Created
February 28, 2020 13:46
-
-
Save kaicode/b953300e1ef1282c7ea2167e6c0688c2 to your computer and use it in GitHub Desktop.
SNOMED CT to OWL Ontology file conversion using https://github.com/IHTSDO/snomed-owl-toolkit
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| $ java -Xms6g -jar snomed-owl-toolkit*executable.jar -rf2-to-owl -rf2-snapshot-archives SnomedCT_InternationalRF2_PRODUCTION_20200131T120000Z.zip -version 20200131 | |
| Creating Ontology using the following options: | |
| Snapshot archives: [SnomedCT_InternationalRF2_PRODUCTION_20200131T120000Z.zip] | |
| Delta archive: -none- | |
| Ontology URI: http://snomed.info/sct/900000000000207008 | |
| Ontology Version: 20200131 | |
| Include Description Annotations: true | |
| 2020-02-28 13:44:00,759 [INFO ] [main] org.snomed.otf.owltoolkit.conversion.RF2ToOWLService - Loading RF2 files | |
| 2020-02-28 13:44:10,763 [INFO ] [main] org.ihtsdo.otf.snomedboot.ReleaseImporter - Unzipping file to /var/folders/q9/rk7j9vwn1t19z0fc06qjyrkh0000gn/T/temp-rf2-unzip1504935911099533193/1/sct2_Concept_Snapshot_INT_20200131.txt | |
| 2020-02-28 13:44:10,921 [INFO ] [main] org.ihtsdo.otf.snomedboot.ReleaseImporter - Unzipping file to /var/folders/q9/rk7j9vwn1t19z0fc06qjyrkh0000gn/T/temp-rf2-unzip1504935911099533193/1/sct2_Description_Snapshot-en_INT_20200131.txt | |
| 2020-02-28 13:44:12,157 [INFO ] [main] org.ihtsdo.otf.snomedboot.ReleaseImporter - Unzipping file to /var/folders/q9/rk7j9vwn1t19z0fc06qjyrkh0000gn/T/temp-rf2-unzip1504935911099533193/1/sct2_StatedRelationship_Snapshot_INT_20200131.txt | |
| 2020-02-28 13:44:12,926 [INFO ] [main] org.ihtsdo.otf.snomedboot.ReleaseImporter - Unzipping file to /var/folders/q9/rk7j9vwn1t19z0fc06qjyrkh0000gn/T/temp-rf2-unzip1504935911099533193/1/sct2_Relationship_Snapshot_INT_20200131.txt | |
| 2020-02-28 13:44:14,699 [INFO ] [main] org.ihtsdo.otf.snomedboot.ReleaseImporter - Unzipping file to /var/folders/q9/rk7j9vwn1t19z0fc06qjyrkh0000gn/T/temp-rf2-unzip1504935911099533193/1/sct2_Identifier_Snapshot_INT_20200131.txt | |
| 2020-02-28 13:44:14,700 [INFO ] [main] org.ihtsdo.otf.snomedboot.ReleaseImporter - Unzipping file to /var/folders/q9/rk7j9vwn1t19z0fc06qjyrkh0000gn/T/temp-rf2-unzip1504935911099533193/1/sct2_TextDefinition_Snapshot-en_INT_20200131.txt | |
| 2020-02-28 13:44:14,728 [INFO ] [main] org.ihtsdo.otf.snomedboot.ReleaseImporter - Unzipping file to /var/folders/q9/rk7j9vwn1t19z0fc06qjyrkh0000gn/T/temp-rf2-unzip1504935911099533193/1/sct2_sRefset_OWLExpressionSnapshot_INT_20200131.txt | |
| 2020-02-28 13:44:15,332 [INFO ] [main] org.ihtsdo.otf.snomedboot.ReleaseImporter - Unzipping file to /var/folders/q9/rk7j9vwn1t19z0fc06qjyrkh0000gn/T/temp-rf2-unzip1504935911099533193/1/der2_cRefset_AssociationSnapshot_INT_20200131.txt | |
