Last active
October 7, 2020 22:39
-
-
Save kapulkin/6596caf357b0ef12425f50584df1945d to your computer and use it in GitHub Desktop.
Extracting segmentation masks from coco poly or RLE format into numpy images
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
import json | |
import cv2 | |
import os | |
import random | |
import numpy as np | |
from pycocotools import mask as cocoMask | |
class CocoDataset: | |
def __init__(self, annotationFilePath: str, imagesDir: str, masksDir: str, shuffle: bool = True): | |
with open(annotationFilePath, 'r') as annotationFile: | |
annotations = json.load(annotationFile) | |
self.images = annotations["images"] | |
self.annotations = {} | |
for annotation in annotations["annotations"]: | |
id = annotation["image_id"] | |
if id in self.annotations: | |
imageAnnotations = self.annotations[id] | |
else: | |
imageAnnotations = [] | |
self.annotations[id] = imageAnnotations | |
imageAnnotations.append(annotation) | |
self.imagesDir = imagesDir | |
self.masksDir = masksDir | |
self.indices = list(range(len(annotations["images"]))) | |
if shuffle: | |
random.shuffle(self.indices) | |
self.index = 0 | |
def readBatch(self, batchSize: int): | |
batch = [] | |
while self.index < len(self.indices) and len(batch) < batchSize: | |
datasetIndex = self.indices[self.index] | |
imageInfo = self.images[datasetIndex] | |
imageName = imageInfo["file_name"] | |
image = cv2.imread(os.path.join(self.imagesDir, imageName)) | |
annotations = self.annotations[imageInfo["id"]] | |
commonMask = None | |
for annotation in annotations: | |
segmentation = annotation["segmentation"] | |
isRle = annotation["iscrowd"] | |
width = imageInfo["width"] | |
height = imageInfo["height"] | |
rle = cocoMask.frPyObjects(segmentation, height, width) | |
mask = cocoMask.decode(rle) | |
if len(mask.shape) == 3: | |
mask = np.bitwise_or.reduce(mask, 2) | |
if commonMask is None: | |
commonMask = mask | |
else: | |
commonMask = np.logical_or(commonMask, mask) | |
commonMask = commonMask.astype(np.uint8) | |
maskName = os.path.splitext(imageName)[0] + ".png" | |
fileMask = cv2.imread(os.path.join(self.masksDir, maskName)) | |
if image is not None and commonMask is not None: | |
batch.append([image, commonMask, fileMask]) | |
self.index += 1 | |
return batch |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment