python-pyvcf3 test log

python-pyvcf3-v0.5.0.r290.g2d841f7-1-x86_64-check.log

running pytest
/usr/lib/python3.11/site-packages/setuptools/command/test.py:194: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
!!

        ********************************************************************************
        Requirements should be satisfied by a PEP 517 installer.
        If you are using pip, you can try `pip install --use-pep517`.
        ********************************************************************************

!!
  ir_d = dist.fetch_build_eggs(dist.install_requires)
WARNING: The wheel package is not available.
/usr/lib/python3.11/site-packages/setuptools/command/test.py:195: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
!!

        ********************************************************************************
        Requirements should be satisfied by a PEP 517 installer.
        If you are using pip, you can try `pip install --use-pep517`.
        ********************************************************************************

!!
  tr_d = dist.fetch_build_eggs(dist.tests_require or [])
WARNING: The wheel package is not available.
/usr/lib/python3.11/site-packages/setuptools/command/test.py:196: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
!!

        ********************************************************************************
        Requirements should be satisfied by a PEP 517 installer.
        If you are using pip, you can try `pip install --use-pep517`.
        ********************************************************************************

!!
  er_d = dist.fetch_build_eggs(
WARNING: The wheel package is not available.
running egg_info
writing PyVCF3.egg-info/PKG-INFO
writing dependency_links to PyVCF3.egg-info/dependency_links.txt
writing entry points to PyVCF3.egg-info/entry_points.txt
writing requirements to PyVCF3.egg-info/requires.txt
writing top-level names to PyVCF3.egg-info/top_level.txt
reading manifest file 'PyVCF3.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSE'
writing manifest file 'PyVCF3.egg-info/SOURCES.txt'
running build_ext
building 'vcf.cparse' extension
gcc -DNDEBUG -g -fwrapv -O3 -Wall -march=x86-64 -mtune=generic -O3 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=2 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection -g -ffile-prefix-map=/build/python/src=/usr/src/debug/python -flto=auto -ffat-lto-objects -march=x86-64 -mtune=generic -O3 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=2 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection -g -ffile-prefix-map=/build/python/src=/usr/src/debug/python -flto=auto -march=x86-64 -mtune=generic -O3 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=2 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection -g -ffile-prefix-map=/build/python/src=/usr/src/debug/python -flto=auto -march=x86-64 -mtune=generic -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=2 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection -fPIC -I/usr/include/python3.11 -c vcf/cparse.c -o build/temp.linux-x86_64-cpython-311/vcf/cparse.o
gcc -shared -Wl,-O1,--sort-common,--as-needed,-z,relro,-z,now -flto=auto -Wl,-O1,--sort-common,--as-needed,-z,relro,-z,now -flto=auto -Wl,-O1,--sort-common,--as-needed,-z,relro,-z,now -march=x86-64 -mtune=generic -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=2 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection build/temp.linux-x86_64-cpython-311/vcf/cparse.o -L/usr/lib -o /build/python-pyvcf3/src/PyVCF3/vcf/cparse.cpython-311-x86_64-linux-gnu.so
============================= test session starts ==============================
platform linux -- Python 3.11.5, pytest-7.4.3, pluggy-1.3.0
rootdir: /build/python-pyvcf3/src/PyVCF3
collected 104 items

vcf/test/test_vcf.py ................................................... [ 49%]
.....................sssssss............ss.ss........                    [100%]

=============================== warnings summary ===============================
vcf/parser.py:380
  /build/python-pyvcf3/src/PyVCF3/vcf/parser.py:380: DeprecationWarning: invalid escape sequence '\['
    self._alt_pattern = re.compile("[\[\]]")

vcf/parser.py:654
  /build/python-pyvcf3/src/PyVCF3/vcf/parser.py:654: DeprecationWarning: invalid escape sequence '\['
    remoteOrientation = re.search("\[", str) is not None

-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
================== 93 passed, 11 skipped, 2 warnings in 2.30s ==================