Created
December 12, 2016 09:00
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| dpkg-checkbuilddeps: error: Unmet build dependencies: python3-pytools | |
| [1;33mW: Unmet build-dependency in source[0m | |
| dpkg-buildpackage: info: source package snakemake | |
| dpkg-buildpackage: info: source version 3.9.0+dfsg-1 | |
| dpkg-buildpackage: info: source distribution UNRELEASED | |
| dpkg-buildpackage: info: source changed by Kevin Murray <kdmfoss@gmail.com> | |
| dpkg-source --before-build snakemake | |
| dpkg-source: info: applying 0001-Use-the-inbuild-sphinx.ext.napoleon.patch | |
| dpkg-source: info: applying 0003-Use-debian-s-mathjax-package.patch | |
| dpkg-source: info: applying 0003-Compat-fix.patch | |
| fakeroot debian/rules clean | |
| dh clean --with python3,sphinxdoc --buildsystem=pybuild --parallel | |
| dh_testdir -O--buildsystem=pybuild -O--parallel | |
| dh_auto_clean -O--buildsystem=pybuild -O--parallel | |
| I: pybuild base:184: python3.5 setup.py clean | |
| running clean | |
| removing '/home/user/prog/debian/pkgs/snakemake/.pybuild/pythonX.Y_3.5/build' (and everything under it) | |
| 'build/bdist.linux-x86_64' does not exist -- can't clean it | |
| 'build/scripts-3.5' does not exist -- can't clean it | |
| dh_clean -O--buildsystem=pybuild -O--parallel | |
| dpkg-source -b snakemake | |
| dpkg-source: info: using source format '3.0 (quilt)' | |
| dpkg-source: info: building snakemake using existing ./snakemake_3.9.0+dfsg.orig.tar.gz | |
| dpkg-source: info: building snakemake in snakemake_3.9.0+dfsg-1.debian.tar.xz | |
| dpkg-source: info: building snakemake in snakemake_3.9.0+dfsg-1.dsc | |
| dpkg-genbuildinfo --build=source | |
| dpkg-genchanges --build=source >../snakemake_3.9.0+dfsg-1_source.changes | |
| dpkg-genchanges: info: including full source code in upload | |
| dpkg-source --after-build snakemake | |
| dpkg-source: info: unapplying 0003-Compat-fix.patch | |
| dpkg-source: info: unapplying 0003-Use-debian-s-mathjax-package.patch | |
| dpkg-source: info: unapplying 0001-Use-the-inbuild-sphinx.ext.napoleon.patch | |
| dpkg-buildpackage: info: full upload (original source is included) | |
| [0mI: Copying COW directory[0m | |
| [0mI: forking: rm -rf /var/cache/pbuilder/build/cow.876[0m | |
| [0mI: forking: cp -al /var/cache/pbuilder/base.cow /var/cache/pbuilder/build/cow.876[0m | |
| [0mI: unlink for ilistfile /var/cache/pbuilder/build/cow.876/.ilist failed, it didn't exist?[0m | |
| [0mI: forking: chroot /var/cache/pbuilder/build/cow.876 cowdancer-ilistcreate /.ilist 'find . -xdev -path ./home -prune -o \( \( -type l -o -type f \) -a -links +1 -print0 \) | xargs -0 stat --format '%d %i ''[0m | |
| [0mI: Invoking pbuilder[0m | |
| [0mI: forking: pbuilder build --debbuildopts --debbuildopts --buildplace /var/cache/pbuilder/build/cow.876 --buildresult /home/user/prog/debian/pkgs --no-targz --internal-chrootexec 'chroot /var/cache/pbuilder/build/cow.876 cow-shell' /home/kevin/prog/debian/pkgs/snakemake_3.9.0+dfsg-1.dsc[0m | |
| W: /home/user/.pbuilderrc does not exist | |
| [0mI: Running in no-targz mode[0m | |
| [0mI: using fakeroot in build.[0m | |
| [0mI: pbuilder: network access will be disabled during build[0m | |
| [0mI: Current time: Mon Dec 12 12:42:14 AEDT 2016[0m | |
| [0mI: pbuilder-time-stamp: 1481506934[0m | |
| [0mI: copying local configuration[0m | |
| [0mI: mounting /proc filesystem[0m | |
| [0mI: mounting /sys filesystem[0m | |
| [0mI: mounting /run/shm filesystem[0m | |
| [0mI: mounting /dev/pts filesystem[0m | |
| [0mI: Mounting /dev/shm[0m | |
| [0mI: policy-rc.d already exists[0m | |
| [0mI: using eatmydata during job[0m | |
| [0mI: Setting up ccache[0m | |
| [0mI: Copying source file[0m | |
| [0mI: copying [/home/user/prog/debian/pkgs/snakemake_3.9.0+dfsg-1.dsc][0m | |
| [0mI: copying [/home/user/prog/debian/pkgs/snakemake_3.9.0+dfsg.orig.tar.gz][0m | |
| [0mI: copying [/home/user/prog/debian/pkgs/snakemake_3.9.0+dfsg-1.debian.tar.xz][0m | |
| [0mI: Extracting source[0m | |
| dpkg-source: warning: extracting unsigned source package (snakemake_3.9.0+dfsg-1.dsc) | |
| dpkg-source: info: extracting snakemake in snakemake-3.9.0+dfsg | |
| dpkg-source: info: unpacking snakemake_3.9.0+dfsg.orig.tar.gz | |
| dpkg-source: info: unpacking snakemake_3.9.0+dfsg-1.debian.tar.xz | |
| dpkg-source: info: applying 0001-Use-the-inbuild-sphinx.ext.napoleon.patch | |
| dpkg-source: info: applying 0003-Use-debian-s-mathjax-package.patch | |
