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@kaicode
Created August 13, 2021 13:31
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2021-08-13 12:54:04.615 INFO 1 --- [ool-9-thread-85] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:54:05.610 INFO 1 --- [ool-9-thread-84] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
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2021-08-13 12:54:09.751 INFO 1 --- [ool-9-thread-85] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:54:10.706 INFO 1 --- [ool-9-thread-53] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
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2021-08-13 12:54:58.829 INFO 1 --- [ool-9-thread-85] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
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2021-08-13 12:55:00.471 INFO 1 --- [ool-9-thread-16] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:55:01.289 INFO 1 --- [ool-9-thread-85] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:55:02.112 INFO 1 --- [ool-9-thread-84] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
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2021-08-13 12:55:11.155 INFO 1 --- [ool-9-thread-84] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:55:12.023 INFO 1 --- [ool-9-thread-84] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:55:12.908 INFO 1 --- [ool-9-thread-53] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
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2021-08-13 12:55:15.081 INFO 1 --- [ool-9-thread-85] o.ihtsdo.otf.snomedboot.ReleaseImporter : 294962 reference set members read from der2_cRefset_AssociationReferenceSnapshot_AU1000036_20210630.txt
2021-08-13 12:55:15.459 INFO 1 --- [ool-9-thread-53] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
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2021-08-13 12:57:18.158 INFO 1 --- [ool-9-thread-84] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
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2021-08-13 12:57:21.644 INFO 1 --- [ool-9-thread-84] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
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2021-08-13 12:58:22.505 INFO 1 --- [ool-9-thread-16] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:58:23.417 INFO 1 --- [ool-9-thread-16] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:58:24.311 INFO 1 --- [ool-9-thread-53] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:58:25.229 INFO 1 --- [ool-9-thread-16] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:58:26.047 INFO 1 --- [ool-9-thread-84] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
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2021-08-13 12:58:27.837 INFO 1 --- [ool-9-thread-53] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:58:28.715 INFO 1 --- [ool-9-thread-84] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:58:29.592 INFO 1 --- [ool-9-thread-53] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:58:30.525 INFO 1 --- [ool-9-thread-53] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:58:31.396 INFO 1 --- [ool-9-thread-16] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:58:32.211 INFO 1 --- [ool-9-thread-84] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:58:33.035 INFO 1 --- [ool-9-thread-84] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:58:33.886 INFO 1 --- [ool-9-thread-53] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:58:34.761 INFO 1 --- [ool-9-thread-53] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:58:35.665 INFO 1 --- [ool-9-thread-84] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:58:36.525 INFO 1 --- [ool-9-thread-53] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:58:37.420 INFO 1 --- [ool-9-thread-84] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:58:38.332 INFO 1 --- [ool-9-thread-53] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:58:38.743 INFO 1 --- [ool-9-thread-53] o.ihtsdo.otf.snomedboot.ReleaseImporter : 716510 reference set members read from der2_cRefset_AttributeValueSnapshot_AU1000036_20210630.txt
2021-08-13 12:58:39.110 INFO 1 --- [ool-9-thread-84] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:58:39.969 INFO 1 --- [ool-9-thread-84] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:58:40.881 INFO 1 --- [ool-9-thread-16] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:58:41.741 INFO 1 --- [ool-9-thread-84] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:58:42.628 INFO 1 --- [ool-9-thread-84] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:58:43.485 INFO 1 --- [ool-9-thread-16] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:58:44.425 INFO 1 --- [ool-9-thread-84] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:58:45.541 INFO 1 --- [ool-9-thread-16] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:58:46.437 INFO 1 --- [ool-9-thread-84] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:58:47.290 INFO 1 --- [ool-9-thread-84] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:58:48.119 INFO 1 --- [ool-9-thread-16] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:58:49.020 INFO 1 --- [ool-9-thread-16] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:58:49.899 INFO 1 --- [ool-9-thread-16] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:58:50.783 INFO 1 --- [ool-9-thread-84] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:58:51.627 INFO 1 --- [ool-9-thread-84] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:58:52.419 INFO 1 --- [ool-9-thread-84] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:58:53.282 INFO 1 --- [ool-9-thread-84] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:58:54.321 INFO 1 --- [ool-9-thread-84] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:58:55.175 INFO 1 --- [ool-9-thread-84] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:58:56.046 INFO 1 --- [ool-9-thread-84] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:58:56.548 INFO 1 --- [ool-9-thread-16] o.ihtsdo.otf.snomedboot.ReleaseImporter : 508190 reference set members read from sct2_sRefset_OWLExpressionSnapshot_AU1000036_20210630.txt