| 2020-02-28 13:44:15,512 [INFO ] [main] org.ihtsdo.otf.snomedboot.ReleaseImporter - Unzipping file to /var/folders/q9/rk7j9vwn1t19z0fc06qjyrkh0000gn/T/temp-rf2-unzip1504935911099533193/1/der2_cRefset_AttributeValueSnapshot_INT_20200131.txt | |
| 2020-02-28 13:44:16,201 [INFO ] [main] org.ihtsdo.otf.snomedboot.ReleaseImporter - Unzipping file to /var/folders/q9/rk7j9vwn1t19z0fc06qjyrkh0000gn/T/temp-rf2-unzip1504935911099533193/1/der2_Refset_SimpleSnapshot_INT_20200131.txt | |
| 2020-02-28 13:44:16,220 [INFO ] [main] org.ihtsdo.otf.snomedboot.ReleaseImporter - Unzipping file to /var/folders/q9/rk7j9vwn1t19z0fc06qjyrkh0000gn/T/temp-rf2-unzip1504935911099533193/1/der2_sRefset_SimpleMapSnapshot_INT_20200131.txt | |
| 2020-02-28 13:44:16,806 [INFO ] [main] org.ihtsdo.otf.snomedboot.ReleaseImporter - Unzipping file to /var/folders/q9/rk7j9vwn1t19z0fc06qjyrkh0000gn/T/temp-rf2-unzip1504935911099533193/1/der2_iisssccRefset_ExtendedMapSnapshot_INT_20200131.txt | |
| 2020-02-28 13:44:17,116 [INFO ] [main] org.ihtsdo.otf.snomedboot.ReleaseImporter - Unzipping file to /var/folders/q9/rk7j9vwn1t19z0fc06qjyrkh0000gn/T/temp-rf2-unzip1504935911099533193/1/der2_cRefset_LanguageSnapshot-en_INT_20200131.txt | |
| 2020-02-28 13:44:20,291 [INFO ] [main] org.ihtsdo.otf.snomedboot.ReleaseImporter - Unzipping file to /var/folders/q9/rk7j9vwn1t19z0fc06qjyrkh0000gn/T/temp-rf2-unzip1504935911099533193/1/der2_cciRefset_RefsetDescriptorSnapshot_INT_20200131.txt | |
| 2020-02-28 13:44:20,292 [INFO ] [main] org.ihtsdo.otf.snomedboot.ReleaseImporter - Unzipping file to /var/folders/q9/rk7j9vwn1t19z0fc06qjyrkh0000gn/T/temp-rf2-unzip1504935911099533193/1/der2_ssRefset_ModuleDependencySnapshot_INT_20200131.txt | |
| 2020-02-28 13:44:20,293 [INFO ] [main] org.ihtsdo.otf.snomedboot.ReleaseImporter - Unzipping file to /var/folders/q9/rk7j9vwn1t19z0fc06qjyrkh0000gn/T/temp-rf2-unzip1504935911099533193/1/der2_ciRefset_DescriptionTypeSnapshot_INT_20200131.txt | |
| 2020-02-28 13:44:20,293 [INFO ] [main] org.ihtsdo.otf.snomedboot.ReleaseImporter - Unzipping file to /var/folders/q9/rk7j9vwn1t19z0fc06qjyrkh0000gn/T/temp-rf2-unzip1504935911099533193/1/der2_sssssssRefset_MRCMDomainSnapshot_INT_20200131.txt | |
| 2020-02-28 13:44:20,294 [INFO ] [main] org.ihtsdo.otf.snomedboot.ReleaseImporter - Unzipping file to /var/folders/q9/rk7j9vwn1t19z0fc06qjyrkh0000gn/T/temp-rf2-unzip1504935911099533193/1/der2_cissccRefset_MRCMAttributeDomainSnapshot_INT_20200131.txt | |
| 2020-02-28 13:44:20,295 [INFO ] [main] org.ihtsdo.otf.snomedboot.ReleaseImporter - Unzipping file to /var/folders/q9/rk7j9vwn1t19z0fc06qjyrkh0000gn/T/temp-rf2-unzip1504935911099533193/1/der2_ssccRefset_MRCMAttributeRangeSnapshot_INT_20200131.txt | |