| dpkg-source: info: applying 0003-Compat-fix.patch | |
| [0mI: Installing the build-deps[0m | |
| -> Attempting to satisfy build-dependencies | |
| -> Creating pbuilder-satisfydepends-dummy package | |
| Package: pbuilder-satisfydepends-dummy | |
| Version: 0.invalid.0 | |
| Architecture: amd64 | |
| Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org> | |
| Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder | |
| This package was created automatically by pbuilder to satisfy the | |
| build-dependencies of the package being currently built. | |
| Depends: debhelper (>= 9), dh-python, python3 (>= 3.2), python3-nose, python3-pytools, python3-rpy2, python3-setuptools, python3-sphinx, python3-sphinx-bootstrap-theme, python3-wrapt, python3-yaml, ca-certificates | |
| dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. | |
| Selecting previously unselected package pbuilder-satisfydepends-dummy. | |
| (Reading database ... 11669 files and directories currently installed.) | |
| Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... | |
| Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... | |
| dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: | |
| pbuilder-satisfydepends-dummy depends on debhelper (>= 9); however: | |
| Package debhelper is not installed. | |
| pbuilder-satisfydepends-dummy depends on dh-python; however: | |
| Package dh-python is not installed. | |
| pbuilder-satisfydepends-dummy depends on python3 (>= 3.2); however: | |
| Package python3 is not installed. | |
| pbuilder-satisfydepends-dummy depends on python3-nose; however: | |
| Package python3-nose is not installed. | |
| pbuilder-satisfydepends-dummy depends on python3-pytools; however: | |
| Package python3-pytools is not installed. | |
| pbuilder-satisfydepends-dummy depends on python3-rpy2; however: | |
| Package python3-rpy2 is not installed. | |
| pbuilder-satisfydepends-dummy depends on python3-setuptools; however: | |
| Package python3-setuptools is not installed. | |
| pbuilder-satisfydepends-dummy depends on python3-sphinx; however: | |
| Package python3-sphinx is not installed. | |
| pbuilder-satisfydepends-dummy depends on python3-sphinx-bootstrap-theme; however: | |
| Package python3-sphinx-bootstrap-theme is not installed. | |
| pbuilder-satisfydepends-dummy depends on python3-wrapt; however: | |
| Package python3-wrapt is not installed. | |
| pbuilder-satisfydepends-dummy depends on python3-yaml; however: | |
| Package python3-yaml is not installed. | |
| pbuilder-satisfydepends-dummy depends on ca-certificates; however: | |
| Package ca-certificates is not installed. | |
| Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... | |
| Reading package lists... | |
| Building dependency tree... | |
| Reading state information... | |
| Initializing package states... | |
| Writing extended state information... | |
| Building tag database... | |
| pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) | |
| pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) | |
| The following NEW packages will be installed: | |
| autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docutils-common{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas-common{a} libblas3{a} libbsd0{a} libcairo2{a} libcroco3{a} libcurl3{a} libdatrie1{a} libexpat1{a} libffi6{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libgfortran3{a} libglib2.0-0{a} libgnutls30{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhogweed4{a} libice6{a} libicu57{a} libidn11{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} libldap-2.4-2{a} libldap-common{a} libmagic-mgc{a} libmagic1{a} libmpdec2{a} libnettle6{a} libnghttp2-14{a} libp11-kit0{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libpipeline1{a} libpixman-1-0{a} libpng16-16{a} libpython3-stdlib{a} libpython3.5-minimal{a} libpython3.5-stdlib{a} libreadline7{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libsm6{a} libssh2-1{a} libssl1.1{a} libtasn1-6{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff5{a} libtimedate-perl{a} libtk8.6{a} libtool{a} libunistring0{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxss1{a} libxt6{a} libyaml-0-2{a} m4{a} man-db{a} mime-support{a} openssl{a} po-debconf{a} python-babel-localedata{a} python3{a} python3-alabaster{a} python3-appdirs{a} python3-babel{a} python3-decorator{a} python3-docutils{a} python3-imagesize{a} python3-jinja2{a} python3-markupsafe{a} python3-minimal{a} python3-nose{a} python3-numpy{a} python3-pkg-resources{a} python3-pygments{a} python3-pytools{a} python3-roman{a} python3-rpy2{a} python3-setuptools{a} python3-six{a} python3-sphinx{a} python3-sphinx-bootstrap-theme{a} python3-tz{a} python3-wrapt{a} python3-yaml{a} python3.5{a} python3.5-minimal{a} r-base-core{a} readline-common{a} sgml-base{a} sphinx-common{a} ucf{a} unzip{a} x11-common{a} xdg-utils{a} xml-core{a} zip{a} | |