2021-08-13 12:58:56.942 INFO 1 --- [ool-9-thread-84] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:58:57.966 INFO 1 --- [ool-9-thread-84] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:58:58.986 INFO 1 --- [ool-9-thread-84] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:58:59.957 INFO 1 --- [ool-9-thread-84] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:59:00.926 INFO 1 --- [ool-9-thread-84] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:59:01.845 INFO 1 --- [ool-9-thread-84] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:59:02.786 INFO 1 --- [ool-9-thread-84] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:59:03.783 INFO 1 --- [ool-9-thread-84] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:59:04.775 INFO 1 --- [ool-9-thread-84] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:59:05.757 INFO 1 --- [ool-9-thread-84] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:59:06.737 INFO 1 --- [ool-9-thread-84] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:59:07.675 INFO 1 --- [ool-9-thread-84] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:59:08.627 INFO 1 --- [ool-9-thread-84] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:59:09.540 INFO 1 --- [ool-9-thread-84] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:59:10.485 INFO 1 --- [ool-9-thread-84] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:59:11.447 INFO 1 --- [ool-9-thread-84] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:59:12.420 INFO 1 --- [ool-9-thread-84] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:59:13.408 INFO 1 --- [ool-9-thread-84] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:59:14.349 INFO 1 --- [ool-9-thread-84] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:59:15.279 INFO 1 --- [ool-9-thread-84] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:59:16.213 INFO 1 --- [ool-9-thread-84] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:59:17.144 INFO 1 --- [ool-9-thread-84] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:59:18.083 INFO 1 --- [ool-9-thread-84] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:59:19.010 INFO 1 --- [ool-9-thread-84] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:59:19.943 INFO 1 --- [ool-9-thread-84] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:59:20.874 INFO 1 --- [ool-9-thread-84] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:59:21.838 INFO 1 --- [ool-9-thread-84] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:59:22.804 INFO 1 --- [ool-9-thread-84] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:59:23.690 INFO 1 --- [ool-9-thread-84] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:59:24.589 INFO 1 --- [ool-9-thread-84] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:59:25.497 INFO 1 --- [ool-9-thread-84] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:59:26.355 INFO 1 --- [ool-9-thread-84] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:59:27.281 INFO 1 --- [ool-9-thread-84] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:59:28.136 INFO 1 --- [ool-9-thread-84] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:59:28.972 INFO 1 --- [ool-9-thread-84] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:59:29.826 INFO 1 --- [ool-9-thread-84] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:59:30.676 INFO 1 --- [ool-9-thread-84] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:59:31.565 INFO 1 --- [ool-9-thread-84] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:59:32.430 INFO 1 --- [ool-9-thread-84] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:59:33.316 INFO 1 --- [ool-9-thread-84] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:59:34.242 INFO 1 --- [ool-9-thread-84] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:59:35.214 INFO 1 --- [ool-9-thread-84] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:59:36.064 INFO 1 --- [ool-9-thread-84] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:59:36.926 INFO 1 --- [ool-9-thread-84] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:59:37.783 INFO 1 --- [ool-9-thread-84] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:59:38.646 INFO 1 --- [ool-9-thread-84] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:59:39.520 INFO 1 --- [ool-9-thread-84] i.k.elasticvc.api.ComponentService : Saving batch of 5000 ReferenceSetMembers
2021-08-13 12:59:39.924 INFO 1 --- [ool-9-thread-84] o.ihtsdo.otf.snomedboot.ReleaseImporter : 1017657 reference set members read from der2_cRefset_LanguageSnapshot-en-AU_AU1000036_20210630.txt
2021-08-13 12:59:39.925 INFO 1 --- [pool-2-thread-1] o.s.s.c.r.r.ImportComponentFactoryImpl : 0 components of type Concept were not imported from RF2 because a newer version was found.
2021-08-13 12:59:39.925 INFO 1 --- [pool-2-thread-1] o.s.s.c.r.r.ImportComponentFactoryImpl : 0 components of type Description were not imported from RF2 because a newer version was found.
2021-08-13 12:59:39.925 INFO 1 --- [pool-2-thread-1] o.s.s.c.r.r.ImportComponentFactoryImpl : 0 components of type ReferenceSetMember were not imported from RF2 because a newer version was found.
2021-08-13 12:59:39.925 INFO 1 --- [pool-2-thread-1] o.s.s.c.r.r.ImportComponentFactoryImpl : 0 components of type Relationship were not imported from RF2 because a newer version was found.
2021-08-13 12:59:40.138 INFO 1 --- [pool-2-thread-1] i.k.elasticvc.api.ComponentService : Saving batch of 1376 ReferenceSetMembers
2021-08-13 12:59:58.894 INFO 1 --- [pool-2-thread-1] d.s.ConceptDefinitionStatusUpdateService : Checking 506253 concepts.
2021-08-13 13:00:03.066 INFO 1 --- [pool-2-thread-1] d.s.ConceptDefinitionStatusUpdateService : 31794 concepts found with defined axioms.
2021-08-13 13:00:03.304 INFO 1 --- [pool-2-thread-1] d.s.ConceptDefinitionStatusUpdateService : Updating 106 concepts from fully defined to primitive due to axiom changes.
2021-08-13 13:00:03.304 INFO 1 --- [pool-2-thread-1] d.s.ConceptDefinitionStatusUpdateService : 106 concepts need updating.
2021-08-13 13:00:07.453 INFO 1 --- [pool-2-thread-1] d.s.ConceptDefinitionStatusUpdateService : 31483 concepts found with defined axioms.
2021-08-13 13:00:07.736 INFO 1 --- [pool-2-thread-1] d.s.ConceptDefinitionStatusUpdateService : Updating 99 concepts from fully defined to primitive due to axiom changes.
2021-08-13 13:00:07.736 INFO 1 --- [pool-2-thread-1] d.s.ConceptDefinitionStatusUpdateService : 99 concepts need updating.
2021-08-13 13:00:11.874 INFO 1 --- [pool-2-thread-1] d.s.ConceptDefinitionStatusUpdateService : 31911 concepts found with defined axioms.
2021-08-13 13:00:12.122 INFO 1 --- [pool-2-thread-1] d.s.ConceptDefinitionStatusUpdateService : Updating 105 concepts from fully defined to primitive due to axiom changes.
2021-08-13 13:00:12.122 INFO 1 --- [pool-2-thread-1] d.s.ConceptDefinitionStatusUpdateService : 105 concepts need updating.
2021-08-13 13:00:16.263 INFO 1 --- [pool-2-thread-1] d.s.ConceptDefinitionStatusUpdateService : 32082 concepts found with defined axioms.
2021-08-13 13:00:16.539 INFO 1 --- [pool-2-thread-1] d.s.ConceptDefinitionStatusUpdateService : Updating 99 concepts from fully defined to primitive due to axiom changes.
2021-08-13 13:00:16.539 INFO 1 --- [pool-2-thread-1] d.s.ConceptDefinitionStatusUpdateService : 99 concepts need updating.
2021-08-13 13:00:20.631 INFO 1 --- [pool-2-thread-1] d.s.ConceptDefinitionStatusUpdateService : 30986 concepts found with defined axioms.
2021-08-13 13:00:20.950 INFO 1 --- [pool-2-thread-1] d.s.ConceptDefinitionStatusUpdateService : Updating 94 concepts from fully defined to primitive due to axiom changes.
2021-08-13 13:00:20.950 INFO 1 --- [pool-2-thread-1] d.s.ConceptDefinitionStatusUpdateService : 94 concepts need updating.
2021-08-13 13:00:24.982 INFO 1 --- [pool-2-thread-1] d.s.ConceptDefinitionStatusUpdateService : 31001 concepts found with defined axioms.
2021-08-13 13:00:25.330 INFO 1 --- [pool-2-thread-1] d.s.ConceptDefinitionStatusUpdateService : Updating 96 concepts from fully defined to primitive due to axiom changes.
2021-08-13 13:00:25.330 INFO 1 --- [pool-2-thread-1] d.s.ConceptDefinitionStatusUpdateService : 96 concepts need updating.
2021-08-13 13:00:29.296 INFO 1 --- [pool-2-thread-1] d.s.ConceptDefinitionStatusUpdateService : 31156 concepts found with defined axioms.