| 2020-02-28 13:44:20,296 [INFO ] [main] org.ihtsdo.otf.snomedboot.ReleaseImporter - Unzipping file to /var/folders/q9/rk7j9vwn1t19z0fc06qjyrkh0000gn/T/temp-rf2-unzip1504935911099533193/1/der2_cRefset_MRCMModuleScopeSnapshot_INT_20200131.txt | |
| 2020-02-28 13:44:20,309 [INFO ] [main] org.ihtsdo.otf.snomedboot.ReleaseImporter - RF2 release filename not recognised 'sct2_Identifier_Snapshot_INT_20200131.txt'. This file will not be loaded. | |
| 2020-02-28 13:44:20,318 [INFO ] [main] org.ihtsdo.otf.snomedboot.ReleaseImporter - Loading SNAPSHOT release files ReleaseFiles{conceptPaths=[/var/folders/q9/rk7j9vwn1t19z0fc06qjyrkh0000gn/T/temp-rf2-unzip1504935911099533193/1/sct2_Concept_Snapshot_INT_20200131.txt], descriptionPaths=[/var/folders/q9/rk7j9vwn1t19z0fc06qjyrkh0000gn/T/temp-rf2-unzip1504935911099533193/1/sct2_Description_Snapshot-en_INT_20200131.txt], textDefinitionPaths=[/var/folders/q9/rk7j9vwn1t19z0fc06qjyrkh0000gn/T/temp-rf2-unzip1504935911099533193/1/sct2_TextDefinition_Snapshot-en_INT_20200131.txt], relationshipPaths=[/var/folders/q9/rk7j9vwn1t19z0fc06qjyrkh0000gn/T/temp-rf2-unzip1504935911099533193/1/sct2_Relationship_Snapshot_INT_20200131.txt], statedRelationshipPaths=[/var/folders/q9/rk7j9vwn1t19z0fc06qjyrkh0000gn/T/temp-rf2-unzip1504935911099533193/1/sct2_StatedRelationship_Snapshot_INT_20200131.txt], refsetPaths=[/var/folders/q9/rk7j9vwn1t19z0fc06qjyrkh0000gn/T/temp-rf2-unzip1504935911099533193/1/der2_cRefset_AssociationSnapshot_INT_20200131.txt, /var/folders/q9/rk7j9vwn1t19z0fc06qjyrkh0000gn/T/temp-rf2-unzip1504935911099533193/1/der2_ssccRefset_MRCMAttributeRangeSnapshot_INT_20200131.txt, /var/folders/q9/rk7j9vwn1t19z0fc06qjyrkh0000gn/T/temp-rf2-unzip1504935911099533193/1/der2_Refset_SimpleSnapshot_INT_20200131.txt, /var/folders/q9/rk7j9vwn1t19z0fc06qjyrkh0000gn/T/temp-rf2-unzip1504935911099533193/1/der2_cissccRefset_MRCMAttributeDomainSnapshot_INT_20200131.txt, /var/folders/q9/rk7j9vwn1t19z0fc06qjyrkh0000gn/T/temp-rf2-unzip1504935911099533193/1/der2_cRefset_MRCMModuleScopeSnapshot_INT_20200131.txt, /var/folders/q9/rk7j9vwn1t19z0fc06qjyrkh0000gn/T/temp-rf2-unzip1504935911099533193/1/der2_cciRefset_RefsetDescriptorSnapshot_INT_20200131.txt, /var/folders/q9/rk7j9vwn1t19z0fc06qjyrkh0000gn/T/temp-rf2-unzip1504935911099533193/1/sct2_sRefset_OWLExpressionSnapshot_INT_20200131.txt, /var/folders/q9/rk7j9vwn1t19z0fc06qjyrkh0000gn/T/temp-rf2-unzip1504935911099533193/1/der2_iisssccRefset_ExtendedMapSnapshot_INT_20200131.txt, /var/folders/q9/rk7j9vwn1t19z0fc06qjyrkh0000gn/T/temp-rf2-unzip1504935911099533193/1/der2_sssssssRefset_MRCMDomainSnapshot_INT_20200131.txt, /var/folders/q9/rk7j9vwn1t19z0fc06qjyrkh0000gn/T/temp-rf2-unzip1504935911099533193/1/der2_ciRefset_DescriptionTypeSnapshot_INT_20200131.txt, /var/folders/q9/rk7j9vwn1t19z0fc06qjyrkh0000gn/T/temp-rf2-unzip1504935911099533193/1/der2_cRefset_AttributeValueSnapshot_INT_20200131.txt, /var/folders/q9/rk7j9vwn1t19z0fc06qjyrkh0000gn/T/temp-rf2-unzip1504935911099533193/1/der2_cRefset_LanguageSnapshot-en_INT_20200131.txt, /var/folders/q9/rk7j9vwn1t19z0fc06qjyrkh0000gn/T/temp-rf2-unzip1504935911099533193/1/der2_sRefset_SimpleMapSnapshot_INT_20200131.txt, /var/folders/q9/rk7j9vwn1t19z0fc06qjyrkh0000gn/T/temp-rf2-unzip1504935911099533193/1/der2_ssRefset_ModuleDependencySnapshot_INT_20200131.txt]} | |
| 2020-02-28 13:44:20,318 [INFO ] [main] org.ihtsdo.otf.snomedboot.ReleaseImporter - Gathering effective dates for effective component filtering. | |
| 2020-02-28 13:44:20,323 [INFO ] [main] org.ihtsdo.otf.snomedboot.ReleaseImporter - Reading concepts | |
| 2020-02-28 13:44:21,160 [INFO ] [main] org.ihtsdo.otf.snomedboot.ReleaseImporter - 474074 concepts read from sct2_Concept_Snapshot_INT_20200131.txt | |
| 2020-02-28 13:44:21,162 [INFO ] [main] org.ihtsdo.otf.snomedboot.ReleaseImporter - includedReferenceSetPathPatterns: [der2_cRefset_Language.*, .*_sRefset_OWL.*, .*_cissccRefset_MRCMAttributeDomain.*] | |
| 2020-02-28 13:44:21,163 [INFO ] [main] org.ihtsdo.otf.snomedboot.ReleaseImporter - refset 'der2_cissccRefset_MRCMAttributeDomainSnapshot_INT_20200131.txt' matches pattern '.*_cissccRefset_MRCMAttributeDomain.*' | |
| 2020-02-28 13:44:21,165 [INFO ] [main] org.ihtsdo.otf.snomedboot.ReleaseImporter - refset 'sct2_sRefset_OWLExpressionSnapshot_INT_20200131.txt' matches pattern '.*_sRefset_OWL.*' | |
| 2020-02-28 13:44:21,165 [INFO ] [main] org.ihtsdo.otf.snomedboot.ReleaseImporter - refset 'der2_cRefset_LanguageSnapshot-en_INT_20200131.txt' matches pattern 'der2_cRefset_Language.*' | |
| 2020-02-28 13:44:21,165 [INFO ] [main] org.ihtsdo.otf.snomedboot.ReleaseImporter - Reading relationships | |
| 2020-02-28 13:44:25,164 [INFO ] [main] org.ihtsdo.otf.snomedboot.ReleaseImporter - 2996068 relationships read from sct2_Relationship_Snapshot_INT_20200131.txt | |
| 2020-02-28 13:44:25,164 [INFO ] [main] org.ihtsdo.otf.snomedboot.ReleaseImporter - Reading relationships | |
| 2020-02-28 13:44:26,553 [INFO ] [main] org.ihtsdo.otf.snomedboot.ReleaseImporter - 1024719 relationships read from sct2_StatedRelationship_Snapshot_INT_20200131.txt | |
| 2020-02-28 13:44:26,553 [INFO ] [main] org.ihtsdo.otf.snomedboot.ReleaseImporter - Reading descriptions | |
| 2020-02-28 13:44:28,594 [INFO ] [main] org.ihtsdo.otf.snomedboot.ReleaseImporter - 1479136 descriptions read from sct2_Description_Snapshot-en_INT_20200131.txt | |
| 2020-02-28 13:44:28,594 [INFO ] [main] org.ihtsdo.otf.snomedboot.ReleaseImporter - Reading descriptions | |
| 2020-02-28 13:44:28,609 [INFO ] [main] org.ihtsdo.otf.snomedboot.ReleaseImporter - 6807 descriptions read from sct2_TextDefinition_Snapshot-en_INT_20200131.txt | |
| 2020-02-28 13:44:28,609 [INFO ] [main] org.ihtsdo.otf.snomedboot.ReleaseImporter - Reading reference set members | |
| 2020-02-28 13:44:28,611 [INFO ] [main] org.ihtsdo.otf.snomedboot.ReleaseImporter - 140 reference set members read from der2_cissccRefset_MRCMAttributeDomainSnapshot_INT_20200131.txt | |
| 2020-02-28 13:44:28,611 [INFO ] [main] org.ihtsdo.otf.snomedboot.ReleaseImporter - Reading reference set members | |
| 2020-02-28 13:44:29,153 [INFO ] [main] org.ihtsdo.otf.snomedboot.ReleaseImporter - 354548 reference set members read from sct2_sRefset_OWLExpressionSnapshot_INT_20200131.txt | |
| 2020-02-28 13:44:29,153 [INFO ] [main] org.ihtsdo.otf.snomedboot.ReleaseImporter - Reading reference set members | |
| 2020-02-28 13:44:33,393 [INFO ] [main] org.ihtsdo.otf.snomedboot.ReleaseImporter - 2885902 reference set members read from der2_cRefset_LanguageSnapshot-en_INT_20200131.txt | |
| 2020-02-28 13:44:33,393 [INFO ] [main] org.ihtsdo.otf.snomedboot.ReleaseImporter - Reading concepts | |
| 2020-02-28 13:44:34,067 [INFO ] [main] org.ihtsdo.otf.snomedboot.ReleaseImporter - 474074 concepts read from sct2_Concept_Snapshot_INT_20200131.txt | |
| 2020-02-28 13:44:34,067 [INFO ] [main] org.ihtsdo.otf.snomedboot.ReleaseImporter - includedReferenceSetPathPatterns: [der2_cRefset_Language.*, .*_sRefset_OWL.*, .*_cissccRefset_MRCMAttributeDomain.*] | |
| 2020-02-28 13:44:34,067 [INFO ] [main] org.ihtsdo.otf.snomedboot.ReleaseImporter - refset 'der2_cissccRefset_MRCMAttributeDomainSnapshot_INT_20200131.txt' matches pattern '.*_cissccRefset_MRCMAttributeDomain.*' | |
| 2020-02-28 13:44:34,067 [INFO ] [main] org.ihtsdo.otf.snomedboot.ReleaseImporter - refset 'sct2_sRefset_OWLExpressionSnapshot_INT_20200131.txt' matches pattern '.*_sRefset_OWL.*' | |
| 2020-02-28 13:44:34,067 [INFO ] [main] org.ihtsdo.otf.snomedboot.ReleaseImporter - refset 'der2_cRefset_LanguageSnapshot-en_INT_20200131.txt' matches pattern 'der2_cRefset_Language.*' | |
| 2020-02-28 13:44:34,235 [INFO ] [pool-1-thread-2] org.ihtsdo.otf.snomedboot.ReleaseImporter - Reading relationships | |
| 2020-02-28 13:44:34,235 [INFO ] [pool-1-thread-4] org.ihtsdo.otf.snomedboot.ReleaseImporter - Reading descriptions | |
| 2020-02-28 13:44:34,235 [INFO ] [pool-1-thread-3] org.ihtsdo.otf.snomedboot.ReleaseImporter - Reading descriptions | |
| 2020-02-28 13:44:34,235 [INFO ] [pool-1-thread-1] org.ihtsdo.otf.snomedboot.ReleaseImporter - Reading relationships | |
| 2020-02-28 13:44:34,286 [INFO ] [pool-1-thread-4] org.ihtsdo.otf.snomedboot.ReleaseImporter - 6807 descriptions read from sct2_TextDefinition_Snapshot-en_INT_20200131.txt | |