| The following packages are RECOMMENDED but will NOT be installed: | |
| curl javascript-common krb5-locales libfile-mimeinfo-perl libglib2.0-data libltdl-dev libmail-sendmail-perl libnet-dbus-perl libsasl2-modules libx11-protocol-perl lynx-cur python3-pil r-base-dev r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs | |
| 0 packages upgraded, 144 newly installed, 0 to remove and 0 not upgraded. | |
| Need to get 73.4 MB of archives. After unpacking 224 MB will be used. | |
| Writing extended state information... | |
| Get: 1 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 groff-base amd64 1.22.3-8 [1162 kB] | |
| Get: 2 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libbsd0 amd64 0.8.3-1 [83.0 kB] | |
| Get: 3 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 bsdmainutils amd64 9.0.12 [185 kB] | |
| Get: 4 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libpipeline1 amd64 1.4.1-2 [27.6 kB] | |
| Get: 5 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 man-db amd64 2.7.5-2 [1001 kB] | |
| Get: 6 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libexpat1 amd64 2.2.0-1 [82.0 kB] | |
| Get: 7 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libpng16-16 amd64 1.6.26-6 [280 kB] | |
| Get: 8 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libfreetype6 amd64 2.6.3-3+b1 [437 kB] | |
| Get: 9 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 ucf all 3.0036 [70.2 kB] | |
| Get: 10 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 fonts-dejavu-core all 2.37-1 [1068 kB] | |
| Get: 11 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 fontconfig-config all 2.11.0-6.7 [271 kB] | |
| Get: 12 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libfontconfig1 amd64 2.11.0-6.7 [331 kB] | |
| Get: 13 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 fontconfig amd64 2.11.0-6.7 [403 kB] | |
| Get: 14 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 x11-common all 1:7.7+18 [251 kB] | |
| Get: 15 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libice6 amd64 2:1.0.9-1+b1 [58.8 kB] | |
| Get: 16 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libsm6 amd64 2:1.2.2-1+b1 [33.6 kB] | |
| Get: 17 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libxau6 amd64 1:1.0.8-1 [20.7 kB] | |
| Get: 18 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libxdmcp6 amd64 1:1.1.2-1.1 [26.2 kB] | |
| Get: 19 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libxcb1 amd64 1.12-1 [133 kB] | |
| Get: 20 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libx11-data all 2:1.6.4-2 [290 kB] | |
| Get: 21 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libx11-6 amd64 2:1.6.4-2 [746 kB] | |
| Get: 22 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libxext6 amd64 2:1.3.3-1 [52.7 kB] | |
| Get: 23 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] | |
| Get: 24 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libxft2 amd64 2.3.2-1 [55.4 kB] | |
| Get: 25 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libxss1 amd64 1:1.2.2-1 [17.5 kB] | |
| Get: 26 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libssl1.1 amd64 1.1.0c-2 [1337 kB] | |
| Get: 27 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libpython3.5-minimal amd64 3.5.2-8 [572 kB] | |
| Get: 28 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 python3.5-minimal amd64 3.5.2-8 [1687 kB] | |
| Get: 29 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 python3-minimal amd64 3.5.1-4 [35.3 kB] | |
| Get: 30 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 mime-support all 3.60 [36.7 kB] | |
| Get: 31 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libmpdec2 amd64 2.4.2-1 [85.2 kB] | |
| Get: 32 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 readline-common all 7.0-1 [70.4 kB] | |
| Get: 33 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libreadline7 amd64 7.0-1 [151 kB] | |
| Get: 34 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libpython3.5-stdlib amd64 3.5.2-8 [2167 kB] | |
| Get: 35 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 python3.5 amd64 3.5.2-8 [227 kB] | |