2021-08-13 13:00:29.677 INFO 1 --- [pool-2-thread-1] d.s.ConceptDefinitionStatusUpdateService : Updating 88 concepts from fully defined to primitive due to axiom changes.
2021-08-13 13:00:29.677 INFO 1 --- [pool-2-thread-1] d.s.ConceptDefinitionStatusUpdateService : 88 concepts need updating.
2021-08-13 13:00:32.441 INFO 1 --- [pool-2-thread-1] d.s.ConceptDefinitionStatusUpdateService : 24904 concepts found with defined axioms.
2021-08-13 13:00:32.784 INFO 1 --- [pool-2-thread-1] d.s.ConceptDefinitionStatusUpdateService : Updating 67 concepts from fully defined to primitive due to axiom changes.
2021-08-13 13:00:32.784 INFO 1 --- [pool-2-thread-1] d.s.ConceptDefinitionStatusUpdateService : 67 concepts need updating.
2021-08-13 13:00:34.233 INFO 1 --- [pool-2-thread-1] o.s.o.o.taxonomy.AxiomDeserialiser : Deserialised 10,000 axioms...
2021-08-13 13:00:35.206 INFO 1 --- [pool-2-thread-1] o.s.o.o.taxonomy.AxiomDeserialiser : Deserialised 20,000 axioms...
2021-08-13 13:00:36.185 INFO 1 --- [pool-2-thread-1] o.s.o.o.taxonomy.AxiomDeserialiser : Deserialised 30,000 axioms...
2021-08-13 13:00:37.107 INFO 1 --- [pool-2-thread-1] o.s.o.o.taxonomy.AxiomDeserialiser : Deserialised 40,000 axioms...
2021-08-13 13:00:37.780 INFO 1 --- [pool-2-thread-1] o.s.o.o.taxonomy.AxiomDeserialiser : Deserialised 50,000 axioms...
2021-08-13 13:00:38.425 INFO 1 --- [pool-2-thread-1] o.s.o.o.taxonomy.AxiomDeserialiser : Deserialised 60,000 axioms...
2021-08-13 13:00:39.102 INFO 1 --- [pool-2-thread-1] o.s.o.o.taxonomy.AxiomDeserialiser : Deserialised 70,000 axioms...
2021-08-13 13:00:39.783 INFO 1 --- [pool-2-thread-1] o.s.o.o.taxonomy.AxiomDeserialiser : Deserialised 80,000 axioms...
2021-08-13 13:00:40.508 INFO 1 --- [pool-2-thread-1] o.s.o.o.taxonomy.AxiomDeserialiser : Deserialised 90,000 axioms...
2021-08-13 13:00:41.166 INFO 1 --- [pool-2-thread-1] o.s.o.o.taxonomy.AxiomDeserialiser : Deserialised 100,000 axioms...
2021-08-13 13:00:41.824 INFO 1 --- [pool-2-thread-1] o.s.o.o.taxonomy.AxiomDeserialiser : Deserialised 110,000 axioms...
2021-08-13 13:00:42.479 INFO 1 --- [pool-2-thread-1] o.s.o.o.taxonomy.AxiomDeserialiser : Deserialised 120,000 axioms...
2021-08-13 13:00:43.133 INFO 1 --- [pool-2-thread-1] o.s.o.o.taxonomy.AxiomDeserialiser : Deserialised 130,000 axioms...
2021-08-13 13:00:43.782 INFO 1 --- [pool-2-thread-1] o.s.o.o.taxonomy.AxiomDeserialiser : Deserialised 140,000 axioms...
2021-08-13 13:00:44.480 INFO 1 --- [pool-2-thread-1] o.s.o.o.taxonomy.AxiomDeserialiser : Deserialised 150,000 axioms...
2021-08-13 13:00:45.165 INFO 1 --- [pool-2-thread-1] o.s.o.o.taxonomy.AxiomDeserialiser : Deserialised 160,000 axioms...
2021-08-13 13:00:45.809 INFO 1 --- [pool-2-thread-1] o.s.o.o.taxonomy.AxiomDeserialiser : Deserialised 170,000 axioms...
2021-08-13 13:00:46.489 INFO 1 --- [pool-2-thread-1] o.s.o.o.taxonomy.AxiomDeserialiser : Deserialised 180,000 axioms...