| 2020-02-28 13:44:36,646 [INFO ] [pool-1-thread-2] org.ihtsdo.otf.snomedboot.ReleaseImporter - 1024719 relationships read from sct2_StatedRelationship_Snapshot_INT_20200131.txt | |
| 2020-02-28 13:44:38,694 [INFO ] [pool-1-thread-3] org.ihtsdo.otf.snomedboot.ReleaseImporter - 1479136 descriptions read from sct2_Description_Snapshot-en_INT_20200131.txt | |
| 2020-02-28 13:44:43,233 [INFO ] [pool-1-thread-1] org.ihtsdo.otf.snomedboot.ReleaseImporter - 2996068 relationships read from sct2_Relationship_Snapshot_INT_20200131.txt | |
| 2020-02-28 13:44:43,233 [INFO ] [pool-1-thread-3] org.ihtsdo.otf.snomedboot.ReleaseImporter - Reading reference set members | |
| 2020-02-28 13:44:43,233 [INFO ] [pool-1-thread-2] org.ihtsdo.otf.snomedboot.ReleaseImporter - Reading reference set members | |
| 2020-02-28 13:44:43,233 [INFO ] [pool-1-thread-1] org.ihtsdo.otf.snomedboot.ReleaseImporter - Reading reference set members | |
| 2020-02-28 13:44:43,237 [INFO ] [pool-1-thread-1] org.ihtsdo.otf.snomedboot.ReleaseImporter - 140 reference set members read from der2_cissccRefset_MRCMAttributeDomainSnapshot_INT_20200131.txt | |
| 2020-02-28 13:44:44,198 [INFO ] [pool-1-thread-3] org.snomed.otf.owltoolkit.taxonomy.AxiomDeserialiser - Deserialised 10,000 axioms... | |
| 2020-02-28 13:44:44,565 [INFO ] [pool-1-thread-3] org.snomed.otf.owltoolkit.taxonomy.AxiomDeserialiser - Deserialised 20,000 axioms... | |
| 2020-02-28 13:44:45,034 [INFO ] [pool-1-thread-3] org.snomed.otf.owltoolkit.taxonomy.AxiomDeserialiser - Deserialised 30,000 axioms... | |
| 2020-02-28 13:44:45,264 [INFO ] [pool-1-thread-3] org.snomed.otf.owltoolkit.taxonomy.AxiomDeserialiser - Deserialised 40,000 axioms... | |
| 2020-02-28 13:44:45,502 [INFO ] [pool-1-thread-3] org.snomed.otf.owltoolkit.taxonomy.AxiomDeserialiser - Deserialised 50,000 axioms... | |
| 2020-02-28 13:44:45,894 [INFO ] [pool-1-thread-3] org.snomed.otf.owltoolkit.taxonomy.AxiomDeserialiser - Deserialised 60,000 axioms... | |
| 2020-02-28 13:44:46,145 [INFO ] [pool-1-thread-3] org.snomed.otf.owltoolkit.taxonomy.AxiomDeserialiser - Deserialised 70,000 axioms... | |
| 2020-02-28 13:44:46,391 [INFO ] [pool-1-thread-3] org.snomed.otf.owltoolkit.taxonomy.AxiomDeserialiser - Deserialised 80,000 axioms... | |
| 2020-02-28 13:44:46,772 [INFO ] [pool-1-thread-3] org.snomed.otf.owltoolkit.taxonomy.AxiomDeserialiser - Deserialised 90,000 axioms... | |
| 2020-02-28 13:44:47,026 [INFO ] [pool-1-thread-3] org.snomed.otf.owltoolkit.taxonomy.AxiomDeserialiser - Deserialised 100,000 axioms... | |
| 2020-02-28 13:44:47,260 [INFO ] [pool-1-thread-3] org.snomed.otf.owltoolkit.taxonomy.AxiomDeserialiser - Deserialised 110,000 axioms... | |
| 2020-02-28 13:44:47,635 [INFO ] [pool-1-thread-3] org.snomed.otf.owltoolkit.taxonomy.AxiomDeserialiser - Deserialised 120,000 axioms... | |
