gistfile1.txt

sudo apt-get install gnome-devel
sudo apt-get install python3-dev
sudo apt-get install libcr-dev mpich mpich-doc
sudo apt-get install libncursesw5-dev ncurses-base ncurses-bin ncurses-term

sudo apt-get install gnome-devel python3-dev libcr-dev mpich mpich-doc libncursesw5-dev ncurses-base ncurses-bin ncurses-term

export PYTHON3PATH=`which python3`
export HOME_DIR=`pwd`

### install MPIch ###
wget http://www.mpich.org/static/downloads/3.3.1/mpich-3.3.1.tar.gz
tar zxf mpich-3.3.1.tar.gz
mv mpich-3.3.1 mpi
mkdir mpi_build
cd mpi
./configure --prefix=$HOME_DIR/mpi_build
make
make install
export PATH=$HOME_DIR/mpi/bin:$PATH
# test by typing mpiexec -n 2 echo 'hi'

cd $HOME_DIR
### install interviews ###
wget https://neuron.yale.edu/ftp/neuron/versions/v7.6/iv-19.tar.gz
tar zxf iv-19.tar.gz
mv iv-19 iv
cd iv
sh ./build.sh
./configure --prefix=$HOME_DIR/iv
make
make install

cd $HOME_DIR
### install neuron ###
wget https://neuron.yale.edu/ftp/neuron/versions/v7.6/7.6.2/nrn-7.6.2.tar.gz
tar zxf nrn-7.6.2.tar.gz
mv nrn-7.6 nrn
cd nrn
./configure --prefix=$HOME_DIR/nrn/ --with-iv=$HOME_DIR/iv --with-nrnpython=$PYTHON3PATH --with-paranrn
make
make install

#export PYTHONPATH=$PYTHON3PATH
export PATH=$HOME_DIR/iv/x86_64/bin:$HOME_DIR/nrn/x86_64/bin:$PATH

cd src/nrnpython/
sudo python setup.py install

export LD_LIBRARY_PATH=/usr/local/lib:$HOME_DIR/nrn/x86_64/lib:$HOME_DIR/iv/x86_64/lib/:$LD_LIBRARY_PATH
export PYTHONPATH=/usr/local/lib/python3/dist-packages:$PYTHONPATH