| Get: 36 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.5.1-4 [18.6 kB] | |
| Get: 37 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 dh-python all 2.20160818 [83.0 kB] | |
| Get: 38 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 python3 amd64 3.5.1-4 [21.6 kB] | |
| Get: 39 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 sgml-base all 1.29 [14.8 kB] | |
| Get: 40 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libjbig0 amd64 2.1-3.1 [30.7 kB] | |
| Get: 41 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libmagic-mgc amd64 1:5.29-1 [219 kB] | |
| Get: 42 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libmagic1 amd64 1:5.29-1 [110 kB] | |
| Get: 43 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 file amd64 1:5.29-1 [63.5 kB] | |
| Get: 44 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 gettext-base amd64 0.19.8.1-1 [121 kB] | |
| Get: 45 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libnettle6 amd64 3.3-1 [191 kB] | |
| Get: 46 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libhogweed4 amd64 3.3-1 [136 kB] | |
| Get: 47 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libidn11 amd64 1.33-1 [115 kB] | |
| Get: 48 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libffi6 amd64 3.2.1-6 [20.4 kB] | |
| Get: 49 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libp11-kit0 amd64 0.23.2-5 [111 kB] | |
| Get: 50 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libtasn1-6 amd64 4.9-4 [50.0 kB] | |
| Get: 51 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libgnutls30 amd64 3.5.7-2 [887 kB] | |
| Get: 52 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libkeyutils1 amd64 1.5.9-9 [12.4 kB] | |
| Get: 53 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libkrb5support0 amd64 1.15-1 [61.7 kB] | |
| Get: 54 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libk5crypto3 amd64 1.15-1 [119 kB] | |
| Get: 55 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libkrb5-3 amd64 1.15-1 [311 kB] | |
| Get: 56 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.15-1 [154 kB] | |
| Get: 57 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libsasl2-modules-db amd64 2.1.27~101-g0780600+dfsg-1 [68.1 kB] | |
| Get: 58 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libsasl2-2 amd64 2.1.27~101-g0780600+dfsg-1 [105 kB] | |
| Get: 59 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libldap-common all 2.4.44+dfsg-2 [84.4 kB] | |
| Get: 60 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libldap-2.4-2 amd64 2.4.44+dfsg-2 [218 kB] | |
| Get: 61 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libicu57 amd64 57.1-5 [7700 kB] | |
| Get: 62 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libxml2 amd64 2.9.4+dfsg1-2.1 [919 kB] | |
| Get: 63 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libsigsegv2 amd64 2.10-5 [28.9 kB] | |
| Get: 64 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 m4 amd64 1.4.17-5 [255 kB] | |
| Get: 65 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 autoconf all 2.69-10 [338 kB] | |
| Get: 66 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 autotools-dev all 20161112.1 [73.4 kB] | |
| Get: 67 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 automake all 1:1.15-5 [733 kB] | |
| Get: 68 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 autopoint all 0.19.8.1-1 [433 kB] | |
| Get: 69 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 openssl amd64 1.1.0c-2 [737 kB] | |
| Get: 70 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 ca-certificates all 20161130 [203 kB] | |
| Get: 71 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libtool all 2.4.6-2 [545 kB] | |
| Get: 72 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 dh-autoreconf all 12 [15.8 kB] | |
| Get: 73 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libarchive-zip-perl all 1.59-1 [95.5 kB] | |
| Get: 74 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libfile-stripnondeterminism-perl all 0.028-1 [14.6 kB] | |
| Get: 75 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libtimedate-perl all 2.3000-2 [42.2 kB] | |
| Get: 76 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 dh-strip-nondeterminism all 0.028-1 [9020 B] | |
| Get: 77 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libglib2.0-0 amd64 2.50.2-2 [2690 kB] | |
| Get: 78 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libcroco3 amd64 0.6.11-2 [143 kB] | |
| Get: 79 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libunistring0 amd64 0.9.6+really0.9.3-0.1 [279 kB] | |
| Get: 80 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 gettext amd64 0.19.8.1-1 [1493 kB] | |
| Get: 81 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 intltool-debian all 0.35.0+20060710.4 [26.3 kB] | |
| Get: 82 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 po-debconf all 1.0.20 [247 kB] | |
| Get: 83 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 debhelper all 10.2.2 [826 kB] | |
| Get: 84 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 xml-core all 0.17 [23.2 kB] | |
| Get: 85 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 docutils-common all 0.12+dfsg-2 [187 kB] | |
| Get: 86 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libblas-common amd64 3.6.1-2 [13.9 kB] | |
| Get: 87 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libgfortran3 amd64 6.2.1-5 [265 kB] | |
| Get: 88 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libblas3 amd64 3.6.1-2 [157 kB] | |
| Get: 89 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libpixman-1-0 amd64 0.34.0-1 [530 kB] | |
| Get: 90 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libxcb-render0 amd64 1.12-1 [105 kB] | |
| Get: 91 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libxcb-shm0 amd64 1.12-1 [95.9 kB] | |
| Get: 92 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libcairo2 amd64 1.14.6-1.1 [768 kB] | |
| Get: 93 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libnghttp2-14 amd64 1.17.0-1 [81.0 kB] | |
| Get: 94 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-1 [60.0 kB] | |
| Get: 95 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libssh2-1 amd64 1.7.0-1 [138 kB] | |
| Get: 96 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libcurl3 amd64 7.51.0-1 [286 kB] | |
| Get: 97 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libdatrie1 amd64 0.2.10-4 [36.1 kB] | |
| Get: 98 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libgraphite2-3 amd64 1.3.9-2 [76.9 kB] | |
| Get: 99 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libharfbuzz0b amd64 1.2.7-1+b1 [612 kB] | |
| Get: 100 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libjpeg62-turbo amd64 1:1.5.1-2 [134 kB] | |
| Get: 101 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libjs-jquery all 3.1.1-1 [154 kB] | |
| Get: 102 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libjs-underscore all 1.8.3~dfsg-1 [63.8 kB] | |
| Get: 103 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libjs-sphinxdoc all 1.4.9-1 [69.5 kB] | |
| Get: 104 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 liblapack3 amd64 3.6.1-2 [1963 kB] | |
| Get: 105 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libthai-data all 0.1.25-2 [165 kB] | |
| Get: 106 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libthai0 amd64 0.1.25-2 [51.8 kB] | |
| Get: 107 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libpango-1.0-0 amd64 1.40.3-3 [314 kB] | |
| Get: 108 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libpangoft2-1.0-0 amd64 1.40.3-3 [200 kB] | |
| Get: 109 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libpangocairo-1.0-0 amd64 1.40.3-3 [188 kB] | |
| Get: 110 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libpaper1 amd64 1.1.24+nmu5 [21.6 kB] | |
| Get: 111 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libpaper-utils amd64 1.1.24+nmu5 [17.6 kB] | |
| Get: 112 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libtcl8.6 amd64 8.6.6+dfsg-1 [984 kB] | |
| Get: 113 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libtiff5 amd64 4.0.7-2 [230 kB] | |
| Get: 114 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libtk8.6 amd64 8.6.6-1 [752 kB] | |
| Get: 115 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libxt6 amd64 1:1.1.5-1 [188 kB] | |
| Get: 116 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libyaml-0-2 amd64 0.1.7-2 [47.6 kB] | |
| Get: 117 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 python-babel-localedata all 2.3.4+dfsg.1-2 [3402 kB] | |
| Get: 118 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 python3-appdirs all 1.4.0-2 [11.1 kB] | |
| Get: 119 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 python3-pkg-resources all 28.7.1-1 [135 kB] | |
| Get: 120 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 python3-tz all 2016.7-0.2 [27.0 kB] | |
| Get: 121 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 python3-babel all 2.3.4+dfsg.1-2 [82.0 kB] | |