2021-08-13 13:00:47.121 INFO 1 --- [pool-2-thread-1] o.s.o.o.taxonomy.AxiomDeserialiser : Deserialised 190,000 axioms...
2021-08-13 13:00:47.806 INFO 1 --- [pool-2-thread-1] o.s.o.o.taxonomy.AxiomDeserialiser : Deserialised 200,000 axioms...
2021-08-13 13:00:48.509 INFO 1 --- [pool-2-thread-1] o.s.o.o.taxonomy.AxiomDeserialiser : Deserialised 210,000 axioms...
2021-08-13 13:00:49.176 INFO 1 --- [pool-2-thread-1] o.s.o.o.taxonomy.AxiomDeserialiser : Deserialised 220,000 axioms...
2021-08-13 13:00:49.847 INFO 1 --- [pool-2-thread-1] o.s.o.o.taxonomy.AxiomDeserialiser : Deserialised 230,000 axioms...
2021-08-13 13:00:50.514 INFO 1 --- [pool-2-thread-1] o.s.o.o.taxonomy.AxiomDeserialiser : Deserialised 240,000 axioms...
2021-08-13 13:00:51.164 INFO 1 --- [pool-2-thread-1] o.s.o.o.taxonomy.AxiomDeserialiser : Deserialised 250,000 axioms...
2021-08-13 13:00:51.899 INFO 1 --- [pool-2-thread-1] o.s.o.o.taxonomy.AxiomDeserialiser : Deserialised 260,000 axioms...
2021-08-13 13:00:52.591 INFO 1 --- [pool-2-thread-1] o.s.o.o.taxonomy.AxiomDeserialiser : Deserialised 270,000 axioms...
2021-08-13 13:00:53.274 INFO 1 --- [pool-2-thread-1] o.s.o.o.taxonomy.AxiomDeserialiser : Deserialised 280,000 axioms...
2021-08-13 13:00:53.951 INFO 1 --- [pool-2-thread-1] o.s.o.o.taxonomy.AxiomDeserialiser : Deserialised 290,000 axioms...
2021-08-13 13:00:54.621 INFO 1 --- [pool-2-thread-1] o.s.o.o.taxonomy.AxiomDeserialiser : Deserialised 300,000 axioms...
2021-08-13 13:00:55.277 INFO 1 --- [pool-2-thread-1] o.s.o.o.taxonomy.AxiomDeserialiser : Deserialised 310,000 axioms...
2021-08-13 13:00:55.958 INFO 1 --- [pool-2-thread-1] o.s.o.o.taxonomy.AxiomDeserialiser : Deserialised 320,000 axioms...
2021-08-13 13:00:56.587 INFO 1 --- [pool-2-thread-1] o.s.o.o.taxonomy.AxiomDeserialiser : Deserialised 330,000 axioms...
2021-08-13 13:00:57.230 INFO 1 --- [pool-2-thread-1] o.s.o.o.taxonomy.AxiomDeserialiser : Deserialised 340,000 axioms...
2021-08-13 13:00:57.917 INFO 1 --- [pool-2-thread-1] o.s.o.o.taxonomy.AxiomDeserialiser : Deserialised 350,000 axioms...
2021-08-13 13:00:58.551 INFO 1 --- [pool-2-thread-1] o.s.o.o.taxonomy.AxiomDeserialiser : Deserialised 360,000 axioms...
2021-08-13 13:00:59.249 INFO 1 --- [pool-2-thread-1] o.s.o.o.taxonomy.AxiomDeserialiser : Deserialised 370,000 axioms...
2021-08-13 13:00:59.875 INFO 1 --- [pool-2-thread-1] o.s.o.o.taxonomy.AxiomDeserialiser : Deserialised 380,000 axioms...
2021-08-13 13:01:00.534 INFO 1 --- [pool-2-thread-1] o.s.o.o.taxonomy.AxiomDeserialiser : Deserialised 390,000 axioms...
2021-08-13 13:01:01.223 INFO 1 --- [pool-2-thread-1] o.s.o.o.taxonomy.AxiomDeserialiser : Deserialised 400,000 axioms...
2021-08-13 13:01:01.869 INFO 1 --- [pool-2-thread-1] o.s.o.o.taxonomy.AxiomDeserialiser : Deserialised 410,000 axioms...
2021-08-13 13:01:02.506 INFO 1 --- [pool-2-thread-1] o.s.o.o.taxonomy.AxiomDeserialiser : Deserialised 420,000 axioms...
2021-08-13 13:01:03.140 INFO 1 --- [pool-2-thread-1] o.s.o.o.taxonomy.AxiomDeserialiser : Deserialised 430,000 axioms...
2021-08-13 13:01:03.774 INFO 1 --- [pool-2-thread-1] o.s.o.o.taxonomy.AxiomDeserialiser : Deserialised 440,000 axioms...
2021-08-13 13:01:04.387 INFO 1 --- [pool-2-thread-1] o.s.o.o.taxonomy.AxiomDeserialiser : Deserialised 450,000 axioms...
2021-08-13 13:01:04.975 INFO 1 --- [pool-2-thread-1] o.s.o.o.taxonomy.AxiomDeserialiser : Deserialised 460,000 axioms...
2021-08-13 13:01:05.635 INFO 1 --- [pool-2-thread-1] o.s.o.o.taxonomy.AxiomDeserialiser : Deserialised 470,000 axioms...
2021-08-13 13:01:06.277 INFO 1 --- [pool-2-thread-1] o.s.o.o.taxonomy.AxiomDeserialiser : Deserialised 480,000 axioms...
2021-08-13 13:01:07.014 INFO 1 --- [pool-2-thread-1] o.s.o.o.taxonomy.AxiomDeserialiser : Deserialised 490,000 axioms...
2021-08-13 13:01:07.736 INFO 1 --- [pool-2-thread-1] o.s.o.o.taxonomy.AxiomDeserialiser : Deserialised 500,000 axioms...
2021-08-13 13:01:08.215 ERROR 1 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Commit commitListener threw IllegalStateException, rolling back commit 1628858459314 on branch MAIN/SNOMEDCT-AU
java.lang.IllegalStateException: Failed to update semantic index. Failed to convert axiom EquivalentClasses(:840444002 ObjectSomeValuesFrom(:609096000 ObjectSomeValuesFrom(:42752001 :231896005)))
at org.snomed.snowstorm.core.data.services.SemanticIndexUpdateService.preCommitCompletion(SemanticIndexUpdateService.java:93)
at io.kaicode.elasticvc.api.BranchService.completeCommit(BranchService.java:404)
at io.kaicode.elasticvc.domain.Commit.close(Commit.java:61)
at org.snomed.snowstorm.core.rf2.rf2import.ImportComponentFactoryImpl.completeImportCommit(ImportComponentFactoryImpl.java:217)
at org.snomed.snowstorm.core.rf2.rf2import.ImportComponentFactoryImpl.loadingComponentsCompleted(ImportComponentFactoryImpl.java:206)
at org.ihtsdo.otf.snomedboot.ReleaseImporter$ImportRun.doLoadReleaseFiles(ReleaseImporter.java:228)
at org.ihtsdo.otf.snomedboot.ReleaseImporter$ImportRun.doLoadReleaseFiles(ReleaseImporter.java:180)
at org.ihtsdo.otf.snomedboot.ReleaseImporter$ImportRun.access$100(ReleaseImporter.java:164)
at org.ihtsdo.otf.snomedboot.ReleaseImporter.loadSnapshotReleaseFiles(ReleaseImporter.java:44)
at org.ihtsdo.otf.snomedboot.ReleaseImporter.loadSnapshotReleaseFiles(ReleaseImporter.java:68)
at org.snomed.snowstorm.core.rf2.rf2import.ImportService.snapshotImport(ImportService.java:198)
at org.snomed.snowstorm.core.rf2.rf2import.ImportService.importFiles(ImportService.java:157)
at org.snomed.snowstorm.core.rf2.rf2import.ImportService.importArchive(ImportService.java:108)
at org.snomed.snowstorm.core.rf2.rf2import.ImportService.lambda$importArchiveAsync$1(ImportService.java:243)
at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
at java.base/java.lang.Thread.run(Thread.java:829)
Caused by: org.snomed.otf.owltoolkit.conversion.ConversionException: Failed to convert axiom EquivalentClasses(:840444002 ObjectSomeValuesFrom(:609096000 ObjectSomeValuesFrom(:42752001 :231896005)))
at org.snomed.snowstorm.core.data.services.SemanticIndexUpdateService.lambda$axiomStreamToRelationshipStream$24(SemanticIndexUpdateService.java:671)
at java.base/java.util.Iterator.forEachRemaining(Iterator.java:133)
