Amit Kapadia kapadia

## George - 2D Example.ipynb

      
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                shoyer
                / George - 2D Example.ipynb
            
            
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              November 2, 2015 19:38
            
          
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## go.sh
#!/bin/bash

# Use -e to exit the script as soon as anything returns non-zero
set -eou pipefail


function usage() {
  echo ""
  echo "Template script for bash error handling."
  echo ""

## gist:9282152
import rasterio

with rasterio.open('input.tif') as src:
    source = src.read_band(1)

def window_transform(transform, offset):
    result = transform[:]
    result[3] = transform[3] + offset[0]*transform[5]
    result[0] = transform[0] + offset[1]*transform[1]
    return result

## nbstripout
#!/usr/bin/env python
"""strip outputs from an IPython Notebook

Opens a notebook, strips its output, and writes the outputless version to the original file.

Useful mainly as a git filter or pre-commit hook for users who don't want to track output in VCS.

This does mostly the same thing as the `Clear All Output` command in the notebook UI.

LICENSE: Public Domain

## pairwise_cython.pyx
#cython:boundscheck=False
#cython:wraparound=False

import numpy as np
from cython.parallel cimport prange
from libc.math cimport sqrt

cdef inline double dotp(int i, int j, int N, double[:, ::1] X) nogil:
    cdef:
        int k

## gist:5059418
<?xml version="1.0" encoding="UTF-8"?>
<CORSConfiguration xmlns="http://s3.amazonaws.com/doc/2006-03-01/">
    <CORSRule>
        <AllowedOrigin>*</AllowedOrigin>
        <AllowedMethod>GET</AllowedMethod>
        <MaxAgeSeconds>3000</MaxAgeSeconds>
        <AllowedHeader>Content-*</AllowedHeader>
        <AllowedHeader>Host</AllowedHeader>
    </CORSRule>
</CORSConfiguration>

## index.html
<!doctype html>

<link rel="stylesheet" type="text/css" href="style.css" />

<h1>Nutrient Scatterplot (WebGL-2D)</h1>
<canvas id="chart"></canvas>
<div id="controls">
  <span id="hover-food"></span><br/>
  X axis <select id="xaxis"></select><br/>
  Y axis <select id="yaxis"></select><br/>

## pipelinedemo.py
# pipelinedemo.py
# Data processing pipeline demo

from json import dumps
import logging

def coroutine(func):
    """Used as a decorator, advances a generator to active it"""
    def start(*args,**kwargs):
        cr = func(*args,**kwargs)

## install_postgis_osx.sh
# Some good references are:
# http://russbrooks.com/2010/11/25/install-postgresql-9-on-os-x
# http://www.paolocorti.net/2008/01/30/installing-postgis-on-ubuntu/
# http://postgis.refractions.net/documentation/manual-1.5/ch02.html#id2630392

#1. Install PostgreSQL postgis and postgres

brew install postgis
initdb /usr/local/var/postgres
pg_ctl -D /usr/local/var/postgres -l /usr/local/var/postgres/server.log start

## memusg
#!/usr/bin/env bash
# memusg -- Measure memory usage of processes
# Usage: memusg COMMAND [ARGS]...
#
# Author: Jaeho Shin <netj@sparcs.org>
# Created: 2010-08-16
############################################################################
# Copyright 2010 Jaeho Shin.                                               #
#                                                                          #
# Licensed under the Apache License, Version 2.0 (the "License");          #
	#!/bin/bash

	# Use -e to exit the script as soon as anything returns non-zero
	set -eou pipefail


	function usage() {
	echo ""
	echo "Template script for bash error handling."
	echo ""
	import rasterio

	with rasterio.open('input.tif') as src:
	source = src.read_band(1)

	def window_transform(transform, offset):
	result = transform[:]
	result[3] = transform[3] + offset[0]*transform[5]
	result[0] = transform[0] + offset[1]*transform[1]
	return result
	#!/usr/bin/env python
	"""strip outputs from an IPython Notebook

	Opens a notebook, strips its output, and writes the outputless version to the original file.

	Useful mainly as a git filter or pre-commit hook for users who don't want to track output in VCS.

	This does mostly the same thing as the `Clear All Output` command in the notebook UI.

	LICENSE: Public Domain
	#cython:boundscheck=False
	#cython:wraparound=False

	import numpy as np
	from cython.parallel cimport prange
	from libc.math cimport sqrt

	cdef inline double dotp(int i, int j, int N, double[:, ::1] X) nogil:
	cdef:
	int k
	<?xml version="1.0" encoding="UTF-8"?>
	<CORSConfiguration xmlns="http://s3.amazonaws.com/doc/2006-03-01/">
	<CORSRule>
	<AllowedOrigin>*</AllowedOrigin>
	<AllowedMethod>GET</AllowedMethod>
	<MaxAgeSeconds>3000</MaxAgeSeconds>
	<AllowedHeader>Content-*</AllowedHeader>
	<AllowedHeader>Host</AllowedHeader>
	</CORSRule>
	</CORSConfiguration>
	<!doctype html>

	<link rel="stylesheet" type="text/css" href="style.css" />

	<h1>Nutrient Scatterplot (WebGL-2D)</h1>
	<canvas id="chart"></canvas>
	<div id="controls">
	<span id="hover-food"></span><br/>
	X axis <select id="xaxis"></select><br/>
	Y axis <select id="yaxis"></select><br/>
	# pipelinedemo.py
	# Data processing pipeline demo

	from json import dumps
	import logging

	def coroutine(func):
	"""Used as a decorator, advances a generator to active it"""
	def start(args,*kwargs):
	cr = func(args,*kwargs)
	# Some good references are:
	# http://russbrooks.com/2010/11/25/install-postgresql-9-on-os-x
	# http://www.paolocorti.net/2008/01/30/installing-postgis-on-ubuntu/
	# http://postgis.refractions.net/documentation/manual-1.5/ch02.html#id2630392

	#1. Install PostgreSQL postgis and postgres

	brew install postgis
	initdb /usr/local/var/postgres
	pg_ctl -D /usr/local/var/postgres -l /usr/local/var/postgres/server.log start
	#!/usr/bin/env bash
	# memusg -- Measure memory usage of processes
	# Usage: memusg COMMAND [ARGS]...
	#
	# Author: Jaeho Shin <netj@sparcs.org>
	# Created: 2010-08-16
	############################################################################
	# Copyright 2010 Jaeho Shin. #
	# #
	# Licensed under the Apache License, Version 2.0 (the "License"); #