms [83297] used in the Terms Query request has exceeded the allowed maximum of [65536]. This maximum can be set by changing the [index.max_terms_count] index level setting." "Thu, 22 Nov 2018 07:04:07 GMT"]
2018-11-22 07:04:18.342 WARN 2123 --- [/O dispatcher 1] org.elasticsearch.client.RestClient : request [GET http://localhost:9200/es-query/query-concept/_search?typed_keys=true&ignore_unavailable=false&expand_wildcards=open&allow_no_indices=true&scroll=60000ms&search_type=query_then_fetch&batched_reduce_size=512] returned 1 warnings: [299 Elasticsearch-6.5.1-8c58350 "Deprecated: the number of terms [183672] used in the Terms Query request has exceeded the allowed maximum of [65536]. This maximum can be set by changing the [index.max_terms_count] index level setting." "Thu, 22 Nov 2018 07:04:15 GMT"]
2018-11-22 07:04:55.640 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect existingDescendants from QueryConcept. took 49.303 seconds
2018-11-22 07:04:55.686 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:04:58.127 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:05:00.612 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:05:03.575 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:05:06.704 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:05:09.577 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:05:12.318 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:05:15.287 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:05:18.194 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:05:21.277 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:05:24.181 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:05:28.515 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:05:33.274 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:05:38.599 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:05:41.465 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:05:44.670 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:05:48.313 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:05:51.730 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:05:56.796 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 3639 QueryConcepts
2018-11-22 07:05:58.224 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Save updated QueryConcepts took 62.584 seconds
2018-11-22 07:05:58.224 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: total took 213.148 seconds
2018-11-22 07:05:58.238 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Completed commit on MAIN at 1542870033790
2018-11-22 07:05:58.242 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Creating Code System version - Code System: SNOMEDCT, Version: 2004-07-31, Release Branch: MAIN/2004-07-31
2018-11-22 07:05:58.242 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Versioning content...
2018-11-22 07:05:58.253 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Open commit on MAIN at 1542870358253
2018-11-22 07:05:58.326 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: started
2018-11-22 07:05:58.326 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: get branch criteria took 0.0 seconds
2018-11-22 07:05:58.329 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed is-a relationships. took 0.003 seconds
2018-11-22 07:05:58.331 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed axiom is-a fragments. took 0.002 seconds
2018-11-22 07:05:58.335 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: started
2018-11-22 07:05:58.335 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: get branch criteria took 0.0 seconds
2018-11-22 07:05:58.337 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect changed is-a relationships. took 0.002 seconds
2018-11-22 07:05:58.352 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Completed commit on MAIN at 1542870358253
2018-11-22 07:05:58.352 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Creating version branch content...
2018-11-22 07:05:58.356 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Creating branch Branch{path=MAIN/2004-07-31, base=1542870358253, head=1542870358352, start=1542870358352, end=null}
2018-11-22 07:05:58.366 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Persisting Code System Version...
2018-11-22 07:05:58.378 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Versioning complete.
2018-11-22 07:05:58.390 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Open commit on MAIN at 1542870358390
2018-11-22 07:05:58.390 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Loading release delta 20050131
2018-11-22 07:05:58.390 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading concepts for release 20050131
2018-11-22 07:05:59.190 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Concepts
2018-11-22 07:06:00.253 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : 581635 concepts read from sct2_Concept_Full_INT_20180731.txt
2018-11-22 07:06:00.253 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : includedReferenceSetPathPatterns: []
2018-11-22 07:06:00.254 INFO 2123 --- [ool-5-thread-68] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading relationships for release 20050131
2018-11-22 07:06:00.254 INFO 2123 --- [ool-5-thread-69] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading relationships for release 20050131
2018-11-22 07:06:00.254 INFO 2123 --- [ool-5-thread-70] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading descriptions for release 20050131
2018-11-22 07:06:00.254 INFO 2123 --- [ool-5-thread-71] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading descriptions for release 20050131
2018-11-22 07:06:00.363 INFO 2123 --- [ool-5-thread-71] o.ihtsdo.otf.snomedboot.ReleaseImporter : 5151 descriptions read from sct2_TextDefinition_Full-en_INT_20180731.txt
2018-11-22 07:06:01.399 INFO 2123 --- [ool-5-thread-68] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:06:04.002 INFO 2123 --- [ool-5-thread-69] o.ihtsdo.otf.snomedboot.ReleaseImporter : 1130957 relationships read from sct2_StatedRelationship_Full_INT_20180731.txt
2018-11-22 07:06:04.302 INFO 2123 --- [ool-5-thread-68] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:06:05.888 INFO 2123 --- [ool-5-thread-68] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:06:06.159 INFO 2123 --- [ool-5-thread-70] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 07:06:07.479 INFO 2123 --- [ool-5-thread-70] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 07:06:08.128 INFO 2123 --- [ool-5-thread-68] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:06:10.039 INFO 2123 --- [ool-5-thread-70] o.ihtsdo.otf.snomedboot.ReleaseImporter : 2513952 descriptions read from sct2_Description_Full-en_INT_20180731.txt
2018-11-22 07:06:10.648 INFO 2123 --- [ool-5-thread-68] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:06:12.458 INFO 2123 --- [ool-5-thread-68] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:06:14.535 INFO 2123 --- [ool-5-thread-68] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:06:16.518 INFO 2123 --- [ool-5-thread-68] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:06:18.570 INFO 2123 --- [ool-5-thread-68] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:06:21.417 INFO 2123 --- [ool-5-thread-68] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:06:24.122 INFO 2123 --- [ool-5-thread-68] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:06:26.899 INFO 2123 --- [ool-5-thread-68] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:06:31.622 INFO 2123 --- [ool-5-thread-68] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:06:35.420 INFO 2123 --- [ool-5-thread-68] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:06:38.941 INFO 2123 --- [ool-5-thread-68] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:06:40.076 INFO 2123 --- [ool-5-thread-68] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:06:41.218 INFO 2123 --- [ool-5-thread-68] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:06:42.590 INFO 2123 --- [ool-5-thread-68] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:06:44.051 INFO 2123 --- [ool-5-thread-68] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:06:45.357 INFO 2123 --- [ool-5-thread-68] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:06:46.802 INFO 2123 --- [ool-5-thread-68] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:06:47.998 INFO 2123 --- [ool-5-thread-68] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:06:49.238 INFO 2123 --- [ool-5-thread-68] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:06:50.733 INFO 2123 --- [ool-5-thread-68] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:06:52.129 INFO 2123 --- [ool-5-thread-68] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:06:53.362 INFO 2123 --- [ool-5-thread-68] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:06:54.538 INFO 2123 --- [ool-5-thread-68] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:06:56.203 INFO 2123 --- [ool-5-thread-68] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:06:58.397 INFO 2123 --- [ool-5-thread-68] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:07:00.535 INFO 2123 --- [ool-5-thread-68] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:07:02.095 INFO 2123 --- [ool-5-thread-68] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:07:03.987 INFO 2123 --- [ool-5-thread-68] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:07:05.502 INFO 2123 --- [ool-5-thread-68] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:07:06.811 INFO 2123 --- [ool-5-thread-68] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:07:07.988 INFO 2123 --- [ool-5-thread-68] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:07:09.458 INFO 2123 --- [ool-5-thread-68] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:07:12.259 INFO 2123 --- [ool-5-thread-68] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:07:14.536 INFO 2123 --- [ool-5-thread-68] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:07:15.986 INFO 2123 --- [ool-5-thread-68] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:07:18.898 INFO 2123 --- [ool-5-thread-68] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:07:21.181 INFO 2123 --- [ool-5-thread-68] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:07:24.557 INFO 2123 --- [ool-5-thread-68] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:07:26.865 INFO 2123 --- [ool-5-thread-68] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:07:30.486 INFO 2123 --- [ool-5-thread-68] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:07:33.357 INFO 2123 --- [ool-5-thread-68] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:07:38.126 INFO 2123 --- [ool-5-thread-68] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:07:39.692 INFO 2123 --- [ool-5-thread-68] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:07:40.407 INFO 2123 --- [ool-5-thread-68] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:07:41.015 INFO 2123 --- [ool-5-thread-68] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:07:41.647 INFO 2123 --- [ool-5-thread-68] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:07:42.212 INFO 2123 --- [ool-5-thread-68] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:07:42.746 INFO 2123 --- [ool-5-thread-68] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:07:43.269 INFO 2123 --- [ool-5-thread-68] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:07:43.949 INFO 2123 --- [ool-5-thread-68] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:07:44.522 INFO 2123 --- [ool-5-thread-68] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:07:45.081 INFO 2123 --- [ool-5-thread-68] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:07:45.677 INFO 2123 --- [ool-5-thread-68] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:07:46.324 INFO 2123 --- [ool-5-thread-68] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:07:46.898 INFO 2123 --- [ool-5-thread-68] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:07:47.455 INFO 2123 --- [ool-5-thread-68] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:07:48.020 INFO 2123 --- [ool-5-thread-68] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:07:48.610 INFO 2123 --- [ool-5-thread-68] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:07:49.267 INFO 2123 --- [ool-5-thread-68] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:07:49.858 INFO 2123 --- [ool-5-thread-68] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:07:50.426 INFO 2123 --- [ool-5-thread-68] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:07:54.036 INFO 2123 --- [ool-5-thread-68] o.ihtsdo.otf.snomedboot.ReleaseImporter : 5112181 relationships read from sct2_Relationship_Full_INT_20180731.txt
2018-11-22 07:07:54.036 INFO 2123 --- [ool-5-thread-68] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20050131
2018-11-22 07:07:54.036 INFO 2123 --- [ool-5-thread-72] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20050131
2018-11-22 07:07:54.036 INFO 2123 --- [ool-5-thread-72] o.ihtsdo.otf.snomedboot.ReleaseImporter : 11 reference set members read from sct2_sRefset_OWLAxiomFull_INT_20180731.txt
2018-11-22 07:07:54.037 INFO 2123 --- [ool-5-thread-73] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20050131
2018-11-22 07:07:54.037 INFO 2123 --- [ool-5-thread-72] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20050131
2018-11-22 07:07:54.037 INFO 2123 --- [ool-5-thread-68] o.ihtsdo.otf.snomedboot.ReleaseImporter : 144 reference set members read from der2_ssccRefset_MRCMAttributeRangeFull_INT_20180731.txt
2018-11-22 07:07:54.037 INFO 2123 --- [ool-5-thread-72] o.ihtsdo.otf.snomedboot.ReleaseImporter : 7 reference set members read from sct2_sRefset_OWLOntologyFull_INT_20180731.txt
2018-11-22 07:07:54.038 INFO 2123 --- [ool-5-thread-72] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20050131
2018-11-22 07:07:54.038 INFO 2123 --- [ool-5-thread-74] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20050131
2018-11-22 07:07:54.038 INFO 2123 --- [ool-5-thread-72] o.ihtsdo.otf.snomedboot.ReleaseImporter : 4 reference set members read from der2_ciRefset_DescriptionTypeFull_INT_20180731.txt
2018-11-22 07:07:54.038 INFO 2123 --- [ool-5-thread-68] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20050131
2018-11-22 07:07:54.038 INFO 2123 --- [ool-5-thread-73] o.ihtsdo.otf.snomedboot.ReleaseImporter : 167 reference set members read from der2_cciRefset_RefsetDescriptorFull_INT_20180731.txt
2018-11-22 07:07:54.038 INFO 2123 --- [ool-5-thread-72] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20050131
2018-11-22 07:07:54.038 INFO 2123 --- [ool-5-thread-73] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20050131
2018-11-22 07:07:54.039 INFO 2123 --- [ool-5-thread-68] o.ihtsdo.otf.snomedboot.ReleaseImporter : 3 reference set members read from der2_cRefset_MRCMModuleScopeFull_INT_20180731.txt
2018-11-22 07:07:54.040 INFO 2123 --- [ool-5-thread-73] o.ihtsdo.otf.snomedboot.ReleaseImporter : 36 reference set members read from der2_sssssssRefset_MRCMDomainFull_INT_20180731.txt
2018-11-22 07:07:54.040 INFO 2123 --- [ool-5-thread-73] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20050131
2018-11-22 07:07:54.040 INFO 2123 --- [ool-5-thread-68] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20050131
2018-11-22 07:07:54.046 INFO 2123 --- [ool-5-thread-77] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20050131
2018-11-22 07:07:54.047 INFO 2123 --- [ool-5-thread-76] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20050131
2018-11-22 07:07:54.047 INFO 2123 --- [ool-5-thread-77] o.ihtsdo.otf.snomedboot.ReleaseImporter : 56 reference set members read from der2_ssRefset_ModuleDependencyFull_INT_20180731.txt
2018-11-22 07:07:54.047 INFO 2123 --- [ool-5-thread-76] o.ihtsdo.otf.snomedboot.ReleaseImporter : 154 reference set members read from der2_cissccRefset_MRCMAttributeDomainFull_INT_20180731.txt
2018-11-22 07:07:54.049 INFO 2123 --- [ool-5-thread-78] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20050131
2018-11-22 07:07:54.050 INFO 2123 --- [ool-5-thread-75] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20050131
2018-11-22 07:07:54.116 INFO 2123 --- [ool-5-thread-74] o.ihtsdo.otf.snomedboot.ReleaseImporter : 19870 reference set members read from der2_Refset_SimpleFull_INT_20180731.txt
2018-11-22 07:07:54.592 INFO 2123 --- [ool-5-thread-72] o.ihtsdo.otf.snomedboot.ReleaseImporter : 167899 reference set members read from der2_cRefset_AssociationFull_INT_20180731.txt
2018-11-22 07:07:54.666 INFO 2123 --- [ool-5-thread-75] i.k.elasticvc.api.ComponentService : Saving batch of 3488 Concepts
2018-11-22 07:07:54.988 INFO 2123 --- [ool-5-thread-68] o.ihtsdo.otf.snomedboot.ReleaseImporter : 224459 reference set members read from der2_iisssccRefset_ExtendedMapFull_INT_20180731.txt
2018-11-22 07:07:55.335 INFO 2123 --- [ool-5-thread-75] i.k.elasticvc.api.ComponentService : Saving batch of 1208 Descriptions
2018-11-22 07:07:55.762 INFO 2123 --- [ool-5-thread-75] i.k.elasticvc.api.ComponentService : Saving batch of 3006 Relationships
2018-11-22 07:07:56.509 INFO 2123 --- [ool-5-thread-75] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:07:58.175 INFO 2123 --- [ool-5-thread-78] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:07:59.177 INFO 2123 --- [ool-5-thread-78] o.ihtsdo.otf.snomedboot.ReleaseImporter : 484195 reference set members read from der2_sRefset_SimpleMapFull_INT_20180731.txt
2018-11-22 07:07:59.665 INFO 2123 --- [ool-5-thread-73] o.ihtsdo.otf.snomedboot.ReleaseImporter : 665802 reference set members read from der2_cRefset_AttributeValueFull_INT_20180731.txt
2018-11-22 07:07:59.989 INFO 2123 --- [ool-5-thread-75] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:08:02.054 INFO 2123 --- [ool-5-thread-75] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:08:04.181 INFO 2123 --- [ool-5-thread-75] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:08:06.405 INFO 2123 --- [ool-5-thread-75] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:08:07.510 INFO 2123 --- [ool-5-thread-75] o.ihtsdo.otf.snomedboot.ReleaseImporter : 3207060 reference set members read from der2_cRefset_LanguageFull-en_INT_20180731.txt
2018-11-22 07:08:07.653 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 1960 ReferenceSetMembers
2018-11-22 07:08:08.135 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: started
2018-11-22 07:08:08.135 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: get branch criteria took 0.0 seconds
2018-11-22 07:08:08.139 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed is-a relationships. took 0.004 seconds
2018-11-22 07:08:08.140 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed axiom is-a fragments. took 0.001 seconds
2018-11-22 07:08:08.152 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : Performing incremental update of stated semantic index
2018-11-22 07:08:08.160 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect existingAncestors from QueryConcept. took 0.02 seconds
2018-11-22 07:08:08.162 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect existingDescendants from QueryConcept. took 0.002 seconds
2018-11-22 07:08:08.166 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Build existing nodes from Relationships. took 0.004 seconds
2018-11-22 07:08:08.168 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Build existing nodes from Axioms. took 0.002 seconds
2018-11-22 07:08:08.168 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : 0 existing nodes loaded.
2018-11-22 07:08:09.244 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Update graph using changed relationships. took 1.076 seconds
2018-11-22 07:08:09.247 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Update graph using changed axioms. took 0.003 seconds
2018-11-22 07:08:10.853 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect existingDescendants from QueryConcept. took 1.606 seconds
2018-11-22 07:08:10.853 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Save updated QueryConcepts took 0.0 seconds
2018-11-22 07:08:10.853 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: total took 2.718 seconds
2018-11-22 07:08:10.853 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: started
2018-11-22 07:08:10.853 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: get branch criteria took 0.0 seconds
2018-11-22 07:08:15.273 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect changed is-a relationships. took 4.42 seconds
2018-11-22 07:08:15.273 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : Performing incremental update of inferred semantic index
2018-11-22 07:08:18.529 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect existingAncestors from QueryConcept. took 3.256 seconds
2018-11-22 07:08:33.576 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect existingDescendants from QueryConcept. took 15.047 seconds
2018-11-22 07:08:39.782 WARN 2123 --- [/O dispatcher 1] org.elasticsearch.client.RestClient : request [GET http://localhost:9200/es-rel/relationship/_search?typed_keys=true&ignore_unavailable=false&expand_wildcards=open&allow_no_indices=true&scroll=60000ms&search_type=query_then_fetch&batched_reduce_size=512] returned 1 warnings: [299 Elasticsearch-6.5.1-8c58350 "Deprecated: the number of terms [145003] used in the Terms Query request has exceeded the allowed maximum of [65536]. This maximum can be set by changing the [index.max_terms_count] index level setting." "Thu, 22 Nov 2018 07:08:34 GMT"]
2018-11-22 07:09:19.879 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Build existing nodes from Relationships. took 46.303 seconds
2018-11-22 07:09:19.880 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : 144680 existing nodes loaded.
2018-11-22 07:09:34.282 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Update graph using changed relationships. took 14.403 seconds
2018-11-22 07:09:35.058 WARN 2123 --- [/O dispatcher 1] org.elasticsearch.client.RestClient : request [GET http://localhost:9200/es-concept/concept/_search?typed_keys=true&ignore_unavailable=false&expand_wildcards=open&allow_no_indices=true&search_type=dfs_query_then_fetch&batched_reduce_size=512] returned 1 warnings: [299 Elasticsearch-6.5.1-8c58350 "Deprecated: the number of terms [91436] used in the Terms Query request has exceeded the allowed maximum of [65536]. This maximum can be set by changing the [index.max_terms_count] index level setting." "Thu, 22 Nov 2018 07:09:34 GMT"]
2018-11-22 07:09:36.177 WARN 2123 --- [/O dispatcher 1] org.elasticsearch.client.RestClient : request [GET http://localhost:9200/es-concept/concept/_search?typed_keys=true&ignore_unavailable=false&expand_wildcards=open&allow_no_indices=true&scroll=60000ms&search_type=query_then_fetch&batched_reduce_size=512] returned 1 warnings: [299 Elasticsearch-6.5.1-8c58350 "Deprecated: the number of terms [91436] used in the Terms Query request has exceeded the allowed maximum of [65536]. This maximum can be set by changing the [index.max_terms_count] index level setting." "Thu, 22 Nov 2018 07:09:35 GMT"]
2018-11-22 07:09:44.662 WARN 2123 --- [/O dispatcher 1] org.elasticsearch.client.RestClient : request [GET http://localhost:9200/es-query/query-concept/_search?typed_keys=true&ignore_unavailable=false&expand_wildcards=open&allow_no_indices=true&scroll=60000ms&search_type=query_then_fetch&batched_reduce_size=512] returned 1 warnings: [299 Elasticsearch-6.5.1-8c58350 "Deprecated: the number of terms [175698] used in the Terms Query request has exceeded the allowed maximum of [65536]. This maximum can be set by changing the [index.max_terms_count] index level setting." "Thu, 22 Nov 2018 07:09:41 GMT"]
2018-11-22 07:10:28.206 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect existingDescendants from QueryConcept. took 53.924 seconds
2018-11-22 07:10:28.248 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:10:30.867 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:10:33.388 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:10:36.091 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:10:39.228 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:10:42.346 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:10:46.148 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:10:48.838 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:10:52.203 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:10:55.108 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:10:58.058 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:11:01.202 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:11:03.931 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:11:07.970 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:11:11.856 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:11:15.673 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:11:19.517 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:11:25.525 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5659 QueryConcepts
2018-11-22 07:11:28.319 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Save updated QueryConcepts took 60.113 seconds
2018-11-22 07:11:28.320 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: total took 197.467 seconds
2018-11-22 07:11:28.334 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Completed commit on MAIN at 1542870358390
2018-11-22 07:11:28.348 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Creating Code System version - Code System: SNOMEDCT, Version: 2005-01-31, Release Branch: MAIN/2005-01-31
2018-11-22 07:11:28.348 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Versioning content...
2018-11-22 07:11:28.362 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Open commit on MAIN at 1542870688362
2018-11-22 07:11:28.402 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: started
2018-11-22 07:11:28.403 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: get branch criteria took 0.001 seconds
2018-11-22 07:11:28.405 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed is-a relationships. took 0.002 seconds
2018-11-22 07:11:28.407 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed axiom is-a fragments. took 0.002 seconds
2018-11-22 07:11:28.413 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: started
2018-11-22 07:11:28.413 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: get branch criteria took 0.0 seconds
2018-11-22 07:11:28.416 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect changed is-a relationships. took 0.003 seconds
2018-11-22 07:11:28.434 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Completed commit on MAIN at 1542870688362
2018-11-22 07:11:28.434 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Creating version branch content...
2018-11-22 07:11:28.441 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Creating branch Branch{path=MAIN/2005-01-31, base=1542870688362, head=1542870688434, start=1542870688434, end=null}
2018-11-22 07:11:28.448 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Persisting Code System Version...
2018-11-22 07:11:28.461 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Versioning complete.
2018-11-22 07:11:28.484 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Open commit on MAIN at 1542870688484
2018-11-22 07:11:28.484 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Loading release delta 20050731
2018-11-22 07:11:28.484 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading concepts for release 20050731
2018-11-22 07:11:29.053 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Concepts
2018-11-22 07:11:29.677 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : 581635 concepts read from sct2_Concept_Full_INT_20180731.txt
2018-11-22 07:11:29.677 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : includedReferenceSetPathPatterns: []
2018-11-22 07:11:29.677 INFO 2123 --- [ool-5-thread-79] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading relationships for release 20050731
2018-11-22 07:11:29.678 INFO 2123 --- [ool-5-thread-80] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading relationships for release 20050731
2018-11-22 07:11:29.678 INFO 2123 --- [ool-5-thread-81] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading descriptions for release 20050731
2018-11-22 07:11:29.679 INFO 2123 --- [ool-5-thread-82] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading descriptions for release 20050731
2018-11-22 07:11:29.715 INFO 2123 --- [ool-5-thread-82] o.ihtsdo.otf.snomedboot.ReleaseImporter : 5151 descriptions read from sct2_TextDefinition_Full-en_INT_20180731.txt
2018-11-22 07:11:30.962 INFO 2123 --- [ool-5-thread-79] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:11:33.088 INFO 2123 --- [ool-5-thread-80] o.ihtsdo.otf.snomedboot.ReleaseImporter : 1130957 relationships read from sct2_StatedRelationship_Full_INT_20180731.txt
2018-11-22 07:11:33.936 INFO 2123 --- [ool-5-thread-79] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:11:34.945 INFO 2123 --- [ool-5-thread-81] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 07:11:37.154 INFO 2123 --- [ool-5-thread-79] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:11:38.495 INFO 2123 --- [ool-5-thread-81] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 07:11:41.539 INFO 2123 --- [ool-5-thread-81] o.ihtsdo.otf.snomedboot.ReleaseImporter : 2513952 descriptions read from sct2_Description_Full-en_INT_20180731.txt
2018-11-22 07:11:42.563 INFO 2123 --- [ool-5-thread-79] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:11:44.064 INFO 2123 --- [ool-5-thread-79] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:11:45.883 INFO 2123 --- [ool-5-thread-79] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:11:47.801 INFO 2123 --- [ool-5-thread-79] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:11:49.552 INFO 2123 --- [ool-5-thread-79] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:11:51.139 INFO 2123 --- [ool-5-thread-79] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:11:52.731 INFO 2123 --- [ool-5-thread-79] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:11:54.159 INFO 2123 --- [ool-5-thread-79] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:11:55.904 INFO 2123 --- [ool-5-thread-79] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:11:57.678 INFO 2123 --- [ool-5-thread-79] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:11:59.337 INFO 2123 --- [ool-5-thread-79] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:12:01.183 INFO 2123 --- [ool-5-thread-79] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:12:02.490 INFO 2123 --- [ool-5-thread-79] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:12:03.969 INFO 2123 --- [ool-5-thread-79] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:12:05.232 INFO 2123 --- [ool-5-thread-79] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:12:06.464 INFO 2123 --- [ool-5-thread-79] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:12:07.608 INFO 2123 --- [ool-5-thread-79] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:12:09.709 INFO 2123 --- [ool-5-thread-79] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:12:10.642 INFO 2123 --- [ool-5-thread-79] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:12:11.305 INFO 2123 --- [ool-5-thread-79] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:12:12.613 INFO 2123 --- [ool-5-thread-79] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:12:14.064 INFO 2123 --- [ool-5-thread-79] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:12:14.592 INFO 2123 --- [ool-5-thread-79] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:12:15.371 INFO 2123 --- [ool-5-thread-79] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:12:16.760 INFO 2123 --- [ool-5-thread-79] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:12:17.472 INFO 2123 --- [ool-5-thread-79] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:12:18.163 INFO 2123 --- [ool-5-thread-79] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:12:19.651 INFO 2123 --- [ool-5-thread-79] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:12:21.848 INFO 2123 --- [ool-5-thread-79] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:12:23.949 INFO 2123 --- [ool-5-thread-79] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:12:27.207 INFO 2123 --- [ool-5-thread-79] o.ihtsdo.otf.snomedboot.ReleaseImporter : 5112181 relationships read from sct2_Relationship_Full_INT_20180731.txt
2018-11-22 07:12:27.208 INFO 2123 --- [ool-5-thread-79] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20050731
2018-11-22 07:12:27.208 INFO 2123 --- [ool-5-thread-81] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20050731
2018-11-22 07:12:27.208 INFO 2123 --- [ool-5-thread-80] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20050731
2018-11-22 07:12:27.208 INFO 2123 --- [ool-5-thread-81] o.ihtsdo.otf.snomedboot.ReleaseImporter : 11 reference set members read from sct2_sRefset_OWLAxiomFull_INT_20180731.txt
2018-11-22 07:12:27.208 INFO 2123 --- [ool-5-thread-81] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20050731
2018-11-22 07:12:27.208 INFO 2123 --- [ool-5-thread-81] o.ihtsdo.otf.snomedboot.ReleaseImporter : 4 reference set members read from der2_ciRefset_DescriptionTypeFull_INT_20180731.txt
2018-11-22 07:12:27.208 INFO 2123 --- [ool-5-thread-80] o.ihtsdo.otf.snomedboot.ReleaseImporter : 167 reference set members read from der2_cciRefset_RefsetDescriptorFull_INT_20180731.txt
2018-11-22 07:12:27.208 INFO 2123 --- [ool-5-thread-82] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20050731
2018-11-22 07:12:27.208 INFO 2123 --- [ool-5-thread-82] o.ihtsdo.otf.snomedboot.ReleaseImporter : 7 reference set members read from sct2_sRefset_OWLOntologyFull_INT_20180731.txt
2018-11-22 07:12:27.208 INFO 2123 --- [ool-5-thread-82] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20050731
2018-11-22 07:12:27.208 INFO 2123 --- [ool-5-thread-79] o.ihtsdo.otf.snomedboot.ReleaseImporter : 144 reference set members read from der2_ssccRefset_MRCMAttributeRangeFull_INT_20180731.txt
2018-11-22 07:12:27.209 INFO 2123 --- [ool-5-thread-81] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20050731
2018-11-22 07:12:27.210 INFO 2123 --- [ool-5-thread-80] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20050731
2018-11-22 07:12:27.210 INFO 2123 --- [ool-5-thread-83] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20050731
2018-11-22 07:12:27.212 INFO 2123 --- [ool-5-thread-80] o.ihtsdo.otf.snomedboot.ReleaseImporter : 36 reference set members read from der2_sssssssRefset_MRCMDomainFull_INT_20180731.txt
2018-11-22 07:12:27.213 INFO 2123 --- [ool-5-thread-84] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20050731
2018-11-22 07:12:27.213 INFO 2123 --- [ool-5-thread-84] o.ihtsdo.otf.snomedboot.ReleaseImporter : 3 reference set members read from der2_cRefset_MRCMModuleScopeFull_INT_20180731.txt
2018-11-22 07:12:27.213 INFO 2123 --- [ool-5-thread-79] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20050731
2018-11-22 07:12:27.213 INFO 2123 --- [ool-5-thread-79] o.ihtsdo.otf.snomedboot.ReleaseImporter : 56 reference set members read from der2_ssRefset_ModuleDependencyFull_INT_20180731.txt
2018-11-22 07:12:27.213 INFO 2123 --- [ool-5-thread-84] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20050731
2018-11-22 07:12:27.222 INFO 2123 --- [ool-5-thread-80] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20050731
2018-11-22 07:12:27.222 INFO 2123 --- [ool-5-thread-85] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20050731
2018-11-22 07:12:27.223 INFO 2123 --- [ool-5-thread-85] o.ihtsdo.otf.snomedboot.ReleaseImporter : 154 reference set members read from der2_cissccRefset_MRCMAttributeDomainFull_INT_20180731.txt
2018-11-22 07:12:27.223 INFO 2123 --- [ool-5-thread-86] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20050731
2018-11-22 07:12:27.254 INFO 2123 --- [ool-5-thread-83] o.ihtsdo.otf.snomedboot.ReleaseImporter : 19870 reference set members read from der2_Refset_SimpleFull_INT_20180731.txt
2018-11-22 07:12:27.810 INFO 2123 --- [ool-5-thread-81] o.ihtsdo.otf.snomedboot.ReleaseImporter : 167899 reference set members read from der2_cRefset_AssociationFull_INT_20180731.txt
2018-11-22 07:12:28.127 INFO 2123 --- [ool-5-thread-82] i.k.elasticvc.api.ComponentService : Saving batch of 14 Concepts
2018-11-22 07:12:28.236 INFO 2123 --- [ool-5-thread-82] i.k.elasticvc.api.ComponentService : Saving batch of 2592 Descriptions
2018-11-22 07:12:28.369 INFO 2123 --- [ool-5-thread-80] o.ihtsdo.otf.snomedboot.ReleaseImporter : 224459 reference set members read from der2_iisssccRefset_ExtendedMapFull_INT_20180731.txt
2018-11-22 07:12:28.583 INFO 2123 --- [ool-5-thread-82] i.k.elasticvc.api.ComponentService : Saving batch of 1553 Relationships
2018-11-22 07:12:30.875 INFO 2123 --- [ool-5-thread-82] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:12:34.383 INFO 2123 --- [ool-5-thread-86] o.ihtsdo.otf.snomedboot.ReleaseImporter : 484195 reference set members read from der2_sRefset_SimpleMapFull_INT_20180731.txt
2018-11-22 07:12:35.859 INFO 2123 --- [ool-5-thread-82] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:12:38.157 INFO 2123 --- [ool-5-thread-84] o.ihtsdo.otf.snomedboot.ReleaseImporter : 665802 reference set members read from der2_cRefset_AttributeValueFull_INT_20180731.txt
2018-11-22 07:12:39.280 INFO 2123 --- [ool-5-thread-82] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:12:43.785 INFO 2123 --- [ool-5-thread-82] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:12:45.749 INFO 2123 --- [ool-5-thread-82] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:12:47.437 INFO 2123 --- [ool-5-thread-82] o.ihtsdo.otf.snomedboot.ReleaseImporter : 3207060 reference set members read from der2_cRefset_LanguageFull-en_INT_20180731.txt
2018-11-22 07:12:47.708 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 4286 ReferenceSetMembers
2018-11-22 07:12:48.524 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: started
2018-11-22 07:12:48.524 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: get branch criteria took 0.0 seconds
2018-11-22 07:12:48.527 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed is-a relationships. took 0.003 seconds
2018-11-22 07:12:48.529 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed axiom is-a fragments. took 0.002 seconds
2018-11-22 07:12:48.532 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : Performing incremental update of stated semantic index
2018-11-22 07:12:48.536 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect existingAncestors from QueryConcept. took 0.007 seconds
2018-11-22 07:12:48.538 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect existingDescendants from QueryConcept. took 0.002 seconds
2018-11-22 07:12:48.541 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Build existing nodes from Relationships. took 0.003 seconds
2018-11-22 07:12:48.543 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Build existing nodes from Axioms. took 0.002 seconds
2018-11-22 07:12:48.543 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : 0 existing nodes loaded.
2018-11-22 07:12:48.554 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Update graph using changed relationships. took 0.011 seconds
2018-11-22 07:12:48.556 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Update graph using changed axioms. took 0.002 seconds
2018-11-22 07:12:48.582 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect existingDescendants from QueryConcept. took 0.026 seconds
2018-11-22 07:12:48.582 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Save updated QueryConcepts took 0.0 seconds
2018-11-22 07:12:48.582 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: total took 0.058 seconds
2018-11-22 07:12:48.582 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: started
2018-11-22 07:12:48.582 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: get branch criteria took 0.0 seconds
2018-11-22 07:12:49.070 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect changed is-a relationships. took 0.488 seconds
2018-11-22 07:12:49.070 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : Performing incremental update of inferred semantic index
2018-11-22 07:12:49.877 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect existingAncestors from QueryConcept. took 0.807 seconds
2018-11-22 07:12:54.509 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect existingDescendants from QueryConcept. took 4.632 seconds
2018-11-22 07:12:56.339 WARN 2123 --- [/O dispatcher 1] org.elasticsearch.client.RestClient : request [GET http://localhost:9200/es-rel/relationship/_search?typed_keys=true&ignore_unavailable=false&expand_wildcards=open&allow_no_indices=true&scroll=60000ms&search_type=query_then_fetch&batched_reduce_size=512] returned 1 warnings: [299 Elasticsearch-6.5.1-8c58350 "Deprecated: the number of terms [92701] used in the Terms Query request has exceeded the allowed maximum of [65536]. This maximum can be set by changing the [index.max_terms_count] index level setting." "Thu, 22 Nov 2018 07:12:54 GMT"]
2018-11-22 07:13:15.972 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Build existing nodes from Relationships. took 21.463 seconds
2018-11-22 07:13:15.972 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : 94419 existing nodes loaded.