| 2020-02-28 13:44:47,885 [INFO ] [pool-1-thread-3] org.snomed.otf.owltoolkit.taxonomy.AxiomDeserialiser - Deserialised 130,000 axioms... | |
| 2020-02-28 13:44:48,122 [INFO ] [pool-1-thread-3] org.snomed.otf.owltoolkit.taxonomy.AxiomDeserialiser - Deserialised 140,000 axioms... | |
| 2020-02-28 13:44:48,530 [INFO ] [pool-1-thread-3] org.snomed.otf.owltoolkit.taxonomy.AxiomDeserialiser - Deserialised 150,000 axioms... | |
| 2020-02-28 13:44:48,770 [INFO ] [pool-1-thread-3] org.snomed.otf.owltoolkit.taxonomy.AxiomDeserialiser - Deserialised 160,000 axioms... | |
| 2020-02-28 13:44:49,024 [INFO ] [pool-1-thread-3] org.snomed.otf.owltoolkit.taxonomy.AxiomDeserialiser - Deserialised 170,000 axioms... | |
| 2020-02-28 13:44:49,391 [INFO ] [pool-1-thread-3] org.snomed.otf.owltoolkit.taxonomy.AxiomDeserialiser - Deserialised 180,000 axioms... | |
| 2020-02-28 13:44:49,629 [INFO ] [pool-1-thread-3] org.snomed.otf.owltoolkit.taxonomy.AxiomDeserialiser - Deserialised 190,000 axioms... | |
| 2020-02-28 13:44:49,896 [INFO ] [pool-1-thread-3] org.snomed.otf.owltoolkit.taxonomy.AxiomDeserialiser - Deserialised 200,000 axioms... | |
| 2020-02-28 13:44:50,270 [INFO ] [pool-1-thread-3] org.snomed.otf.owltoolkit.taxonomy.AxiomDeserialiser - Deserialised 210,000 axioms... | |
| 2020-02-28 13:44:50,506 [INFO ] [pool-1-thread-3] org.snomed.otf.owltoolkit.taxonomy.AxiomDeserialiser - Deserialised 220,000 axioms... | |
| 2020-02-28 13:44:50,727 [INFO ] [pool-1-thread-2] org.ihtsdo.otf.snomedboot.ReleaseImporter - 2885902 reference set members read from der2_cRefset_LanguageSnapshot-en_INT_20200131.txt | |
| 2020-02-28 13:44:50,741 [INFO ] [pool-1-thread-3] org.snomed.otf.owltoolkit.taxonomy.AxiomDeserialiser - Deserialised 230,000 axioms... | |
| 2020-02-28 13:44:50,963 [INFO ] [pool-1-thread-3] org.snomed.otf.owltoolkit.taxonomy.AxiomDeserialiser - Deserialised 240,000 axioms... | |
| 2020-02-28 13:44:51,186 [INFO ] [pool-1-thread-3] org.snomed.otf.owltoolkit.taxonomy.AxiomDeserialiser - Deserialised 250,000 axioms... | |
| 2020-02-28 13:44:51,545 [INFO ] [pool-1-thread-3] org.snomed.otf.owltoolkit.taxonomy.AxiomDeserialiser - Deserialised 260,000 axioms... | |
| 2020-02-28 13:44:51,768 [INFO ] [pool-1-thread-3] org.snomed.otf.owltoolkit.taxonomy.AxiomDeserialiser - Deserialised 270,000 axioms... | |
| 2020-02-28 13:44:52,005 [INFO ] [pool-1-thread-3] org.snomed.otf.owltoolkit.taxonomy.AxiomDeserialiser - Deserialised 280,000 axioms... | |
| 2020-02-28 13:44:52,228 [INFO ] [pool-1-thread-3] org.snomed.otf.owltoolkit.taxonomy.AxiomDeserialiser - Deserialised 290,000 axioms... | |
| 2020-02-28 13:44:52,457 [INFO ] [pool-1-thread-3] org.snomed.otf.owltoolkit.taxonomy.AxiomDeserialiser - Deserialised 300,000 axioms... | |
| 2020-02-28 13:44:52,678 [INFO ] [pool-1-thread-3] org.snomed.otf.owltoolkit.taxonomy.AxiomDeserialiser - Deserialised 310,000 axioms... | |
| 2020-02-28 13:44:52,904 [INFO ] [pool-1-thread-3] org.snomed.otf.owltoolkit.taxonomy.AxiomDeserialiser - Deserialised 320,000 axioms... | |
| 2020-02-28 13:44:53,245 [INFO ] [pool-1-thread-3] org.snomed.otf.owltoolkit.taxonomy.AxiomDeserialiser - Deserialised 330,000 axioms... | |
| 2020-02-28 13:44:53,477 [INFO ] [pool-1-thread-3] org.snomed.otf.owltoolkit.taxonomy.AxiomDeserialiser - Deserialised 340,000 axioms... | |
| 2020-02-28 13:44:53,706 [INFO ] [pool-1-thread-3] org.snomed.otf.owltoolkit.taxonomy.AxiomDeserialiser - Deserialised 350,000 axioms... | |
| 2020-02-28 13:44:53,778 [INFO ] [pool-1-thread-3] org.ihtsdo.otf.snomedboot.ReleaseImporter - 354548 reference set members read from sct2_sRefset_OWLExpressionSnapshot_INT_20200131.txt | |
| 2020-02-28 13:44:53,779 [INFO ] [main] org.ihtsdo.otf.snomedboot.ReleaseImporter - Release files read. JVM total memory is approx 3,938 MB. | |
| 2020-02-28 13:44:54,054 [INFO ] [main] org.snomed.otf.owltoolkit.taxonomy.SnomedTaxonomyBuilder - Loaded release snapshot | |
| 2020-02-28 13:44:54,054 [INFO ] [main] org.snomed.otf.owltoolkit.taxonomy.SnomedTaxonomyBuilder - Time taken deserialising axioms 8.067s | |
| 2020-02-28 13:44:54,054 [INFO ] [main] org.snomed.otf.owltoolkit.taxonomy.SnomedTaxonomyBuilder - Loading complete. | |
| 2020-02-28 13:44:54,055 [INFO ] [main] org.snomed.otf.owltoolkit.taxonomy.SnomedTaxonomyBuilder - SnomedTaxonomy loaded in 53.29 seconds | |
| 2020-02-28 13:44:54,055 [INFO ] [main] org.snomed.otf.owltoolkit.taxonomy.SnomedTaxonomyBuilder - 352568 concepts loaded | |
| 2020-02-28 13:44:54,055 [INFO ] [main] org.snomed.otf.owltoolkit.taxonomy.SnomedTaxonomyBuilder - 0 active stated relationships loaded | |
| 2020-02-28 13:44:54,094 [INFO ] [main] org.snomed.otf.owltoolkit.taxonomy.SnomedTaxonomyBuilder - 353211 active axioms loaded | |
| 2020-02-28 13:44:54,114 [INFO ] [main] org.snomed.otf.owltoolkit.taxonomy.SnomedTaxonomy - Using never grouped role list from MRCM reference set [411116001, 766954007, 733931002, 736472000, 736476002, 736473005, 272741003, 774081006, 766939001, 733930001, 766952006, 736474004, 774158006, 733933004, 736518005, 733932009, 763032000, 726542003, 784276002, 733928003, 736475003, 774159003, 766953001, 738774007] | |
| 2020-02-28 13:44:54,114 [INFO ] [main] org.snomed.otf.owltoolkit.conversion.RF2ToOWLService - Building Ontology | |
| 2020-02-28 13:45:13,341 [INFO ] [main] org.snomed.otf.owltoolkit.conversion.RF2ToOWLService - RF2 to OWL Ontology conversion complete. | |
| OWL Ontology file written to - ontology-20200131.owl |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment