Με αυτόν τον τρόπο εγκαθιστούμε την R 3.3.1 από source σε Linux
configureDir=`pwd`/R_3_3_1
if [ ! -f $configureDir/bin/R ]; then
sudo apt-get -y install gcc gfortran g++
sudo apt-get -y install libreadline6 libreadline6-dev
sudo apt-get -y install unzip zlib1g-dev zlibc zlib1g libbz2-dev liblzma-dev 
| input_vcf_not_gds=$1 | |
| cat > convertVCFtoGDS.r << EOF | |
| library(gdsfmt) | |
| library(SNPRelate) | |
| vcf.fn <- Sys.getenv("input_vcf_not_gds") | |
| gds.fn <- paste(vcf.fn, ".gds", sep="") |
| <script type="text/javascript"> | |
| Bokeh.$(function() { | |
| var modelid = "8ee676f0-74a4-4002-9744-d0c18df3a02f"; | |
| var modeltype = "PlotContext"; | |
| var elementid = "60b0cc6a-d20e-4a93-af82-7396e00b3f84"; | |
| Bokeh.logger.info("Realizing plot:") | |
| Bokeh.logger.info(" - modeltype: PlotContext"); | |
| Bokeh.logger.info(" - modelid: 8ee676f0-74a4-4002-9744-d0c18df3a02f"); | |
| Bokeh.logger.info(" - elementid: 60b0cc6a-d20e-4a93-af82-7396e00b3f84"); | |
| var all_models = [{"attributes": {"doc": "ffcdb53b-cd55-4479-b330-32210b90f3ea", "id": "ed22826d-9e86-4c6b-be56-2cbb8852e67d", "tags": []}, "type": "BasicTickFormatter", "id": "ed22826d-9e86-4c6b-be56-2cbb8852e67d"}, {"attributes": {"line_color": {"value": "#1f77b4"}, "line_alpha": {"units": "data", "value": 0.1}, "tags": [], "doc": "ffcdb53b-cd55-4479-b330-32210b90f3ea", "y1": {"units": "data", "field": "y1"}, "y0": {"units": "data", "field": "y0"}, "x0": {"units": "data", "field": "x0"}, "x1": {"units": "data", "field": "x1"} |
| [{"Creditor":"International Monetary Fund","Due Date":1423699200000,"Amount":747695915,"Description":"Loan under the IMF's first bailout program for Greece, in 2010.","Rate":"","Overdue":0,"Repaid":true},{"Creditor":"International Monetary Fund","Due Date":1425600000000,"Amount":299084589,"Description":"Loan under the IMF's first bailout program for Greece, in 2010.","Rate":"","Overdue":0,"Repaid":true},{"Creditor":"International Monetary Fund","Due Date":1426204800000,"Amount":336470163,"Description":"Loan under the IMF's first bailout program for Greece, in 2010.","Rate":"","Overdue":0,"Repaid":true},{"Creditor":"International Monetary Fund","Due Date":1426464000000,"Amount":560783604,"Description":"Loan under the IMF's first bailout program for Greece, in 2010.","Rate":"","Overdue":0,"Repaid":true},{"Creditor":"International Monetary Fund","Due Date":1426809600000,"Amount":336470163,"Description":"Loan under the IMF's first bailout program for Greece, in 2010.","Rate":"","Overdue":0,"Repaid":true},{"Credit |
| # Fetch data with: | |
| # wget -O myExperiment.html "http://www.myexperiment.org/workflows?num=10000" | |
| # Resulted plot: http://imgur.com/a/7Zzlu | |
| import re | |
| import datetime | |
| import matplotlib.pyplot as plt | |
| import seaborn |