| Get: 122 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 python3-decorator all 4.0.6-1 [12.8 kB] | |
| Get: 123 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 python3-roman all 2.0.0-2 [8226 B] | |
| Get: 124 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 python3-docutils all 0.12+dfsg-2 [359 kB] | |
| Get: 125 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 python3-imagesize all 0.7.1-1 [3886 B] | |
| Get: 126 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 python3-markupsafe amd64 0.23-3 [14.8 kB] | |
| Get: 127 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 python3-jinja2 all 2.8-1 [105 kB] | |
| Get: 128 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 python3-nose all 1.3.7-2 [132 kB] | |
| Get: 129 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 python3-numpy amd64 1:1.11.2-1 [1796 kB] | |
| Get: 130 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 python3-pygments all 2.1.3+dfsg-1 [532 kB] | |
| Get: 131 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 python3-six all 1.10.0-3 [14.4 kB] | |
| Get: 132 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 python3-pytools all 2016.2.6-1 [34.4 kB] | |
| Get: 133 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 zip amd64 3.0-11 [229 kB] | |
| Get: 134 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 unzip amd64 6.0-20 [161 kB] | |
| Get: 135 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 xdg-utils all 1.1.1-1 [71.1 kB] | |
| Get: 136 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 r-base-core amd64 3.3.2-1 [21.1 MB] | |
| Get: 137 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 python3-rpy2 amd64 2.8.4-1 [138 kB] | |
| Get: 138 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 python3-setuptools all 28.7.1-1 [137 kB] | |
| Get: 139 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 python3-alabaster all 0.7.8-1 [18.4 kB] | |
| Get: 140 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 sphinx-common all 1.4.9-1 [350 kB] | |
| Get: 141 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 python3-sphinx all 1.4.9-1 [433 kB] | |
| Get: 142 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 python3-sphinx-bootstrap-theme all 0.4.8-1 [394 kB] | |
| Get: 143 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 python3-wrapt amd64 1.9.0-2 [31.5 kB] | |
| Get: 144 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 python3-yaml amd64 3.12-1 [108 kB] | |
| Fetched 73.4 MB in 0s (85.3 MB/s) | |
| debconf: delaying package configuration, since apt-utils is not installed | |
| Selecting previously unselected package groff-base. | |
| (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11669 files and directories currently installed.) | |
| Preparing to unpack .../00-groff-base_1.22.3-8_amd64.deb ... | |
| Unpacking groff-base (1.22.3-8) ... | |
| Selecting previously unselected package libbsd0:amd64. | |
| Preparing to unpack .../01-libbsd0_0.8.3-1_amd64.deb ... | |
| Unpacking libbsd0:amd64 (0.8.3-1) ... | |
| Selecting previously unselected package bsdmainutils. | |
| Preparing to unpack .../02-bsdmainutils_9.0.12_amd64.deb ... | |
| Unpacking bsdmainutils (9.0.12) ... | |
| Selecting previously unselected package libpipeline1:amd64. | |
| Preparing to unpack .../03-libpipeline1_1.4.1-2_amd64.deb ... | |
| Unpacking libpipeline1:amd64 (1.4.1-2) ... | |
| Selecting previously unselected package man-db. | |
| Preparing to unpack .../04-man-db_2.7.5-2_amd64.deb ... | |
| Unpacking man-db (2.7.5-2) ... | |
| Selecting previously unselected package libexpat1:amd64. | |
| Preparing to unpack .../05-libexpat1_2.2.0-1_amd64.deb ... | |
| Unpacking libexpat1:amd64 (2.2.0-1) ... | |
| Selecting previously unselected package libpng16-16:amd64. | |
| Preparing to unpack .../06-libpng16-16_1.6.26-6_amd64.deb ... | |
| Unpacking libpng16-16:amd64 (1.6.26-6) ... | |
| Selecting previously unselected package libfreetype6:amd64. | |
| Preparing to unpack .../07-libfreetype6_2.6.3-3+b1_amd64.deb ... | |
| Unpacking libfreetype6:amd64 (2.6.3-3+b1) ... | |
| Selecting previously unselected package ucf. | |
| Preparing to unpack .../08-ucf_3.0036_all.deb ... | |
| Moving old data out of the way | |
| Unpacking ucf (3.0036) ... | |
| Selecting previously unselected package fonts-dejavu-core. | |
| Preparing to unpack .../09-fonts-dejavu-core_2.37-1_all.deb ... | |
| Unpacking fonts-dejavu-core (2.37-1) ... | |
| Selecting previously unselected package fontconfig-config. | |
