setup_conda.sh

setup_conda.sh

# -------------
# Author: Karen Ng <mailto:karen.yyng@gmail.com>
# dependency: wget
# usage:
# source install_py${PYTHON_VERSION}_${INTEL_PYTHON_VERSION}.sh
# 
# Copyright (c) 2017, Intel Corporation
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# 
#     * Redistributions of source code must retain the above copyright notice,
#       this list of conditions and the following disclaimer.
#     * Redistributions in binary form must reproduce the above copyright
#       notice, this list of conditions and the following disclaimer in the
#       documentation and/or other materials provided with the distribution.
#     * Neither the name of Intel Corporation nor the names of its contributors
#       may be used to endorse or promote products derived from this software
#       without specific prior written permission.
# 
# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
# AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
# IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
# DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE
# FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
# DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
# SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
# CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
# OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
# OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
#
# You need to set the following environmental variables to use this properly:
# 
# export CONDA_ENV=some_name
# export INTEL_PYTHON_VERSION=2018.0.0
#### PY_VERSION values can be 35 or 27
# export PY_VERSION=35   
#### PY_DOT_ERSION values can be 3.5 or 2.7
# export PY_DOT_VERSION=3.5
#### PY_DOT_ERSION values can be 2 or 3
# export PY_MAJOR_VERSION=3
#### EDITION can be `core` or `full`
# export EDITION=core
# if [[  $NERSC_HOST == "cori"  ]]; then
#   # use a directory where you have write-permission such as $SCRATCH or /global/common/project_name
#   ENV_DIR=$SCRATCH
# else
#   export DIR=$HOME/miniconda${PY_MAJOR_VERSION}
#   export ENV_DIR=$DIR
# fi
#
# -------------
if [[ -z $CONDA_ENV ]]; then 
  echo "$CONDA_ENV is not defined. Quitting installation script."
  exit 1 
fi 

echo "Installing Intel Python version $INTEL_PYTHON_VERSION"
if echo "$(uname -a)" | grep Linux ; then
  OS=Linux
else
  OS=MacOSX 
fi
echo "Running on the OS = ${OS}"

export ACCEPT_INTEL_PYTHON_EULA=yes
echo 'Accepting INTEL PYTHON EULA'

# set up a self-contained conda if we are on a machine other than Cori
if [[ ! -x $HOME/miniconda3/bin/conda ]] && [[ $NERSC_HOST != "cori" ]]; then
  [ -f Miniconda3-latest-${OS}-x86_64.sh ] || wget "https://repo.continuum.io/miniconda/Miniconda3-latest-${OS}-x86_64.sh"
  bash ./Miniconda3-latest-${OS}-x86_64.sh -b -p $DIR -f 
  echo "Installing miniconda at $DIR"
fi

# Cori comes with its anaconda installation so we just have to load it up 
if [[  $NERSC_HOST == "cori" ]]; then
  # DIR="/global/common/cori/software/python/${PY_DOT_VERSION}-anaconda"
  module load "python/${PY_DOT_VERSION}-anaconda"  
  echo "module load python/${PY_DOT_VERSION}-anaconda" 
  CONDA=conda
else
  export CONDA=$DIR/bin/conda
fi 

# tell conda where to find the envrionments 
if [[ -f $HOME/.condarc ]]; then
  mv $HOME/.condarc $HOME/.condarc.backup
  echo 'Backing up $HOME/.condarc to $HOME/.condarc.backup'
fi
$CONDA config --add channels intel
echo 'Finished adding Intel channel in conda'
echo 'Adding proper environment paths for environment'
echo $'envs_dirs:' >> ${HOME}/.condarc_${CONDA_ENV}
echo "  - ${ENV_DIR}/py${PY_VERSION}_envs" >> ${HOME}/.condarc_${CONDA_ENV}
echo "Appending envs_dirs at $ENV_DIR/py35_envs to ~/.condarc_${CONDA_ENV} and ~/.condarc"
cp ${HOME}/.condarc_${CONDA_ENV} ${HOME}/.condarc

if [[ ! -d $ENV_DIR/py${PY_VERSION}_envs ]]; then
  mkdir $ENV_DIR/py${PY_VERSION}_envs
  echo "Creating directory py${PY_VERSION}_envs at $ENV_DIR"
fi

echo "Installing libraries for $ENV_DIR"
$CONDA create -y -c intel -n $CONDA_ENV intelpython${PY_MAJOR_VERSION}_${EDITION}=$INTEL_PYTHON_VERSION python=${PY_MAJOR_VERSION}