2018-11-22 07:13:29.015 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Update graph using changed relationships. took 13.043 seconds
2018-11-22 07:13:38.330 WARN 2123 --- [/O dispatcher 1] org.elasticsearch.client.RestClient : request [GET http://localhost:9200/es-query/query-concept/_search?typed_keys=true&ignore_unavailable=false&expand_wildcards=open&allow_no_indices=true&scroll=60000ms&search_type=query_then_fetch&batched_reduce_size=512] returned 1 warnings: [299 Elasticsearch-6.5.1-8c58350 "Deprecated: the number of terms [98912] used in the Terms Query request has exceeded the allowed maximum of [65536]. This maximum can be set by changing the [index.max_terms_count] index level setting." "Thu, 22 Nov 2018 07:13:35 GMT"]
2018-11-22 07:13:55.838 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect existingDescendants from QueryConcept. took 26.823 seconds
2018-11-22 07:13:55.868 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:14:00.823 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:14:07.346 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:14:12.968 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:14:20.869 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:14:32.251 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:14:41.223 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:14:45.055 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:14:47.852 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:14:50.783 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 8815 QueryConcepts
2018-11-22 07:14:53.560 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Save updated QueryConcepts took 57.722 seconds
2018-11-22 07:14:53.560 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: total took 124.978 seconds
2018-11-22 07:14:53.573 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Completed commit on MAIN at 1542870688484
2018-11-22 07:14:53.578 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Creating Code System version - Code System: SNOMEDCT, Version: 2005-07-31, Release Branch: MAIN/2005-07-31
2018-11-22 07:14:53.578 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Versioning content...
2018-11-22 07:14:53.594 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Open commit on MAIN at 1542870893594
2018-11-22 07:14:53.623 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: started
2018-11-22 07:14:53.623 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: get branch criteria took 0.0 seconds
2018-11-22 07:14:53.625 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed is-a relationships. took 0.002 seconds
2018-11-22 07:14:53.626 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed axiom is-a fragments. took 0.001 seconds
2018-11-22 07:14:53.630 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: started
2018-11-22 07:14:53.631 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: get branch criteria took 0.001 seconds
2018-11-22 07:14:53.633 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect changed is-a relationships. took 0.002 seconds
2018-11-22 07:14:53.644 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Completed commit on MAIN at 1542870893594
2018-11-22 07:14:53.644 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Creating version branch content...
2018-11-22 07:14:53.650 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Creating branch Branch{path=MAIN/2005-07-31, base=1542870893594, head=1542870893644, start=1542870893644, end=null}
2018-11-22 07:14:53.659 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Persisting Code System Version...
2018-11-22 07:14:53.667 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Versioning complete.
2018-11-22 07:14:53.675 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Open commit on MAIN at 1542870893675
2018-11-22 07:14:53.675 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Loading release delta 20060131
2018-11-22 07:14:53.675 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading concepts for release 20060131
2018-11-22 07:14:54.172 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Concepts
2018-11-22 07:14:55.134 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : 581635 concepts read from sct2_Concept_Full_INT_20180731.txt
2018-11-22 07:14:55.134 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : includedReferenceSetPathPatterns: []
2018-11-22 07:14:55.134 INFO 2123 --- [ool-5-thread-87] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading relationships for release 20060131
2018-11-22 07:14:55.134 INFO 2123 --- [ool-5-thread-88] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading relationships for release 20060131
2018-11-22 07:14:55.134 INFO 2123 --- [ool-5-thread-89] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading descriptions for release 20060131
2018-11-22 07:14:55.134 INFO 2123 --- [ool-5-thread-90] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading descriptions for release 20060131
2018-11-22 07:14:55.170 INFO 2123 --- [ool-5-thread-90] o.ihtsdo.otf.snomedboot.ReleaseImporter : 5151 descriptions read from sct2_TextDefinition_Full-en_INT_20180731.txt
2018-11-22 07:14:57.467 INFO 2123 --- [ool-5-thread-87] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:14:57.933 INFO 2123 --- [ool-5-thread-88] o.ihtsdo.otf.snomedboot.ReleaseImporter : 1130957 relationships read from sct2_StatedRelationship_Full_INT_20180731.txt
2018-11-22 07:14:58.148 INFO 2123 --- [ool-5-thread-89] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 07:14:59.986 INFO 2123 --- [ool-5-thread-89] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 07:15:00.283 INFO 2123 --- [ool-5-thread-87] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:15:03.276 INFO 2123 --- [ool-5-thread-87] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:15:03.645 INFO 2123 --- [ool-5-thread-89] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 07:15:05.707 INFO 2123 --- [ool-5-thread-89] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 07:15:06.352 INFO 2123 --- [ool-5-thread-87] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:15:07.034 INFO 2123 --- [ool-5-thread-89] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 07:15:08.295 INFO 2123 --- [ool-5-thread-89] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 07:15:09.351 INFO 2123 --- [ool-5-thread-89] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 07:15:09.641 INFO 2123 --- [ool-5-thread-87] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:15:11.468 INFO 2123 --- [ool-5-thread-87] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:15:11.796 INFO 2123 --- [ool-5-thread-89] o.ihtsdo.otf.snomedboot.ReleaseImporter : 2513952 descriptions read from sct2_Description_Full-en_INT_20180731.txt
2018-11-22 07:15:13.255 INFO 2123 --- [ool-5-thread-87] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:15:14.789 INFO 2123 --- [ool-5-thread-87] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:15:16.064 INFO 2123 --- [ool-5-thread-87] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:15:17.423 INFO 2123 --- [ool-5-thread-87] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:15:19.023 INFO 2123 --- [ool-5-thread-87] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:15:20.408 INFO 2123 --- [ool-5-thread-87] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:15:21.696 INFO 2123 --- [ool-5-thread-87] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:15:22.980 INFO 2123 --- [ool-5-thread-87] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:15:24.135 INFO 2123 --- [ool-5-thread-87] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:15:25.583 INFO 2123 --- [ool-5-thread-87] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:15:26.890 INFO 2123 --- [ool-5-thread-87] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:15:28.852 INFO 2123 --- [ool-5-thread-87] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:15:30.827 INFO 2123 --- [ool-5-thread-87] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:15:32.696 INFO 2123 --- [ool-5-thread-87] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:15:34.456 INFO 2123 --- [ool-5-thread-87] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:15:35.097 INFO 2123 --- [ool-5-thread-87] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:15:35.798 INFO 2123 --- [ool-5-thread-87] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:15:37.258 INFO 2123 --- [ool-5-thread-87] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:15:37.876 INFO 2123 --- [ool-5-thread-87] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:15:38.496 INFO 2123 --- [ool-5-thread-87] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:15:39.881 INFO 2123 --- [ool-5-thread-87] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:15:41.293 INFO 2123 --- [ool-5-thread-87] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:15:41.969 INFO 2123 --- [ool-5-thread-87] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:15:42.560 INFO 2123 --- [ool-5-thread-87] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:15:43.303 INFO 2123 --- [ool-5-thread-87] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:15:43.847 INFO 2123 --- [ool-5-thread-87] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:15:44.421 INFO 2123 --- [ool-5-thread-87] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:15:45.033 INFO 2123 --- [ool-5-thread-87] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:15:45.635 INFO 2123 --- [ool-5-thread-87] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:15:46.894 INFO 2123 --- [ool-5-thread-87] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:15:50.221 INFO 2123 --- [ool-5-thread-87] o.ihtsdo.otf.snomedboot.ReleaseImporter : 5112181 relationships read from sct2_Relationship_Full_INT_20180731.txt
2018-11-22 07:15:50.221 INFO 2123 --- [ool-5-thread-87] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20060131
2018-11-22 07:15:50.221 INFO 2123 --- [ool-5-thread-89] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20060131
2018-11-22 07:15:50.221 INFO 2123 --- [ool-5-thread-88] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20060131
2018-11-22 07:15:50.221 INFO 2123 --- [ool-5-thread-89] o.ihtsdo.otf.snomedboot.ReleaseImporter : 11 reference set members read from sct2_sRefset_OWLAxiomFull_INT_20180731.txt
2018-11-22 07:15:50.221 INFO 2123 --- [ool-5-thread-89] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20060131
2018-11-22 07:15:50.222 INFO 2123 --- [ool-5-thread-89] o.ihtsdo.otf.snomedboot.ReleaseImporter : 4 reference set members read from der2_ciRefset_DescriptionTypeFull_INT_20180731.txt
2018-11-22 07:15:50.222 INFO 2123 --- [ool-5-thread-91] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20060131
2018-11-22 07:15:50.222 INFO 2123 --- [ool-5-thread-89] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20060131
2018-11-22 07:15:50.222 INFO 2123 --- [ool-5-thread-88] o.ihtsdo.otf.snomedboot.ReleaseImporter : 167 reference set members read from der2_cciRefset_RefsetDescriptorFull_INT_20180731.txt
2018-11-22 07:15:50.222 INFO 2123 --- [ool-5-thread-90] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20060131
2018-11-22 07:15:50.222 INFO 2123 --- [ool-5-thread-90] o.ihtsdo.otf.snomedboot.ReleaseImporter : 7 reference set members read from sct2_sRefset_OWLOntologyFull_INT_20180731.txt
2018-11-22 07:15:50.222 INFO 2123 --- [ool-5-thread-87] o.ihtsdo.otf.snomedboot.ReleaseImporter : 144 reference set members read from der2_ssccRefset_MRCMAttributeRangeFull_INT_20180731.txt
2018-11-22 07:15:50.224 INFO 2123 --- [ool-5-thread-92] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20060131
2018-11-22 07:15:50.224 INFO 2123 --- [ool-5-thread-92] o.ihtsdo.otf.snomedboot.ReleaseImporter : 3 reference set members read from der2_cRefset_MRCMModuleScopeFull_INT_20180731.txt
2018-11-22 07:15:50.224 INFO 2123 --- [ool-5-thread-93] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20060131
2018-11-22 07:15:50.224 INFO 2123 --- [ool-5-thread-92] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20060131
2018-11-22 07:15:50.224 INFO 2123 --- [ool-5-thread-90] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20060131
2018-11-22 07:15:50.224 INFO 2123 --- [ool-5-thread-88] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20060131
2018-11-22 07:15:50.234 INFO 2123 --- [ool-5-thread-87] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20060131
2018-11-22 07:15:50.234 INFO 2123 --- [ool-5-thread-94] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20060131
2018-11-22 07:15:50.235 INFO 2123 --- [ool-5-thread-94] o.ihtsdo.otf.snomedboot.ReleaseImporter : 56 reference set members read from der2_ssRefset_ModuleDependencyFull_INT_20180731.txt
2018-11-22 07:15:50.235 INFO 2123 --- [ool-5-thread-87] o.ihtsdo.otf.snomedboot.ReleaseImporter : 154 reference set members read from der2_cissccRefset_MRCMAttributeDomainFull_INT_20180731.txt
2018-11-22 07:15:50.250 INFO 2123 --- [ool-5-thread-95] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20060131
2018-11-22 07:15:50.252 INFO 2123 --- [ool-5-thread-93] o.ihtsdo.otf.snomedboot.ReleaseImporter : 36 reference set members read from der2_sssssssRefset_MRCMDomainFull_INT_20180731.txt
2018-11-22 07:15:50.265 INFO 2123 --- [ool-5-thread-91] o.ihtsdo.otf.snomedboot.ReleaseImporter : 19870 reference set members read from der2_Refset_SimpleFull_INT_20180731.txt
2018-11-22 07:15:50.529 INFO 2123 --- [ool-5-thread-90] i.k.elasticvc.api.ComponentService : Saving batch of 3389 Concepts
2018-11-22 07:15:51.106 INFO 2123 --- [ool-5-thread-90] i.k.elasticvc.api.ComponentService : Saving batch of 2679 Descriptions
2018-11-22 07:15:51.198 INFO 2123 --- [ool-5-thread-88] o.ihtsdo.otf.snomedboot.ReleaseImporter : 224459 reference set members read from der2_iisssccRefset_ExtendedMapFull_INT_20180731.txt
2018-11-22 07:15:51.448 INFO 2123 --- [ool-5-thread-90] i.k.elasticvc.api.ComponentService : Saving batch of 2897 Relationships
2018-11-22 07:15:52.127 INFO 2123 --- [ool-5-thread-90] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:15:53.713 INFO 2123 --- [ool-5-thread-89] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:15:54.721 INFO 2123 --- [ool-5-thread-92] o.ihtsdo.otf.snomedboot.ReleaseImporter : 167899 reference set members read from der2_cRefset_AssociationFull_INT_20180731.txt
2018-11-22 07:15:55.182 INFO 2123 --- [ool-5-thread-89] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:15:56.708 INFO 2123 --- [ool-5-thread-90] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:15:58.321 INFO 2123 --- [ool-5-thread-89] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:15:59.632 INFO 2123 --- [ool-5-thread-95] o.ihtsdo.otf.snomedboot.ReleaseImporter : 484195 reference set members read from der2_sRefset_SimpleMapFull_INT_20180731.txt
2018-11-22 07:16:00.071 INFO 2123 --- [ool-5-thread-90] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:16:01.667 INFO 2123 --- [ool-5-thread-90] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:16:02.633 INFO 2123 --- [ool-5-thread-90] o.ihtsdo.otf.snomedboot.ReleaseImporter : 665802 reference set members read from der2_cRefset_AttributeValueFull_INT_20180731.txt
2018-11-22 07:16:03.292 INFO 2123 --- [ool-5-thread-89] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:16:05.558 INFO 2123 --- [ool-5-thread-89] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:16:09.968 INFO 2123 --- [ool-5-thread-89] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:16:14.451 INFO 2123 --- [ool-5-thread-89] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:16:17.409 INFO 2123 --- [ool-5-thread-89] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:16:22.362 INFO 2123 --- [ool-5-thread-89] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:16:26.299 INFO 2123 --- [ool-5-thread-89] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:16:31.496 INFO 2123 --- [ool-5-thread-89] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:16:36.478 INFO 2123 --- [ool-5-thread-89] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:16:42.284 INFO 2123 --- [ool-5-thread-89] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:16:44.640 INFO 2123 --- [ool-5-thread-89] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:16:45.739 INFO 2123 --- [ool-5-thread-89] o.ihtsdo.otf.snomedboot.ReleaseImporter : 3207060 reference set members read from der2_cRefset_LanguageFull-en_INT_20180731.txt
2018-11-22 07:16:46.003 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 3695 ReferenceSetMembers
2018-11-22 07:16:46.713 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: started
2018-11-22 07:16:46.713 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: get branch criteria took 0.0 seconds
2018-11-22 07:16:46.716 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed is-a relationships. took 0.003 seconds
2018-11-22 07:16:46.718 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed axiom is-a fragments. took 0.002 seconds
2018-11-22 07:16:46.723 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : Performing incremental update of stated semantic index
2018-11-22 07:16:46.726 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect existingAncestors from QueryConcept. took 0.008 seconds
2018-11-22 07:16:46.728 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect existingDescendants from QueryConcept. took 0.002 seconds
2018-11-22 07:16:46.731 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Build existing nodes from Relationships. took 0.003 seconds
2018-11-22 07:16:46.733 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Build existing nodes from Axioms. took 0.002 seconds
2018-11-22 07:16:46.733 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : 0 existing nodes loaded.
2018-11-22 07:16:46.746 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Update graph using changed relationships. took 0.013 seconds
2018-11-22 07:16:46.748 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Update graph using changed axioms. took 0.002 seconds
2018-11-22 07:16:46.784 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect existingDescendants from QueryConcept. took 0.036 seconds
2018-11-22 07:16:46.785 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Save updated QueryConcepts took 0.001 seconds
2018-11-22 07:16:46.785 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: total took 0.072 seconds
2018-11-22 07:16:46.785 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: started
2018-11-22 07:16:46.785 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: get branch criteria took 0.0 seconds
2018-11-22 07:16:47.541 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect changed is-a relationships. took 0.756 seconds
2018-11-22 07:16:47.541 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : Performing incremental update of inferred semantic index
2018-11-22 07:16:48.669 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect existingAncestors from QueryConcept. took 1.128 seconds
2018-11-22 07:16:52.894 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect existingDescendants from QueryConcept. took 4.225 seconds
2018-11-22 07:16:54.864 WARN 2123 --- [/O dispatcher 3] org.elasticsearch.client.RestClient : request [GET http://localhost:9200/es-rel/relationship/_search?typed_keys=true&ignore_unavailable=false&expand_wildcards=open&allow_no_indices=true&scroll=60000ms&search_type=query_then_fetch&batched_reduce_size=512] returned 1 warnings: [299 Elasticsearch-6.5.1-8c58350 "Deprecated: the number of terms [103002] used in the Terms Query request has exceeded the allowed maximum of [65536]. This maximum can be set by changing the [index.max_terms_count] index level setting." "Thu, 22 Nov 2018 07:16:52 GMT"]
2018-11-22 07:17:25.716 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Build existing nodes from Relationships. took 32.822 seconds
2018-11-22 07:17:25.716 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : 103902 existing nodes loaded.
2018-11-22 07:17:41.423 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Update graph using changed relationships. took 15.707 seconds
2018-11-22 07:17:50.384 WARN 2123 --- [/O dispatcher 3] org.elasticsearch.client.RestClient : request [GET http://localhost:9200/es-query/query-concept/_search?typed_keys=true&ignore_unavailable=false&expand_wildcards=open&allow_no_indices=true&scroll=60000ms&search_type=query_then_fetch&batched_reduce_size=512] returned 1 warnings: [299 Elasticsearch-6.5.1-8c58350 "Deprecated: the number of terms [112764] used in the Terms Query request has exceeded the allowed maximum of [65536]. This maximum can be set by changing the [index.max_terms_count] index level setting." "Thu, 22 Nov 2018 07:17:48 GMT"]
2018-11-22 07:18:11.973 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect existingDescendants from QueryConcept. took 30.55 seconds
2018-11-22 07:18:12.007 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:18:14.989 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:18:18.256 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:18:22.058 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:18:26.441 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:18:32.541 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:18:39.524 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:18:45.211 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:18:47.999 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:18:50.918 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:18:53.489 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:18:56.290 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 2638 QueryConcepts
2018-11-22 07:18:57.583 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Save updated QueryConcepts took 45.61 seconds
2018-11-22 07:18:57.583 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: total took 130.798 seconds
2018-11-22 07:18:57.601 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Completed commit on MAIN at 1542870893675
2018-11-22 07:18:57.611 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Creating Code System version - Code System: SNOMEDCT, Version: 2006-01-31, Release Branch: MAIN/2006-01-31
2018-11-22 07:18:57.611 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Versioning content...
2018-11-22 07:18:57.622 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Open commit on MAIN at 1542871137622
2018-11-22 07:18:57.671 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: started
2018-11-22 07:18:57.671 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: get branch criteria took 0.0 seconds
2018-11-22 07:18:57.674 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed is-a relationships. took 0.003 seconds
2018-11-22 07:18:57.683 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed axiom is-a fragments. took 0.009 seconds
2018-11-22 07:18:57.686 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: started
2018-11-22 07:18:57.686 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: get branch criteria took 0.0 seconds
2018-11-22 07:18:57.689 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect changed is-a relationships. took 0.003 seconds
2018-11-22 07:18:57.707 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Completed commit on MAIN at 1542871137622
2018-11-22 07:18:57.707 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Creating version branch content...
2018-11-22 07:18:57.710 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Creating branch Branch{path=MAIN/2006-01-31, base=1542871137622, head=1542871137707, start=1542871137707, end=null}
2018-11-22 07:18:57.719 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Persisting Code System Version...
2018-11-22 07:18:57.728 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Versioning complete.
2018-11-22 07:18:57.739 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Open commit on MAIN at 1542871137739
2018-11-22 07:18:57.739 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Loading release delta 20060731
2018-11-22 07:18:57.739 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading concepts for release 20060731
2018-11-22 07:18:58.561 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : 581635 concepts read from sct2_Concept_Full_INT_20180731.txt
2018-11-22 07:18:58.561 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : includedReferenceSetPathPatterns: []
2018-11-22 07:18:58.561 INFO 2123 --- [ool-5-thread-96] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading relationships for release 20060731
2018-11-22 07:18:58.566 INFO 2123 --- [ool-5-thread-97] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading relationships for release 20060731
2018-11-22 07:18:58.566 INFO 2123 --- [ool-5-thread-98] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading descriptions for release 20060731
2018-11-22 07:18:58.575 INFO 2123 --- [ool-5-thread-99] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading descriptions for release 20060731
2018-11-22 07:18:58.647 INFO 2123 --- [ool-5-thread-99] o.ihtsdo.otf.snomedboot.ReleaseImporter : 5151 descriptions read from sct2_TextDefinition_Full-en_INT_20180731.txt
2018-11-22 07:19:01.960 INFO 2123 --- [ool-5-thread-98] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 07:19:02.483 INFO 2123 --- [ool-5-thread-97] o.ihtsdo.otf.snomedboot.ReleaseImporter : 1130957 relationships read from sct2_StatedRelationship_Full_INT_20180731.txt
2018-11-22 07:19:02.835 INFO 2123 --- [ool-5-thread-96] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:19:05.024 INFO 2123 --- [ool-5-thread-98] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 07:19:06.135 INFO 2123 --- [ool-5-thread-98] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 07:19:06.990 INFO 2123 --- [ool-5-thread-98] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 07:19:07.163 INFO 2123 --- [ool-5-thread-96] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:19:09.209 INFO 2123 --- [ool-5-thread-98] o.ihtsdo.otf.snomedboot.ReleaseImporter : 2513952 descriptions read from sct2_Description_Full-en_INT_20180731.txt
2018-11-22 07:19:10.033 INFO 2123 --- [ool-5-thread-96] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:19:11.666 INFO 2123 --- [ool-5-thread-96] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:19:13.160 INFO 2123 --- [ool-5-thread-96] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:19:14.486 INFO 2123 --- [ool-5-thread-96] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:19:15.776 INFO 2123 --- [ool-5-thread-96] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:19:16.993 INFO 2123 --- [ool-5-thread-96] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:19:18.277 INFO 2123 --- [ool-5-thread-96] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:19:20.258 INFO 2123 --- [ool-5-thread-96] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:19:22.094 INFO 2123 --- [ool-5-thread-96] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:19:23.730 INFO 2123 --- [ool-5-thread-96] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:19:24.450 INFO 2123 --- [ool-5-thread-96] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:19:25.789 INFO 2123 --- [ool-5-thread-96] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:19:26.466 INFO 2123 --- [ool-5-thread-96] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:19:28.594 INFO 2123 --- [ool-5-thread-96] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:19:29.462 INFO 2123 --- [ool-5-thread-96] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:19:30.745 INFO 2123 --- [ool-5-thread-96] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:19:31.377 INFO 2123 --- [ool-5-thread-96] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:19:34.475 INFO 2123 --- [ool-5-thread-96] o.ihtsdo.otf.snomedboot.ReleaseImporter : 5112181 relationships read from sct2_Relationship_Full_INT_20180731.txt
2018-11-22 07:19:34.475 INFO 2123 --- [ool-5-thread-96] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20060731
2018-11-22 07:19:34.475 INFO 2123 --- [ool-5-thread-97] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20060731
2018-11-22 07:19:34.475 INFO 2123 --- [ool-5-thread-98] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20060731
2018-11-22 07:19:34.475 INFO 2123 --- [ool-5-thread-98] o.ihtsdo.otf.snomedboot.ReleaseImporter : 11 reference set members read from sct2_sRefset_OWLAxiomFull_INT_20180731.txt
2018-11-22 07:19:34.476 INFO 2123 --- [ool-5-thread-97] o.ihtsdo.otf.snomedboot.ReleaseImporter : 167 reference set members read from der2_cciRefset_RefsetDescriptorFull_INT_20180731.txt
2018-11-22 07:19:34.476 INFO 2123 --- [ool-5-thread-99] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20060731
2018-11-22 07:19:34.476 INFO 2123 --- [ool-5-thread-99] o.ihtsdo.otf.snomedboot.ReleaseImporter : 7 reference set members read from sct2_sRefset_OWLOntologyFull_INT_20180731.txt
2018-11-22 07:19:34.476 INFO 2123 --- [ool-5-thread-96] o.ihtsdo.otf.snomedboot.ReleaseImporter : 144 reference set members read from der2_ssccRefset_MRCMAttributeRangeFull_INT_20180731.txt
2018-11-22 07:19:34.478 INFO 2123 --- [ool-5-thread-96] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20060731
2018-11-22 07:19:34.478 INFO 2123 --- [ool-5-thread-98] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20060731
2018-11-22 07:19:34.478 INFO 2123 --- [ool-5-thread-99] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20060731
2018-11-22 07:19:34.478 INFO 2123 --- [ol-5-thread-100] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20060731
2018-11-22 07:19:34.478 INFO 2123 --- [ool-5-thread-96] o.ihtsdo.otf.snomedboot.ReleaseImporter : 4 reference set members read from der2_ciRefset_DescriptionTypeFull_INT_20180731.txt
2018-11-22 07:19:34.478 INFO 2123 --- [ool-5-thread-99] o.ihtsdo.otf.snomedboot.ReleaseImporter : 3 reference set members read from der2_cRefset_MRCMModuleScopeFull_INT_20180731.txt
2018-11-22 07:19:34.478 INFO 2123 --- [ool-5-thread-97] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20060731
2018-11-22 07:19:34.480 INFO 2123 --- [ool-5-thread-98] o.ihtsdo.otf.snomedboot.ReleaseImporter : 36 reference set members read from der2_sssssssRefset_MRCMDomainFull_INT_20180731.txt
2018-11-22 07:19:34.480 INFO 2123 --- [ool-5-thread-98] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20060731
2018-11-22 07:19:34.480 INFO 2123 --- [ool-5-thread-96] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20060731
2018-11-22 07:19:34.481 INFO 2123 --- [ool-5-thread-98] o.ihtsdo.otf.snomedboot.ReleaseImporter : 154 reference set members read from der2_cissccRefset_MRCMAttributeDomainFull_INT_20180731.txt
2018-11-22 07:19:34.482 INFO 2123 --- [ol-5-thread-101] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20060731
2018-11-22 07:19:34.484 INFO 2123 --- [ool-5-thread-99] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20060731
2018-11-22 07:19:34.518 INFO 2123 --- [ool-5-thread-98] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20060731
2018-11-22 07:19:34.519 INFO 2123 --- [ol-5-thread-100] o.ihtsdo.otf.snomedboot.ReleaseImporter : 19870 reference set members read from der2_Refset_SimpleFull_INT_20180731.txt
2018-11-22 07:19:34.519 INFO 2123 --- [ol-5-thread-102] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20060731
2018-11-22 07:19:34.519 INFO 2123 --- [ol-5-thread-102] o.ihtsdo.otf.snomedboot.ReleaseImporter : 56 reference set members read from der2_ssRefset_ModuleDependencyFull_INT_20180731.txt
2018-11-22 07:19:34.935 INFO 2123 --- [ol-5-thread-101] o.ihtsdo.otf.snomedboot.ReleaseImporter : 167899 reference set members read from der2_cRefset_AssociationFull_INT_20180731.txt
2018-11-22 07:19:34.997 INFO 2123 --- [ool-5-thread-98] i.k.elasticvc.api.ComponentService : Saving batch of 3530 Concepts
2018-11-22 07:19:35.441 INFO 2123 --- [ool-5-thread-96] o.ihtsdo.otf.snomedboot.ReleaseImporter : 224459 reference set members read from der2_iisssccRefset_ExtendedMapFull_INT_20180731.txt
2018-11-22 07:19:35.846 INFO 2123 --- [ool-5-thread-98] i.k.elasticvc.api.ComponentService : Saving batch of 4716 Descriptions
2018-11-22 07:19:36.413 INFO 2123 --- [ool-5-thread-98] i.k.elasticvc.api.ComponentService : Saving batch of 4048 Relationships
2018-11-22 07:19:37.164 INFO 2123 --- [ool-5-thread-98] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:19:42.527 INFO 2123 --- [ool-5-thread-99] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:19:43.761 INFO 2123 --- [ool-5-thread-98] o.ihtsdo.otf.snomedboot.ReleaseImporter : 484195 reference set members read from der2_sRefset_SimpleMapFull_INT_20180731.txt
2018-11-22 07:19:44.324 INFO 2123 --- [ool-5-thread-99] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:19:45.870 INFO 2123 --- [ool-5-thread-99] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:19:46.884 INFO 2123 --- [ool-5-thread-99] o.ihtsdo.otf.snomedboot.ReleaseImporter : 665802 reference set members read from der2_cRefset_AttributeValueFull_INT_20180731.txt
2018-11-22 07:19:47.644 INFO 2123 --- [ool-5-thread-97] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:19:49.408 INFO 2123 --- [ool-5-thread-97] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:19:51.911 INFO 2123 --- [ool-5-thread-97] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:19:53.651 INFO 2123 --- [ool-5-thread-97] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:19:55.352 INFO 2123 --- [ool-5-thread-97] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:19:56.983 INFO 2123 --- [ool-5-thread-97] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:19:58.875 INFO 2123 --- [ool-5-thread-97] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:20:00.088 INFO 2123 --- [ool-5-thread-97] o.ihtsdo.otf.snomedboot.ReleaseImporter : 3207060 reference set members read from der2_cRefset_LanguageFull-en_INT_20180731.txt
2018-11-22 07:20:00.452 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 4500 ReferenceSetMembers
2018-11-22 07:20:01.283 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: started
2018-11-22 07:20:01.283 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: get branch criteria took 0.0 seconds
2018-11-22 07:20:01.285 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed is-a relationships. took 0.002 seconds
2018-11-22 07:20:01.286 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed axiom is-a fragments. took 0.001 seconds
2018-11-22 07:20:01.288 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : Performing incremental update of stated semantic index
2018-11-22 07:20:01.291 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect existingAncestors from QueryConcept. took 0.005 seconds
2018-11-22 07:20:01.292 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect existingDescendants from QueryConcept. took 0.001 seconds
2018-11-22 07:20:01.296 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Build existing nodes from Relationships. took 0.004 seconds
2018-11-22 07:20:01.298 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Build existing nodes from Axioms. took 0.002 seconds
2018-11-22 07:20:01.298 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : 0 existing nodes loaded.
2018-11-22 07:20:01.323 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Update graph using changed relationships. took 0.025 seconds
2018-11-22 07:20:01.325 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Update graph using changed axioms. took 0.002 seconds
2018-11-22 07:20:01.353 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect existingDescendants from QueryConcept. took 0.028 seconds
2018-11-22 07:20:01.353 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Save updated QueryConcepts took 0.0 seconds
2018-11-22 07:20:01.353 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: total took 0.07 seconds
2018-11-22 07:20:01.353 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: started
2018-11-22 07:20:01.353 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: get branch criteria took 0.0 seconds
2018-11-22 07:20:01.612 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect changed is-a relationships. took 0.259 seconds
2018-11-22 07:20:01.612 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : Performing incremental update of inferred semantic index
2018-11-22 07:20:02.182 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect existingAncestors from QueryConcept. took 0.57 seconds
2018-11-22 07:20:07.852 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect existingDescendants from QueryConcept. took 5.67 seconds
2018-11-22 07:20:11.543 WARN 2123 --- [/O dispatcher 1] org.elasticsearch.client.RestClient : request [GET http://localhost:9200/es-rel/relationship/_search?typed_keys=true&ignore_unavailable=false&expand_wildcards=open&allow_no_indices=true&scroll=60000ms&search_type=query_then_fetch&batched_reduce_size=512] returned 1 warnings: [299 Elasticsearch-6.5.1-8c58350 "Deprecated: the number of terms [75174] used in the Terms Query request has exceeded the allowed maximum of [65536]. This maximum can be set by changing the [index.max_terms_count] index level setting." "Thu, 22 Nov 2018 07:20:07 GMT"]
2018-11-22 07:20:43.627 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Build existing nodes from Relationships. took 35.775 seconds
2018-11-22 07:20:43.627 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : 76202 existing nodes loaded.
2018-11-22 07:20:47.703 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Update graph using changed relationships. took 4.076 seconds
2018-11-22 07:20:51.232 WARN 2123 --- [/O dispatcher 1] org.elasticsearch.client.RestClient : request [GET http://localhost:9200/es-query/query-concept/_search?typed_keys=true&ignore_unavailable=false&expand_wildcards=open&allow_no_indices=true&scroll=60000ms&search_type=query_then_fetch&batched_reduce_size=512] returned 1 warnings: [299 Elasticsearch-6.5.1-8c58350 "Deprecated: the number of terms [80056] used in the Terms Query request has exceeded the allowed maximum of [65536]. This maximum can be set by changing the [index.max_terms_count] index level setting." "Thu, 22 Nov 2018 07:20:49 GMT"]
2018-11-22 07:21:04.328 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect existingDescendants from QueryConcept. took 16.625 seconds
2018-11-22 07:21:04.354 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:21:13.183 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:21:23.277 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:21:34.169 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:21:45.087 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:21:47.917 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:21:51.216 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:21:54.194 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 9895 QueryConcepts
2018-11-22 07:21:56.950 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Save updated QueryConcepts took 52.622 seconds
2018-11-22 07:21:56.950 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: total took 115.597 seconds
2018-11-22 07:21:56.962 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Completed commit on MAIN at 1542871137739
2018-11-22 07:21:56.968 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Creating Code System version - Code System: SNOMEDCT, Version: 2006-07-31, Release Branch: MAIN/2006-07-31
2018-11-22 07:21:56.968 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Versioning content...
2018-11-22 07:21:56.978 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Open commit on MAIN at 1542871316978
2018-11-22 07:21:57.022 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: started
2018-11-22 07:21:57.022 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: get branch criteria took 0.0 seconds
2018-11-22 07:21:57.025 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed is-a relationships. took 0.003 seconds
2018-11-22 07:21:57.026 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed axiom is-a fragments. took 0.001 seconds
2018-11-22 07:21:57.029 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: started
2018-11-22 07:21:57.029 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: get branch criteria took 0.0 seconds
2018-11-22 07:21:57.032 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect changed is-a relationships. took 0.003 seconds
2018-11-22 07:21:57.045 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Completed commit on MAIN at 1542871316978
2018-11-22 07:21:57.045 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Creating version branch content...
2018-11-22 07:21:57.050 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Creating branch Branch{path=MAIN/2006-07-31, base=1542871316978, head=1542871317045, start=1542871317045, end=null}
2018-11-22 07:21:57.058 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Persisting Code System Version...
2018-11-22 07:21:57.073 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Versioning complete.
2018-11-22 07:21:57.084 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Open commit on MAIN at 1542871317084
2018-11-22 07:21:57.084 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Loading release delta 20070131
2018-11-22 07:21:57.084 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading concepts for release 20070131
2018-11-22 07:21:57.739 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Concepts
2018-11-22 07:21:58.611 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : 581635 concepts read from sct2_Concept_Full_INT_20180731.txt
2018-11-22 07:21:58.611 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : includedReferenceSetPathPatterns: []
2018-11-22 07:21:58.611 INFO 2123 --- [ol-5-thread-103] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading relationships for release 20070131
2018-11-22 07:21:58.614 INFO 2123 --- [ol-5-thread-105] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading descriptions for release 20070131
2018-11-22 07:21:58.614 INFO 2123 --- [ol-5-thread-104] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading relationships for release 20070131
2018-11-22 07:21:58.626 INFO 2123 --- [ol-5-thread-106] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading descriptions for release 20070131
2018-11-22 07:21:58.669 INFO 2123 --- [ol-5-thread-106] o.ihtsdo.otf.snomedboot.ReleaseImporter : 5151 descriptions read from sct2_TextDefinition_Full-en_INT_20180731.txt
2018-11-22 07:21:59.567 INFO 2123 --- [ol-5-thread-103] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:22:02.700 INFO 2123 --- [ol-5-thread-104] o.ihtsdo.otf.snomedboot.ReleaseImporter : 1130957 relationships read from sct2_StatedRelationship_Full_INT_20180731.txt
2018-11-22 07:22:02.790 INFO 2123 --- [ol-5-thread-103] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:22:05.022 INFO 2123 --- [ol-5-thread-103] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:22:05.291 INFO 2123 --- [ol-5-thread-105] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 07:22:07.044 INFO 2123 --- [ol-5-thread-105] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 07:22:07.684 INFO 2123 --- [ol-5-thread-103] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:22:09.290 INFO 2123 --- [ol-5-thread-105] o.ihtsdo.otf.snomedboot.ReleaseImporter : 2513952 descriptions read from sct2_Description_Full-en_INT_20180731.txt
2018-11-22 07:22:09.370 INFO 2123 --- [ol-5-thread-103] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:22:10.806 INFO 2123 --- [ol-5-thread-103] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:22:12.602 INFO 2123 --- [ol-5-thread-103] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:22:14.350 INFO 2123 --- [ol-5-thread-103] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:22:16.009 INFO 2123 --- [ol-5-thread-103] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:22:17.413 INFO 2123 --- [ol-5-thread-103] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:22:18.868 INFO 2123 --- [ol-5-thread-103] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:22:20.317 INFO 2123 --- [ol-5-thread-103] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:22:22.824 INFO 2123 --- [ol-5-thread-103] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:22:24.978 INFO 2123 --- [ol-5-thread-103] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:22:27.858 INFO 2123 --- [ol-5-thread-103] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:22:31.289 INFO 2123 --- [ol-5-thread-103] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:22:34.918 INFO 2123 --- [ol-5-thread-103] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:22:38.429 INFO 2123 --- [ol-5-thread-103] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:22:43.151 INFO 2123 --- [ol-5-thread-103] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:22:46.265 INFO 2123 --- [ol-5-thread-103] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:22:47.716 INFO 2123 --- [ol-5-thread-103] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:22:48.987 INFO 2123 --- [ol-5-thread-103] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:22:50.238 INFO 2123 --- [ol-5-thread-103] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:22:51.472 INFO 2123 --- [ol-5-thread-103] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:22:53.157 INFO 2123 --- [ol-5-thread-103] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:22:54.529 INFO 2123 --- [ol-5-thread-103] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:22:56.129 INFO 2123 --- [ol-5-thread-103] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:22:57.732 INFO 2123 --- [ol-5-thread-103] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:22:59.001 INFO 2123 --- [ol-5-thread-103] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:23:00.020 INFO 2123 --- [ol-5-thread-103] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:23:00.711 INFO 2123 --- [ol-5-thread-103] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:23:01.519 INFO 2123 --- [ol-5-thread-103] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:23:02.400 INFO 2123 --- [ol-5-thread-103] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:23:03.198 INFO 2123 --- [ol-5-thread-103] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:23:03.895 INFO 2123 --- [ol-5-thread-103] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:23:04.553 INFO 2123 --- [ol-5-thread-103] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:23:05.153 INFO 2123 --- [ol-5-thread-103] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:23:05.826 INFO 2123 --- [ol-5-thread-103] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:23:06.488 INFO 2123 --- [ol-5-thread-103] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:23:07.088 INFO 2123 --- [ol-5-thread-103] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:23:07.869 INFO 2123 --- [ol-5-thread-103] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:23:08.547 INFO 2123 --- [ol-5-thread-103] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:23:09.188 INFO 2123 --- [ol-5-thread-103] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:23:09.869 INFO 2123 --- [ol-5-thread-103] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:23:10.512 INFO 2123 --- [ol-5-thread-103] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:23:11.203 INFO 2123 --- [ol-5-thread-103] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:23:11.866 INFO 2123 --- [ol-5-thread-103] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:23:12.732 INFO 2123 --- [ol-5-thread-103] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:23:13.494 INFO 2123 --- [ol-5-thread-103] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:23:16.134 INFO 2123 --- [ol-5-thread-103] o.ihtsdo.otf.snomedboot.ReleaseImporter : 5112181 relationships read from sct2_Relationship_Full_INT_20180731.txt
2018-11-22 07:23:16.134 INFO 2123 --- [ol-5-thread-103] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20070131
2018-11-22 07:23:16.135 INFO 2123 --- [ol-5-thread-107] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20070131
2018-11-22 07:23:16.135 INFO 2123 --- [ol-5-thread-107] o.ihtsdo.otf.snomedboot.ReleaseImporter : 11 reference set members read from sct2_sRefset_OWLAxiomFull_INT_20180731.txt
2018-11-22 07:23:16.135 INFO 2123 --- [ol-5-thread-103] o.ihtsdo.otf.snomedboot.ReleaseImporter : 144 reference set members read from der2_ssccRefset_MRCMAttributeRangeFull_INT_20180731.txt
2018-11-22 07:23:16.135 INFO 2123 --- [ol-5-thread-109] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20070131
2018-11-22 07:23:16.135 INFO 2123 --- [ol-5-thread-108] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20070131
2018-11-22 07:23:16.135 INFO 2123 --- [ol-5-thread-103] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20070131
2018-11-22 07:23:16.135 INFO 2123 --- [ol-5-thread-107] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20070131
2018-11-22 07:23:16.135 INFO 2123 --- [ol-5-thread-107] o.ihtsdo.otf.snomedboot.ReleaseImporter : 3 reference set members read from der2_cRefset_MRCMModuleScopeFull_INT_20180731.txt
2018-11-22 07:23:16.135 INFO 2123 --- [ol-5-thread-103] o.ihtsdo.otf.snomedboot.ReleaseImporter : 4 reference set members read from der2_ciRefset_DescriptionTypeFull_INT_20180731.txt
2018-11-22 07:23:16.135 INFO 2123 --- [ol-5-thread-110] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20070131
2018-11-22 07:23:16.136 INFO 2123 --- [ol-5-thread-108] o.ihtsdo.otf.snomedboot.ReleaseImporter : 167 reference set members read from der2_cciRefset_RefsetDescriptorFull_INT_20180731.txt
2018-11-22 07:23:16.136 INFO 2123 --- [ol-5-thread-109] o.ihtsdo.otf.snomedboot.ReleaseImporter : 7 reference set members read from sct2_sRefset_OWLOntologyFull_INT_20180731.txt
2018-11-22 07:23:16.136 INFO 2123 --- [ol-5-thread-109] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20070131
2018-11-22 07:23:16.136 INFO 2123 --- [ol-5-thread-108] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20070131
2018-11-22 07:23:16.136 INFO 2123 --- [ol-5-thread-111] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20070131
2018-11-22 07:23:16.137 INFO 2123 --- [ol-5-thread-107] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20070131
2018-11-22 07:23:16.138 INFO 2123 --- [ol-5-thread-109] o.ihtsdo.otf.snomedboot.ReleaseImporter : 36 reference set members read from der2_sssssssRefset_MRCMDomainFull_INT_20180731.txt
2018-11-22 07:23:16.136 INFO 2123 --- [ol-5-thread-103] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20070131
2018-11-22 07:23:16.139 INFO 2123 --- [ol-5-thread-103] o.ihtsdo.otf.snomedboot.ReleaseImporter : 154 reference set members read from der2_cissccRefset_MRCMAttributeDomainFull_INT_20180731.txt
2018-11-22 07:23:16.139 INFO 2123 --- [ol-5-thread-112] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20070131
2018-11-22 07:23:16.150 INFO 2123 --- [ol-5-thread-103] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20070131
2018-11-22 07:23:16.150 INFO 2123 --- [ol-5-thread-113] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20070131
2018-11-22 07:23:16.151 INFO 2123 --- [ol-5-thread-113] o.ihtsdo.otf.snomedboot.ReleaseImporter : 56 reference set members read from der2_ssRefset_ModuleDependencyFull_INT_20180731.txt
2018-11-22 07:23:16.231 INFO 2123 --- [ol-5-thread-110] o.ihtsdo.otf.snomedboot.ReleaseImporter : 19870 reference set members read from der2_Refset_SimpleFull_INT_20180731.txt
2018-11-22 07:23:16.704 INFO 2123 --- [ol-5-thread-108] i.k.elasticvc.api.ComponentService : Saving batch of 1478 Concepts
2018-11-22 07:23:16.931 INFO 2123 --- [ol-5-thread-108] i.k.elasticvc.api.ComponentService : Saving batch of 3671 Descriptions
2018-11-22 07:23:17.214 INFO 2123 --- [ol-5-thread-112] o.ihtsdo.otf.snomedboot.ReleaseImporter : 224459 reference set members read from der2_iisssccRefset_ExtendedMapFull_INT_20180731.txt
2018-11-22 07:23:17.379 INFO 2123 --- [ol-5-thread-108] i.k.elasticvc.api.ComponentService : Saving batch of 339 Relationships
2018-11-22 07:23:17.837 INFO 2123 --- [ol-5-thread-108] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:23:18.832 INFO 2123 --- [ol-5-thread-108] o.ihtsdo.otf.snomedboot.ReleaseImporter : 167899 reference set members read from der2_cRefset_AssociationFull_INT_20180731.txt
2018-11-22 07:23:19.472 INFO 2123 --- [ol-5-thread-111] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:23:20.883 INFO 2123 --- [ol-5-thread-103] o.ihtsdo.otf.snomedboot.ReleaseImporter : 484195 reference set members read from der2_sRefset_SimpleMapFull_INT_20180731.txt
2018-11-22 07:23:21.821 INFO 2123 --- [ol-5-thread-111] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:23:22.912 INFO 2123 --- [ol-5-thread-107] o.ihtsdo.otf.snomedboot.ReleaseImporter : 665802 reference set members read from der2_cRefset_AttributeValueFull_INT_20180731.txt
2018-11-22 07:23:23.699 INFO 2123 --- [ol-5-thread-111] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:23:25.789 INFO 2123 --- [ol-5-thread-111] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:23:29.459 INFO 2123 --- [ol-5-thread-111] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:23:33.090 INFO 2123 --- [ol-5-thread-111] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:23:37.338 INFO 2123 --- [ol-5-thread-111] o.ihtsdo.otf.snomedboot.ReleaseImporter : 3207060 reference set members read from der2_cRefset_LanguageFull-en_INT_20180731.txt
2018-11-22 07:23:38.137 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 3097 ReferenceSetMembers
2018-11-22 07:23:39.483 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: started
2018-11-22 07:23:39.483 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: get branch criteria took 0.0 seconds
2018-11-22 07:23:39.505 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed is-a relationships. took 0.022 seconds
2018-11-22 07:23:39.526 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed axiom is-a fragments. took 0.021 seconds
2018-11-22 07:23:39.538 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : Performing incremental update of stated semantic index
2018-11-22 07:23:39.563 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect existingAncestors from QueryConcept. took 0.037 seconds
2018-11-22 07:23:39.589 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect existingDescendants from QueryConcept. took 0.026 seconds
2018-11-22 07:23:39.619 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Build existing nodes from Relationships. took 0.03 seconds
2018-11-22 07:23:39.644 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Build existing nodes from Axioms. took 0.025 seconds
2018-11-22 07:23:39.644 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : 0 existing nodes loaded.
2018-11-22 07:23:40.539 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Update graph using changed relationships. took 0.895 seconds
2018-11-22 07:23:40.540 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Update graph using changed axioms. took 0.001 seconds
2018-11-22 07:23:40.574 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect existingDescendants from QueryConcept. took 0.034 seconds
2018-11-22 07:23:40.574 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Save updated QueryConcepts took 0.0 seconds
2018-11-22 07:23:40.574 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: total took 1.091 seconds
2018-11-22 07:23:40.574 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: started
2018-11-22 07:23:40.574 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: get branch criteria took 0.0 seconds
2018-11-22 07:23:44.970 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect changed is-a relationships. took 4.396 seconds
2018-11-22 07:23:44.970 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : Performing incremental update of inferred semantic index
2018-11-22 07:23:46.904 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect existingAncestors from QueryConcept. took 1.934 seconds
2018-11-22 07:23:51.007 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect existingDescendants from QueryConcept. took 4.103 seconds
2018-11-22 07:23:52.763 WARN 2123 --- [/O dispatcher 3] org.elasticsearch.client.RestClient : request [GET http://localhost:9200/es-rel/relationship/_search?typed_keys=true&ignore_unavailable=false&expand_wildcards=open&allow_no_indices=true&scroll=60000ms&search_type=query_then_fetch&batched_reduce_size=512] returned 1 warnings: [299 Elasticsearch-6.5.1-8c58350 "Deprecated: the number of terms [84840] used in the Terms Query request has exceeded the allowed maximum of [65536]. This maximum can be set by changing the [index.max_terms_count] index level setting." "Thu, 22 Nov 2018 07:23:51 GMT"]
2018-11-22 07:24:10.671 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Build existing nodes from Relationships. took 19.664 seconds
2018-11-22 07:24:10.671 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : 84676 existing nodes loaded.
2018-11-22 07:24:25.577 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Update graph using changed relationships. took 14.906 seconds
2018-11-22 07:24:39.149 WARN 2123 --- [/O dispatcher 3] org.elasticsearch.client.RestClient : request [GET http://localhost:9200/es-query/query-concept/_search?typed_keys=true&ignore_unavailable=false&expand_wildcards=open&allow_no_indices=true&scroll=60000ms&search_type=query_then_fetch&batched_reduce_size=512] returned 1 warnings: [299 Elasticsearch-6.5.1-8c58350 "Deprecated: the number of terms [91668] used in the Terms Query request has exceeded the allowed maximum of [65536]. This maximum can be set by changing the [index.max_terms_count] index level setting." "Thu, 22 Nov 2018 07:24:36 GMT"]
2018-11-22 07:24:57.211 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect existingDescendants from QueryConcept. took 31.634 seconds
2018-11-22 07:24:57.252 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:25:00.786 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:25:04.431 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:25:07.579 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:25:11.051 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:25:17.385 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:25:24.358 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:25:35.456 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:25:43.393 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:25:48.248 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 1575 QueryConcepts
2018-11-22 07:25:49.094 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Save updated QueryConcepts took 51.883 seconds
2018-11-22 07:25:49.094 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: total took 128.52 seconds
2018-11-22 07:25:49.109 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Completed commit on MAIN at 1542871317084
2018-11-22 07:25:49.112 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Creating Code System version - Code System: SNOMEDCT, Version: 2007-01-31, Release Branch: MAIN/2007-01-31
2018-11-22 07:25:49.112 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Versioning content...
2018-11-22 07:25:49.122 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Open commit on MAIN at 1542871549122
2018-11-22 07:25:49.171 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: started
2018-11-22 07:25:49.171 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: get branch criteria took 0.0 seconds
2018-11-22 07:25:49.173 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed is-a relationships. took 0.002 seconds
2018-11-22 07:25:49.175 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed axiom is-a fragments. took 0.002 seconds
2018-11-22 07:25:49.177 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: started
2018-11-22 07:25:49.177 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: get branch criteria took 0.0 seconds
2018-11-22 07:25:49.180 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect changed is-a relationships. took 0.003 seconds
2018-11-22 07:25:49.194 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Completed commit on MAIN at 1542871549122
2018-11-22 07:25:49.194 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Creating version branch content...
2018-11-22 07:25:49.205 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Creating branch Branch{path=MAIN/2007-01-31, base=1542871549122, head=1542871549194, start=1542871549194, end=null}
2018-11-22 07:25:49.213 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Persisting Code System Version...
2018-11-22 07:25:49.233 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Versioning complete.
2018-11-22 07:25:49.243 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Open commit on MAIN at 1542871549243
2018-11-22 07:25:49.243 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Loading release delta 20070731
2018-11-22 07:25:49.243 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading concepts for release 20070731
2018-11-22 07:25:49.973 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Concepts
2018-11-22 07:25:50.665 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : 581635 concepts read from sct2_Concept_Full_INT_20180731.txt
2018-11-22 07:25:50.665 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : includedReferenceSetPathPatterns: []
2018-11-22 07:25:50.666 INFO 2123 --- [ol-5-thread-116] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading descriptions for release 20070731
2018-11-22 07:25:50.666 INFO 2123 --- [ol-5-thread-114] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading relationships for release 20070731
2018-11-22 07:25:50.666 INFO 2123 --- [ol-5-thread-115] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading relationships for release 20070731
2018-11-22 07:25:50.666 INFO 2123 --- [ol-5-thread-117] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading descriptions for release 20070731
2018-11-22 07:25:50.805 INFO 2123 --- [ol-5-thread-117] o.ihtsdo.otf.snomedboot.ReleaseImporter : 5151 descriptions read from sct2_TextDefinition_Full-en_INT_20180731.txt
2018-11-22 07:25:51.508 INFO 2123 --- [ol-5-thread-116] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 07:25:52.717 INFO 2123 --- [ol-5-thread-114] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:25:53.911 INFO 2123 --- [ol-5-thread-115] o.ihtsdo.otf.snomedboot.ReleaseImporter : 1130957 relationships read from sct2_StatedRelationship_Full_INT_20180731.txt
2018-11-22 07:25:54.305 INFO 2123 --- [ol-5-thread-116] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 07:25:56.052 INFO 2123 --- [ol-5-thread-114] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:25:57.624 INFO 2123 --- [ol-5-thread-116] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 07:25:58.773 INFO 2123 --- [ol-5-thread-114] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:25:59.599 INFO 2123 --- [ol-5-thread-116] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 07:26:01.917 INFO 2123 --- [ol-5-thread-114] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:26:02.492 INFO 2123 --- [ol-5-thread-116] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 07:26:04.447 INFO 2123 --- [ol-5-thread-116] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 07:26:04.830 INFO 2123 --- [ol-5-thread-114] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:26:06.308 INFO 2123 --- [ol-5-thread-116] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 07:26:07.182 INFO 2123 --- [ol-5-thread-116] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 07:26:07.922 INFO 2123 --- [ol-5-thread-116] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 07:26:08.237 INFO 2123 --- [ol-5-thread-114] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:26:10.314 INFO 2123 --- [ol-5-thread-116] o.ihtsdo.otf.snomedboot.ReleaseImporter : 2513952 descriptions read from sct2_Description_Full-en_INT_20180731.txt
2018-11-22 07:26:11.014 INFO 2123 --- [ol-5-thread-114] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:26:12.653 INFO 2123 --- [ol-5-thread-114] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:26:14.017 INFO 2123 --- [ol-5-thread-114] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:26:15.792 INFO 2123 --- [ol-5-thread-114] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:26:17.286 INFO 2123 --- [ol-5-thread-114] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:26:18.777 INFO 2123 --- [ol-5-thread-114] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:26:21.692 INFO 2123 --- [ol-5-thread-114] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:26:23.157 INFO 2123 --- [ol-5-thread-114] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:26:24.379 INFO 2123 --- [ol-5-thread-114] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:26:27.205 INFO 2123 --- [ol-5-thread-114] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:26:28.558 INFO 2123 --- [ol-5-thread-114] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:26:30.595 INFO 2123 --- [ol-5-thread-114] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:26:33.776 INFO 2123 --- [ol-5-thread-114] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:26:36.813 INFO 2123 --- [ol-5-thread-114] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:26:39.201 INFO 2123 --- [ol-5-thread-114] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:26:40.531 INFO 2123 --- [ol-5-thread-114] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:26:42.804 INFO 2123 --- [ol-5-thread-114] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:26:45.201 INFO 2123 --- [ol-5-thread-114] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:26:46.665 INFO 2123 --- [ol-5-thread-114] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:26:47.415 INFO 2123 --- [ol-5-thread-114] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:26:50.336 INFO 2123 --- [ol-5-thread-114] o.ihtsdo.otf.snomedboot.ReleaseImporter : 5112181 relationships read from sct2_Relationship_Full_INT_20180731.txt
2018-11-22 07:26:50.336 INFO 2123 --- [ol-5-thread-114] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20070731
2018-11-22 07:26:50.336 INFO 2123 --- [ol-5-thread-115] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20070731
2018-11-22 07:26:50.336 INFO 2123 --- [ol-5-thread-116] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20070731
2018-11-22 07:26:50.336 INFO 2123 --- [ol-5-thread-116] o.ihtsdo.otf.snomedboot.ReleaseImporter : 11 reference set members read from sct2_sRefset_OWLAxiomFull_INT_20180731.txt
2018-11-22 07:26:50.336 INFO 2123 --- [ol-5-thread-115] o.ihtsdo.otf.snomedboot.ReleaseImporter : 167 reference set members read from der2_cciRefset_RefsetDescriptorFull_INT_20180731.txt
2018-11-22 07:26:50.336 INFO 2123 --- [ol-5-thread-117] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20070731
2018-11-22 07:26:50.337 INFO 2123 --- [ol-5-thread-117] o.ihtsdo.otf.snomedboot.ReleaseImporter : 7 reference set members read from sct2_sRefset_OWLOntologyFull_INT_20180731.txt
2018-11-22 07:26:50.337 INFO 2123 --- [ol-5-thread-117] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20070731
2018-11-22 07:26:50.337 INFO 2123 --- [ol-5-thread-117] o.ihtsdo.otf.snomedboot.ReleaseImporter : 4 reference set members read from der2_ciRefset_DescriptionTypeFull_INT_20180731.txt
2018-11-22 07:26:50.337 INFO 2123 --- [ol-5-thread-115] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20070731
2018-11-22 07:26:50.337 INFO 2123 --- [ol-5-thread-115] o.ihtsdo.otf.snomedboot.ReleaseImporter : 3 reference set members read from der2_cRefset_MRCMModuleScopeFull_INT_20180731.txt
2018-11-22 07:26:50.337 INFO 2123 --- [ol-5-thread-114] o.ihtsdo.otf.snomedboot.ReleaseImporter : 144 reference set members read from der2_ssccRefset_MRCMAttributeRangeFull_INT_20180731.txt
2018-11-22 07:26:50.337 INFO 2123 --- [ol-5-thread-118] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20070731
2018-11-22 07:26:50.338 INFO 2123 --- [ol-5-thread-116] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20070731
2018-11-22 07:26:50.338 INFO 2123 --- [ol-5-thread-117] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20070731
2018-11-22 07:26:50.338 INFO 2123 --- [ol-5-thread-115] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20070731
2018-11-22 07:26:50.345 INFO 2123 --- [ol-5-thread-117] o.ihtsdo.otf.snomedboot.ReleaseImporter : 154 reference set members read from der2_cissccRefset_MRCMAttributeDomainFull_INT_20180731.txt
2018-11-22 07:26:50.346 INFO 2123 --- [ol-5-thread-114] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20070731
2018-11-22 07:26:50.346 INFO 2123 --- [ol-5-thread-117] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20070731
2018-11-22 07:26:50.346 INFO 2123 --- [ol-5-thread-120] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20070731
2018-11-22 07:26:50.347 INFO 2123 --- [ol-5-thread-117] o.ihtsdo.otf.snomedboot.ReleaseImporter : 56 reference set members read from der2_ssRefset_ModuleDependencyFull_INT_20180731.txt
2018-11-22 07:26:50.354 INFO 2123 --- [ol-5-thread-121] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20070731
2018-11-22 07:26:50.354 INFO 2123 --- [ol-5-thread-119] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20070731
2018-11-22 07:26:50.356 INFO 2123 --- [ol-5-thread-119] o.ihtsdo.otf.snomedboot.ReleaseImporter : 36 reference set members read from der2_sssssssRefset_MRCMDomainFull_INT_20180731.txt
2018-11-22 07:26:50.442 INFO 2123 --- [ol-5-thread-118] o.ihtsdo.otf.snomedboot.ReleaseImporter : 19870 reference set members read from der2_Refset_SimpleFull_INT_20180731.txt
2018-11-22 07:26:50.978 INFO 2123 --- [ol-5-thread-114] o.ihtsdo.otf.snomedboot.ReleaseImporter : 167899 reference set members read from der2_cRefset_AssociationFull_INT_20180731.txt
2018-11-22 07:26:51.087 INFO 2123 --- [ol-5-thread-116] i.k.elasticvc.api.ComponentService : Saving batch of 377 Concepts
2018-11-22 07:26:51.219 INFO 2123 --- [ol-5-thread-116] i.k.elasticvc.api.ComponentService : Saving batch of 111 Descriptions
2018-11-22 07:26:51.462 INFO 2123 --- [ol-5-thread-116] i.k.elasticvc.api.ComponentService : Saving batch of 196 Relationships
2018-11-22 07:26:51.494 INFO 2123 --- [ol-5-thread-120] o.ihtsdo.otf.snomedboot.ReleaseImporter : 224459 reference set members read from der2_iisssccRefset_ExtendedMapFull_INT_20180731.txt
2018-11-22 07:26:52.172 INFO 2123 --- [ol-5-thread-116] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:26:54.082 INFO 2123 --- [ol-5-thread-115] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:26:55.300 INFO 2123 --- [ol-5-thread-121] o.ihtsdo.otf.snomedboot.ReleaseImporter : 484195 reference set members read from der2_sRefset_SimpleMapFull_INT_20180731.txt
2018-11-22 07:26:55.597 INFO 2123 --- [ol-5-thread-115] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:26:57.026 INFO 2123 --- [ol-5-thread-115] o.ihtsdo.otf.snomedboot.ReleaseImporter : 665802 reference set members read from der2_cRefset_AttributeValueFull_INT_20180731.txt
2018-11-22 07:26:57.672 INFO 2123 --- [ol-5-thread-116] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:26:59.421 INFO 2123 --- [ol-5-thread-116] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:27:01.341 INFO 2123 --- [ol-5-thread-116] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:27:03.148 INFO 2123 --- [ol-5-thread-116] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:27:04.913 INFO 2123 --- [ol-5-thread-116] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:27:06.503 INFO 2123 --- [ol-5-thread-116] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:27:07.852 INFO 2123 --- [ol-5-thread-116] o.ihtsdo.otf.snomedboot.ReleaseImporter : 3207060 reference set members read from der2_cRefset_LanguageFull-en_INT_20180731.txt
2018-11-22 07:27:08.114 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 3910 ReferenceSetMembers
2018-11-22 07:27:08.830 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: started
2018-11-22 07:27:08.830 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: get branch criteria took 0.0 seconds
2018-11-22 07:27:08.834 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed is-a relationships. took 0.004 seconds
2018-11-22 07:27:08.835 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed axiom is-a fragments. took 0.001 seconds
2018-11-22 07:27:08.840 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : Performing incremental update of stated semantic index
2018-11-22 07:27:08.842 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect existingAncestors from QueryConcept. took 0.007 seconds
2018-11-22 07:27:08.844 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect existingDescendants from QueryConcept. took 0.002 seconds
2018-11-22 07:27:08.850 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Build existing nodes from Relationships. took 0.006 seconds
2018-11-22 07:27:08.851 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Build existing nodes from Axioms. took 0.001 seconds
2018-11-22 07:27:08.852 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : 0 existing nodes loaded.
2018-11-22 07:27:08.871 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Update graph using changed relationships. took 0.02 seconds
2018-11-22 07:27:08.873 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Update graph using changed axioms. took 0.002 seconds
2018-11-22 07:27:08.940 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect existingDescendants from QueryConcept. took 0.067 seconds
2018-11-22 07:27:08.940 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Save updated QueryConcepts took 0.0 seconds
2018-11-22 07:27:08.940 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: total took 0.11 seconds
2018-11-22 07:27:08.940 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: started
2018-11-22 07:27:08.940 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: get branch criteria took 0.0 seconds
2018-11-22 07:27:10.260 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect changed is-a relationships. took 1.32 seconds
2018-11-22 07:27:10.260 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : Performing incremental update of inferred semantic index
2018-11-22 07:27:11.897 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect existingAncestors from QueryConcept. took 1.637 seconds
2018-11-22 07:27:17.540 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect existingDescendants from QueryConcept. took 5.643 seconds
2018-11-22 07:27:20.844 WARN 2123 --- [/O dispatcher 1] org.elasticsearch.client.RestClient : request [GET http://localhost:9200/es-rel/relationship/_search?typed_keys=true&ignore_unavailable=false&expand_wildcards=open&allow_no_indices=true&scroll=60000ms&search_type=query_then_fetch&batched_reduce_size=512] returned 1 warnings: [299 Elasticsearch-6.5.1-8c58350 "Deprecated: the number of terms [66694] used in the Terms Query request has exceeded the allowed maximum of [65536]. This maximum can be set by changing the [index.max_terms_count] index level setting." "Thu, 22 Nov 2018 07:27:17 GMT"]
2018-11-22 07:27:49.238 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Build existing nodes from Relationships. took 31.698 seconds
2018-11-22 07:27:49.238 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : 67433 existing nodes loaded.
2018-11-22 07:27:54.685 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Update graph using changed relationships. took 5.447 seconds
2018-11-22 07:28:00.010 WARN 2123 --- [/O dispatcher 1] org.elasticsearch.client.RestClient : request [GET http://localhost:9200/es-query/query-concept/_search?typed_keys=true&ignore_unavailable=false&expand_wildcards=open&allow_no_indices=true&scroll=60000ms&search_type=query_then_fetch&batched_reduce_size=512] returned 1 warnings: [299 Elasticsearch-6.5.1-8c58350 "Deprecated: the number of terms [65683] used in the Terms Query request has exceeded the allowed maximum of [65536]. This maximum can be set by changing the [index.max_terms_count] index level setting." "Thu, 22 Nov 2018 07:27:58 GMT"]
2018-11-22 07:28:11.049 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect existingDescendants from QueryConcept. took 16.364 seconds
2018-11-22 07:28:11.078 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:28:22.981 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:28:36.603 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:28:48.549 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:28:51.777 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:28:54.771 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:28:57.930 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5613 QueryConcepts
2018-11-22 07:29:00.277 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Save updated QueryConcepts took 49.228 seconds
2018-11-22 07:29:00.277 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: total took 111.337 seconds
2018-11-22 07:29:00.295 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Completed commit on MAIN at 1542871549243
2018-11-22 07:29:00.298 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Creating Code System version - Code System: SNOMEDCT, Version: 2007-07-31, Release Branch: MAIN/2007-07-31
2018-11-22 07:29:00.299 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Versioning content...
2018-11-22 07:29:00.311 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Open commit on MAIN at 1542871740311
2018-11-22 07:29:00.361 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: started
2018-11-22 07:29:00.361 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: get branch criteria took 0.0 seconds
2018-11-22 07:29:00.363 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed is-a relationships. took 0.002 seconds
2018-11-22 07:29:00.365 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed axiom is-a fragments. took 0.002 seconds
2018-11-22 07:29:00.368 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: started
2018-11-22 07:29:00.368 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: get branch criteria took 0.0 seconds
2018-11-22 07:29:00.370 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect changed is-a relationships. took 0.002 seconds
2018-11-22 07:29:00.387 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Completed commit on MAIN at 1542871740311
2018-11-22 07:29:00.387 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Creating version branch content...
2018-11-22 07:29:00.392 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Creating branch Branch{path=MAIN/2007-07-31, base=1542871740311, head=1542871740387, start=1542871740387, end=null}
2018-11-22 07:29:00.407 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Persisting Code System Version...
2018-11-22 07:29:00.426 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Versioning complete.
2018-11-22 07:29:00.438 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Open commit on MAIN at 1542871740438
2018-11-22 07:29:00.438 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Loading release delta 20080131
2018-11-22 07:29:00.438 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading concepts for release 20080131
2018-11-22 07:29:01.311 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : 581635 concepts read from sct2_Concept_Full_INT_20180731.txt
2018-11-22 07:29:01.311 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : includedReferenceSetPathPatterns: []
2018-11-22 07:29:01.312 INFO 2123 --- [ol-5-thread-122] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading relationships for release 20080131
2018-11-22 07:29:01.314 INFO 2123 --- [ol-5-thread-123] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading relationships for release 20080131
2018-11-22 07:29:01.314 INFO 2123 --- [ol-5-thread-124] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading descriptions for release 20080131
2018-11-22 07:29:01.323 INFO 2123 --- [ol-5-thread-125] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading descriptions for release 20080131
2018-11-22 07:29:01.395 INFO 2123 --- [ol-5-thread-125] o.ihtsdo.otf.snomedboot.ReleaseImporter : 5151 descriptions read from sct2_TextDefinition_Full-en_INT_20180731.txt
2018-11-22 07:29:03.650 INFO 2123 --- [ol-5-thread-122] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:29:04.820 INFO 2123 --- [ol-5-thread-123] o.ihtsdo.otf.snomedboot.ReleaseImporter : 1130957 relationships read from sct2_StatedRelationship_Full_INT_20180731.txt
2018-11-22 07:29:07.901 INFO 2123 --- [ol-5-thread-124] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 07:29:08.132 INFO 2123 --- [ol-5-thread-122] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:29:10.911 INFO 2123 --- [ol-5-thread-124] o.ihtsdo.otf.snomedboot.ReleaseImporter : 2513952 descriptions read from sct2_Description_Full-en_INT_20180731.txt
2018-11-22 07:29:11.349 INFO 2123 --- [ol-5-thread-122] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:29:13.557 INFO 2123 --- [ol-5-thread-122] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:29:15.409 INFO 2123 --- [ol-5-thread-122] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:29:17.231 INFO 2123 --- [ol-5-thread-122] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:29:18.957 INFO 2123 --- [ol-5-thread-122] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:29:20.258 INFO 2123 --- [ol-5-thread-122] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:29:21.470 INFO 2123 --- [ol-5-thread-122] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:29:23.593 INFO 2123 --- [ol-5-thread-122] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:29:25.631 INFO 2123 --- [ol-5-thread-122] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:29:26.681 INFO 2123 --- [ol-5-thread-122] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:29:27.609 INFO 2123 --- [ol-5-thread-122] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:29:28.369 INFO 2123 --- [ol-5-thread-122] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:29:29.022 INFO 2123 --- [ol-5-thread-122] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:29:29.684 INFO 2123 --- [ol-5-thread-122] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:29:31.060 INFO 2123 --- [ol-5-thread-122] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:29:32.345 INFO 2123 --- [ol-5-thread-122] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:29:35.646 INFO 2123 --- [ol-5-thread-122] o.ihtsdo.otf.snomedboot.ReleaseImporter : 5112181 relationships read from sct2_Relationship_Full_INT_20180731.txt
2018-11-22 07:29:35.646 INFO 2123 --- [ol-5-thread-122] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20080131
2018-11-22 07:29:35.647 INFO 2123 --- [ol-5-thread-124] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20080131
2018-11-22 07:29:35.647 INFO 2123 --- [ol-5-thread-124] o.ihtsdo.otf.snomedboot.ReleaseImporter : 11 reference set members read from sct2_sRefset_OWLAxiomFull_INT_20180731.txt
2018-11-22 07:29:35.647 INFO 2123 --- [ol-5-thread-123] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20080131
2018-11-22 07:29:35.647 INFO 2123 --- [ol-5-thread-123] o.ihtsdo.otf.snomedboot.ReleaseImporter : 167 reference set members read from der2_cciRefset_RefsetDescriptorFull_INT_20180731.txt
2018-11-22 07:29:35.647 INFO 2123 --- [ol-5-thread-125] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20080131
2018-11-22 07:29:35.648 INFO 2123 --- [ol-5-thread-125] o.ihtsdo.otf.snomedboot.ReleaseImporter : 7 reference set members read from sct2_sRefset_OWLOntologyFull_INT_20180731.txt
2018-11-22 07:29:35.648 INFO 2123 --- [ol-5-thread-124] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20080131
2018-11-22 07:29:35.648 INFO 2123 --- [ol-5-thread-122] o.ihtsdo.otf.snomedboot.ReleaseImporter : 144 reference set members read from der2_ssccRefset_MRCMAttributeRangeFull_INT_20180731.txt
2018-11-22 07:29:35.648 INFO 2123 --- [ol-5-thread-124] o.ihtsdo.otf.snomedboot.ReleaseImporter : 3 reference set members read from der2_cRefset_MRCMModuleScopeFull_INT_20180731.txt
2018-11-22 07:29:35.648 INFO 2123 --- [ol-5-thread-123] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20080131
2018-11-22 07:29:35.648 INFO 2123 --- [ol-5-thread-123] o.ihtsdo.otf.snomedboot.ReleaseImporter : 4 reference set members read from der2_ciRefset_DescriptionTypeFull_INT_20180731.txt
2018-11-22 07:29:35.648 INFO 2123 --- [ol-5-thread-126] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20080131
2018-11-22 07:29:35.649 INFO 2123 --- [ol-5-thread-123] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20080131
2018-11-22 07:29:35.649 INFO 2123 --- [ol-5-thread-127] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20080131
2018-11-22 07:29:35.649 INFO 2123 --- [ol-5-thread-128] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20080131
2018-11-22 07:29:35.650 INFO 2123 --- [ol-5-thread-124] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20080131
2018-11-22 07:29:35.650 INFO 2123 --- [ol-5-thread-125] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20080131
2018-11-22 07:29:35.651 INFO 2123 --- [ol-5-thread-123] o.ihtsdo.otf.snomedboot.ReleaseImporter : 36 reference set members read from der2_sssssssRefset_MRCMDomainFull_INT_20180731.txt
2018-11-22 07:29:35.651 INFO 2123 --- [ol-5-thread-122] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20080131
2018-11-22 07:29:35.652 INFO 2123 --- [ol-5-thread-122] o.ihtsdo.otf.snomedboot.ReleaseImporter : 154 reference set members read from der2_cissccRefset_MRCMAttributeDomainFull_INT_20180731.txt
2018-11-22 07:29:35.658 INFO 2123 --- [ol-5-thread-122] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20080131
2018-11-22 07:29:35.661 INFO 2123 --- [ol-5-thread-129] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20080131
2018-11-22 07:29:35.661 INFO 2123 --- [ol-5-thread-129] o.ihtsdo.otf.snomedboot.ReleaseImporter : 56 reference set members read from der2_ssRefset_ModuleDependencyFull_INT_20180731.txt
2018-11-22 07:29:35.753 INFO 2123 --- [ol-5-thread-126] o.ihtsdo.otf.snomedboot.ReleaseImporter : 19870 reference set members read from der2_Refset_SimpleFull_INT_20180731.txt
2018-11-22 07:29:36.337 INFO 2123 --- [ol-5-thread-124] i.k.elasticvc.api.ComponentService : Saving batch of 4802 Concepts
2018-11-22 07:29:36.739 INFO 2123 --- [ol-5-thread-128] o.ihtsdo.otf.snomedboot.ReleaseImporter : 224459 reference set members read from der2_iisssccRefset_ExtendedMapFull_INT_20180731.txt
2018-11-22 07:29:38.453 INFO 2123 --- [ol-5-thread-124] i.k.elasticvc.api.ComponentService : Saving batch of 4614 Descriptions
2018-11-22 07:29:39.001 INFO 2123 --- [ol-5-thread-124] i.k.elasticvc.api.ComponentService : Saving batch of 2127 Relationships
2018-11-22 07:29:39.713 INFO 2123 --- [ol-5-thread-124] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:29:40.738 INFO 2123 --- [ol-5-thread-124] o.ihtsdo.otf.snomedboot.ReleaseImporter : 167899 reference set members read from der2_cRefset_AssociationFull_INT_20180731.txt
2018-11-22 07:29:41.220 INFO 2123 --- [ol-5-thread-122] o.ihtsdo.otf.snomedboot.ReleaseImporter : 484195 reference set members read from der2_sRefset_SimpleMapFull_INT_20180731.txt
2018-11-22 07:29:42.160 INFO 2123 --- [ol-5-thread-125] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:29:45.342 INFO 2123 --- [ol-5-thread-127] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:29:48.830 INFO 2123 --- [ol-5-thread-125] o.ihtsdo.otf.snomedboot.ReleaseImporter : 665802 reference set members read from der2_cRefset_AttributeValueFull_INT_20180731.txt
2018-11-22 07:29:49.457 INFO 2123 --- [ol-5-thread-127] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:29:51.442 INFO 2123 --- [ol-5-thread-127] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:29:53.270 INFO 2123 --- [ol-5-thread-127] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:29:55.310 INFO 2123 --- [ol-5-thread-127] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:29:57.130 INFO 2123 --- [ol-5-thread-127] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:29:59.007 INFO 2123 --- [ol-5-thread-127] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:30:00.850 INFO 2123 --- [ol-5-thread-127] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:30:02.552 INFO 2123 --- [ol-5-thread-127] o.ihtsdo.otf.snomedboot.ReleaseImporter : 3207060 reference set members read from der2_cRefset_LanguageFull-en_INT_20180731.txt
2018-11-22 07:30:02.780 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 3628 ReferenceSetMembers
2018-11-22 07:30:03.493 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: started
2018-11-22 07:30:03.493 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: get branch criteria took 0.0 seconds
2018-11-22 07:30:03.496 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed is-a relationships. took 0.003 seconds
2018-11-22 07:30:03.498 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed axiom is-a fragments. took 0.002 seconds
2018-11-22 07:30:03.501 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : Performing incremental update of stated semantic index
2018-11-22 07:30:03.504 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect existingAncestors from QueryConcept. took 0.006 seconds
2018-11-22 07:30:03.507 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect existingDescendants from QueryConcept. took 0.003 seconds
2018-11-22 07:30:03.510 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Build existing nodes from Relationships. took 0.003 seconds
2018-11-22 07:30:03.512 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Build existing nodes from Axioms. took 0.002 seconds
2018-11-22 07:30:03.512 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : 0 existing nodes loaded.
2018-11-22 07:30:03.571 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Update graph using changed relationships. took 0.059 seconds
2018-11-22 07:30:03.573 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Update graph using changed axioms. took 0.002 seconds
2018-11-22 07:30:03.610 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect existingDescendants from QueryConcept. took 0.037 seconds
2018-11-22 07:30:03.610 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Save updated QueryConcepts took 0.0 seconds
2018-11-22 07:30:03.610 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: total took 0.117 seconds
2018-11-22 07:30:03.610 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: started
2018-11-22 07:30:03.610 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: get branch criteria took 0.0 seconds
2018-11-22 07:30:04.260 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect changed is-a relationships. took 0.65 seconds
2018-11-22 07:30:04.260 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : Performing incremental update of inferred semantic index
2018-11-22 07:30:05.180 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect existingAncestors from QueryConcept. took 0.92 seconds
2018-11-22 07:30:09.244 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect existingDescendants from QueryConcept. took 4.064 seconds
2018-11-22 07:30:12.308 WARN 2123 --- [/O dispatcher 1] org.elasticsearch.client.RestClient : request [GET http://localhost:9200/es-rel/relationship/_search?typed_keys=true&ignore_unavailable=false&expand_wildcards=open&allow_no_indices=true&scroll=60000ms&search_type=query_then_fetch&batched_reduce_size=512] returned 1 warnings: [299 Elasticsearch-6.5.1-8c58350 "Deprecated: the number of terms [67233] used in the Terms Query request has exceeded the allowed maximum of [65536]. This maximum can be set by changing the [index.max_terms_count] index level setting." "Thu, 22 Nov 2018 07:30:09 GMT"]
2018-11-22 07:30:35.063 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Build existing nodes from Relationships. took 25.819 seconds
2018-11-22 07:30:35.063 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : 68084 existing nodes loaded.
2018-11-22 07:30:43.781 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Update graph using changed relationships. took 8.718 seconds
2018-11-22 07:31:00.582 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect existingDescendants from QueryConcept. took 16.801 seconds
2018-11-22 07:31:00.608 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:31:08.887 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:31:20.034 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:31:30.835 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:31:42.022 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:31:50.796 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:31:53.733 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 951 QueryConcepts
2018-11-22 07:31:54.415 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Save updated QueryConcepts took 53.833 seconds
2018-11-22 07:31:54.415 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: total took 110.805 seconds
2018-11-22 07:31:54.429 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Completed commit on MAIN at 1542871740438
2018-11-22 07:31:54.435 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Creating Code System version - Code System: SNOMEDCT, Version: 2008-01-31, Release Branch: MAIN/2008-01-31
2018-11-22 07:31:54.435 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Versioning content...
2018-11-22 07:31:54.445 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Open commit on MAIN at 1542871914445
2018-11-22 07:31:54.494 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: started
2018-11-22 07:31:54.494 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: get branch criteria took 0.0 seconds
2018-11-22 07:31:54.496 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed is-a relationships. took 0.002 seconds
2018-11-22 07:31:54.497 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed axiom is-a fragments. took 0.001 seconds
2018-11-22 07:31:54.499 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: started
2018-11-22 07:31:54.499 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: get branch criteria took 0.0 seconds
2018-11-22 07:31:54.502 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect changed is-a relationships. took 0.003 seconds
2018-11-22 07:31:54.556 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Completed commit on MAIN at 1542871914445
2018-11-22 07:31:54.556 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Creating version branch content...
2018-11-22 07:31:54.559 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Creating branch Branch{path=MAIN/2008-01-31, base=1542871914445, head=1542871914556, start=1542871914556, end=null}
2018-11-22 07:31:54.569 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Persisting Code System Version...
2018-11-22 07:31:54.583 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Versioning complete.
2018-11-22 07:31:54.594 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Open commit on MAIN at 1542871914594
2018-11-22 07:31:54.594 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Loading release delta 20080731
2018-11-22 07:31:54.594 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading concepts for release 20080731
2018-11-22 07:31:55.100 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Concepts
2018-11-22 07:31:56.213 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Concepts
2018-11-22 07:31:56.887 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : 581635 concepts read from sct2_Concept_Full_INT_20180731.txt
2018-11-22 07:31:56.887 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : includedReferenceSetPathPatterns: []
2018-11-22 07:31:56.889 INFO 2123 --- [ol-5-thread-130] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading relationships for release 20080731
2018-11-22 07:31:56.889 INFO 2123 --- [ol-5-thread-131] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading relationships for release 20080731
2018-11-22 07:31:56.889 INFO 2123 --- [ol-5-thread-133] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading descriptions for release 20080731
2018-11-22 07:31:56.889 INFO 2123 --- [ol-5-thread-132] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading descriptions for release 20080731
2018-11-22 07:31:56.942 INFO 2123 --- [ol-5-thread-133] o.ihtsdo.otf.snomedboot.ReleaseImporter : 5151 descriptions read from sct2_TextDefinition_Full-en_INT_20180731.txt
2018-11-22 07:31:56.961 INFO 2123 --- [ol-5-thread-131] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:31:57.912 INFO 2123 --- [ol-5-thread-131] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:31:58.188 INFO 2123 --- [ol-5-thread-132] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 07:31:59.402 INFO 2123 --- [ol-5-thread-131] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:32:00.462 INFO 2123 --- [ol-5-thread-132] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 07:32:01.166 INFO 2123 --- [ol-5-thread-131] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:32:02.967 INFO 2123 --- [ol-5-thread-132] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 07:32:03.474 INFO 2123 --- [ol-5-thread-131] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:32:05.367 INFO 2123 --- [ol-5-thread-131] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:32:06.755 INFO 2123 --- [ol-5-thread-132] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
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2018-11-22 07:33:03.088 INFO 2123 --- [ol-5-thread-132] o.ihtsdo.otf.snomedboot.ReleaseImporter : 2513952 descriptions read from sct2_Description_Full-en_INT_20180731.txt
2018-11-22 07:33:03.580 INFO 2123 --- [ol-5-thread-131] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
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2018-11-22 07:35:02.922 INFO 2123 --- [ol-5-thread-131] o.ihtsdo.otf.snomedboot.ReleaseImporter : 1130957 relationships read from sct2_StatedRelationship_Full_INT_20180731.txt
2018-11-22 07:35:04.716 INFO 2123 --- [ol-5-thread-130] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
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2018-11-22 07:35:57.137 INFO 2123 --- [ol-5-thread-130] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:35:58.642 INFO 2123 --- [ol-5-thread-130] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:35:59.877 INFO 2123 --- [ol-5-thread-130] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:36:01.269 INFO 2123 --- [ol-5-thread-130] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:36:02.608 INFO 2123 --- [ol-5-thread-130] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:36:04.107 INFO 2123 --- [ol-5-thread-130] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:36:05.361 INFO 2123 --- [ol-5-thread-130] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:36:06.776 INFO 2123 --- [ol-5-thread-130] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:36:08.331 INFO 2123 --- [ol-5-thread-130] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:36:09.593 INFO 2123 --- [ol-5-thread-130] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:36:11.259 INFO 2123 --- [ol-5-thread-130] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:36:12.454 INFO 2123 --- [ol-5-thread-130] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:36:13.392 INFO 2123 --- [ol-5-thread-130] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:36:14.188 INFO 2123 --- [ol-5-thread-130] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:36:14.880 INFO 2123 --- [ol-5-thread-130] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:36:15.667 INFO 2123 --- [ol-5-thread-130] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:36:16.337 INFO 2123 --- [ol-5-thread-130] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:36:17.149 INFO 2123 --- [ol-5-thread-130] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:36:17.903 INFO 2123 --- [ol-5-thread-130] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:36:18.643 INFO 2123 --- [ol-5-thread-130] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:36:20.196 INFO 2123 --- [ol-5-thread-130] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:36:21.112 INFO 2123 --- [ol-5-thread-130] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:36:21.982 INFO 2123 --- [ol-5-thread-130] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:36:22.640 INFO 2123 --- [ol-5-thread-130] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:36:23.407 INFO 2123 --- [ol-5-thread-130] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:36:24.129 INFO 2123 --- [ol-5-thread-130] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:36:24.979 INFO 2123 --- [ol-5-thread-130] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:36:25.720 INFO 2123 --- [ol-5-thread-130] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:36:27.252 INFO 2123 --- [ol-5-thread-130] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:36:28.008 INFO 2123 --- [ol-5-thread-130] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:36:29.529 INFO 2123 --- [ol-5-thread-130] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:36:30.289 INFO 2123 --- [ol-5-thread-130] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:36:31.049 INFO 2123 --- [ol-5-thread-130] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:36:31.836 INFO 2123 --- [ol-5-thread-130] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:36:33.220 INFO 2123 --- [ol-5-thread-130] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:36:34.778 INFO 2123 --- [ol-5-thread-130] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:36:35.485 INFO 2123 --- [ol-5-thread-130] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:36:36.889 INFO 2123 --- [ol-5-thread-130] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:36:37.779 INFO 2123 --- [ol-5-thread-130] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:36:38.535 INFO 2123 --- [ol-5-thread-130] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:36:39.211 INFO 2123 --- [ol-5-thread-130] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:36:39.871 INFO 2123 --- [ol-5-thread-130] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:36:41.943 INFO 2123 --- [ol-5-thread-130] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:36:43.414 INFO 2123 --- [ol-5-thread-130] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:36:45.622 INFO 2123 --- [ol-5-thread-130] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:36:46.988 INFO 2123 --- [ol-5-thread-130] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:36:49.140 INFO 2123 --- [ol-5-thread-130] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:36:51.650 INFO 2123 --- [ol-5-thread-130] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:36:53.037 INFO 2123 --- [ol-5-thread-130] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:36:53.711 INFO 2123 --- [ol-5-thread-130] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:36:54.431 INFO 2123 --- [ol-5-thread-130] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:36:55.396 INFO 2123 --- [ol-5-thread-130] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:36:56.439 INFO 2123 --- [ol-5-thread-130] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:36:57.353 INFO 2123 --- [ol-5-thread-130] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:36:59.347 INFO 2123 --- [ol-5-thread-130] o.ihtsdo.otf.snomedboot.ReleaseImporter : 5112181 relationships read from sct2_Relationship_Full_INT_20180731.txt
2018-11-22 07:36:59.347 INFO 2123 --- [ol-5-thread-130] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20080731
2018-11-22 07:36:59.347 INFO 2123 --- [ol-5-thread-134] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20080731
2018-11-22 07:36:59.348 INFO 2123 --- [ol-5-thread-130] o.ihtsdo.otf.snomedboot.ReleaseImporter : 11 reference set members read from sct2_sRefset_OWLAxiomFull_INT_20180731.txt
2018-11-22 07:36:59.348 INFO 2123 --- [ol-5-thread-134] o.ihtsdo.otf.snomedboot.ReleaseImporter : 144 reference set members read from der2_ssccRefset_MRCMAttributeRangeFull_INT_20180731.txt
2018-11-22 07:36:59.349 INFO 2123 --- [ol-5-thread-135] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20080731
2018-11-22 07:36:59.349 INFO 2123 --- [ol-5-thread-134] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20080731
2018-11-22 07:36:59.349 INFO 2123 --- [ol-5-thread-130] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20080731
2018-11-22 07:36:59.349 INFO 2123 --- [ol-5-thread-134] o.ihtsdo.otf.snomedboot.ReleaseImporter : 7 reference set members read from sct2_sRefset_OWLOntologyFull_INT_20180731.txt
2018-11-22 07:36:59.349 INFO 2123 --- [ol-5-thread-134] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20080731
2018-11-22 07:36:59.349 INFO 2123 --- [ol-5-thread-134] o.ihtsdo.otf.snomedboot.ReleaseImporter : 3 reference set members read from der2_cRefset_MRCMModuleScopeFull_INT_20180731.txt
2018-11-22 07:36:59.349 INFO 2123 --- [ol-5-thread-136] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20080731
2018-11-22 07:36:59.350 INFO 2123 --- [ol-5-thread-136] o.ihtsdo.otf.snomedboot.ReleaseImporter : 4 reference set members read from der2_ciRefset_DescriptionTypeFull_INT_20180731.txt
2018-11-22 07:36:59.350 INFO 2123 --- [ol-5-thread-134] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20080731
2018-11-22 07:36:59.354 INFO 2123 --- [ol-5-thread-138] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20080731
2018-11-22 07:36:59.354 INFO 2123 --- [ol-5-thread-136] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20080731
2018-11-22 07:36:59.355 INFO 2123 --- [ol-5-thread-138] o.ihtsdo.otf.snomedboot.ReleaseImporter : 154 reference set members read from der2_cissccRefset_MRCMAttributeDomainFull_INT_20180731.txt
2018-11-22 07:36:59.358 INFO 2123 --- [ol-5-thread-138] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20080731
2018-11-22 07:36:59.360 INFO 2123 --- [ol-5-thread-136] o.ihtsdo.otf.snomedboot.ReleaseImporter : 36 reference set members read from der2_sssssssRefset_MRCMDomainFull_INT_20180731.txt
2018-11-22 07:36:59.366 INFO 2123 --- [ol-5-thread-139] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20080731
2018-11-22 07:36:59.366 INFO 2123 --- [ol-5-thread-137] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20080731
2018-11-22 07:36:59.374 INFO 2123 --- [ol-5-thread-140] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20080731
2018-11-22 07:36:59.374 INFO 2123 --- [ol-5-thread-136] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20080731
2018-11-22 07:36:59.375 INFO 2123 --- [ol-5-thread-140] o.ihtsdo.otf.snomedboot.ReleaseImporter : 56 reference set members read from der2_ssRefset_ModuleDependencyFull_INT_20180731.txt
2018-11-22 07:36:59.382 INFO 2123 --- [ol-5-thread-135] o.ihtsdo.otf.snomedboot.ReleaseImporter : 167 reference set members read from der2_cciRefset_RefsetDescriptorFull_INT_20180731.txt
2018-11-22 07:36:59.458 INFO 2123 --- [ol-5-thread-130] o.ihtsdo.otf.snomedboot.ReleaseImporter : 19870 reference set members read from der2_Refset_SimpleFull_INT_20180731.txt
2018-11-22 07:36:59.564 INFO 2123 --- [ol-5-thread-139] i.k.elasticvc.api.ComponentService : Saving batch of 3082 Concepts
2018-11-22 07:36:59.902 INFO 2123 --- [ol-5-thread-139] i.k.elasticvc.api.ComponentService : Saving batch of 93 Descriptions
2018-11-22 07:37:00.162 INFO 2123 --- [ol-5-thread-139] i.k.elasticvc.api.ComponentService : Saving batch of 3662 Relationships
2018-11-22 07:37:00.272 INFO 2123 --- [ol-5-thread-138] o.ihtsdo.otf.snomedboot.ReleaseImporter : 224459 reference set members read from der2_iisssccRefset_ExtendedMapFull_INT_20180731.txt
2018-11-22 07:37:00.992 INFO 2123 --- [ol-5-thread-139] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:37:02.223 INFO 2123 --- [ol-5-thread-139] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:37:03.534 INFO 2123 --- [ol-5-thread-139] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:37:05.196 INFO 2123 --- [ol-5-thread-139] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:37:06.835 INFO 2123 --- [ol-5-thread-139] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:37:08.262 INFO 2123 --- [ol-5-thread-139] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:37:09.564 INFO 2123 --- [ol-5-thread-137] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:37:11.102 INFO 2123 --- [ol-5-thread-137] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:37:12.731 INFO 2123 --- [ol-5-thread-139] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:37:13.729 INFO 2123 --- [ol-5-thread-134] o.ihtsdo.otf.snomedboot.ReleaseImporter : 167899 reference set members read from der2_cRefset_AssociationFull_INT_20180731.txt
2018-11-22 07:37:14.114 INFO 2123 --- [ol-5-thread-139] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:37:15.392 INFO 2123 --- [ol-5-thread-137] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:37:16.894 INFO 2123 --- [ol-5-thread-139] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:37:18.579 INFO 2123 --- [ol-5-thread-136] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:37:22.874 INFO 2123 --- [ol-5-thread-137] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:37:25.392 INFO 2123 --- [ol-5-thread-137] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:37:29.135 INFO 2123 --- [ol-5-thread-139] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:37:33.859 INFO 2123 --- [ol-5-thread-139] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:37:38.662 INFO 2123 --- [ol-5-thread-139] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:37:43.130 INFO 2123 --- [ol-5-thread-136] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:37:46.933 INFO 2123 --- [ol-5-thread-139] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:37:52.823 INFO 2123 --- [ol-5-thread-137] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:37:55.118 INFO 2123 --- [ol-5-thread-136] o.ihtsdo.otf.snomedboot.ReleaseImporter : 484195 reference set members read from der2_sRefset_SimpleMapFull_INT_20180731.txt
2018-11-22 07:37:55.765 INFO 2123 --- [ol-5-thread-139] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:37:59.162 INFO 2123 --- [ol-5-thread-139] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:38:01.014 INFO 2123 --- [ol-5-thread-139] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:38:04.476 INFO 2123 --- [ol-5-thread-139] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:38:07.979 INFO 2123 --- [ol-5-thread-139] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:38:12.515 INFO 2123 --- [ol-5-thread-139] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:38:18.333 INFO 2123 --- [ol-5-thread-139] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:38:23.168 INFO 2123 --- [ol-5-thread-137] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:38:27.620 INFO 2123 --- [ol-5-thread-139] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:38:32.880 INFO 2123 --- [ol-5-thread-137] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:38:38.386 INFO 2123 --- [ol-5-thread-139] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:38:42.599 INFO 2123 --- [ol-5-thread-139] o.ihtsdo.otf.snomedboot.ReleaseImporter : 665802 reference set members read from der2_cRefset_AttributeValueFull_INT_20180731.txt
2018-11-22 07:38:43.833 INFO 2123 --- [ol-5-thread-137] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:38:50.984 INFO 2123 --- [ol-5-thread-137] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:38:54.767 INFO 2123 --- [ol-5-thread-137] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:38:56.418 INFO 2123 --- [ol-5-thread-137] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:38:57.780 INFO 2123 --- [ol-5-thread-137] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:38:59.099 INFO 2123 --- [ol-5-thread-137] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:39:00.584 INFO 2123 --- [ol-5-thread-137] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:39:02.127 INFO 2123 --- [ol-5-thread-137] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:39:03.822 INFO 2123 --- [ol-5-thread-137] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:39:05.692 INFO 2123 --- [ol-5-thread-137] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:39:07.413 INFO 2123 --- [ol-5-thread-137] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:39:09.019 INFO 2123 --- [ol-5-thread-137] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:39:12.050 INFO 2123 --- [ol-5-thread-137] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:39:15.200 INFO 2123 --- [ol-5-thread-137] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:39:18.548 INFO 2123 --- [ol-5-thread-137] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:39:22.139 INFO 2123 --- [ol-5-thread-137] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:39:26.514 INFO 2123 --- [ol-5-thread-137] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:39:30.924 INFO 2123 --- [ol-5-thread-137] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:39:36.040 INFO 2123 --- [ol-5-thread-137] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:39:40.659 INFO 2123 --- [ol-5-thread-137] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:39:46.075 INFO 2123 --- [ol-5-thread-137] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:39:52.265 INFO 2123 --- [ol-5-thread-137] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:39:55.725 INFO 2123 --- [ol-5-thread-137] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:39:56.982 INFO 2123 --- [ol-5-thread-137] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:39:58.297 INFO 2123 --- [ol-5-thread-137] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:40:01.383 INFO 2123 --- [ol-5-thread-137] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:40:05.151 INFO 2123 --- [ol-5-thread-137] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:40:07.563 INFO 2123 --- [ol-5-thread-137] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:40:11.143 INFO 2123 --- [ol-5-thread-137] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:40:14.733 INFO 2123 --- [ol-5-thread-137] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:40:19.049 INFO 2123 --- [ol-5-thread-137] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:40:22.708 INFO 2123 --- [ol-5-thread-137] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:40:27.242 INFO 2123 --- [ol-5-thread-137] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:40:31.644 INFO 2123 --- [ol-5-thread-137] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:40:37.032 INFO 2123 --- [ol-5-thread-137] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:40:43.337 INFO 2123 --- [ol-5-thread-137] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:40:48.809 INFO 2123 --- [ol-5-thread-137] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:40:54.956 INFO 2123 --- [ol-5-thread-137] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:40:56.939 INFO 2123 --- [ol-5-thread-137] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:40:58.044 INFO 2123 --- [ol-5-thread-137] o.ihtsdo.otf.snomedboot.ReleaseImporter : 3207060 reference set members read from der2_cRefset_LanguageFull-en_INT_20180731.txt
2018-11-22 07:40:58.182 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 1207 ReferenceSetMembers
2018-11-22 07:40:58.629 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: started
2018-11-22 07:40:58.629 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: get branch criteria took 0.0 seconds
2018-11-22 07:41:06.871 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed is-a relationships. took 8.242 seconds
2018-11-22 07:41:06.872 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed axiom is-a fragments. took 0.001 seconds
2018-11-22 07:41:06.872 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : Performing incremental update of stated semantic index
2018-11-22 07:41:07.720 WARN 2123 --- [/O dispatcher 3] org.elasticsearch.client.RestClient : request [GET http://localhost:9200/es-query/query-concept/_search?typed_keys=true&ignore_unavailable=false&expand_wildcards=open&allow_no_indices=true&scroll=60000ms&search_type=query_then_fetch&batched_reduce_size=512] returned 1 warnings: [299 Elasticsearch-6.5.1-8c58350 "Deprecated: the number of terms [315550] used in the Terms Query request has exceeded the allowed maximum of [65536]. This maximum can be set by changing the [index.max_terms_count] index level setting." "Thu, 22 Nov 2018 07:41:07 GMT"]
2018-11-22 07:41:08.142 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect existingAncestors from QueryConcept. took 1.27 seconds
2018-11-22 07:41:09.478 WARN 2123 --- [/O dispatcher 3] org.elasticsearch.client.RestClient : request [GET http://localhost:9200/es-query/query-concept/_search?typed_keys=true&ignore_unavailable=false&expand_wildcards=open&allow_no_indices=true&scroll=60000ms&search_type=query_then_fetch&batched_reduce_size=512] returned 1 warnings: [299 Elasticsearch-6.5.1-8c58350 "Deprecated: the number of terms [315549] used in the Terms Query request has exceeded the allowed maximum of [65536]. This maximum can be set by changing the [index.max_terms_count] index level setting." "Thu, 22 Nov 2018 07:41:08 GMT"]
2018-11-22 07:41:09.478 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect existingDescendants from QueryConcept. took 1.336 seconds
2018-11-22 07:41:18.507 WARN 2123 --- [/O dispatcher 3] org.elasticsearch.client.RestClient : request [GET http://localhost:9200/es-rel/relationship/_search?typed_keys=true&ignore_unavailable=false&expand_wildcards=open&allow_no_indices=true&scroll=60000ms&search_type=query_then_fetch&batched_reduce_size=512] returned 1 warnings: [299 Elasticsearch-6.5.1-8c58350 "Deprecated: the number of terms [315550] used in the Terms Query request has exceeded the allowed maximum of [65536]. This maximum can be set by changing the [index.max_terms_count] index level setting." "Thu, 22 Nov 2018 07:41:09 GMT"]
2018-11-22 07:41:18.507 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Build existing nodes from Relationships. took 9.029 seconds
2018-11-22 07:41:29.040 WARN 2123 --- [/O dispatcher 3] org.elasticsearch.client.RestClient : request [GET http://localhost:9200/es-member/member/_search?typed_keys=true&ignore_unavailable=false&expand_wildcards=open&allow_no_indices=true&scroll=60000ms&search_type=query_then_fetch&batched_reduce_size=512] returned 1 warnings: [299 Elasticsearch-6.5.1-8c58350 "Deprecated: the number of terms [315550] used in the Terms Query request has exceeded the allowed maximum of [65536]. This maximum can be set by changing the [index.max_terms_count] index level setting." "Thu, 22 Nov 2018 07:41:19 GMT"]
2018-11-22 07:41:29.041 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Build existing nodes from Axioms. took 10.534 seconds
2018-11-22 07:41:29.041 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : 0 existing nodes loaded.
2018-11-22 07:41:57.857 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Update graph using changed relationships. took 28.816 seconds
2018-11-22 07:41:57.858 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Update graph using changed axioms. took 0.001 seconds
2018-11-22 07:42:02.051 WARN 2123 --- [/O dispatcher 3] org.elasticsearch.client.RestClient : request [GET http://localhost:9200/es-concept/concept/_search?typed_keys=true&ignore_unavailable=false&expand_wildcards=open&allow_no_indices=true&search_type=dfs_query_then_fetch&batched_reduce_size=512] returned 1 warnings: [299 Elasticsearch-6.5.1-8c58350 "Deprecated: the number of terms [315550] used in the Terms Query request has exceeded the allowed maximum of [65536]. This maximum can be set by changing the [index.max_terms_count] index level setting." "Thu, 22 Nov 2018 07:41:57 GMT"]
2018-11-22 07:42:06.545 WARN 2123 --- [/O dispatcher 3] org.elasticsearch.client.RestClient : request [GET http://localhost:9200/es-concept/concept/_search?typed_keys=true&ignore_unavailable=false&expand_wildcards=open&allow_no_indices=true&scroll=60000ms&search_type=query_then_fetch&batched_reduce_size=512] returned 1 warnings: [299 Elasticsearch-6.5.1-8c58350 "Deprecated: the number of terms [315550] used in the Terms Query request has exceeded the allowed maximum of [65536]. This maximum can be set by changing the [index.max_terms_count] index level setting." "Thu, 22 Nov 2018 07:42:02 GMT"]
2018-11-22 07:43:27.297 WARN 2123 --- [/O dispatcher 3] org.elasticsearch.client.RestClient : request [GET http://localhost:9200/es-query/query-concept/_search?typed_keys=true&ignore_unavailable=false&expand_wildcards=open&allow_no_indices=true&scroll=60000ms&search_type=query_then_fetch&batched_reduce_size=512] returned 1 warnings: [299 Elasticsearch-6.5.1-8c58350 "Deprecated: the number of terms [315562] used in the Terms Query request has exceeded the allowed maximum of [65536]. This maximum can be set by changing the [index.max_terms_count] index level setting." "Thu, 22 Nov 2018 07:43:21 GMT"]
2018-11-22 07:43:31.446 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect existingDescendants from QueryConcept. took 93.588 seconds
2018-11-22 07:43:33.260 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:43:34.124 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:43:35.107 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:43:36.018 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:43:37.072 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:43:38.386 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:43:39.859 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:43:41.209 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:43:42.339 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:43:43.567 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:43:44.807 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:43:45.856 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:43:46.903 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:43:48.024 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:43:49.384 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:43:50.716 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:43:51.755 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:43:52.791 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:43:54.005 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:43:55.494 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:43:56.808 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:43:57.887 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:43:58.990 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:44:00.315 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:44:01.415 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:44:02.340 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:44:03.485 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:44:04.855 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:44:06.190 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:44:07.287 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:44:08.424 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:44:09.508 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5550 QueryConcepts
2018-11-22 07:44:10.401 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Save updated QueryConcepts took 38.955 seconds
2018-11-22 07:44:10.401 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: total took 191.772 seconds
2018-11-22 07:44:10.401 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: started
2018-11-22 07:44:10.401 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: get branch criteria took 0.0 seconds
2018-11-22 07:44:11.300 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect changed is-a relationships. took 0.899 seconds
2018-11-22 07:44:11.300 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : Performing incremental update of inferred semantic index
2018-11-22 07:44:12.766 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect existingAncestors from QueryConcept. took 1.466 seconds
2018-11-22 07:44:16.662 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect existingDescendants from QueryConcept. took 3.896 seconds
2018-11-22 07:44:18.793 WARN 2123 --- [/O dispatcher 3] org.elasticsearch.client.RestClient : request [GET http://localhost:9200/es-rel/relationship/_search?typed_keys=true&ignore_unavailable=false&expand_wildcards=open&allow_no_indices=true&scroll=60000ms&search_type=query_then_fetch&batched_reduce_size=512] returned 1 warnings: [299 Elasticsearch-6.5.1-8c58350 "Deprecated: the number of terms [87702] used in the Terms Query request has exceeded the allowed maximum of [65536]. This maximum can be set by changing the [index.max_terms_count] index level setting." "Thu, 22 Nov 2018 07:44:16 GMT"]
2018-11-22 07:44:40.501 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Build existing nodes from Relationships. took 23.839 seconds
2018-11-22 07:44:40.501 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : 86283 existing nodes loaded.
2018-11-22 07:44:58.143 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Update graph using changed relationships. took 17.642 seconds
2018-11-22 07:44:59.572 WARN 2123 --- [/O dispatcher 3] org.elasticsearch.client.RestClient : request [GET http://localhost:9200/es-concept/concept/_search?typed_keys=true&ignore_unavailable=false&expand_wildcards=open&allow_no_indices=true&search_type=dfs_query_then_fetch&batched_reduce_size=512] returned 1 warnings: [299 Elasticsearch-6.5.1-8c58350 "Deprecated: the number of terms [105484] used in the Terms Query request has exceeded the allowed maximum of [65536]. This maximum can be set by changing the [index.max_terms_count] index level setting." "Thu, 22 Nov 2018 07:44:58 GMT"]
2018-11-22 07:45:00.966 WARN 2123 --- [/O dispatcher 3] org.elasticsearch.client.RestClient : request [GET http://localhost:9200/es-concept/concept/_search?typed_keys=true&ignore_unavailable=false&expand_wildcards=open&allow_no_indices=true&scroll=60000ms&search_type=query_then_fetch&batched_reduce_size=512] returned 1 warnings: [299 Elasticsearch-6.5.1-8c58350 "Deprecated: the number of terms [105484] used in the Terms Query request has exceeded the allowed maximum of [65536]. This maximum can be set by changing the [index.max_terms_count] index level setting." "Thu, 22 Nov 2018 07:44:59 GMT"]
2018-11-22 07:45:14.384 WARN 2123 --- [/O dispatcher 3] org.elasticsearch.client.RestClient : request [GET http://localhost:9200/es-query/query-concept/_search?typed_keys=true&ignore_unavailable=false&expand_wildcards=open&allow_no_indices=true&scroll=60000ms&search_type=query_then_fetch&batched_reduce_size=512] returned 1 warnings: [299 Elasticsearch-6.5.1-8c58350 "Deprecated: the number of terms [121371] used in the Terms Query request has exceeded the allowed maximum of [65536]. This maximum can be set by changing the [index.max_terms_count] index level setting." "Thu, 22 Nov 2018 07:45:11 GMT"]
2018-11-22 07:45:42.035 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect existingDescendants from QueryConcept. took 43.892 seconds
2018-11-22 07:45:42.112 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:45:49.898 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:45:57.081 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:46:00.660 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:46:03.786 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:46:08.855 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:46:11.795 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:46:15.770 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:46:19.498 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:46:23.961 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:46:30.470 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:46:37.911 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:46:47.606 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 1207 QueryConcepts
2018-11-22 07:46:52.638 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Save updated QueryConcepts took 70.603 seconds
2018-11-22 07:46:52.638 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: total took 162.237 seconds
2018-11-22 07:46:52.651 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Completed commit on MAIN at 1542871914594
2018-11-22 07:46:52.656 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Creating Code System version - Code System: SNOMEDCT, Version: 2008-07-31, Release Branch: MAIN/2008-07-31
2018-11-22 07:46:52.656 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Versioning content...
2018-11-22 07:46:52.668 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Open commit on MAIN at 1542872812668
2018-11-22 07:46:52.730 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: started
2018-11-22 07:46:52.730 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: get branch criteria took 0.0 seconds
2018-11-22 07:46:53.510 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed is-a relationships. took 0.78 seconds
2018-11-22 07:46:53.514 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed axiom is-a fragments. took 0.004 seconds
2018-11-22 07:46:53.516 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: started
2018-11-22 07:46:53.516 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: get branch criteria took 0.0 seconds
2018-11-22 07:46:53.519 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect changed is-a relationships. took 0.003 seconds
2018-11-22 07:46:53.533 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Completed commit on MAIN at 1542872812668
2018-11-22 07:46:53.533 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Creating version branch content...
2018-11-22 07:46:53.535 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Creating branch Branch{path=MAIN/2008-07-31, base=1542872812668, head=1542872813533, start=1542872813533, end=null}
2018-11-22 07:46:53.545 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Persisting Code System Version...
2018-11-22 07:46:53.555 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Versioning complete.
2018-11-22 07:46:53.567 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Open commit on MAIN at 1542872813567
2018-11-22 07:46:53.567 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Loading release delta 20090131
2018-11-22 07:46:53.567 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading concepts for release 20090131
2018-11-22 07:46:54.387 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Concepts
2018-11-22 07:46:56.807 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Concepts
2018-11-22 07:46:57.714 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : 581635 concepts read from sct2_Concept_Full_INT_20180731.txt
2018-11-22 07:46:57.715 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : includedReferenceSetPathPatterns: []
2018-11-22 07:46:57.715 INFO 2123 --- [ol-5-thread-141] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading relationships for release 20090131
2018-11-22 07:46:57.723 INFO 2123 --- [ol-5-thread-142] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading relationships for release 20090131
2018-11-22 07:46:57.723 INFO 2123 --- [ol-5-thread-143] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading descriptions for release 20090131
2018-11-22 07:46:57.734 INFO 2123 --- [ol-5-thread-144] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading descriptions for release 20090131
2018-11-22 07:46:57.793 INFO 2123 --- [ol-5-thread-144] o.ihtsdo.otf.snomedboot.ReleaseImporter : 5151 descriptions read from sct2_TextDefinition_Full-en_INT_20180731.txt
2018-11-22 07:46:58.479 INFO 2123 --- [ol-5-thread-141] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:47:00.629 INFO 2123 --- [ol-5-thread-142] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:47:02.123 INFO 2123 --- [ol-5-thread-143] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 07:47:02.296 INFO 2123 --- [ol-5-thread-141] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:47:04.753 INFO 2123 --- [ol-5-thread-142] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:47:05.089 INFO 2123 --- [ol-5-thread-143] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 07:47:06.956 INFO 2123 --- [ol-5-thread-142] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:47:07.492 INFO 2123 --- [ol-5-thread-143] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 07:47:09.076 INFO 2123 --- [ol-5-thread-142] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:47:09.216 INFO 2123 --- [ol-5-thread-143] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 07:47:11.207 INFO 2123 --- [ol-5-thread-142] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:47:11.269 INFO 2123 --- [ol-5-thread-143] o.ihtsdo.otf.snomedboot.ReleaseImporter : 2513952 descriptions read from sct2_Description_Full-en_INT_20180731.txt
2018-11-22 07:47:13.224 INFO 2123 --- [ol-5-thread-142] o.ihtsdo.otf.snomedboot.ReleaseImporter : 1130957 relationships read from sct2_StatedRelationship_Full_INT_20180731.txt
2018-11-22 07:47:13.547 INFO 2123 --- [ol-5-thread-141] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:47:16.134 INFO 2123 --- [ol-5-thread-141] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:47:18.456 INFO 2123 --- [ol-5-thread-141] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:47:21.229 INFO 2123 --- [ol-5-thread-141] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:47:23.030 INFO 2123 --- [ol-5-thread-141] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:47:24.959 INFO 2123 --- [ol-5-thread-141] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:47:26.662 INFO 2123 --- [ol-5-thread-141] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:47:28.288 INFO 2123 --- [ol-5-thread-141] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:47:30.535 INFO 2123 --- [ol-5-thread-141] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:47:32.067 INFO 2123 --- [ol-5-thread-141] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:47:33.802 INFO 2123 --- [ol-5-thread-141] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:47:36.699 INFO 2123 --- [ol-5-thread-141] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:47:38.224 INFO 2123 --- [ol-5-thread-141] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:47:40.712 INFO 2123 --- [ol-5-thread-141] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:47:42.524 INFO 2123 --- [ol-5-thread-141] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:47:44.165 INFO 2123 --- [ol-5-thread-141] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:47:45.565 INFO 2123 --- [ol-5-thread-141] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:47:47.802 INFO 2123 --- [ol-5-thread-141] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:47:50.391 INFO 2123 --- [ol-5-thread-141] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:47:51.834 INFO 2123 --- [ol-5-thread-141] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:47:54.349 INFO 2123 --- [ol-5-thread-141] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:47:56.193 INFO 2123 --- [ol-5-thread-141] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:47:58.598 INFO 2123 --- [ol-5-thread-141] o.ihtsdo.otf.snomedboot.ReleaseImporter : 5112181 relationships read from sct2_Relationship_Full_INT_20180731.txt
2018-11-22 07:47:58.598 INFO 2123 --- [ol-5-thread-141] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20090131
2018-11-22 07:47:58.598 INFO 2123 --- [ol-5-thread-142] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20090131
2018-11-22 07:47:58.598 INFO 2123 --- [ol-5-thread-143] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20090131
2018-11-22 07:47:58.598 INFO 2123 --- [ol-5-thread-142] o.ihtsdo.otf.snomedboot.ReleaseImporter : 11 reference set members read from sct2_sRefset_OWLAxiomFull_INT_20180731.txt
2018-11-22 07:47:58.598 INFO 2123 --- [ol-5-thread-142] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20090131
2018-11-22 07:47:58.598 INFO 2123 --- [ol-5-thread-143] o.ihtsdo.otf.snomedboot.ReleaseImporter : 167 reference set members read from der2_cciRefset_RefsetDescriptorFull_INT_20180731.txt
2018-11-22 07:47:58.598 INFO 2123 --- [ol-5-thread-143] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20090131
2018-11-22 07:47:58.598 INFO 2123 --- [ol-5-thread-143] o.ihtsdo.otf.snomedboot.ReleaseImporter : 3 reference set members read from der2_cRefset_MRCMModuleScopeFull_INT_20180731.txt
2018-11-22 07:47:58.599 INFO 2123 --- [ol-5-thread-141] o.ihtsdo.otf.snomedboot.ReleaseImporter : 144 reference set members read from der2_ssccRefset_MRCMAttributeRangeFull_INT_20180731.txt
2018-11-22 07:47:58.599 INFO 2123 --- [ol-5-thread-146] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20090131
2018-11-22 07:47:58.599 INFO 2123 --- [ol-5-thread-146] o.ihtsdo.otf.snomedboot.ReleaseImporter : 4 reference set members read from der2_ciRefset_DescriptionTypeFull_INT_20180731.txt
2018-11-22 07:47:58.599 INFO 2123 --- [ol-5-thread-145] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20090131
2018-11-22 07:47:58.599 INFO 2123 --- [ol-5-thread-145] o.ihtsdo.otf.snomedboot.ReleaseImporter : 7 reference set members read from sct2_sRefset_OWLOntologyFull_INT_20180731.txt
2018-11-22 07:47:58.599 INFO 2123 --- [ol-5-thread-141] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20090131
2018-11-22 07:47:58.599 INFO 2123 --- [ol-5-thread-143] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20090131
2018-11-22 07:47:58.599 INFO 2123 --- [ol-5-thread-147] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20090131
2018-11-22 07:47:58.600 INFO 2123 --- [ol-5-thread-141] o.ihtsdo.otf.snomedboot.ReleaseImporter : 154 reference set members read from der2_cissccRefset_MRCMAttributeDomainFull_INT_20180731.txt
2018-11-22 07:47:58.602 INFO 2123 --- [ol-5-thread-146] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20090131
2018-11-22 07:47:58.610 INFO 2123 --- [ol-5-thread-145] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20090131
2018-11-22 07:47:58.612 INFO 2123 --- [ol-5-thread-145] o.ihtsdo.otf.snomedboot.ReleaseImporter : 36 reference set members read from der2_sssssssRefset_MRCMDomainFull_INT_20180731.txt
2018-11-22 07:47:58.614 INFO 2123 --- [ol-5-thread-141] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20090131
2018-11-22 07:47:58.614 INFO 2123 --- [ol-5-thread-145] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20090131
2018-11-22 07:47:58.614 INFO 2123 --- [ol-5-thread-148] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20090131
2018-11-22 07:47:58.615 INFO 2123 --- [ol-5-thread-145] o.ihtsdo.otf.snomedboot.ReleaseImporter : 56 reference set members read from der2_ssRefset_ModuleDependencyFull_INT_20180731.txt
2018-11-22 07:47:58.675 INFO 2123 --- [ol-5-thread-142] o.ihtsdo.otf.snomedboot.ReleaseImporter : 19870 reference set members read from der2_Refset_SimpleFull_INT_20180731.txt
2018-11-22 07:47:58.787 INFO 2123 --- [ol-5-thread-141] i.k.elasticvc.api.ComponentService : Saving batch of 3651 Concepts
2018-11-22 07:47:59.097 INFO 2123 --- [ol-5-thread-141] i.k.elasticvc.api.ComponentService : Saving batch of 2732 Descriptions
2018-11-22 07:47:59.579 INFO 2123 --- [ol-5-thread-148] o.ihtsdo.otf.snomedboot.ReleaseImporter : 224459 reference set members read from der2_iisssccRefset_ExtendedMapFull_INT_20180731.txt
2018-11-22 07:47:59.614 INFO 2123 --- [ol-5-thread-141] i.k.elasticvc.api.ComponentService : Saving batch of 2700 Relationships
2018-11-22 07:48:00.251 INFO 2123 --- [ol-5-thread-141] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:48:01.639 INFO 2123 --- [ol-5-thread-141] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:48:02.808 INFO 2123 --- [ol-5-thread-146] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:48:04.131 INFO 2123 --- [ol-5-thread-143] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:48:05.051 INFO 2123 --- [ol-5-thread-146] o.ihtsdo.otf.snomedboot.ReleaseImporter : 167899 reference set members read from der2_cRefset_AssociationFull_INT_20180731.txt
2018-11-22 07:48:05.412 INFO 2123 --- [ol-5-thread-143] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:48:06.923 INFO 2123 --- [ol-5-thread-143] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:48:08.430 INFO 2123 --- [ol-5-thread-143] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:48:09.750 INFO 2123 --- [ol-5-thread-141] o.ihtsdo.otf.snomedboot.ReleaseImporter : 484195 reference set members read from der2_sRefset_SimpleMapFull_INT_20180731.txt
2018-11-22 07:48:10.014 INFO 2123 --- [ol-5-thread-143] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:48:11.681 INFO 2123 --- [ol-5-thread-143] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:48:13.915 INFO 2123 --- [ol-5-thread-143] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:48:15.154 INFO 2123 --- [ol-5-thread-143] o.ihtsdo.otf.snomedboot.ReleaseImporter : 665802 reference set members read from der2_cRefset_AttributeValueFull_INT_20180731.txt
2018-11-22 07:48:16.502 INFO 2123 --- [ol-5-thread-147] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:48:18.998 INFO 2123 --- [ol-5-thread-147] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:48:21.378 INFO 2123 --- [ol-5-thread-147] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:48:23.779 INFO 2123 --- [ol-5-thread-147] o.ihtsdo.otf.snomedboot.ReleaseImporter : 3207060 reference set members read from der2_cRefset_LanguageFull-en_INT_20180731.txt
2018-11-22 07:48:24.851 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 3929 ReferenceSetMembers
2018-11-22 07:48:26.974 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: started
2018-11-22 07:48:26.974 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: get branch criteria took 0.0 seconds
2018-11-22 07:48:28.988 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed is-a relationships. took 2.014 seconds
2018-11-22 07:48:28.990 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed axiom is-a fragments. took 0.002 seconds
2018-11-22 07:48:28.990 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : Performing incremental update of stated semantic index
2018-11-22 07:48:30.423 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect existingAncestors from QueryConcept. took 1.433 seconds
2018-11-22 07:48:32.421 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect existingDescendants from QueryConcept. took 1.998 seconds
2018-11-22 07:48:42.637 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Build existing nodes from Relationships. took 10.216 seconds
2018-11-22 07:48:44.333 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Build existing nodes from Axioms. took 1.696 seconds
2018-11-22 07:48:44.333 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : 36358 existing nodes loaded.
2018-11-22 07:48:46.929 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Update graph using changed relationships. took 2.596 seconds
2018-11-22 07:48:46.930 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Update graph using changed axioms. took 0.001 seconds
2018-11-22 07:48:55.902 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect existingDescendants from QueryConcept. took 8.972 seconds
2018-11-22 07:48:55.922 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:48:59.825 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:49:03.143 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:49:08.413 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 2558 QueryConcepts
2018-11-22 07:49:09.315 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Save updated QueryConcepts took 13.413 seconds
2018-11-22 07:49:09.315 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: total took 42.341 seconds
2018-11-22 07:49:09.315 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: started
2018-11-22 07:49:09.315 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: get branch criteria took 0.0 seconds
2018-11-22 07:49:10.074 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect changed is-a relationships. took 0.759 seconds
2018-11-22 07:49:10.074 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : Performing incremental update of inferred semantic index
2018-11-22 07:49:11.525 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect existingAncestors from QueryConcept. took 1.451 seconds
2018-11-22 07:49:16.992 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect existingDescendants from QueryConcept. took 5.467 seconds
2018-11-22 07:49:20.916 WARN 2123 --- [/O dispatcher 3] org.elasticsearch.client.RestClient : request [GET http://localhost:9200/es-rel/relationship/_search?typed_keys=true&ignore_unavailable=false&expand_wildcards=open&allow_no_indices=true&scroll=60000ms&search_type=query_then_fetch&batched_reduce_size=512] returned 1 warnings: [299 Elasticsearch-6.5.1-8c58350 "Deprecated: the number of terms [80747] used in the Terms Query request has exceeded the allowed maximum of [65536]. This maximum can be set by changing the [index.max_terms_count] index level setting." "Thu, 22 Nov 2018 07:49:17 GMT"]
2018-11-22 07:49:58.862 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Build existing nodes from Relationships. took 41.87 seconds
2018-11-22 07:49:58.862 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : 80445 existing nodes loaded.
2018-11-22 07:50:03.831 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Update graph using changed relationships. took 4.969 seconds
2018-11-22 07:50:08.187 WARN 2123 --- [/O dispatcher 3] org.elasticsearch.client.RestClient : request [GET http://localhost:9200/es-query/query-concept/_search?typed_keys=true&ignore_unavailable=false&expand_wildcards=open&allow_no_indices=true&scroll=60000ms&search_type=query_then_fetch&batched_reduce_size=512] returned 1 warnings: [299 Elasticsearch-6.5.1-8c58350 "Deprecated: the number of terms [78421] used in the Terms Query request has exceeded the allowed maximum of [65536]. This maximum can be set by changing the [index.max_terms_count] index level setting." "Thu, 22 Nov 2018 07:50:06 GMT"]
2018-11-22 07:50:24.859 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect existingDescendants from QueryConcept. took 21.028 seconds
2018-11-22 07:50:24.897 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:50:31.339 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:50:39.293 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:50:49.534 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:50:58.205 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:51:02.448 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:51:07.640 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:51:15.257 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 8402 QueryConcepts
2018-11-22 07:51:21.083 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Save updated QueryConcepts took 56.224 seconds
2018-11-22 07:51:21.083 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: total took 131.768 seconds
2018-11-22 07:51:21.097 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Completed commit on MAIN at 1542872813567
2018-11-22 07:51:21.101 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Creating Code System version - Code System: SNOMEDCT, Version: 2009-01-31, Release Branch: MAIN/2009-01-31
2018-11-22 07:51:21.101 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Versioning content...
2018-11-22 07:51:21.113 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Open commit on MAIN at 1542873081113
2018-11-22 07:51:21.170 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: started
2018-11-22 07:51:21.170 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: get branch criteria took 0.0 seconds
2018-11-22 07:51:21.173 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed is-a relationships. took 0.003 seconds
2018-11-22 07:51:21.175 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed axiom is-a fragments. took 0.002 seconds
2018-11-22 07:51:21.178 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: started
2018-11-22 07:51:21.178 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: get branch criteria took 0.0 seconds
2018-11-22 07:51:21.180 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect changed is-a relationships. took 0.002 seconds
2018-11-22 07:51:21.193 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Completed commit on MAIN at 1542873081113
2018-11-22 07:51:21.193 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Creating version branch content...
2018-11-22 07:51:21.195 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Creating branch Branch{path=MAIN/2009-01-31, base=1542873081113, head=1542873081193, start=1542873081193, end=null}
2018-11-22 07:51:21.204 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Persisting Code System Version...
2018-11-22 07:51:21.212 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Versioning complete.
2018-11-22 07:51:21.222 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Open commit on MAIN at 1542873081222
2018-11-22 07:51:21.222 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Loading release delta 20090731
2018-11-22 07:51:21.222 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading concepts for release 20090731
2018-11-22 07:51:21.600 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Concepts
2018-11-22 07:51:23.062 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : 581635 concepts read from sct2_Concept_Full_INT_20180731.txt
2018-11-22 07:51:23.062 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : includedReferenceSetPathPatterns: []
2018-11-22 07:51:23.063 INFO 2123 --- [ol-5-thread-149] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading relationships for release 20090731
2018-11-22 07:51:23.066 INFO 2123 --- [ol-5-thread-150] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading relationships for release 20090731
2018-11-22 07:51:23.066 INFO 2123 --- [ol-5-thread-151] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading descriptions for release 20090731
2018-11-22 07:51:23.067 INFO 2123 --- [ol-5-thread-152] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading descriptions for release 20090731
2018-11-22 07:51:23.102 INFO 2123 --- [ol-5-thread-152] o.ihtsdo.otf.snomedboot.ReleaseImporter : 5151 descriptions read from sct2_TextDefinition_Full-en_INT_20180731.txt
2018-11-22 07:51:23.756 INFO 2123 --- [ol-5-thread-150] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:51:27.083 INFO 2123 --- [ol-5-thread-149] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:51:29.629 INFO 2123 --- [ol-5-thread-149] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:51:30.576 INFO 2123 --- [ol-5-thread-151] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 07:51:31.972 INFO 2123 --- [ol-5-thread-150] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:51:34.265 INFO 2123 --- [ol-5-thread-151] o.ihtsdo.otf.snomedboot.ReleaseImporter : 2513952 descriptions read from sct2_Description_Full-en_INT_20180731.txt
2018-11-22 07:51:35.108 INFO 2123 --- [ol-5-thread-150] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:51:38.724 INFO 2123 --- [ol-5-thread-150] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:51:40.597 INFO 2123 --- [ol-5-thread-150] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:51:45.101 INFO 2123 --- [ol-5-thread-150] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:51:50.071 INFO 2123 --- [ol-5-thread-149] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:51:50.872 INFO 2123 --- [ol-5-thread-150] o.ihtsdo.otf.snomedboot.ReleaseImporter : 1130957 relationships read from sct2_StatedRelationship_Full_INT_20180731.txt
2018-11-22 07:51:55.652 INFO 2123 --- [ol-5-thread-149] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:51:59.807 INFO 2123 --- [ol-5-thread-149] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:52:02.187 INFO 2123 --- [ol-5-thread-149] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:52:04.175 INFO 2123 --- [ol-5-thread-149] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:52:06.018 INFO 2123 --- [ol-5-thread-149] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:52:07.808 INFO 2123 --- [ol-5-thread-149] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:52:09.811 INFO 2123 --- [ol-5-thread-149] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:52:11.347 INFO 2123 --- [ol-5-thread-149] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:52:12.698 INFO 2123 --- [ol-5-thread-149] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:52:14.216 INFO 2123 --- [ol-5-thread-149] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:52:15.603 INFO 2123 --- [ol-5-thread-149] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:52:17.336 INFO 2123 --- [ol-5-thread-149] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:52:18.782 INFO 2123 --- [ol-5-thread-149] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:52:20.357 INFO 2123 --- [ol-5-thread-149] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:52:21.961 INFO 2123 --- [ol-5-thread-149] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:52:23.388 INFO 2123 --- [ol-5-thread-149] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:52:24.632 INFO 2123 --- [ol-5-thread-149] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:52:25.411 INFO 2123 --- [ol-5-thread-149] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:52:26.076 INFO 2123 --- [ol-5-thread-149] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:52:26.888 INFO 2123 --- [ol-5-thread-149] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:52:27.769 INFO 2123 --- [ol-5-thread-149] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:52:28.503 INFO 2123 --- [ol-5-thread-149] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:52:29.259 INFO 2123 --- [ol-5-thread-149] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:52:30.096 INFO 2123 --- [ol-5-thread-149] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:52:30.968 INFO 2123 --- [ol-5-thread-149] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:52:32.603 INFO 2123 --- [ol-5-thread-149] o.ihtsdo.otf.snomedboot.ReleaseImporter : 5112181 relationships read from sct2_Relationship_Full_INT_20180731.txt
2018-11-22 07:52:32.603 INFO 2123 --- [ol-5-thread-149] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20090731
2018-11-22 07:52:32.603 INFO 2123 --- [ol-5-thread-151] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20090731
2018-11-22 07:52:32.603 INFO 2123 --- [ol-5-thread-150] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20090731
2018-11-22 07:52:32.603 INFO 2123 --- [ol-5-thread-150] o.ihtsdo.otf.snomedboot.ReleaseImporter : 11 reference set members read from sct2_sRefset_OWLAxiomFull_INT_20180731.txt
2018-11-22 07:52:32.604 INFO 2123 --- [ol-5-thread-151] o.ihtsdo.otf.snomedboot.ReleaseImporter : 167 reference set members read from der2_cciRefset_RefsetDescriptorFull_INT_20180731.txt
2018-11-22 07:52:32.604 INFO 2123 --- [ol-5-thread-149] o.ihtsdo.otf.snomedboot.ReleaseImporter : 144 reference set members read from der2_ssccRefset_MRCMAttributeRangeFull_INT_20180731.txt
2018-11-22 07:52:32.604 INFO 2123 --- [ol-5-thread-151] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20090731
2018-11-22 07:52:32.604 INFO 2123 --- [ol-5-thread-150] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20090731
2018-11-22 07:52:32.604 INFO 2123 --- [ol-5-thread-151] o.ihtsdo.otf.snomedboot.ReleaseImporter : 4 reference set members read from der2_ciRefset_DescriptionTypeFull_INT_20180731.txt
2018-11-22 07:52:32.604 INFO 2123 --- [ol-5-thread-150] o.ihtsdo.otf.snomedboot.ReleaseImporter : 3 reference set members read from der2_cRefset_MRCMModuleScopeFull_INT_20180731.txt
2018-11-22 07:52:32.604 INFO 2123 --- [ol-5-thread-149] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20090731
2018-11-22 07:52:32.604 INFO 2123 --- [ol-5-thread-150] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20090731
2018-11-22 07:52:32.604 INFO 2123 --- [ol-5-thread-151] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20090731
2018-11-22 07:52:32.604 INFO 2123 --- [ol-5-thread-153] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20090731
2018-11-22 07:52:32.606 INFO 2123 --- [ol-5-thread-153] o.ihtsdo.otf.snomedboot.ReleaseImporter : 7 reference set members read from sct2_sRefset_OWLOntologyFull_INT_20180731.txt
2018-11-22 07:52:32.606 INFO 2123 --- [ol-5-thread-150] o.ihtsdo.otf.snomedboot.ReleaseImporter : 36 reference set members read from der2_sssssssRefset_MRCMDomainFull_INT_20180731.txt
2018-11-22 07:52:32.606 INFO 2123 --- [ol-5-thread-153] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20090731
2018-11-22 07:52:32.607 INFO 2123 --- [ol-5-thread-150] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20090731
2018-11-22 07:52:32.614 INFO 2123 --- [ol-5-thread-155] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20090731
2018-11-22 07:52:32.614 INFO 2123 --- [ol-5-thread-154] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20090731
2018-11-22 07:52:32.623 INFO 2123 --- [ol-5-thread-155] o.ihtsdo.otf.snomedboot.ReleaseImporter : 154 reference set members read from der2_cissccRefset_MRCMAttributeDomainFull_INT_20180731.txt
2018-11-22 07:52:32.630 INFO 2123 --- [ol-5-thread-155] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20090731
2018-11-22 07:52:32.636 INFO 2123 --- [ol-5-thread-156] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20090731
2018-11-22 07:52:32.636 INFO 2123 --- [ol-5-thread-156] o.ihtsdo.otf.snomedboot.ReleaseImporter : 56 reference set members read from der2_ssRefset_ModuleDependencyFull_INT_20180731.txt
2018-11-22 07:52:32.647 INFO 2123 --- [ol-5-thread-149] o.ihtsdo.otf.snomedboot.ReleaseImporter : 19870 reference set members read from der2_Refset_SimpleFull_INT_20180731.txt
2018-11-22 07:52:32.866 INFO 2123 --- [ol-5-thread-151] i.k.elasticvc.api.ComponentService : Saving batch of 3638 Concepts
2018-11-22 07:52:33.511 INFO 2123 --- [ol-5-thread-151] i.k.elasticvc.api.ComponentService : Saving batch of 3432 Descriptions
2018-11-22 07:52:33.573 INFO 2123 --- [ol-5-thread-153] o.ihtsdo.otf.snomedboot.ReleaseImporter : 224459 reference set members read from der2_iisssccRefset_ExtendedMapFull_INT_20180731.txt
2018-11-22 07:52:33.891 INFO 2123 --- [ol-5-thread-151] i.k.elasticvc.api.ComponentService : Saving batch of 1203 Relationships
2018-11-22 07:52:34.445 INFO 2123 --- [ol-5-thread-151] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:52:35.430 INFO 2123 --- [ol-5-thread-151] o.ihtsdo.otf.snomedboot.ReleaseImporter : 167899 reference set members read from der2_cRefset_AssociationFull_INT_20180731.txt
2018-11-22 07:52:35.618 INFO 2123 --- [ol-5-thread-150] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:52:37.429 INFO 2123 --- [ol-5-thread-150] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:52:39.185 INFO 2123 --- [ol-5-thread-150] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:52:40.860 INFO 2123 --- [ol-5-thread-155] o.ihtsdo.otf.snomedboot.ReleaseImporter : 484195 reference set members read from der2_sRefset_SimpleMapFull_INT_20180731.txt
2018-11-22 07:52:41.047 INFO 2123 --- [ol-5-thread-150] o.ihtsdo.otf.snomedboot.ReleaseImporter : 665802 reference set members read from der2_cRefset_AttributeValueFull_INT_20180731.txt
2018-11-22 07:52:42.185 INFO 2123 --- [ol-5-thread-154] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:52:45.506 INFO 2123 --- [ol-5-thread-154] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:52:48.843 INFO 2123 --- [ol-5-thread-154] o.ihtsdo.otf.snomedboot.ReleaseImporter : 3207060 reference set members read from der2_cRefset_LanguageFull-en_INT_20180731.txt
2018-11-22 07:52:49.058 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 3513 ReferenceSetMembers
2018-11-22 07:52:51.296 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: started
2018-11-22 07:52:51.296 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: get branch criteria took 0.0 seconds
2018-11-22 07:52:53.263 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed is-a relationships. took 1.967 seconds
2018-11-22 07:52:53.264 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed axiom is-a fragments. took 0.001 seconds
2018-11-22 07:52:53.264 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : Performing incremental update of stated semantic index
2018-11-22 07:52:54.441 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect existingAncestors from QueryConcept. took 1.177 seconds
2018-11-22 07:53:00.313 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect existingDescendants from QueryConcept. took 5.872 seconds
2018-11-22 07:53:02.432 WARN 2123 --- [/O dispatcher 1] org.elasticsearch.client.RestClient : request [GET http://localhost:9200/es-rel/relationship/_search?typed_keys=true&ignore_unavailable=false&expand_wildcards=open&allow_no_indices=true&scroll=60000ms&search_type=query_then_fetch&batched_reduce_size=512] returned 1 warnings: [299 Elasticsearch-6.5.1-8c58350 "Deprecated: the number of terms [95720] used in the Terms Query request has exceeded the allowed maximum of [65536]. This maximum can be set by changing the [index.max_terms_count] index level setting." "Thu, 22 Nov 2018 07:53:00 GMT"]
2018-11-22 07:53:24.280 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Build existing nodes from Relationships. took 23.967 seconds
2018-11-22 07:53:26.188 WARN 2123 --- [/O dispatcher 1] org.elasticsearch.client.RestClient : request [GET http://localhost:9200/es-member/member/_search?typed_keys=true&ignore_unavailable=false&expand_wildcards=open&allow_no_indices=true&scroll=60000ms&search_type=query_then_fetch&batched_reduce_size=512] returned 1 warnings: [299 Elasticsearch-6.5.1-8c58350 "Deprecated: the number of terms [95720] used in the Terms Query request has exceeded the allowed maximum of [65536]. This maximum can be set by changing the [index.max_terms_count] index level setting." "Thu, 22 Nov 2018 07:53:24 GMT"]
2018-11-22 07:53:26.188 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Build existing nodes from Axioms. took 1.908 seconds
2018-11-22 07:53:26.188 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : 96045 existing nodes loaded.
2018-11-22 07:53:27.198 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Update graph using changed relationships. took 1.01 seconds
2018-11-22 07:53:27.203 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Update graph using changed axioms. took 0.005 seconds
2018-11-22 07:53:30.408 WARN 2123 --- [/O dispatcher 1] org.elasticsearch.client.RestClient : request [GET http://localhost:9200/es-query/query-concept/_search?typed_keys=true&ignore_unavailable=false&expand_wildcards=open&allow_no_indices=true&scroll=60000ms&search_type=query_then_fetch&batched_reduce_size=512] returned 1 warnings: [299 Elasticsearch-6.5.1-8c58350 "Deprecated: the number of terms [94484] used in the Terms Query request has exceeded the allowed maximum of [65536]. This maximum can be set by changing the [index.max_terms_count] index level setting." "Thu, 22 Nov 2018 07:53:28 GMT"]
2018-11-22 07:53:51.242 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect existingDescendants from QueryConcept. took 24.039 seconds
2018-11-22 07:53:51.261 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:53:58.109 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:54:02.158 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:54:04.917 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:54:08.263 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:54:10.769 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:54:13.530 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:54:16.104 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:54:18.577 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:54:21.544 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 4484 QueryConcepts
2018-11-22 07:54:22.832 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Save updated QueryConcepts took 31.59 seconds
2018-11-22 07:54:22.832 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: total took 91.536 seconds
2018-11-22 07:54:22.832 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: started
2018-11-22 07:54:22.832 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: get branch criteria took 0.0 seconds
2018-11-22 07:54:23.770 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect changed is-a relationships. took 0.938 seconds
2018-11-22 07:54:23.770 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : Performing incremental update of inferred semantic index
2018-11-22 07:54:25.019 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect existingAncestors from QueryConcept. took 1.249 seconds
2018-11-22 07:54:32.483 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect existingDescendants from QueryConcept. took 7.464 seconds
2018-11-22 07:54:35.265 WARN 2123 --- [/O dispatcher 1] org.elasticsearch.client.RestClient : request [GET http://localhost:9200/es-rel/relationship/_search?typed_keys=true&ignore_unavailable=false&expand_wildcards=open&allow_no_indices=true&scroll=60000ms&search_type=query_then_fetch&batched_reduce_size=512] returned 1 warnings: [299 Elasticsearch-6.5.1-8c58350 "Deprecated: the number of terms [120149] used in the Terms Query request has exceeded the allowed maximum of [65536]. This maximum can be set by changing the [index.max_terms_count] index level setting." "Thu, 22 Nov 2018 07:54:32 GMT"]
2018-11-22 07:55:15.570 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Build existing nodes from Relationships. took 43.087 seconds
2018-11-22 07:55:15.570 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : 122559 existing nodes loaded.
2018-11-22 07:55:21.487 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Update graph using changed relationships. took 5.917 seconds
2018-11-22 07:55:28.053 WARN 2123 --- [/O dispatcher 1] org.elasticsearch.client.RestClient : request [GET http://localhost:9200/es-query/query-concept/_search?typed_keys=true&ignore_unavailable=false&expand_wildcards=open&allow_no_indices=true&scroll=60000ms&search_type=query_then_fetch&batched_reduce_size=512] returned 1 warnings: [299 Elasticsearch-6.5.1-8c58350 "Deprecated: the number of terms [119531] used in the Terms Query request has exceeded the allowed maximum of [65536]. This maximum can be set by changing the [index.max_terms_count] index level setting." "Thu, 22 Nov 2018 07:55:24 GMT"]
2018-11-22 07:56:02.453 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect existingDescendants from QueryConcept. took 40.966 seconds
2018-11-22 07:56:02.484 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:56:06.389 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:56:09.773 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:56:13.508 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:56:16.496 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:56:20.149 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:56:23.797 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:56:27.426 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:56:33.085 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:56:37.407 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:56:44.212 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:56:54.276 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 9473 QueryConcepts
2018-11-22 07:57:02.067 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Save updated QueryConcepts took 59.614 seconds
2018-11-22 07:57:02.067 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: total took 159.235 seconds
2018-11-22 07:57:02.082 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Completed commit on MAIN at 1542873081222
2018-11-22 07:57:02.086 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Creating Code System version - Code System: SNOMEDCT, Version: 2009-07-31, Release Branch: MAIN/2009-07-31
2018-11-22 07:57:02.086 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Versioning content...
2018-11-22 07:57:02.095 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Open commit on MAIN at 1542873422095
2018-11-22 07:57:02.137 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: started
2018-11-22 07:57:02.137 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: get branch criteria took 0.0 seconds
2018-11-22 07:57:02.143 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed is-a relationships. took 0.006 seconds
2018-11-22 07:57:02.145 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed axiom is-a fragments. took 0.002 seconds
2018-11-22 07:57:02.147 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: started
2018-11-22 07:57:02.147 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: get branch criteria took 0.0 seconds
2018-11-22 07:57:02.150 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect changed is-a relationships. took 0.003 seconds
2018-11-22 07:57:02.163 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Completed commit on MAIN at 1542873422095
2018-11-22 07:57:02.163 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Creating version branch content...
2018-11-22 07:57:02.165 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Creating branch Branch{path=MAIN/2009-07-31, base=1542873422095, head=1542873422163, start=1542873422163, end=null}
2018-11-22 07:57:02.173 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Persisting Code System Version...
2018-11-22 07:57:02.181 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Versioning complete.
2018-11-22 07:57:02.190 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Open commit on MAIN at 1542873422190
2018-11-22 07:57:02.190 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Loading release delta 20100131
2018-11-22 07:57:02.190 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading concepts for release 20100131
2018-11-22 07:57:02.440 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Concepts
2018-11-22 07:57:04.196 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Concepts
2018-11-22 07:57:05.231 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Concepts
2018-11-22 07:57:06.600 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Concepts
2018-11-22 07:57:07.616 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : 581635 concepts read from sct2_Concept_Full_INT_20180731.txt
2018-11-22 07:57:07.616 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : includedReferenceSetPathPatterns: []
2018-11-22 07:57:07.616 INFO 2123 --- [ol-5-thread-157] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading relationships for release 20100131
2018-11-22 07:57:07.616 INFO 2123 --- [ol-5-thread-158] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading relationships for release 20100131
2018-11-22 07:57:07.626 INFO 2123 --- [ol-5-thread-159] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading descriptions for release 20100131
2018-11-22 07:57:07.658 INFO 2123 --- [ol-5-thread-160] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading descriptions for release 20100131
2018-11-22 07:57:07.725 INFO 2123 --- [ol-5-thread-160] o.ihtsdo.otf.snomedboot.ReleaseImporter : 5151 descriptions read from sct2_TextDefinition_Full-en_INT_20180731.txt
2018-11-22 07:57:09.111 INFO 2123 --- [ol-5-thread-158] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:57:10.731 INFO 2123 --- [ol-5-thread-157] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:57:13.058 INFO 2123 --- [ol-5-thread-157] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:57:14.269 INFO 2123 --- [ol-5-thread-159] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 07:57:15.044 INFO 2123 --- [ol-5-thread-157] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:57:16.691 INFO 2123 --- [ol-5-thread-159] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 07:57:18.154 INFO 2123 --- [ol-5-thread-158] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:57:18.728 INFO 2123 --- [ol-5-thread-159] o.ihtsdo.otf.snomedboot.ReleaseImporter : 2513952 descriptions read from sct2_Description_Full-en_INT_20180731.txt
2018-11-22 07:57:19.873 INFO 2123 --- [ol-5-thread-157] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:57:21.168 INFO 2123 --- [ol-5-thread-158] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:57:22.450 INFO 2123 --- [ol-5-thread-158] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:57:25.041 INFO 2123 --- [ol-5-thread-158] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:57:26.866 INFO 2123 --- [ol-5-thread-158] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:57:30.680 INFO 2123 --- [ol-5-thread-158] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:57:35.936 INFO 2123 --- [ol-5-thread-158] o.ihtsdo.otf.snomedboot.ReleaseImporter : 1130957 relationships read from sct2_StatedRelationship_Full_INT_20180731.txt
2018-11-22 07:57:36.245 INFO 2123 --- [ol-5-thread-157] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:57:41.359 INFO 2123 --- [ol-5-thread-157] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:57:45.631 INFO 2123 --- [ol-5-thread-157] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:57:50.152 INFO 2123 --- [ol-5-thread-157] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:57:54.975 INFO 2123 --- [ol-5-thread-157] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:58:00.563 INFO 2123 --- [ol-5-thread-157] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:58:03.011 INFO 2123 --- [ol-5-thread-157] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:58:04.425 INFO 2123 --- [ol-5-thread-157] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:58:05.932 INFO 2123 --- [ol-5-thread-157] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:58:07.375 INFO 2123 --- [ol-5-thread-157] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:58:09.026 INFO 2123 --- [ol-5-thread-157] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:58:10.382 INFO 2123 --- [ol-5-thread-157] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:58:11.914 INFO 2123 --- [ol-5-thread-157] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:58:13.619 INFO 2123 --- [ol-5-thread-157] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:58:15.231 INFO 2123 --- [ol-5-thread-157] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:58:16.840 INFO 2123 --- [ol-5-thread-157] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:58:18.359 INFO 2123 --- [ol-5-thread-157] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:58:20.079 INFO 2123 --- [ol-5-thread-157] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:58:21.487 INFO 2123 --- [ol-5-thread-157] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:58:23.158 INFO 2123 --- [ol-5-thread-157] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:58:24.480 INFO 2123 --- [ol-5-thread-157] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:58:25.250 INFO 2123 --- [ol-5-thread-157] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:58:26.170 INFO 2123 --- [ol-5-thread-157] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:58:27.168 INFO 2123 --- [ol-5-thread-157] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:58:28.179 INFO 2123 --- [ol-5-thread-157] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 07:58:29.876 INFO 2123 --- [ol-5-thread-157] o.ihtsdo.otf.snomedboot.ReleaseImporter : 5112181 relationships read from sct2_Relationship_Full_INT_20180731.txt
2018-11-22 07:58:29.876 INFO 2123 --- [ol-5-thread-157] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20100131
2018-11-22 07:58:29.876 INFO 2123 --- [ol-5-thread-158] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20100131
2018-11-22 07:58:29.876 INFO 2123 --- [ol-5-thread-158] o.ihtsdo.otf.snomedboot.ReleaseImporter : 11 reference set members read from sct2_sRefset_OWLAxiomFull_INT_20180731.txt
2018-11-22 07:58:29.877 INFO 2123 --- [ol-5-thread-157] o.ihtsdo.otf.snomedboot.ReleaseImporter : 144 reference set members read from der2_ssccRefset_MRCMAttributeRangeFull_INT_20180731.txt
2018-11-22 07:58:29.878 INFO 2123 --- [ol-5-thread-157] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20100131
2018-11-22 07:58:29.878 INFO 2123 --- [ol-5-thread-158] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20100131
2018-11-22 07:58:29.878 INFO 2123 --- [ol-5-thread-161] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20100131
2018-11-22 07:58:29.878 INFO 2123 --- [ol-5-thread-157] o.ihtsdo.otf.snomedboot.ReleaseImporter : 7 reference set members read from sct2_sRefset_OWLOntologyFull_INT_20180731.txt
2018-11-22 07:58:29.878 INFO 2123 --- [ol-5-thread-157] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20100131
2018-11-22 07:58:29.878 INFO 2123 --- [ol-5-thread-162] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20100131
2018-11-22 07:58:29.878 INFO 2123 --- [ol-5-thread-157] o.ihtsdo.otf.snomedboot.ReleaseImporter : 3 reference set members read from der2_cRefset_MRCMModuleScopeFull_INT_20180731.txt
2018-11-22 07:58:29.878 INFO 2123 --- [ol-5-thread-162] o.ihtsdo.otf.snomedboot.ReleaseImporter : 4 reference set members read from der2_ciRefset_DescriptionTypeFull_INT_20180731.txt
2018-11-22 07:58:29.878 INFO 2123 --- [ol-5-thread-161] o.ihtsdo.otf.snomedboot.ReleaseImporter : 167 reference set members read from der2_cciRefset_RefsetDescriptorFull_INT_20180731.txt
2018-11-22 07:58:29.878 INFO 2123 --- [ol-5-thread-161] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20100131
2018-11-22 07:58:29.878 INFO 2123 --- [ol-5-thread-162] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20100131
2018-11-22 07:58:29.878 INFO 2123 --- [ol-5-thread-163] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20100131
2018-11-22 07:58:29.880 INFO 2123 --- [ol-5-thread-161] o.ihtsdo.otf.snomedboot.ReleaseImporter : 36 reference set members read from der2_sssssssRefset_MRCMDomainFull_INT_20180731.txt
2018-11-22 07:58:29.878 INFO 2123 --- [ol-5-thread-157] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20100131
2018-11-22 07:58:29.881 INFO 2123 --- [ol-5-thread-161] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20100131
2018-11-22 07:58:29.881 INFO 2123 --- [ol-5-thread-157] o.ihtsdo.otf.snomedboot.ReleaseImporter : 154 reference set members read from der2_cissccRefset_MRCMAttributeDomainFull_INT_20180731.txt
2018-11-22 07:58:29.890 INFO 2123 --- [ol-5-thread-164] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20100131
2018-11-22 07:58:29.898 INFO 2123 --- [ol-5-thread-157] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20100131
2018-11-22 07:58:29.898 INFO 2123 --- [ol-5-thread-165] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20100131
2018-11-22 07:58:29.899 INFO 2123 --- [ol-5-thread-165] o.ihtsdo.otf.snomedboot.ReleaseImporter : 56 reference set members read from der2_ssRefset_ModuleDependencyFull_INT_20180731.txt
2018-11-22 07:58:29.932 INFO 2123 --- [ol-5-thread-158] o.ihtsdo.otf.snomedboot.ReleaseImporter : 19870 reference set members read from der2_Refset_SimpleFull_INT_20180731.txt
2018-11-22 07:58:29.979 INFO 2123 --- [ol-5-thread-162] i.k.elasticvc.api.ComponentService : Saving batch of 2239 Concepts
2018-11-22 07:58:30.377 INFO 2123 --- [ol-5-thread-162] i.k.elasticvc.api.ComponentService : Saving batch of 1144 Descriptions
2018-11-22 07:58:30.757 INFO 2123 --- [ol-5-thread-162] i.k.elasticvc.api.ComponentService : Saving batch of 3387 Relationships
2018-11-22 07:58:30.781 INFO 2123 --- [ol-5-thread-161] o.ihtsdo.otf.snomedboot.ReleaseImporter : 224459 reference set members read from der2_iisssccRefset_ExtendedMapFull_INT_20180731.txt
2018-11-22 07:58:31.510 INFO 2123 --- [ol-5-thread-162] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:58:32.680 INFO 2123 --- [ol-5-thread-162] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:58:33.766 INFO 2123 --- [ol-5-thread-162] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:58:35.097 INFO 2123 --- [ol-5-thread-157] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:58:36.367 INFO 2123 --- [ol-5-thread-163] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:58:37.550 INFO 2123 --- [ol-5-thread-162] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:58:38.474 INFO 2123 --- [ol-5-thread-162] o.ihtsdo.otf.snomedboot.ReleaseImporter : 167899 reference set members read from der2_cRefset_AssociationFull_INT_20180731.txt
2018-11-22 07:58:38.927 INFO 2123 --- [ol-5-thread-157] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:58:40.102 INFO 2123 --- [ol-5-thread-157] o.ihtsdo.otf.snomedboot.ReleaseImporter : 484195 reference set members read from der2_sRefset_SimpleMapFull_INT_20180731.txt
2018-11-22 07:58:41.229 INFO 2123 --- [ol-5-thread-164] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:58:44.206 INFO 2123 --- [ol-5-thread-164] o.ihtsdo.otf.snomedboot.ReleaseImporter : 665802 reference set members read from der2_cRefset_AttributeValueFull_INT_20180731.txt
2018-11-22 07:58:45.316 INFO 2123 --- [ol-5-thread-163] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:58:51.381 INFO 2123 --- [ol-5-thread-163] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:58:58.079 INFO 2123 --- [ol-5-thread-163] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:59:02.977 INFO 2123 --- [ol-5-thread-163] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 07:59:04.639 INFO 2123 --- [ol-5-thread-163] o.ihtsdo.otf.snomedboot.ReleaseImporter : 3207060 reference set members read from der2_cRefset_LanguageFull-en_INT_20180731.txt
2018-11-22 07:59:04.812 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 2751 ReferenceSetMembers
2018-11-22 07:59:05.520 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: started
2018-11-22 07:59:05.521 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: get branch criteria took 0.001 seconds
2018-11-22 07:59:06.458 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed is-a relationships. took 0.937 seconds
2018-11-22 07:59:06.459 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed axiom is-a fragments. took 0.001 seconds
2018-11-22 07:59:06.459 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : Performing incremental update of stated semantic index
2018-11-22 07:59:07.786 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect existingAncestors from QueryConcept. took 1.327 seconds
2018-11-22 07:59:08.963 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect existingDescendants from QueryConcept. took 1.177 seconds
2018-11-22 07:59:14.027 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Build existing nodes from Relationships. took 5.064 seconds
2018-11-22 07:59:14.881 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Build existing nodes from Axioms. took 0.854 seconds
2018-11-22 07:59:14.881 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : 43588 existing nodes loaded.
2018-11-22 07:59:16.358 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Update graph using changed relationships. took 1.477 seconds
2018-11-22 07:59:16.360 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Update graph using changed axioms. took 0.002 seconds
2018-11-22 07:59:24.592 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect existingDescendants from QueryConcept. took 8.232 seconds
2018-11-22 07:59:24.611 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:59:31.420 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:59:40.658 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 07:59:50.505 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 3297 QueryConcepts
2018-11-22 07:59:54.697 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Save updated QueryConcepts took 30.105 seconds
2018-11-22 07:59:54.697 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: total took 49.177 seconds
2018-11-22 07:59:54.697 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: started
2018-11-22 07:59:54.697 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: get branch criteria took 0.0 seconds
2018-11-22 08:00:01.005 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect changed is-a relationships. took 6.308 seconds
2018-11-22 08:00:01.005 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : Performing incremental update of inferred semantic index
2018-11-22 08:00:04.127 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect existingAncestors from QueryConcept. took 3.122 seconds
2018-11-22 08:00:06.830 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect existingDescendants from QueryConcept. took 2.703 seconds
2018-11-22 08:00:19.943 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Build existing nodes from Relationships. took 13.113 seconds
2018-11-22 08:00:19.943 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : 61894 existing nodes loaded.
2018-11-22 08:00:26.389 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Update graph using changed relationships. took 6.446 seconds
2018-11-22 08:00:45.057 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect existingDescendants from QueryConcept. took 18.668 seconds
2018-11-22 08:00:45.087 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 08:00:59.280 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 08:01:04.301 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 08:01:08.137 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 08:01:10.934 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 08:01:16.732 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5797 QueryConcepts
2018-11-22 08:01:19.339 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Save updated QueryConcepts took 34.282 seconds
2018-11-22 08:01:19.339 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: total took 84.642 seconds
2018-11-22 08:01:19.354 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Completed commit on MAIN at 1542873422190
2018-11-22 08:01:19.360 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Creating Code System version - Code System: SNOMEDCT, Version: 2010-01-31, Release Branch: MAIN/2010-01-31
2018-11-22 08:01:19.360 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Versioning content...
2018-11-22 08:01:19.370 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Open commit on MAIN at 1542873679370
2018-11-22 08:01:19.411 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: started
2018-11-22 08:01:19.411 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: get branch criteria took 0.0 seconds
2018-11-22 08:01:19.413 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed is-a relationships. took 0.002 seconds
2018-11-22 08:01:19.414 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed axiom is-a fragments. took 0.001 seconds
2018-11-22 08:01:19.417 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: started
2018-11-22 08:01:19.417 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: get branch criteria took 0.0 seconds
2018-11-22 08:01:19.419 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect changed is-a relationships. took 0.002 seconds
2018-11-22 08:01:19.429 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Completed commit on MAIN at 1542873679370
2018-11-22 08:01:19.429 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Creating version branch content...
2018-11-22 08:01:19.432 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Creating branch Branch{path=MAIN/2010-01-31, base=1542873679370, head=1542873679429, start=1542873679429, end=null}
2018-11-22 08:01:19.440 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Persisting Code System Version...
2018-11-22 08:01:19.448 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Versioning complete.
2018-11-22 08:01:19.457 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Open commit on MAIN at 1542873679457
2018-11-22 08:01:19.457 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Loading release delta 20100731
2018-11-22 08:01:19.457 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading concepts for release 20100731
2018-11-22 08:01:20.086 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : 581635 concepts read from sct2_Concept_Full_INT_20180731.txt
2018-11-22 08:01:20.086 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : includedReferenceSetPathPatterns: []
2018-11-22 08:01:20.086 INFO 2123 --- [ol-5-thread-166] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading relationships for release 20100731
2018-11-22 08:01:20.090 INFO 2123 --- [ol-5-thread-167] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading relationships for release 20100731
2018-11-22 08:01:20.094 INFO 2123 --- [ol-5-thread-168] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading descriptions for release 20100731
2018-11-22 08:01:20.094 INFO 2123 --- [ol-5-thread-169] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading descriptions for release 20100731
2018-11-22 08:01:20.130 INFO 2123 --- [ol-5-thread-169] o.ihtsdo.otf.snomedboot.ReleaseImporter : 5151 descriptions read from sct2_TextDefinition_Full-en_INT_20180731.txt
2018-11-22 08:01:21.308 INFO 2123 --- [ol-5-thread-167] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 08:01:23.608 INFO 2123 --- [ol-5-thread-167] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 08:01:25.245 INFO 2123 --- [ol-5-thread-167] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 08:01:26.779 INFO 2123 --- [ol-5-thread-168] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 08:01:28.503 INFO 2123 --- [ol-5-thread-167] o.ihtsdo.otf.snomedboot.ReleaseImporter : 1130957 relationships read from sct2_StatedRelationship_Full_INT_20180731.txt
2018-11-22 08:01:29.473 INFO 2123 --- [ol-5-thread-168] o.ihtsdo.otf.snomedboot.ReleaseImporter : 2513952 descriptions read from sct2_Description_Full-en_INT_20180731.txt
2018-11-22 08:01:31.243 INFO 2123 --- [ol-5-thread-166] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 08:01:34.762 INFO 2123 --- [ol-5-thread-166] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 08:01:38.569 INFO 2123 --- [ol-5-thread-166] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 08:01:40.221 INFO 2123 --- [ol-5-thread-166] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 08:01:42.181 INFO 2123 --- [ol-5-thread-166] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 08:01:45.227 INFO 2123 --- [ol-5-thread-166] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 08:01:48.110 INFO 2123 --- [ol-5-thread-166] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 08:01:51.817 INFO 2123 --- [ol-5-thread-166] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 08:01:55.472 INFO 2123 --- [ol-5-thread-166] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 08:01:57.663 INFO 2123 --- [ol-5-thread-166] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 08:02:00.335 INFO 2123 --- [ol-5-thread-166] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 08:02:04.049 INFO 2123 --- [ol-5-thread-166] o.ihtsdo.otf.snomedboot.ReleaseImporter : 5112181 relationships read from sct2_Relationship_Full_INT_20180731.txt
2018-11-22 08:02:04.049 INFO 2123 --- [ol-5-thread-166] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20100731
2018-11-22 08:02:04.049 INFO 2123 --- [ol-5-thread-168] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20100731
2018-11-22 08:02:04.049 INFO 2123 --- [ol-5-thread-167] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20100731
2018-11-22 08:02:04.049 INFO 2123 --- [ol-5-thread-168] o.ihtsdo.otf.snomedboot.ReleaseImporter : 11 reference set members read from sct2_sRefset_OWLAxiomFull_INT_20180731.txt
2018-11-22 08:02:04.049 INFO 2123 --- [ol-5-thread-169] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20100731
2018-11-22 08:02:04.049 INFO 2123 --- [ol-5-thread-169] o.ihtsdo.otf.snomedboot.ReleaseImporter : 7 reference set members read from sct2_sRefset_OWLOntologyFull_INT_20180731.txt
2018-11-22 08:02:04.050 INFO 2123 --- [ol-5-thread-167] o.ihtsdo.otf.snomedboot.ReleaseImporter : 167 reference set members read from der2_cciRefset_RefsetDescriptorFull_INT_20180731.txt
2018-11-22 08:02:04.050 INFO 2123 --- [ol-5-thread-166] o.ihtsdo.otf.snomedboot.ReleaseImporter : 144 reference set members read from der2_ssccRefset_MRCMAttributeRangeFull_INT_20180731.txt
2018-11-22 08:02:04.050 INFO 2123 --- [ol-5-thread-169] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20100731
2018-11-22 08:02:04.050 INFO 2123 --- [ol-5-thread-170] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20100731
2018-11-22 08:02:04.050 INFO 2123 --- [ol-5-thread-168] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20100731
2018-11-22 08:02:04.050 INFO 2123 --- [ol-5-thread-169] o.ihtsdo.otf.snomedboot.ReleaseImporter : 3 reference set members read from der2_cRefset_MRCMModuleScopeFull_INT_20180731.txt
2018-11-22 08:02:04.050 INFO 2123 --- [ol-5-thread-169] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20100731
2018-11-22 08:02:04.050 INFO 2123 --- [ol-5-thread-171] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20100731
2018-11-22 08:02:04.052 INFO 2123 --- [ol-5-thread-171] o.ihtsdo.otf.snomedboot.ReleaseImporter : 36 reference set members read from der2_sssssssRefset_MRCMDomainFull_INT_20180731.txt
2018-11-22 08:02:04.053 INFO 2123 --- [ol-5-thread-167] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20100731
2018-11-22 08:02:04.053 INFO 2123 --- [ol-5-thread-167] o.ihtsdo.otf.snomedboot.ReleaseImporter : 4 reference set members read from der2_ciRefset_DescriptionTypeFull_INT_20180731.txt
2018-11-22 08:02:04.056 INFO 2123 --- [ol-5-thread-167] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20100731
2018-11-22 08:02:04.056 INFO 2123 --- [ol-5-thread-166] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20100731
2018-11-22 08:02:04.057 INFO 2123 --- [ol-5-thread-166] o.ihtsdo.otf.snomedboot.ReleaseImporter : 154 reference set members read from der2_cissccRefset_MRCMAttributeDomainFull_INT_20180731.txt
2018-11-22 08:02:04.062 INFO 2123 --- [ol-5-thread-171] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20100731
2018-11-22 08:02:04.062 INFO 2123 --- [ol-5-thread-171] o.ihtsdo.otf.snomedboot.ReleaseImporter : 56 reference set members read from der2_ssRefset_ModuleDependencyFull_INT_20180731.txt
2018-11-22 08:02:04.074 INFO 2123 --- [ol-5-thread-172] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20100731
2018-11-22 08:02:04.082 INFO 2123 --- [ol-5-thread-173] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20100731
2018-11-22 08:02:04.095 INFO 2123 --- [ol-5-thread-170] o.ihtsdo.otf.snomedboot.ReleaseImporter : 19870 reference set members read from der2_Refset_SimpleFull_INT_20180731.txt
2018-11-22 08:02:04.613 INFO 2123 --- [ol-5-thread-169] o.ihtsdo.otf.snomedboot.ReleaseImporter : 167899 reference set members read from der2_cRefset_AssociationFull_INT_20180731.txt
2018-11-22 08:02:05.070 INFO 2123 --- [ol-5-thread-167] o.ihtsdo.otf.snomedboot.ReleaseImporter : 224459 reference set members read from der2_iisssccRefset_ExtendedMapFull_INT_20180731.txt
2018-11-22 08:02:05.372 INFO 2123 --- [ol-5-thread-173] o.ihtsdo.otf.snomedboot.ReleaseImporter : 484195 reference set members read from der2_sRefset_SimpleMapFull_INT_20180731.txt
2018-11-22 08:02:05.957 INFO 2123 --- [ol-5-thread-172] o.ihtsdo.otf.snomedboot.ReleaseImporter : 665802 reference set members read from der2_cRefset_AttributeValueFull_INT_20180731.txt
2018-11-22 08:02:05.996 INFO 2123 --- [ol-5-thread-168] i.k.elasticvc.api.ComponentService : Saving batch of 2615 Concepts
2018-11-22 08:02:06.335 INFO 2123 --- [ol-5-thread-168] i.k.elasticvc.api.ComponentService : Saving batch of 1012 Descriptions
2018-11-22 08:02:06.632 INFO 2123 --- [ol-5-thread-168] i.k.elasticvc.api.ComponentService : Saving batch of 2906 Relationships
2018-11-22 08:02:07.561 INFO 2123 --- [ol-5-thread-168] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 08:02:11.108 INFO 2123 --- [ol-5-thread-168] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 08:02:13.681 INFO 2123 --- [ol-5-thread-168] o.ihtsdo.otf.snomedboot.ReleaseImporter : 3207060 reference set members read from der2_cRefset_LanguageFull-en_INT_20180731.txt
2018-11-22 08:02:13.923 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 3912 ReferenceSetMembers
2018-11-22 08:02:14.651 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: started
2018-11-22 08:02:14.651 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: get branch criteria took 0.0 seconds
2018-11-22 08:02:14.767 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed is-a relationships. took 0.116 seconds
2018-11-22 08:02:14.783 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed axiom is-a fragments. took 0.016 seconds
2018-11-22 08:02:14.783 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : Performing incremental update of stated semantic index
2018-11-22 08:02:15.065 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect existingAncestors from QueryConcept. took 0.282 seconds
2018-11-22 08:02:15.690 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect existingDescendants from QueryConcept. took 0.625 seconds
2018-11-22 08:02:16.750 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Build existing nodes from Relationships. took 1.06 seconds
2018-11-22 08:02:17.046 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Build existing nodes from Axioms. took 0.296 seconds
2018-11-22 08:02:17.046 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : 11696 existing nodes loaded.
2018-11-22 08:02:17.471 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Update graph using changed relationships. took 0.425 seconds
2018-11-22 08:02:17.473 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Update graph using changed axioms. took 0.002 seconds
2018-11-22 08:02:19.025 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect existingDescendants from QueryConcept. took 1.552 seconds
2018-11-22 08:02:19.031 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 08:02:21.532 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 1359 QueryConcepts
2018-11-22 08:02:22.450 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Save updated QueryConcepts took 3.425 seconds
2018-11-22 08:02:22.450 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: total took 7.799 seconds
2018-11-22 08:02:22.450 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: started
2018-11-22 08:02:22.450 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: get branch criteria took 0.0 seconds
2018-11-22 08:02:22.687 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect changed is-a relationships. took 0.237 seconds
2018-11-22 08:02:22.687 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : Performing incremental update of inferred semantic index
2018-11-22 08:02:23.382 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect existingAncestors from QueryConcept. took 0.695 seconds
2018-11-22 08:02:24.984 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect existingDescendants from QueryConcept. took 1.602 seconds
2018-11-22 08:02:27.840 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Build existing nodes from Relationships. took 2.856 seconds
2018-11-22 08:02:27.840 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : 21677 existing nodes loaded.
2018-11-22 08:02:30.336 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Update graph using changed relationships. took 2.496 seconds
2018-11-22 08:02:37.083 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect existingDescendants from QueryConcept. took 6.747 seconds
2018-11-22 08:02:37.097 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 08:02:51.776 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 08:03:04.134 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 1412 QueryConcepts
2018-11-22 08:03:05.126 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Save updated QueryConcepts took 28.043 seconds
2018-11-22 08:03:05.126 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: total took 42.676 seconds
2018-11-22 08:03:05.144 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Completed commit on MAIN at 1542873679457
2018-11-22 08:03:05.155 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Creating Code System version - Code System: SNOMEDCT, Version: 2010-07-31, Release Branch: MAIN/2010-07-31
2018-11-22 08:03:05.155 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Versioning content...
2018-11-22 08:03:05.166 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Open commit on MAIN at 1542873785166
2018-11-22 08:03:05.233 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: started
2018-11-22 08:03:05.233 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: get branch criteria took 0.0 seconds
2018-11-22 08:03:05.236 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed is-a relationships. took 0.003 seconds
2018-11-22 08:03:05.238 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed axiom is-a fragments. took 0.002 seconds
2018-11-22 08:03:05.240 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: started
2018-11-22 08:03:05.240 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: get branch criteria took 0.0 seconds
2018-11-22 08:03:05.244 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect changed is-a relationships. took 0.004 seconds
2018-11-22 08:03:05.262 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Completed commit on MAIN at 1542873785166
2018-11-22 08:03:05.262 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Creating version branch content...
2018-11-22 08:03:05.264 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Creating branch Branch{path=MAIN/2010-07-31, base=1542873785166, head=1542873785262, start=1542873785262, end=null}
2018-11-22 08:03:05.275 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Persisting Code System Version...
2018-11-22 08:03:05.288 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Versioning complete.
2018-11-22 08:03:05.299 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Open commit on MAIN at 1542873785299
2018-11-22 08:03:05.299 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Loading release delta 20110131
2018-11-22 08:03:05.299 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading concepts for release 20110131
2018-11-22 08:03:06.141 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : 581635 concepts read from sct2_Concept_Full_INT_20180731.txt
2018-11-22 08:03:06.141 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : includedReferenceSetPathPatterns: []
2018-11-22 08:03:06.141 INFO 2123 --- [ol-5-thread-168] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading relationships for release 20110131
2018-11-22 08:03:06.142 INFO 2123 --- [ol-5-thread-175] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading descriptions for release 20110131
2018-11-22 08:03:06.143 INFO 2123 --- [ol-5-thread-176] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading descriptions for release 20110131
2018-11-22 08:03:06.142 INFO 2123 --- [ol-5-thread-174] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading relationships for release 20110131
2018-11-22 08:03:06.195 INFO 2123 --- [ol-5-thread-176] o.ihtsdo.otf.snomedboot.ReleaseImporter : 5151 descriptions read from sct2_TextDefinition_Full-en_INT_20180731.txt
2018-11-22 08:03:07.364 INFO 2123 --- [ol-5-thread-174] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 08:03:10.459 INFO 2123 --- [ol-5-thread-174] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 08:03:13.091 INFO 2123 --- [ol-5-thread-175] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 08:03:13.308 INFO 2123 --- [ol-5-thread-174] o.ihtsdo.otf.snomedboot.ReleaseImporter : 1130957 relationships read from sct2_StatedRelationship_Full_INT_20180731.txt
2018-11-22 08:03:15.945 INFO 2123 --- [ol-5-thread-175] o.ihtsdo.otf.snomedboot.ReleaseImporter : 2513952 descriptions read from sct2_Description_Full-en_INT_20180731.txt
2018-11-22 08:03:16.904 INFO 2123 --- [ol-5-thread-168] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 08:03:20.153 INFO 2123 --- [ol-5-thread-168] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 08:03:22.467 INFO 2123 --- [ol-5-thread-168] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 08:03:25.322 INFO 2123 --- [ol-5-thread-168] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 08:03:28.446 INFO 2123 --- [ol-5-thread-168] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 08:03:29.833 INFO 2123 --- [ol-5-thread-168] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 08:03:32.463 INFO 2123 --- [ol-5-thread-168] o.ihtsdo.otf.snomedboot.ReleaseImporter : 5112181 relationships read from sct2_Relationship_Full_INT_20180731.txt
2018-11-22 08:03:32.463 INFO 2123 --- [ol-5-thread-175] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20110131
2018-11-22 08:03:32.464 INFO 2123 --- [ol-5-thread-175] o.ihtsdo.otf.snomedboot.ReleaseImporter : 11 reference set members read from sct2_sRefset_OWLAxiomFull_INT_20180731.txt
2018-11-22 08:03:32.464 INFO 2123 --- [ol-5-thread-174] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20110131
2018-11-22 08:03:32.464 INFO 2123 --- [ol-5-thread-174] o.ihtsdo.otf.snomedboot.ReleaseImporter : 167 reference set members read from der2_cciRefset_RefsetDescriptorFull_INT_20180731.txt
2018-11-22 08:03:32.464 INFO 2123 --- [ol-5-thread-176] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20110131
2018-11-22 08:03:32.464 INFO 2123 --- [ol-5-thread-176] o.ihtsdo.otf.snomedboot.ReleaseImporter : 7 reference set members read from sct2_sRefset_OWLOntologyFull_INT_20180731.txt
2018-11-22 08:03:32.464 INFO 2123 --- [ol-5-thread-168] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20110131
2018-11-22 08:03:32.464 INFO 2123 --- [ol-5-thread-176] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20110131
2018-11-22 08:03:32.464 INFO 2123 --- [ol-5-thread-176] o.ihtsdo.otf.snomedboot.ReleaseImporter : 4 reference set members read from der2_ciRefset_DescriptionTypeFull_INT_20180731.txt
2018-11-22 08:03:32.464 INFO 2123 --- [ol-5-thread-174] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20110131
2018-11-22 08:03:32.464 INFO 2123 --- [ol-5-thread-174] o.ihtsdo.otf.snomedboot.ReleaseImporter : 3 reference set members read from der2_cRefset_MRCMModuleScopeFull_INT_20180731.txt
2018-11-22 08:03:32.464 INFO 2123 --- [ol-5-thread-175] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20110131
2018-11-22 08:03:32.465 INFO 2123 --- [ol-5-thread-168] o.ihtsdo.otf.snomedboot.ReleaseImporter : 144 reference set members read from der2_ssccRefset_MRCMAttributeRangeFull_INT_20180731.txt
2018-11-22 08:03:32.465 INFO 2123 --- [ol-5-thread-177] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20110131
2018-11-22 08:03:32.469 INFO 2123 --- [ol-5-thread-174] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20110131
2018-11-22 08:03:32.469 INFO 2123 --- [ol-5-thread-178] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20110131
2018-11-22 08:03:32.469 INFO 2123 --- [ol-5-thread-179] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20110131
2018-11-22 08:03:32.470 INFO 2123 --- [ol-5-thread-174] o.ihtsdo.otf.snomedboot.ReleaseImporter : 154 reference set members read from der2_cissccRefset_MRCMAttributeDomainFull_INT_20180731.txt
2018-11-22 08:03:32.470 INFO 2123 --- [ol-5-thread-176] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20110131
2018-11-22 08:03:32.471 INFO 2123 --- [ol-5-thread-178] o.ihtsdo.otf.snomedboot.ReleaseImporter : 36 reference set members read from der2_sssssssRefset_MRCMDomainFull_INT_20180731.txt
2018-11-22 08:03:32.471 INFO 2123 --- [ol-5-thread-168] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20110131
2018-11-22 08:03:32.471 INFO 2123 --- [ol-5-thread-178] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20110131
2018-11-22 08:03:32.482 INFO 2123 --- [ol-5-thread-180] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20110131
2018-11-22 08:03:32.483 INFO 2123 --- [ol-5-thread-180] o.ihtsdo.otf.snomedboot.ReleaseImporter : 56 reference set members read from der2_ssRefset_ModuleDependencyFull_INT_20180731.txt
2018-11-22 08:03:32.507 INFO 2123 --- [ol-5-thread-177] o.ihtsdo.otf.snomedboot.ReleaseImporter : 19870 reference set members read from der2_Refset_SimpleFull_INT_20180731.txt
2018-11-22 08:03:33.295 INFO 2123 --- [ol-5-thread-168] o.ihtsdo.otf.snomedboot.ReleaseImporter : 167899 reference set members read from der2_cRefset_AssociationFull_INT_20180731.txt
2018-11-22 08:03:33.521 INFO 2123 --- [ol-5-thread-179] o.ihtsdo.otf.snomedboot.ReleaseImporter : 224459 reference set members read from der2_iisssccRefset_ExtendedMapFull_INT_20180731.txt
2018-11-22 08:03:33.930 INFO 2123 --- [ol-5-thread-178] o.ihtsdo.otf.snomedboot.ReleaseImporter : 484195 reference set members read from der2_sRefset_SimpleMapFull_INT_20180731.txt
2018-11-22 08:03:34.037 INFO 2123 --- [ol-5-thread-175] i.k.elasticvc.api.ComponentService : Saving batch of 3613 Concepts
2018-11-22 08:03:34.758 INFO 2123 --- [ol-5-thread-175] i.k.elasticvc.api.ComponentService : Saving batch of 3478 Descriptions
2018-11-22 08:03:35.360 INFO 2123 --- [ol-5-thread-175] i.k.elasticvc.api.ComponentService : Saving batch of 4474 Relationships
2018-11-22 08:03:36.385 INFO 2123 --- [ol-5-thread-175] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 08:03:39.165 INFO 2123 --- [ol-5-thread-176] o.ihtsdo.otf.snomedboot.ReleaseImporter : 665802 reference set members read from der2_cRefset_AttributeValueFull_INT_20180731.txt
2018-11-22 08:03:41.539 INFO 2123 --- [ol-5-thread-175] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 08:03:44.344 INFO 2123 --- [ol-5-thread-175] o.ihtsdo.otf.snomedboot.ReleaseImporter : 3207060 reference set members read from der2_cRefset_LanguageFull-en_INT_20180731.txt
2018-11-22 08:03:45.214 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 3384 ReferenceSetMembers
2018-11-22 08:03:46.691 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: started
2018-11-22 08:03:46.691 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: get branch criteria took 0.0 seconds
2018-11-22 08:03:47.593 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed is-a relationships. took 0.902 seconds
2018-11-22 08:03:47.595 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed axiom is-a fragments. took 0.002 seconds
2018-11-22 08:03:47.595 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : Performing incremental update of stated semantic index
2018-11-22 08:03:47.878 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect existingAncestors from QueryConcept. took 0.283 seconds
2018-11-22 08:03:48.448 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect existingDescendants from QueryConcept. took 0.57 seconds
2018-11-22 08:03:49.684 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Build existing nodes from Relationships. took 1.236 seconds
2018-11-22 08:03:49.871 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Build existing nodes from Axioms. took 0.187 seconds
2018-11-22 08:03:49.871 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : 7590 existing nodes loaded.
2018-11-22 08:03:51.034 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Update graph using changed relationships. took 1.163 seconds
2018-11-22 08:03:51.035 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Update graph using changed axioms. took 0.001 seconds
2018-11-22 08:03:52.713 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect existingDescendants from QueryConcept. took 1.678 seconds
2018-11-22 08:03:52.720 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 6575 QueryConcepts
2018-11-22 08:03:59.350 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Save updated QueryConcepts took 6.637 seconds
2018-11-22 08:03:59.350 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: total took 12.659 seconds
2018-11-22 08:03:59.350 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: started
2018-11-22 08:03:59.350 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: get branch criteria took 0.0 seconds
2018-11-22 08:04:01.262 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect changed is-a relationships. took 1.912 seconds
2018-11-22 08:04:01.262 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : Performing incremental update of inferred semantic index
2018-11-22 08:04:01.730 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect existingAncestors from QueryConcept. took 0.468 seconds
2018-11-22 08:04:03.574 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect existingDescendants from QueryConcept. took 1.844 seconds
2018-11-22 08:04:06.628 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Build existing nodes from Relationships. took 3.054 seconds
2018-11-22 08:04:06.628 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : 22376 existing nodes loaded.
2018-11-22 08:04:07.941 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Update graph using changed relationships. took 1.313 seconds
2018-11-22 08:04:10.861 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect existingDescendants from QueryConcept. took 2.92 seconds
2018-11-22 08:04:10.883 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 08:04:15.130 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 7457 QueryConcepts
2018-11-22 08:04:19.336 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Save updated QueryConcepts took 8.475 seconds
2018-11-22 08:04:19.337 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: total took 19.987 seconds
2018-11-22 08:04:19.351 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Completed commit on MAIN at 1542873785299
2018-11-22 08:04:19.355 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Creating Code System version - Code System: SNOMEDCT, Version: 2011-01-31, Release Branch: MAIN/2011-01-31
2018-11-22 08:04:19.355 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Versioning content...
2018-11-22 08:04:19.367 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Open commit on MAIN at 1542873859367
2018-11-22 08:04:19.423 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: started
2018-11-22 08:04:19.423 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: get branch criteria took 0.0 seconds
2018-11-22 08:04:19.426 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed is-a relationships. took 0.003 seconds
2018-11-22 08:04:19.428 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed axiom is-a fragments. took 0.002 seconds
2018-11-22 08:04:19.431 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: started
2018-11-22 08:04:19.431 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: get branch criteria took 0.0 seconds
2018-11-22 08:04:19.434 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect changed is-a relationships. took 0.003 seconds
2018-11-22 08:04:19.448 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Completed commit on MAIN at 1542873859367
2018-11-22 08:04:19.448 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Creating version branch content...
2018-11-22 08:04:19.450 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Creating branch Branch{path=MAIN/2011-01-31, base=1542873859367, head=1542873859448, start=1542873859448, end=null}
2018-11-22 08:04:19.460 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Persisting Code System Version...
2018-11-22 08:04:19.469 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Versioning complete.
2018-11-22 08:04:19.480 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Open commit on MAIN at 1542873859480
2018-11-22 08:04:19.480 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Loading release delta 20110731
2018-11-22 08:04:19.480 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading concepts for release 20110731
2018-11-22 08:04:20.065 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : 581635 concepts read from sct2_Concept_Full_INT_20180731.txt
2018-11-22 08:04:20.065 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : includedReferenceSetPathPatterns: []
2018-11-22 08:04:20.065 INFO 2123 --- [ol-5-thread-176] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading relationships for release 20110731
2018-11-22 08:04:20.065 INFO 2123 --- [ol-5-thread-175] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading relationships for release 20110731
2018-11-22 08:04:20.066 INFO 2123 --- [ol-5-thread-178] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading descriptions for release 20110731
2018-11-22 08:04:20.066 INFO 2123 --- [ol-5-thread-179] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading descriptions for release 20110731
2018-11-22 08:04:20.106 INFO 2123 --- [ol-5-thread-179] o.ihtsdo.otf.snomedboot.ReleaseImporter : 5151 descriptions read from sct2_TextDefinition_Full-en_INT_20180731.txt
2018-11-22 08:04:22.453 INFO 2123 --- [ol-5-thread-176] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 08:04:24.052 INFO 2123 --- [ol-5-thread-176] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 08:04:25.746 INFO 2123 --- [ol-5-thread-178] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 08:04:26.355 INFO 2123 --- [ol-5-thread-176] o.ihtsdo.otf.snomedboot.ReleaseImporter : 1130957 relationships read from sct2_StatedRelationship_Full_INT_20180731.txt
2018-11-22 08:04:27.631 INFO 2123 --- [ol-5-thread-178] o.ihtsdo.otf.snomedboot.ReleaseImporter : 2513952 descriptions read from sct2_Description_Full-en_INT_20180731.txt
2018-11-22 08:04:30.105 INFO 2123 --- [ol-5-thread-175] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 08:04:33.255 INFO 2123 --- [ol-5-thread-175] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 08:04:35.362 INFO 2123 --- [ol-5-thread-175] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 08:04:38.246 INFO 2123 --- [ol-5-thread-175] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 08:04:40.448 INFO 2123 --- [ol-5-thread-175] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 08:04:41.786 INFO 2123 --- [ol-5-thread-175] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 08:04:43.317 INFO 2123 --- [ol-5-thread-175] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 08:04:44.922 INFO 2123 --- [ol-5-thread-175] o.ihtsdo.otf.snomedboot.ReleaseImporter : 5112181 relationships read from sct2_Relationship_Full_INT_20180731.txt
2018-11-22 08:04:44.922 INFO 2123 --- [ol-5-thread-175] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20110731
2018-11-22 08:04:44.922 INFO 2123 --- [ol-5-thread-176] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20110731
2018-11-22 08:04:44.922 INFO 2123 --- [ol-5-thread-178] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20110731
2018-11-22 08:04:44.922 INFO 2123 --- [ol-5-thread-178] o.ihtsdo.otf.snomedboot.ReleaseImporter : 11 reference set members read from sct2_sRefset_OWLAxiomFull_INT_20180731.txt
2018-11-22 08:04:44.922 INFO 2123 --- [ol-5-thread-179] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20110731
2018-11-22 08:04:44.922 INFO 2123 --- [ol-5-thread-179] o.ihtsdo.otf.snomedboot.ReleaseImporter : 7 reference set members read from sct2_sRefset_OWLOntologyFull_INT_20180731.txt
2018-11-22 08:04:44.922 INFO 2123 --- [ol-5-thread-178] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20110731
2018-11-22 08:04:44.922 INFO 2123 --- [ol-5-thread-178] o.ihtsdo.otf.snomedboot.ReleaseImporter : 4 reference set members read from der2_ciRefset_DescriptionTypeFull_INT_20180731.txt
2018-11-22 08:04:44.922 INFO 2123 --- [ol-5-thread-181] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20110731
2018-11-22 08:04:44.922 INFO 2123 --- [ol-5-thread-176] o.ihtsdo.otf.snomedboot.ReleaseImporter : 167 reference set members read from der2_cciRefset_RefsetDescriptorFull_INT_20180731.txt
2018-11-22 08:04:44.923 INFO 2123 --- [ol-5-thread-179] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20110731
2018-11-22 08:04:44.923 INFO 2123 --- [ol-5-thread-176] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20110731
2018-11-22 08:04:44.923 INFO 2123 --- [ol-5-thread-175] o.ihtsdo.otf.snomedboot.ReleaseImporter : 144 reference set members read from der2_ssccRefset_MRCMAttributeRangeFull_INT_20180731.txt
2018-11-22 08:04:44.924 INFO 2123 --- [ol-5-thread-178] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20110731
2018-11-22 08:04:44.926 INFO 2123 --- [ol-5-thread-178] o.ihtsdo.otf.snomedboot.ReleaseImporter : 36 reference set members read from der2_sssssssRefset_MRCMDomainFull_INT_20180731.txt
2018-11-22 08:04:44.926 INFO 2123 --- [ol-5-thread-178] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20110731
2018-11-22 08:04:44.930 INFO 2123 --- [ol-5-thread-175] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20110731
2018-11-22 08:04:44.946 INFO 2123 --- [ol-5-thread-182] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20110731
2018-11-22 08:04:44.946 INFO 2123 --- [ol-5-thread-183] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20110731
2018-11-22 08:04:44.958 INFO 2123 --- [ol-5-thread-184] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20110731
2018-11-22 08:04:44.959 INFO 2123 --- [ol-5-thread-184] o.ihtsdo.otf.snomedboot.ReleaseImporter : 56 reference set members read from der2_ssRefset_ModuleDependencyFull_INT_20180731.txt
2018-11-22 08:04:44.959 INFO 2123 --- [ol-5-thread-183] o.ihtsdo.otf.snomedboot.ReleaseImporter : 154 reference set members read from der2_cissccRefset_MRCMAttributeDomainFull_INT_20180731.txt
2018-11-22 08:04:44.959 INFO 2123 --- [ol-5-thread-182] o.ihtsdo.otf.snomedboot.ReleaseImporter : 3 reference set members read from der2_cRefset_MRCMModuleScopeFull_INT_20180731.txt
2018-11-22 08:04:44.959 INFO 2123 --- [ol-5-thread-185] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20110731
2018-11-22 08:04:44.991 INFO 2123 --- [ol-5-thread-181] o.ihtsdo.otf.snomedboot.ReleaseImporter : 19870 reference set members read from der2_Refset_SimpleFull_INT_20180731.txt
2018-11-22 08:04:45.404 INFO 2123 --- [ol-5-thread-179] o.ihtsdo.otf.snomedboot.ReleaseImporter : 167899 reference set members read from der2_cRefset_AssociationFull_INT_20180731.txt
2018-11-22 08:04:46.044 INFO 2123 --- [ol-5-thread-175] o.ihtsdo.otf.snomedboot.ReleaseImporter : 224459 reference set members read from der2_iisssccRefset_ExtendedMapFull_INT_20180731.txt
2018-11-22 08:04:46.370 INFO 2123 --- [ol-5-thread-185] o.ihtsdo.otf.snomedboot.ReleaseImporter : 484195 reference set members read from der2_sRefset_SimpleMapFull_INT_20180731.txt
2018-11-22 08:04:46.671 INFO 2123 --- [ol-5-thread-176] i.k.elasticvc.api.ComponentService : Saving batch of 2385 Concepts
2018-11-22 08:04:47.099 INFO 2123 --- [ol-5-thread-176] i.k.elasticvc.api.ComponentService : Saving batch of 1015 Descriptions
2018-11-22 08:04:47.430 INFO 2123 --- [ol-5-thread-176] i.k.elasticvc.api.ComponentService : Saving batch of 4398 Relationships
2018-11-22 08:04:48.349 INFO 2123 --- [ol-5-thread-176] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 08:04:50.134 INFO 2123 --- [ol-5-thread-178] o.ihtsdo.otf.snomedboot.ReleaseImporter : 665802 reference set members read from der2_cRefset_AttributeValueFull_INT_20180731.txt
2018-11-22 08:04:53.227 INFO 2123 --- [ol-5-thread-176] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 08:04:57.007 INFO 2123 --- [ol-5-thread-176] o.ihtsdo.otf.snomedboot.ReleaseImporter : 3207060 reference set members read from der2_cRefset_LanguageFull-en_INT_20180731.txt
2018-11-22 08:04:57.948 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 4743 ReferenceSetMembers
2018-11-22 08:04:59.454 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: started
2018-11-22 08:04:59.454 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: get branch criteria took 0.0 seconds
2018-11-22 08:05:00.304 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed is-a relationships. took 0.85 seconds
2018-11-22 08:05:00.306 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed axiom is-a fragments. took 0.002 seconds
2018-11-22 08:05:00.306 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : Performing incremental update of stated semantic index
2018-11-22 08:05:01.532 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect existingAncestors from QueryConcept. took 1.226 seconds
2018-11-22 08:05:02.015 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect existingDescendants from QueryConcept. took 0.483 seconds
2018-11-22 08:05:03.468 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Build existing nodes from Relationships. took 1.453 seconds
2018-11-22 08:05:03.624 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Build existing nodes from Axioms. took 0.156 seconds
2018-11-22 08:05:03.624 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : 7980 existing nodes loaded.
2018-11-22 08:05:03.862 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Update graph using changed relationships. took 0.238 seconds
2018-11-22 08:05:03.864 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Update graph using changed axioms. took 0.002 seconds
2018-11-22 08:05:04.760 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect existingDescendants from QueryConcept. took 0.896 seconds
2018-11-22 08:05:04.767 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 6751 QueryConcepts
2018-11-22 08:05:06.565 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Save updated QueryConcepts took 1.805 seconds
2018-11-22 08:05:06.565 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: total took 7.111 seconds
2018-11-22 08:05:06.565 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: started
2018-11-22 08:05:06.565 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: get branch criteria took 0.0 seconds
2018-11-22 08:05:06.786 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect changed is-a relationships. took 0.221 seconds
2018-11-22 08:05:06.786 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : Performing incremental update of inferred semantic index
2018-11-22 08:05:07.298 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect existingAncestors from QueryConcept. took 0.512 seconds
2018-11-22 08:05:08.291 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect existingDescendants from QueryConcept. took 0.993 seconds
2018-11-22 08:05:11.010 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Build existing nodes from Relationships. took 2.719 seconds
2018-11-22 08:05:11.010 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : 19495 existing nodes loaded.
2018-11-22 08:05:12.321 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Update graph using changed relationships. took 1.311 seconds
2018-11-22 08:05:15.638 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect existingDescendants from QueryConcept. took 3.317 seconds
2018-11-22 08:05:15.715 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 08:05:27.363 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 6171 QueryConcepts
2018-11-22 08:05:39.761 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Save updated QueryConcepts took 24.123 seconds
2018-11-22 08:05:39.761 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: total took 33.196 seconds
2018-11-22 08:05:39.776 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Completed commit on MAIN at 1542873859480
2018-11-22 08:05:39.780 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Creating Code System version - Code System: SNOMEDCT, Version: 2011-07-31, Release Branch: MAIN/2011-07-31
2018-11-22 08:05:39.780 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Versioning content...
2018-11-22 08:05:39.794 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Open commit on MAIN at 1542873939794
2018-11-22 08:05:39.913 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: started
2018-11-22 08:05:39.913 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: get branch criteria took 0.0 seconds
2018-11-22 08:05:39.955 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed is-a relationships. took 0.042 seconds
2018-11-22 08:05:40.643 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed axiom is-a fragments. took 0.688 seconds
2018-11-22 08:05:40.648 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: started
2018-11-22 08:05:40.648 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: get branch criteria took 0.0 seconds
2018-11-22 08:05:40.654 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect changed is-a relationships. took 0.006 seconds
2018-11-22 08:05:40.678 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Completed commit on MAIN at 1542873939794
2018-11-22 08:05:40.678 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Creating version branch content...
2018-11-22 08:05:40.681 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Creating branch Branch{path=MAIN/2011-07-31, base=1542873939794, head=1542873940678, start=1542873940678, end=null}
2018-11-22 08:05:40.688 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Persisting Code System Version...
2018-11-22 08:05:40.698 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Versioning complete.
2018-11-22 08:05:40.709 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Open commit on MAIN at 1542873940709
2018-11-22 08:05:40.709 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Loading release delta 20120131
2018-11-22 08:05:40.709 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading concepts for release 20120131
2018-11-22 08:05:41.649 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : 581635 concepts read from sct2_Concept_Full_INT_20180731.txt
2018-11-22 08:05:41.649 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : includedReferenceSetPathPatterns: []
2018-11-22 08:05:41.649 INFO 2123 --- [ol-5-thread-178] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading relationships for release 20120131
2018-11-22 08:05:41.649 INFO 2123 --- [ol-5-thread-176] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading relationships for release 20120131
2018-11-22 08:05:41.657 INFO 2123 --- [ol-5-thread-185] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading descriptions for release 20120131
2018-11-22 08:05:41.667 INFO 2123 --- [ol-5-thread-175] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading descriptions for release 20120131
2018-11-22 08:05:41.755 INFO 2123 --- [ol-5-thread-175] o.ihtsdo.otf.snomedboot.ReleaseImporter : 5151 descriptions read from sct2_TextDefinition_Full-en_INT_20180731.txt
2018-11-22 08:05:45.247 INFO 2123 --- [ol-5-thread-178] o.ihtsdo.otf.snomedboot.ReleaseImporter : 1130957 relationships read from sct2_StatedRelationship_Full_INT_20180731.txt
2018-11-22 08:05:48.480 INFO 2123 --- [ol-5-thread-185] o.ihtsdo.otf.snomedboot.ReleaseImporter : 2513952 descriptions read from sct2_Description_Full-en_INT_20180731.txt
2018-11-22 08:05:50.604 INFO 2123 --- [ol-5-thread-176] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 08:05:56.248 INFO 2123 --- [ol-5-thread-176] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 08:05:59.780 INFO 2123 --- [ol-5-thread-176] o.ihtsdo.otf.snomedboot.ReleaseImporter : 5112181 relationships read from sct2_Relationship_Full_INT_20180731.txt
2018-11-22 08:05:59.780 INFO 2123 --- [ol-5-thread-176] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20120131
2018-11-22 08:05:59.780 INFO 2123 --- [ol-5-thread-178] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20120131
2018-11-22 08:05:59.780 INFO 2123 --- [ol-5-thread-185] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20120131
2018-11-22 08:05:59.780 INFO 2123 --- [ol-5-thread-185] o.ihtsdo.otf.snomedboot.ReleaseImporter : 11 reference set members read from sct2_sRefset_OWLAxiomFull_INT_20180731.txt
2018-11-22 08:05:59.780 INFO 2123 --- [ol-5-thread-175] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20120131
2018-11-22 08:05:59.780 INFO 2123 --- [ol-5-thread-175] o.ihtsdo.otf.snomedboot.ReleaseImporter : 7 reference set members read from sct2_sRefset_OWLOntologyFull_INT_20180731.txt
2018-11-22 08:05:59.780 INFO 2123 --- [ol-5-thread-185] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20120131
2018-11-22 08:05:59.781 INFO 2123 --- [ol-5-thread-185] o.ihtsdo.otf.snomedboot.ReleaseImporter : 4 reference set members read from der2_ciRefset_DescriptionTypeFull_INT_20180731.txt
2018-11-22 08:05:59.781 INFO 2123 --- [ol-5-thread-186] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20120131
2018-11-22 08:05:59.781 INFO 2123 --- [ol-5-thread-178] o.ihtsdo.otf.snomedboot.ReleaseImporter : 167 reference set members read from der2_cciRefset_RefsetDescriptorFull_INT_20180731.txt
2018-11-22 08:05:59.781 INFO 2123 --- [ol-5-thread-175] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20120131
2018-11-22 08:05:59.781 INFO 2123 --- [ol-5-thread-178] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20120131
2018-11-22 08:05:59.781 INFO 2123 --- [ol-5-thread-176] o.ihtsdo.otf.snomedboot.ReleaseImporter : 144 reference set members read from der2_ssccRefset_MRCMAttributeRangeFull_INT_20180731.txt
2018-11-22 08:05:59.782 INFO 2123 --- [ol-5-thread-185] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20120131
2018-11-22 08:05:59.784 INFO 2123 --- [ol-5-thread-185] o.ihtsdo.otf.snomedboot.ReleaseImporter : 36 reference set members read from der2_sssssssRefset_MRCMDomainFull_INT_20180731.txt
2018-11-22 08:05:59.786 INFO 2123 --- [ol-5-thread-187] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20120131
2018-11-22 08:05:59.786 INFO 2123 --- [ol-5-thread-187] o.ihtsdo.otf.snomedboot.ReleaseImporter : 3 reference set members read from der2_cRefset_MRCMModuleScopeFull_INT_20180731.txt
2018-11-22 08:05:59.789 INFO 2123 --- [ol-5-thread-176] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20120131
2018-11-22 08:05:59.790 INFO 2123 --- [ol-5-thread-176] o.ihtsdo.otf.snomedboot.ReleaseImporter : 56 reference set members read from der2_ssRefset_ModuleDependencyFull_INT_20180731.txt
2018-11-22 08:05:59.790 INFO 2123 --- [ol-5-thread-187] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20120131
2018-11-22 08:05:59.790 INFO 2123 --- [ol-5-thread-189] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20120131
2018-11-22 08:05:59.791 INFO 2123 --- [ol-5-thread-185] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20120131
2018-11-22 08:05:59.802 INFO 2123 --- [ol-5-thread-188] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20120131
2018-11-22 08:05:59.803 INFO 2123 --- [ol-5-thread-188] o.ihtsdo.otf.snomedboot.ReleaseImporter : 154 reference set members read from der2_cissccRefset_MRCMAttributeDomainFull_INT_20180731.txt
2018-11-22 08:05:59.861 INFO 2123 --- [ol-5-thread-186] o.ihtsdo.otf.snomedboot.ReleaseImporter : 19870 reference set members read from der2_Refset_SimpleFull_INT_20180731.txt
2018-11-22 08:06:00.265 INFO 2123 --- [ol-5-thread-175] o.ihtsdo.otf.snomedboot.ReleaseImporter : 167899 reference set members read from der2_cRefset_AssociationFull_INT_20180731.txt
2018-11-22 08:06:01.113 INFO 2123 --- [ol-5-thread-185] o.ihtsdo.otf.snomedboot.ReleaseImporter : 224459 reference set members read from der2_iisssccRefset_ExtendedMapFull_INT_20180731.txt
2018-11-22 08:06:01.300 INFO 2123 --- [ol-5-thread-189] o.ihtsdo.otf.snomedboot.ReleaseImporter : 484195 reference set members read from der2_sRefset_SimpleMapFull_INT_20180731.txt
2018-11-22 08:06:01.820 INFO 2123 --- [ol-5-thread-187] o.ihtsdo.otf.snomedboot.ReleaseImporter : 665802 reference set members read from der2_cRefset_AttributeValueFull_INT_20180731.txt
2018-11-22 08:06:03.691 INFO 2123 --- [ol-5-thread-178] i.k.elasticvc.api.ComponentService : Saving batch of 458 Concepts
2018-11-22 08:06:04.693 INFO 2123 --- [ol-5-thread-178] i.k.elasticvc.api.ComponentService : Saving batch of 3944 Descriptions
2018-11-22 08:06:05.360 INFO 2123 --- [ol-5-thread-178] i.k.elasticvc.api.ComponentService : Saving batch of 1282 Relationships
2018-11-22 08:06:06.118 INFO 2123 --- [ol-5-thread-178] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 08:06:09.503 INFO 2123 --- [ol-5-thread-178] o.ihtsdo.otf.snomedboot.ReleaseImporter : 3207060 reference set members read from der2_cRefset_LanguageFull-en_INT_20180731.txt
2018-11-22 08:06:09.708 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 3614 ReferenceSetMembers
2018-11-22 08:06:10.475 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: started
2018-11-22 08:06:10.476 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: get branch criteria took 0.001 seconds
2018-11-22 08:06:10.511 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed is-a relationships. took 0.035 seconds
2018-11-22 08:06:10.514 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed axiom is-a fragments. took 0.002 seconds
2018-11-22 08:06:10.514 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : Performing incremental update of stated semantic index
2018-11-22 08:06:10.746 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect existingAncestors from QueryConcept. took 0.233 seconds
2018-11-22 08:06:11.074 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect existingDescendants from QueryConcept. took 0.328 seconds
2018-11-22 08:06:11.509 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Build existing nodes from Relationships. took 0.435 seconds
2018-11-22 08:06:11.639 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Build existing nodes from Axioms. took 0.13 seconds
2018-11-22 08:06:11.639 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : 5606 existing nodes loaded.
2018-11-22 08:06:11.730 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Update graph using changed relationships. took 0.091 seconds
2018-11-22 08:06:11.731 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Update graph using changed axioms. took 0.001 seconds
2018-11-22 08:06:12.271 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect existingDescendants from QueryConcept. took 0.54 seconds
2018-11-22 08:06:12.273 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 4100 QueryConcepts
2018-11-22 08:06:13.693 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Save updated QueryConcepts took 1.422 seconds
2018-11-22 08:06:13.693 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: total took 3.218 seconds
2018-11-22 08:06:13.693 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: started
2018-11-22 08:06:13.693 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: get branch criteria took 0.0 seconds
2018-11-22 08:06:13.831 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect changed is-a relationships. took 0.138 seconds
2018-11-22 08:06:13.831 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : Performing incremental update of inferred semantic index
2018-11-22 08:06:14.319 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect existingAncestors from QueryConcept. took 0.488 seconds
2018-11-22 08:06:15.507 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect existingDescendants from QueryConcept. took 1.188 seconds
2018-11-22 08:06:18.353 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Build existing nodes from Relationships. took 2.846 seconds
2018-11-22 08:06:18.354 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : 20518 existing nodes loaded.
2018-11-22 08:06:18.704 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Update graph using changed relationships. took 0.351 seconds
2018-11-22 08:06:21.163 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect existingDescendants from QueryConcept. took 2.459 seconds
2018-11-22 08:06:21.172 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 08:06:31.034 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 4337 QueryConcepts
2018-11-22 08:06:36.794 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Save updated QueryConcepts took 15.631 seconds
2018-11-22 08:06:36.794 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: total took 23.101 seconds
2018-11-22 08:06:36.961 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Completed commit on MAIN at 1542873940709
2018-11-22 08:06:36.964 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Creating Code System version - Code System: SNOMEDCT, Version: 2012-01-31, Release Branch: MAIN/2012-01-31
2018-11-22 08:06:36.964 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Versioning content...
2018-11-22 08:06:36.976 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Open commit on MAIN at 1542873996976
2018-11-22 08:06:37.029 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: started
2018-11-22 08:06:37.029 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: get branch criteria took 0.0 seconds
2018-11-22 08:06:37.031 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed is-a relationships. took 0.002 seconds
2018-11-22 08:06:37.033 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed axiom is-a fragments. took 0.002 seconds
2018-11-22 08:06:37.035 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: started
2018-11-22 08:06:37.035 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: get branch criteria took 0.0 seconds
2018-11-22 08:06:37.038 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect changed is-a relationships. took 0.003 seconds
2018-11-22 08:06:37.692 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Completed commit on MAIN at 1542873996976
2018-11-22 08:06:37.693 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Creating version branch content...