| Preparing to unpack .../10-fontconfig-config_2.11.0-6.7_all.deb ... | |
| Unpacking fontconfig-config (2.11.0-6.7) ... | |
| Selecting previously unselected package libfontconfig1:amd64. | |
| Preparing to unpack .../11-libfontconfig1_2.11.0-6.7_amd64.deb ... | |
| Unpacking libfontconfig1:amd64 (2.11.0-6.7) ... | |
| Selecting previously unselected package fontconfig. | |
| Preparing to unpack .../12-fontconfig_2.11.0-6.7_amd64.deb ... | |
| Unpacking fontconfig (2.11.0-6.7) ... | |
| Selecting previously unselected package x11-common. | |
| Preparing to unpack .../13-x11-common_1%3a7.7+18_all.deb ... | |
| Unpacking x11-common (1:7.7+18) ... | |
| Selecting previously unselected package libice6:amd64. | |
| Preparing to unpack .../14-libice6_2%3a1.0.9-1+b1_amd64.deb ... | |
| Unpacking libice6:amd64 (2:1.0.9-1+b1) ... | |
| Selecting previously unselected package libsm6:amd64. | |
| Preparing to unpack .../15-libsm6_2%3a1.2.2-1+b1_amd64.deb ... | |
| Unpacking libsm6:amd64 (2:1.2.2-1+b1) ... | |
| Selecting previously unselected package libxau6:amd64. | |
| Preparing to unpack .../16-libxau6_1%3a1.0.8-1_amd64.deb ... | |
| Unpacking libxau6:amd64 (1:1.0.8-1) ... | |
| Selecting previously unselected package libxdmcp6:amd64. | |
| Preparing to unpack .../17-libxdmcp6_1%3a1.1.2-1.1_amd64.deb ... | |
| Unpacking libxdmcp6:amd64 (1:1.1.2-1.1) ... | |
| Selecting previously unselected package libxcb1:amd64. | |
| Preparing to unpack .../18-libxcb1_1.12-1_amd64.deb ... | |
| Unpacking libxcb1:amd64 (1.12-1) ... | |
| Selecting previously unselected package libx11-data. | |
| Preparing to unpack .../19-libx11-data_2%3a1.6.4-2_all.deb ... | |
| Unpacking libx11-data (2:1.6.4-2) ... | |
| Selecting previously unselected package libx11-6:amd64. | |
| Preparing to unpack .../20-libx11-6_2%3a1.6.4-2_amd64.deb ... | |
| Unpacking libx11-6:amd64 (2:1.6.4-2) ... | |
| Selecting previously unselected package libxext6:amd64. | |
| Preparing to unpack .../21-libxext6_2%3a1.3.3-1_amd64.deb ... | |
| Unpacking libxext6:amd64 (2:1.3.3-1) ... | |
| Selecting previously unselected package libxrender1:amd64. | |
| Preparing to unpack .../22-libxrender1_1%3a0.9.10-1_amd64.deb ... | |
| Unpacking libxrender1:amd64 (1:0.9.10-1) ... | |
| Selecting previously unselected package libxft2:amd64. | |
| Preparing to unpack .../23-libxft2_2.3.2-1_amd64.deb ... | |
| Unpacking libxft2:amd64 (2.3.2-1) ... | |
| Selecting previously unselected package libxss1:amd64. | |
| Preparing to unpack .../24-libxss1_1%3a1.2.2-1_amd64.deb ... | |
| Unpacking libxss1:amd64 (1:1.2.2-1) ... | |
| Selecting previously unselected package libssl1.1:amd64. | |
| Preparing to unpack .../25-libssl1.1_1.1.0c-2_amd64.deb ... | |
| Unpacking libssl1.1:amd64 (1.1.0c-2) ... | |
| Selecting previously unselected package libpython3.5-minimal:amd64. | |
| Preparing to unpack .../26-libpython3.5-minimal_3.5.2-8_amd64.deb ... | |
| Unpacking libpython3.5-minimal:amd64 (3.5.2-8) ... | |
| Selecting previously unselected package python3.5-minimal. | |
| Preparing to unpack .../27-python3.5-minimal_3.5.2-8_amd64.deb ... | |
| Unpacking python3.5-minimal (3.5.2-8) ... | |
| Selecting previously unselected package python3-minimal. | |
| Preparing to unpack .../28-python3-minimal_3.5.1-4_amd64.deb ... | |
| Unpacking python3-minimal (3.5.1-4) ... | |
| Selecting previously unselected package mime-support. | |
| Preparing to unpack .../29-mime-support_3.60_all.deb ... | |
| Unpacking mime-support (3.60) ... | |
| Selecting previously unselected package libmpdec2:amd64. | |
| Preparing to unpack .../30-libmpdec2_2.4.2-1_amd64.deb ... | |
| Unpacking libmpdec2:amd64 (2.4.2-1) ... | |
| Selecting previously unselected package readline-common. | |
| Preparing to unpack .../31-readline-common_7.0-1_all.deb ... | |
| Unpacking readline-common (7.0-1) ... | |
| Selecting previously unselected package libreadline7:amd64. | |
| Preparing to unpack .../32-libreadline7_7.0-1_amd64.deb ... | |
| Unpacking libreadline7:amd64 (7.0-1) ... | |
| Selecting previously unselected package libpython3.5-stdlib:amd64. | |
| Preparing to unpack .../33-libpython3.5-stdlib_3.5.2-8_amd64.deb ... | |
| Unpacking libpython3.5-stdlib:amd64 (3.5.2-8) ... | |
| Selecting previously unselected package python3.5. | |
| Preparing to unpack .../34-python3.5_3.5.2-8_amd64.deb ... | |
| Unpacking python3.5 (3.5.2-8) ... | |
| Selecting previously unselected package libpython3-stdlib:amd64. | |