at org.snomed.snowstorm.core.data.services.SemanticIndexUpdateService.axiomStreamToRelationshipStream(SemanticIndexUpdateService.java:651)
at org.snomed.snowstorm.core.data.services.SemanticIndexUpdateService.buildRelevantPartsOfExistingGraph(SemanticIndexUpdateService.java:516)
at org.snomed.snowstorm.core.data.services.SemanticIndexUpdateService.updateSemanticIndex(SemanticIndexUpdateService.java:202)
at org.snomed.snowstorm.core.data.services.SemanticIndexUpdateService.updateStatedAndInferredSemanticIndex(SemanticIndexUpdateService.java:126)
at org.snomed.snowstorm.core.data.services.SemanticIndexUpdateService.preCommitCompletion(SemanticIndexUpdateService.java:91)
... 18 common frames omitted
Caused by: org.snomed.otf.owltoolkit.conversion.ConversionException: Expecting ObjectIntersectionOf at first level of expression, got ObjectSomeValuesFrom in expression ObjectSomeValuesFrom(http://snomed.info/id/609096000 ObjectSomeValuesFrom(http://snomed.info/id/42752001 http://snomed.info/id/231896005)).
at org.snomed.otf.owltoolkit.conversion.AxiomRelationshipConversionService.getRelationships(AxiomRelationshipConversionService.java:282)
at org.snomed.otf.owltoolkit.conversion.AxiomRelationshipConversionService.convertAxiomToRelationships(AxiomRelationshipConversionService.java:156)
at org.snomed.otf.owltoolkit.conversion.AxiomRelationshipConversionService.convertAxiomToRelationships(AxiomRelationshipConversionService.java:56)
at org.snomed.snowstorm.core.data.services.AxiomConversionService.convertAxiomMemberToAxiomRepresentation(AxiomConversionService.java:43)
at org.snomed.snowstorm.core.data.services.SemanticIndexUpdateService.lambda$axiomStreamToRelationshipStream$24(SemanticIndexUpdateService.java:653)
... 24 common frames omitted
2021-08-13 13:01:08.215 INFO 1 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Rolling back commit on MAIN/SNOMEDCT-AU started at 1628858459314
2021-08-13 13:01:08.216 INFO 1 --- [pool-2-thread-1] io.kaicode.elasticvc.api.BranchService : Deleting documents on MAIN/SNOMEDCT-AU started at 1628858459314.
2021-08-13 13:01:38.254 ERROR 1 --- [pool-2-thread-1] o.s.s.core.rf2.rf2import.ImportService : Failed RF2 SNAPSHOT import on branch MAIN/SNOMEDCT-AU. ID df67d34b-7c20-48b2-80c7-c286e846723d
org.springframework.dao.DataAccessResourceFailureException: 30,000 milliseconds timeout on connection http-outgoing-0 [ACTIVE]; nested exception is java.lang.RuntimeException: 30,000 milliseconds timeout on connection http-outgoing-0 [ACTIVE]
at org.springframework.data.elasticsearch.core.ElasticsearchExceptionTranslator.translateExceptionIfPossible(ElasticsearchExceptionTranslator.java:76)
at org.springframework.data.elasticsearch.core.ElasticsearchRestTemplate.translateException(ElasticsearchRestTemplate.java:398)
at org.springframework.data.elasticsearch.core.ElasticsearchRestTemplate.execute(ElasticsearchRestTemplate.java:381)
at org.springframework.data.elasticsearch.core.ElasticsearchRestTemplate.delete(ElasticsearchRestTemplate.java:223)
at io.kaicode.elasticvc.api.BranchService.doContentRollback(BranchService.java:541)
at io.kaicode.elasticvc.api.BranchService.rollbackCommit(BranchService.java:491)
at io.kaicode.elasticvc.api.BranchService.completeCommit(BranchService.java:410)
at io.kaicode.elasticvc.domain.Commit.close(Commit.java:61)
at org.snomed.snowstorm.core.rf2.rf2import.ImportComponentFactoryImpl.completeImportCommit(ImportComponentFactoryImpl.java:217)
at org.snomed.snowstorm.core.rf2.rf2import.ImportComponentFactoryImpl.loadingComponentsCompleted(ImportComponentFactoryImpl.java:206)
at org.ihtsdo.otf.snomedboot.ReleaseImporter$ImportRun.doLoadReleaseFiles(ReleaseImporter.java:228)
at org.ihtsdo.otf.snomedboot.ReleaseImporter$ImportRun.doLoadReleaseFiles(ReleaseImporter.java:180)
at org.ihtsdo.otf.snomedboot.ReleaseImporter$ImportRun.access$100(ReleaseImporter.java:164)
at org.ihtsdo.otf.snomedboot.ReleaseImporter.loadSnapshotReleaseFiles(ReleaseImporter.java:44)
at org.ihtsdo.otf.snomedboot.ReleaseImporter.loadSnapshotReleaseFiles(ReleaseImporter.java:68)
at org.snomed.snowstorm.core.rf2.rf2import.ImportService.snapshotImport(ImportService.java:198)
at org.snomed.snowstorm.core.rf2.rf2import.ImportService.importFiles(ImportService.java:157)
at org.snomed.snowstorm.core.rf2.rf2import.ImportService.importArchive(ImportService.java:108)
at org.snomed.snowstorm.core.rf2.rf2import.ImportService.lambda$importArchiveAsync$1(ImportService.java:243)
at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
at java.base/java.lang.Thread.run(Thread.java:829)
Caused by: java.lang.RuntimeException: 30,000 milliseconds timeout on connection http-outgoing-0 [ACTIVE]
at org.springframework.data.elasticsearch.core.ElasticsearchRestTemplate.translateException(ElasticsearchRestTemplate.java:396)
... 22 common frames omitted
Caused by: java.net.SocketTimeoutException: 30,000 milliseconds timeout on connection http-outgoing-0 [ACTIVE]
at org.elasticsearch.client.RestClient.extractAndWrapCause(RestClient.java:808)
at org.elasticsearch.client.RestClient.performRequest(RestClient.java:248)
at org.elasticsearch.client.RestClient.performRequest(RestClient.java:235)
at org.elasticsearch.client.RestHighLevelClient.internalPerformRequest(RestHighLevelClient.java:1609)
at org.elasticsearch.client.RestHighLevelClient.performRequest(RestHighLevelClient.java:1579)
at org.elasticsearch.client.RestHighLevelClient.performRequestAndParseEntity(RestHighLevelClient.java:1549)
at org.elasticsearch.client.RestHighLevelClient.deleteByQuery(RestHighLevelClient.java:625)
at org.springframework.data.elasticsearch.core.ElasticsearchRestTemplate.lambda$delete$5(ElasticsearchRestTemplate.java:223)
at org.springframework.data.elasticsearch.core.ElasticsearchRestTemplate.execute(ElasticsearchRestTemplate.java:379)
... 21 common frames omitted
Caused by: java.net.SocketTimeoutException: 30,000 milliseconds timeout on connection http-outgoing-0 [ACTIVE]
at org.apache.http.nio.protocol.HttpAsyncRequestExecutor.timeout(HttpAsyncRequestExecutor.java:387)
at org.apache.http.impl.nio.client.InternalIODispatch.onTimeout(InternalIODispatch.java:92)
at org.apache.http.impl.nio.client.InternalIODispatch.onTimeout(InternalIODispatch.java:39)
at org.apache.http.impl.nio.reactor.AbstractIODispatch.timeout(AbstractIODispatch.java:175)
at org.apache.http.impl.nio.reactor.BaseIOReactor.sessionTimedOut(BaseIOReactor.java:261)
at org.apache.http.impl.nio.reactor.AbstractIOReactor.timeoutCheck(AbstractIOReactor.java:502)
at org.apache.http.impl.nio.reactor.BaseIOReactor.validate(BaseIOReactor.java:211)
at org.apache.http.impl.nio.reactor.AbstractIOReactor.execute(AbstractIOReactor.java:280)
at org.apache.http.impl.nio.reactor.BaseIOReactor.execute(BaseIOReactor.java:104)
at org.apache.http.impl.nio.reactor.AbstractMultiworkerIOReactor$Worker.run(AbstractMultiworkerIOReactor.java:591)
... 1 common frames omitted
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