2018-11-22 08:06:37.695 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Creating branch Branch{path=MAIN/2012-01-31, base=1542873996976, head=1542873997693, start=1542873997693, end=null}
2018-11-22 08:06:37.703 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Persisting Code System Version...
2018-11-22 08:06:37.711 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Versioning complete.
2018-11-22 08:06:37.721 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Open commit on MAIN at 1542873997721
2018-11-22 08:06:37.721 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Loading release delta 20120731
2018-11-22 08:06:37.721 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading concepts for release 20120731
2018-11-22 08:06:38.495 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : 581635 concepts read from sct2_Concept_Full_INT_20180731.txt
2018-11-22 08:06:38.495 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : includedReferenceSetPathPatterns: []
2018-11-22 08:06:38.495 INFO 2123 --- [ol-5-thread-178] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading relationships for release 20120731
2018-11-22 08:06:38.495 INFO 2123 --- [ol-5-thread-187] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading relationships for release 20120731
2018-11-22 08:06:38.498 INFO 2123 --- [ol-5-thread-189] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading descriptions for release 20120731
2018-11-22 08:06:38.502 INFO 2123 --- [ol-5-thread-185] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading descriptions for release 20120731
2018-11-22 08:06:38.539 INFO 2123 --- [ol-5-thread-185] o.ihtsdo.otf.snomedboot.ReleaseImporter : 5151 descriptions read from sct2_TextDefinition_Full-en_INT_20180731.txt
2018-11-22 08:06:41.022 INFO 2123 --- [ol-5-thread-187] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 08:06:45.331 INFO 2123 --- [ol-5-thread-189] o.ihtsdo.otf.snomedboot.ReleaseImporter : 2513952 descriptions read from sct2_Description_Full-en_INT_20180731.txt
2018-11-22 08:06:46.156 INFO 2123 --- [ol-5-thread-187] o.ihtsdo.otf.snomedboot.ReleaseImporter : 1130957 relationships read from sct2_StatedRelationship_Full_INT_20180731.txt
2018-11-22 08:06:51.118 INFO 2123 --- [ol-5-thread-178] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 08:06:54.680 INFO 2123 --- [ol-5-thread-178] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 08:06:59.121 INFO 2123 --- [ol-5-thread-178] o.ihtsdo.otf.snomedboot.ReleaseImporter : 5112181 relationships read from sct2_Relationship_Full_INT_20180731.txt
2018-11-22 08:06:59.121 INFO 2123 --- [ol-5-thread-178] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20120731
2018-11-22 08:06:59.121 INFO 2123 --- [ol-5-thread-187] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20120731
2018-11-22 08:06:59.122 INFO 2123 --- [ol-5-thread-187] o.ihtsdo.otf.snomedboot.ReleaseImporter : 11 reference set members read from sct2_sRefset_OWLAxiomFull_INT_20180731.txt
2018-11-22 08:06:59.122 INFO 2123 --- [ol-5-thread-189] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20120731
2018-11-22 08:06:59.122 INFO 2123 --- [ol-5-thread-187] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20120731
2018-11-22 08:06:59.122 INFO 2123 --- [ol-5-thread-189] o.ihtsdo.otf.snomedboot.ReleaseImporter : 167 reference set members read from der2_cciRefset_RefsetDescriptorFull_INT_20180731.txt
2018-11-22 08:06:59.122 INFO 2123 --- [ol-5-thread-175] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20120731
2018-11-22 08:06:59.122 INFO 2123 --- [ol-5-thread-178] o.ihtsdo.otf.snomedboot.ReleaseImporter : 144 reference set members read from der2_ssccRefset_MRCMAttributeRangeFull_INT_20180731.txt
2018-11-22 08:06:59.122 INFO 2123 --- [ol-5-thread-186] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20120731
2018-11-22 08:06:59.122 INFO 2123 --- [ol-5-thread-186] o.ihtsdo.otf.snomedboot.ReleaseImporter : 4 reference set members read from der2_ciRefset_DescriptionTypeFull_INT_20180731.txt
2018-11-22 08:06:59.122 INFO 2123 --- [ol-5-thread-188] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20120731
2018-11-22 08:06:59.122 INFO 2123 --- [ol-5-thread-188] o.ihtsdo.otf.snomedboot.ReleaseImporter : 3 reference set members read from der2_cRefset_MRCMModuleScopeFull_INT_20180731.txt
2018-11-22 08:06:59.122 INFO 2123 --- [ol-5-thread-176] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20120731
2018-11-22 08:06:59.126 INFO 2123 --- [ol-5-thread-185] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20120731
2018-11-22 08:06:59.126 INFO 2123 --- [ol-5-thread-188] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20120731
2018-11-22 08:06:59.126 INFO 2123 --- [ol-5-thread-178] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20120731
2018-11-22 08:06:59.126 INFO 2123 --- [ol-5-thread-185] o.ihtsdo.otf.snomedboot.ReleaseImporter : 7 reference set members read from sct2_sRefset_OWLOntologyFull_INT_20180731.txt
2018-11-22 08:06:59.126 INFO 2123 --- [ol-5-thread-189] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20120731
2018-11-22 08:06:59.127 INFO 2123 --- [ol-5-thread-178] o.ihtsdo.otf.snomedboot.ReleaseImporter : 56 reference set members read from der2_ssRefset_ModuleDependencyFull_INT_20180731.txt
2018-11-22 08:06:59.127 INFO 2123 --- [ol-5-thread-191] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20120731
2018-11-22 08:06:59.127 INFO 2123 --- [ol-5-thread-191] o.ihtsdo.otf.snomedboot.ReleaseImporter : 154 reference set members read from der2_cissccRefset_MRCMAttributeDomainFull_INT_20180731.txt
2018-11-22 08:06:59.127 INFO 2123 --- [ol-5-thread-186] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20120731
2018-11-22 08:06:59.135 INFO 2123 --- [ol-5-thread-190] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20120731
2018-11-22 08:06:59.137 INFO 2123 --- [ol-5-thread-190] o.ihtsdo.otf.snomedboot.ReleaseImporter : 36 reference set members read from der2_sssssssRefset_MRCMDomainFull_INT_20180731.txt
2018-11-22 08:06:59.217 INFO 2123 --- [ol-5-thread-175] o.ihtsdo.otf.snomedboot.ReleaseImporter : 19870 reference set members read from der2_Refset_SimpleFull_INT_20180731.txt
2018-11-22 08:06:59.798 INFO 2123 --- [ol-5-thread-187] o.ihtsdo.otf.snomedboot.ReleaseImporter : 167899 reference set members read from der2_cRefset_AssociationFull_INT_20180731.txt
2018-11-22 08:07:00.473 INFO 2123 --- [ol-5-thread-186] o.ihtsdo.otf.snomedboot.ReleaseImporter : 224459 reference set members read from der2_iisssccRefset_ExtendedMapFull_INT_20180731.txt
2018-11-22 08:07:00.771 INFO 2123 --- [ol-5-thread-189] o.ihtsdo.otf.snomedboot.ReleaseImporter : 484195 reference set members read from der2_sRefset_SimpleMapFull_INT_20180731.txt
2018-11-22 08:07:01.208 INFO 2123 --- [ol-5-thread-188] o.ihtsdo.otf.snomedboot.ReleaseImporter : 665802 reference set members read from der2_cRefset_AttributeValueFull_INT_20180731.txt
2018-11-22 08:07:03.896 INFO 2123 --- [ol-5-thread-176] i.k.elasticvc.api.ComponentService : Saving batch of 1419 Concepts
2018-11-22 08:07:04.225 INFO 2123 --- [ol-5-thread-176] i.k.elasticvc.api.ComponentService : Saving batch of 3537 Descriptions
2018-11-22 08:07:05.085 INFO 2123 --- [ol-5-thread-176] i.k.elasticvc.api.ComponentService : Saving batch of 1169 Relationships
2018-11-22 08:07:05.873 INFO 2123 --- [ol-5-thread-176] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 08:07:08.996 INFO 2123 --- [ol-5-thread-176] o.ihtsdo.otf.snomedboot.ReleaseImporter : 3207060 reference set members read from der2_cRefset_LanguageFull-en_INT_20180731.txt
2018-11-22 08:07:09.163 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 2313 ReferenceSetMembers
2018-11-22 08:07:09.720 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: started
2018-11-22 08:07:09.720 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: get branch criteria took 0.0 seconds
2018-11-22 08:07:09.822 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed is-a relationships. took 0.102 seconds
2018-11-22 08:07:09.824 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed axiom is-a fragments. took 0.002 seconds
2018-11-22 08:07:09.824 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : Performing incremental update of stated semantic index
2018-11-22 08:07:10.021 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect existingAncestors from QueryConcept. took 0.197 seconds
2018-11-22 08:07:10.504 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect existingDescendants from QueryConcept. took 0.483 seconds
2018-11-22 08:07:10.982 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Build existing nodes from Relationships. took 0.478 seconds
2018-11-22 08:07:11.173 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Build existing nodes from Axioms. took 0.191 seconds
2018-11-22 08:07:11.173 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : 6959 existing nodes loaded.
2018-11-22 08:07:11.347 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Update graph using changed relationships. took 0.174 seconds
2018-11-22 08:07:11.348 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Update graph using changed axioms. took 0.001 seconds
2018-11-22 08:07:12.176 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect existingDescendants from QueryConcept. took 0.828 seconds
2018-11-22 08:07:12.181 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 5632 QueryConcepts
2018-11-22 08:07:14.232 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Save updated QueryConcepts took 2.056 seconds
2018-11-22 08:07:14.232 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: total took 4.512 seconds
2018-11-22 08:07:14.232 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: started
2018-11-22 08:07:14.232 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: get branch criteria took 0.0 seconds
2018-11-22 08:07:14.373 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect changed is-a relationships. took 0.141 seconds
2018-11-22 08:07:14.373 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : Performing incremental update of inferred semantic index
2018-11-22 08:07:14.925 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect existingAncestors from QueryConcept. took 0.552 seconds
2018-11-22 08:07:15.817 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect existingDescendants from QueryConcept. took 0.892 seconds
2018-11-22 08:07:18.084 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Build existing nodes from Relationships. took 2.267 seconds
2018-11-22 08:07:18.084 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : 17587 existing nodes loaded.
2018-11-22 08:07:18.465 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Update graph using changed relationships. took 0.381 seconds
2018-11-22 08:07:20.558 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect existingDescendants from QueryConcept. took 2.093 seconds
2018-11-22 08:07:20.568 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 10000 QueryConcepts
2018-11-22 08:07:30.926 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 1818 QueryConcepts
2018-11-22 08:07:34.664 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Save updated QueryConcepts took 14.106 seconds
2018-11-22 08:07:34.664 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: total took 20.432 seconds
2018-11-22 08:07:34.678 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Completed commit on MAIN at 1542873997721
2018-11-22 08:07:34.681 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Creating Code System version - Code System: SNOMEDCT, Version: 2012-07-31, Release Branch: MAIN/2012-07-31
2018-11-22 08:07:34.681 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Versioning content...
2018-11-22 08:07:34.690 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Open commit on MAIN at 1542874054690
2018-11-22 08:07:34.726 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: started
2018-11-22 08:07:34.726 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: get branch criteria took 0.0 seconds
2018-11-22 08:07:34.728 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed is-a relationships. took 0.002 seconds
2018-11-22 08:07:34.729 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed axiom is-a fragments. took 0.001 seconds
2018-11-22 08:07:34.731 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: started
2018-11-22 08:07:34.731 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: get branch criteria took 0.0 seconds
2018-11-22 08:07:34.732 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect changed is-a relationships. took 0.001 seconds
2018-11-22 08:07:34.742 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Completed commit on MAIN at 1542874054690
2018-11-22 08:07:34.742 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Creating version branch content...
2018-11-22 08:07:34.747 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Creating branch Branch{path=MAIN/2012-07-31, base=1542874054690, head=1542874054742, start=1542874054742, end=null}
2018-11-22 08:07:34.753 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Persisting Code System Version...
2018-11-22 08:07:34.764 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Versioning complete.
2018-11-22 08:07:34.773 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Open commit on MAIN at 1542874054773
2018-11-22 08:07:34.773 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Loading release delta 20130131
2018-11-22 08:07:34.773 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading concepts for release 20130131
2018-11-22 08:07:35.349 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : 581635 concepts read from sct2_Concept_Full_INT_20180731.txt
2018-11-22 08:07:35.349 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : includedReferenceSetPathPatterns: []
2018-11-22 08:07:35.349 INFO 2123 --- [ol-5-thread-188] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading relationships for release 20130131
2018-11-22 08:07:35.349 INFO 2123 --- [ol-5-thread-176] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading relationships for release 20130131
2018-11-22 08:07:35.350 INFO 2123 --- [ol-5-thread-189] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading descriptions for release 20130131
2018-11-22 08:07:35.354 INFO 2123 --- [ol-5-thread-186] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading descriptions for release 20130131
2018-11-22 08:07:35.390 INFO 2123 --- [ol-5-thread-186] o.ihtsdo.otf.snomedboot.ReleaseImporter : 5151 descriptions read from sct2_TextDefinition_Full-en_INT_20180731.txt
2018-11-22 08:07:37.636 INFO 2123 --- [ol-5-thread-188] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 08:07:42.188 INFO 2123 --- [ol-5-thread-188] o.ihtsdo.otf.snomedboot.ReleaseImporter : 1130957 relationships read from sct2_StatedRelationship_Full_INT_20180731.txt
2018-11-22 08:07:42.270 INFO 2123 --- [ol-5-thread-189] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 08:07:45.318 INFO 2123 --- [ol-5-thread-189] o.ihtsdo.otf.snomedboot.ReleaseImporter : 2513952 descriptions read from sct2_Description_Full-en_INT_20180731.txt
2018-11-22 08:07:48.750 INFO 2123 --- [ol-5-thread-176] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 08:07:52.547 INFO 2123 --- [ol-5-thread-176] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 08:07:55.200 INFO 2123 --- [ol-5-thread-176] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 08:07:57.732 INFO 2123 --- [ol-5-thread-176] o.ihtsdo.otf.snomedboot.ReleaseImporter : 5112181 relationships read from sct2_Relationship_Full_INT_20180731.txt
2018-11-22 08:07:57.732 INFO 2123 --- [ol-5-thread-188] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20130131
2018-11-22 08:07:57.732 INFO 2123 --- [ol-5-thread-186] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20130131
2018-11-22 08:07:57.732 INFO 2123 --- [ol-5-thread-175] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20130131
2018-11-22 08:07:57.732 INFO 2123 --- [ol-5-thread-188] o.ihtsdo.otf.snomedboot.ReleaseImporter : 11 reference set members read from sct2_sRefset_OWLAxiomFull_INT_20180731.txt
2018-11-22 08:07:57.732 INFO 2123 --- [ol-5-thread-190] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20130131
2018-11-22 08:07:57.732 INFO 2123 --- [ol-5-thread-190] o.ihtsdo.otf.snomedboot.ReleaseImporter : 4 reference set members read from der2_ciRefset_DescriptionTypeFull_INT_20180731.txt
2018-11-22 08:07:57.733 INFO 2123 --- [ol-5-thread-186] o.ihtsdo.otf.snomedboot.ReleaseImporter : 167 reference set members read from der2_cciRefset_RefsetDescriptorFull_INT_20180731.txt
2018-11-22 08:07:57.733 INFO 2123 --- [ol-5-thread-187] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20130131
2018-11-22 08:07:57.733 INFO 2123 --- [ol-5-thread-187] o.ihtsdo.otf.snomedboot.ReleaseImporter : 7 reference set members read from sct2_sRefset_OWLOntologyFull_INT_20180731.txt
2018-11-22 08:07:57.733 INFO 2123 --- [ol-5-thread-191] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20130131
2018-11-22 08:07:57.733 INFO 2123 --- [ol-5-thread-191] o.ihtsdo.otf.snomedboot.ReleaseImporter : 3 reference set members read from der2_cRefset_MRCMModuleScopeFull_INT_20180731.txt
2018-11-22 08:07:57.733 INFO 2123 --- [ol-5-thread-178] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20130131
2018-11-22 08:07:57.732 INFO 2123 --- [ol-5-thread-189] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20130131
2018-11-22 08:07:57.739 INFO 2123 --- [ol-5-thread-189] o.ihtsdo.otf.snomedboot.ReleaseImporter : 144 reference set members read from der2_ssccRefset_MRCMAttributeRangeFull_INT_20180731.txt
2018-11-22 08:07:57.742 INFO 2123 --- [ol-5-thread-185] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20130131
2018-11-22 08:07:57.744 INFO 2123 --- [ol-5-thread-185] o.ihtsdo.otf.snomedboot.ReleaseImporter : 36 reference set members read from der2_sssssssRefset_MRCMDomainFull_INT_20180731.txt
2018-11-22 08:07:57.745 INFO 2123 --- [ol-5-thread-189] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20130131
2018-11-22 08:07:57.745 INFO 2123 --- [ol-5-thread-185] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20130131
2018-11-22 08:07:57.750 INFO 2123 --- [ol-5-thread-191] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20130131
2018-11-22 08:07:57.750 INFO 2123 --- [ol-5-thread-191] o.ihtsdo.otf.snomedboot.ReleaseImporter : 56 reference set members read from der2_ssRefset_ModuleDependencyFull_INT_20180731.txt
2018-11-22 08:07:57.750 INFO 2123 --- [ol-5-thread-187] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20130131
2018-11-22 08:07:57.754 INFO 2123 --- [ol-5-thread-176] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20130131
2018-11-22 08:07:57.755 INFO 2123 --- [ol-5-thread-176] o.ihtsdo.otf.snomedboot.ReleaseImporter : 154 reference set members read from der2_cissccRefset_MRCMAttributeDomainFull_INT_20180731.txt
2018-11-22 08:07:57.758 INFO 2123 --- [ol-5-thread-192] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20130131
2018-11-22 08:07:57.916 INFO 2123 --- [ol-5-thread-175] o.ihtsdo.otf.snomedboot.ReleaseImporter : 19870 reference set members read from der2_Refset_SimpleFull_INT_20180731.txt
2018-11-22 08:07:58.558 INFO 2123 --- [ol-5-thread-192] o.ihtsdo.otf.snomedboot.ReleaseImporter : 167899 reference set members read from der2_cRefset_AssociationFull_INT_20180731.txt
2018-11-22 08:07:59.365 INFO 2123 --- [ol-5-thread-187] o.ihtsdo.otf.snomedboot.ReleaseImporter : 484195 reference set members read from der2_sRefset_SimpleMapFull_INT_20180731.txt
2018-11-22 08:07:59.454 INFO 2123 --- [ol-5-thread-189] o.ihtsdo.otf.snomedboot.ReleaseImporter : 224459 reference set members read from der2_iisssccRefset_ExtendedMapFull_INT_20180731.txt
2018-11-22 08:08:00.317 INFO 2123 --- [ol-5-thread-185] i.k.elasticvc.api.ComponentService : Saving batch of 1992 Concepts
2018-11-22 08:08:01.497 INFO 2123 --- [ol-5-thread-185] i.k.elasticvc.api.ComponentService : Saving batch of 629 Descriptions
2018-11-22 08:08:03.387 INFO 2123 --- [ol-5-thread-185] i.k.elasticvc.api.ComponentService : Saving batch of 1272 Relationships
2018-11-22 08:08:04.436 INFO 2123 --- [ol-5-thread-185] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 08:08:05.969 INFO 2123 --- [ol-5-thread-185] o.ihtsdo.otf.snomedboot.ReleaseImporter : 665802 reference set members read from der2_cRefset_AttributeValueFull_INT_20180731.txt
2018-11-22 08:08:08.895 INFO 2123 --- [ol-5-thread-178] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 08:08:11.681 INFO 2123 --- [ol-5-thread-178] o.ihtsdo.otf.snomedboot.ReleaseImporter : 3207060 reference set members read from der2_cRefset_LanguageFull-en_INT_20180731.txt
2018-11-22 08:08:11.910 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 3863 ReferenceSetMembers
2018-11-22 08:08:12.680 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: started
2018-11-22 08:08:12.680 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: get branch criteria took 0.0 seconds
2018-11-22 08:08:12.751 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed is-a relationships. took 0.071 seconds
2018-11-22 08:08:12.753 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed axiom is-a fragments. took 0.002 seconds
2018-11-22 08:08:12.753 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : Performing incremental update of stated semantic index
2018-11-22 08:08:12.985 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect existingAncestors from QueryConcept. took 0.232 seconds
2018-11-22 08:08:13.639 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect existingDescendants from QueryConcept. took 0.654 seconds
2018-11-22 08:08:14.200 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Build existing nodes from Relationships. took 0.561 seconds
2018-11-22 08:08:14.442 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Build existing nodes from Axioms. took 0.242 seconds
2018-11-22 08:08:14.442 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : 6432 existing nodes loaded.
2018-11-22 08:08:14.651 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Update graph using changed relationships. took 0.209 seconds
2018-11-22 08:08:14.652 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Update graph using changed axioms. took 0.001 seconds
2018-11-22 08:08:15.432 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect existingDescendants from QueryConcept. took 0.78 seconds
2018-11-22 08:08:15.439 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 6179 QueryConcepts
2018-11-22 08:08:17.215 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Save updated QueryConcepts took 1.783 seconds
2018-11-22 08:08:17.215 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: total took 4.535 seconds
2018-11-22 08:08:17.215 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: started
2018-11-22 08:08:17.215 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: get branch criteria took 0.0 seconds
2018-11-22 08:08:17.408 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect changed is-a relationships. took 0.193 seconds
2018-11-22 08:08:17.409 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : Performing incremental update of inferred semantic index
2018-11-22 08:08:17.948 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect existingAncestors from QueryConcept. took 0.54 seconds
2018-11-22 08:08:18.841 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect existingDescendants from QueryConcept. took 0.893 seconds
2018-11-22 08:08:19.965 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Build existing nodes from Relationships. took 1.124 seconds
2018-11-22 08:08:19.965 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : 11451 existing nodes loaded.
2018-11-22 08:08:20.353 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Update graph using changed relationships. took 0.388 seconds
2018-11-22 08:08:21.767 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect existingDescendants from QueryConcept. took 1.414 seconds
2018-11-22 08:08:21.826 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 8679 QueryConcepts
2018-11-22 08:08:30.179 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Save updated QueryConcepts took 8.412 seconds
2018-11-22 08:08:30.179 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: total took 12.964 seconds
2018-11-22 08:08:30.192 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Completed commit on MAIN at 1542874054773
2018-11-22 08:08:30.195 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Creating Code System version - Code System: SNOMEDCT, Version: 2013-01-31, Release Branch: MAIN/2013-01-31
2018-11-22 08:08:30.195 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Versioning content...
2018-11-22 08:08:30.209 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Open commit on MAIN at 1542874110209
2018-11-22 08:08:30.261 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: started
2018-11-22 08:08:30.261 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: get branch criteria took 0.0 seconds
2018-11-22 08:08:30.263 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed is-a relationships. took 0.002 seconds
2018-11-22 08:08:30.264 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed axiom is-a fragments. took 0.001 seconds
2018-11-22 08:08:30.270 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: started
2018-11-22 08:08:30.270 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: get branch criteria took 0.0 seconds
2018-11-22 08:08:30.302 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index inferred: Collect changed is-a relationships. took 0.032 seconds
2018-11-22 08:08:30.334 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Completed commit on MAIN at 1542874110209
2018-11-22 08:08:30.334 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Creating version branch content...
2018-11-22 08:08:30.343 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Creating branch Branch{path=MAIN/2013-01-31, base=1542874110209, head=1542874110334, start=1542874110334, end=null}
2018-11-22 08:08:30.354 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Persisting Code System Version...
2018-11-22 08:08:30.365 INFO 2123 --- [pool-2-thread-1] o.s.s.c.data.services.CodeSystemService : Versioning complete.
2018-11-22 08:08:31.104 INFO 2123 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Open commit on MAIN at 1542874111104
2018-11-22 08:08:31.104 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Loading release delta 20130731
2018-11-22 08:08:31.104 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading concepts for release 20130731
2018-11-22 08:08:31.717 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : 581635 concepts read from sct2_Concept_Full_INT_20180731.txt
2018-11-22 08:08:31.717 INFO 2123 --- [pool-2-thread-1] o.ihtsdo.otf.snomedboot.ReleaseImporter : includedReferenceSetPathPatterns: []
2018-11-22 08:08:31.717 INFO 2123 --- [ol-5-thread-185] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading relationships for release 20130731
2018-11-22 08:08:31.717 INFO 2123 --- [ol-5-thread-178] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading relationships for release 20130731
2018-11-22 08:08:31.718 INFO 2123 --- [ol-5-thread-189] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading descriptions for release 20130731
2018-11-22 08:08:31.722 INFO 2123 --- [ol-5-thread-187] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading descriptions for release 20130731
2018-11-22 08:08:31.759 INFO 2123 --- [ol-5-thread-187] o.ihtsdo.otf.snomedboot.ReleaseImporter : 5151 descriptions read from sct2_TextDefinition_Full-en_INT_20180731.txt
2018-11-22 08:08:34.112 INFO 2123 --- [ol-5-thread-185] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 08:08:38.284 INFO 2123 --- [ol-5-thread-189] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Descriptions
2018-11-22 08:08:38.295 INFO 2123 --- [ol-5-thread-185] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 08:08:42.797 INFO 2123 --- [ol-5-thread-189] o.ihtsdo.otf.snomedboot.ReleaseImporter : 2513952 descriptions read from sct2_Description_Full-en_INT_20180731.txt
2018-11-22 08:08:43.915 INFO 2123 --- [ol-5-thread-185] o.ihtsdo.otf.snomedboot.ReleaseImporter : 1130957 relationships read from sct2_StatedRelationship_Full_INT_20180731.txt
2018-11-22 08:08:47.541 INFO 2123 --- [ol-5-thread-178] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 08:08:53.597 INFO 2123 --- [ol-5-thread-178] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 08:08:57.397 INFO 2123 --- [ol-5-thread-178] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 08:08:59.846 INFO 2123 --- [ol-5-thread-178] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 08:09:01.308 INFO 2123 --- [ol-5-thread-178] i.k.elasticvc.api.ComponentService : Saving batch of 5000 Relationships
2018-11-22 08:09:04.447 INFO 2123 --- [ol-5-thread-178] o.ihtsdo.otf.snomedboot.ReleaseImporter : 5112181 relationships read from sct2_Relationship_Full_INT_20180731.txt
2018-11-22 08:09:04.447 INFO 2123 --- [ol-5-thread-178] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20130731
2018-11-22 08:09:04.447 INFO 2123 --- [ol-5-thread-189] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20130731
2018-11-22 08:09:04.447 INFO 2123 --- [ol-5-thread-185] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20130731
2018-11-22 08:09:04.447 INFO 2123 --- [ol-5-thread-185] o.ihtsdo.otf.snomedboot.ReleaseImporter : 11 reference set members read from sct2_sRefset_OWLAxiomFull_INT_20180731.txt
2018-11-22 08:09:04.447 INFO 2123 --- [ol-5-thread-187] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20130731
2018-11-22 08:09:04.448 INFO 2123 --- [ol-5-thread-187] o.ihtsdo.otf.snomedboot.ReleaseImporter : 7 reference set members read from sct2_sRefset_OWLOntologyFull_INT_20180731.txt
2018-11-22 08:09:04.448 INFO 2123 --- [ol-5-thread-185] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20130731
2018-11-22 08:09:04.448 INFO 2123 --- [ol-5-thread-185] o.ihtsdo.otf.snomedboot.ReleaseImporter : 4 reference set members read from der2_ciRefset_DescriptionTypeFull_INT_20180731.txt
2018-11-22 08:09:04.448 INFO 2123 --- [ol-5-thread-193] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20130731
2018-11-22 08:09:04.448 INFO 2123 --- [ol-5-thread-189] o.ihtsdo.otf.snomedboot.ReleaseImporter : 167 reference set members read from der2_cciRefset_RefsetDescriptorFull_INT_20180731.txt
2018-11-22 08:09:04.448 INFO 2123 --- [ol-5-thread-185] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20130731
2018-11-22 08:09:04.448 INFO 2123 --- [ol-5-thread-178] o.ihtsdo.otf.snomedboot.ReleaseImporter : 144 reference set members read from der2_ssccRefset_MRCMAttributeRangeFull_INT_20180731.txt
2018-11-22 08:09:04.448 INFO 2123 --- [ol-5-thread-189] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20130731
2018-11-22 08:09:04.449 INFO 2123 --- [ol-5-thread-185] o.ihtsdo.otf.snomedboot.ReleaseImporter : 36 reference set members read from der2_sssssssRefset_MRCMDomainFull_INT_20180731.txt
2018-11-22 08:09:04.449 INFO 2123 --- [ol-5-thread-185] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20130731
2018-11-22 08:09:04.449 INFO 2123 --- [ol-5-thread-195] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20130731
2018-11-22 08:09:04.450 INFO 2123 --- [ol-5-thread-195] o.ihtsdo.otf.snomedboot.ReleaseImporter : 154 reference set members read from der2_cissccRefset_MRCMAttributeDomainFull_INT_20180731.txt
2018-11-22 08:09:04.450 INFO 2123 --- [ol-5-thread-178] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20130731
2018-11-22 08:09:04.454 INFO 2123 --- [ol-5-thread-187] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20130731
2018-11-22 08:09:04.474 INFO 2123 --- [ol-5-thread-194] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20130731
2018-11-22 08:09:04.474 INFO 2123 --- [ol-5-thread-194] o.ihtsdo.otf.snomedboot.ReleaseImporter : 3 reference set members read from der2_cRefset_MRCMModuleScopeFull_INT_20180731.txt
2018-11-22 08:09:04.497 INFO 2123 --- [ol-5-thread-194] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20130731
2018-11-22 08:09:04.514 INFO 2123 --- [ol-5-thread-196] o.ihtsdo.otf.snomedboot.ReleaseImporter : Reading reference set members for release 20130731
2018-11-22 08:09:04.515 INFO 2123 --- [ol-5-thread-196] o.ihtsdo.otf.snomedboot.ReleaseImporter : 56 reference set members read from der2_ssRefset_ModuleDependencyFull_INT_20180731.txt
2018-11-22 08:09:04.567 INFO 2123 --- [ol-5-thread-193] o.ihtsdo.otf.snomedboot.ReleaseImporter : 19870 reference set members read from der2_Refset_SimpleFull_INT_20180731.txt
2018-11-22 08:09:04.627 INFO 2123 --- [ol-5-thread-189] i.k.elasticvc.api.ComponentService : Saving batch of 1650 Concepts
2018-11-22 08:09:05.657 INFO 2123 --- [ol-5-thread-189] i.k.elasticvc.api.ComponentService : Saving batch of 258 Descriptions
2018-11-22 08:09:05.959 INFO 2123 --- [ol-5-thread-189] i.k.elasticvc.api.ComponentService : Saving batch of 1914 Relationships
2018-11-22 08:09:06.630 INFO 2123 --- [ol-5-thread-189] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 08:09:08.015 INFO 2123 --- [ol-5-thread-178] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 08:09:09.188 INFO 2123 --- [ol-5-thread-178] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 08:09:10.330 INFO 2123 --- [ol-5-thread-178] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 08:09:11.350 INFO 2123 --- [ol-5-thread-187] o.ihtsdo.otf.snomedboot.ReleaseImporter : 167899 reference set members read from der2_cRefset_AssociationFull_INT_20180731.txt
2018-11-22 08:09:11.518 INFO 2123 --- [ol-5-thread-178] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 08:09:12.655 INFO 2123 --- [ol-5-thread-178] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 08:09:13.866 INFO 2123 --- [ol-5-thread-178] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 08:09:14.999 INFO 2123 --- [ol-5-thread-178] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 08:09:16.052 INFO 2123 --- [ol-5-thread-178] o.ihtsdo.otf.snomedboot.ReleaseImporter : 224459 reference set members read from der2_iisssccRefset_ExtendedMapFull_INT_20180731.txt
2018-11-22 08:09:16.359 INFO 2123 --- [ol-5-thread-185] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 08:09:17.600 INFO 2123 --- [ol-5-thread-194] o.ihtsdo.otf.snomedboot.ReleaseImporter : 484195 reference set members read from der2_sRefset_SimpleMapFull_INT_20180731.txt
2018-11-22 08:09:17.939 INFO 2123 --- [ol-5-thread-185] o.ihtsdo.otf.snomedboot.ReleaseImporter : 665802 reference set members read from der2_cRefset_AttributeValueFull_INT_20180731.txt
2018-11-22 08:09:19.757 INFO 2123 --- [ol-5-thread-189] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2018-11-22 08:09:23.296 INFO 2123 --- [ol-5-thread-189] o.ihtsdo.otf.snomedboot.ReleaseImporter : 3207060 reference set members read from der2_cRefset_LanguageFull-en_INT_20180731.txt
2018-11-22 08:09:23.589 INFO 2123 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 4881 ReferenceSetMembers
2018-11-22 08:09:24.487 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: started
2018-11-22 08:09:24.487 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: get branch criteria took 0.0 seconds
2018-11-22 08:09:24.599 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed is-a relationships. took 0.112 seconds
2018-11-22 08:09:24.601 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect changed axiom is-a fragments. took 0.002 seconds
2018-11-22 08:09:24.601 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : Performing incremental update of stated semantic index
2018-11-22 08:09:24.828 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect existingAncestors from QueryConcept. took 0.227 seconds
2018-11-22 08:09:25.871 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Collect existingDescendants from QueryConcept. took 1.043 seconds
2018-11-22 08:09:28.196 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Build existing nodes from Relationships. took 2.325 seconds
2018-11-22 08:09:28.642 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated: Build existing nodes from Axioms. took 0.446 seconds
2018-11-22 08:09:28.642 INFO 2123 --- [pool-2-thread-1] o.s.s.c.d.s.SemanticIndexUpdateService : 22302 existing nodes loaded.
2018-11-22 08:09:28.970 INFO 2123 --- [pool-2-thread-1] o.snomed.snowstorm.core.util.TimerUtil : Timer TC index stated:
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