| Preparing to unpack .../35-libpython3-stdlib_3.5.1-4_amd64.deb ... | |
| Unpacking libpython3-stdlib:amd64 (3.5.1-4) ... | |
| Selecting previously unselected package dh-python. | |
| Preparing to unpack .../36-dh-python_2.20160818_all.deb ... | |
| Unpacking dh-python (2.20160818) ... | |
| Setting up libssl1.1:amd64 (1.1.0c-2) ... | |
| Setting up libpython3.5-minimal:amd64 (3.5.2-8) ... | |
| Setting up libexpat1:amd64 (2.2.0-1) ... | |
| Setting up python3.5-minimal (3.5.2-8) ... | |
| Setting up python3-minimal (3.5.1-4) ... | |
| Selecting previously unselected package python3. | |
| (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13751 files and directories currently installed.) | |
| Preparing to unpack .../000-python3_3.5.1-4_amd64.deb ... | |
| Unpacking python3 (3.5.1-4) ... | |
| Selecting previously unselected package sgml-base. | |
| Preparing to unpack .../001-sgml-base_1.29_all.deb ... | |
| Unpacking sgml-base (1.29) ... | |
| Selecting previously unselected package libjbig0:amd64. | |
| Preparing to unpack .../002-libjbig0_2.1-3.1_amd64.deb ... | |
| Unpacking libjbig0:amd64 (2.1-3.1) ... | |
| Selecting previously unselected package libmagic-mgc. | |
| Preparing to unpack .../003-libmagic-mgc_1%3a5.29-1_amd64.deb ... | |
| Unpacking libmagic-mgc (1:5.29-1) ... | |
| Selecting previously unselected package libmagic1:amd64. | |
| Preparing to unpack .../004-libmagic1_1%3a5.29-1_amd64.deb ... | |
| Unpacking libmagic1:amd64 (1:5.29-1) ... | |
| Selecting previously unselected package file. | |
| Preparing to unpack .../005-file_1%3a5.29-1_amd64.deb ... | |
| Unpacking file (1:5.29-1) ... | |
| Selecting previously unselected package gettext-base. | |
| Preparing to unpack .../006-gettext-base_0.19.8.1-1_amd64.deb ... | |
| Unpacking gettext-base (0.19.8.1-1) ... | |
| Selecting previously unselected package libnettle6:amd64. | |
| Preparing to unpack .../007-libnettle6_3.3-1_amd64.deb ... | |
| Unpacking libnettle6:amd64 (3.3-1) ... | |
| Selecting previously unselected package libhogweed4:amd64. | |
| Preparing to unpack .../008-libhogweed4_3.3-1_amd64.deb ... | |
| Unpacking libhogweed4:amd64 (3.3-1) ... | |
| Selecting previously unselected package libidn11:amd64. | |
| Preparing to unpack .../009-libidn11_1.33-1_amd64.deb ... | |
| Unpacking libidn11:amd64 (1.33-1) ... | |
| Selecting previously unselected package libffi6:amd64. | |
| Preparing to unpack .../010-libffi6_3.2.1-6_amd64.deb ... | |
| Unpacking libffi6:amd64 (3.2.1-6) ... | |
| Selecting previously unselected package libp11-kit0:amd64. | |
| Preparing to unpack .../011-libp11-kit0_0.23.2-5_amd64.deb ... | |
| Unpacking libp11-kit0:amd64 (0.23.2-5) ... | |
| Selecting previously unselected package libtasn1-6:amd64. | |
| Preparing to unpack .../012-libtasn1-6_4.9-4_amd64.deb ... | |
| Unpacking libtasn1-6:amd64 (4.9-4) ... | |
| Selecting previously unselected package libgnutls30:amd64. | |
| Preparing to unpack .../013-libgnutls30_3.5.7-2_amd64.deb ... | |
| Unpacking libgnutls30:amd64 (3.5.7-2) ... | |
| Selecting previously unselected package libkeyutils1:amd64. | |
| Preparing to unpack .../014-libkeyutils1_1.5.9-9_amd64.deb ... | |
| Unpacking libkeyutils1:amd64 (1.5.9-9) ... | |
| Selecting previously unselected package libkrb5support0:amd64. | |
| Preparing to unpack .../015-libkrb5support0_1.15-1_amd64.deb ... | |
| Unpacking libkrb5support0:amd64 (1.15-1) ... | |
| Selecting previously unselected package libk5crypto3:amd64. | |
| Preparing to unpack .../016-libk5crypto3_1.15-1_amd64.deb ... | |
| Unpacking libk5crypto3:amd64 (1.15-1) ... | |
| Selecting previously unselected package libkrb5-3:amd64. | |
| Preparing to unpack .../017-libkrb5-3_1.15-1_amd64.deb ... | |
| Unpacking libkrb5-3:amd64 (1.15-1) ... | |
| Selecting previously unselected package libgssapi-krb5-2:amd64. | |
| Preparing to unpack .../018-libgssapi-krb5-2_1.15-1_amd64.deb ... | |
| Unpacking libgssapi-krb5-2:amd64 (1.15-1) ... | |
| Selecting previously unselected package libsasl2-modules-db:amd64. | |
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| update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults | |
| invoke-rc.d: could not determine current runlevel | |
| Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. | |
| Setting up xdg-utils (1.1.1-1) ... | |
| Setting up ca-certificates (20161130) ... | |
| Updating certificates in /etc/ssl/certs... | |
| 173 added, 0 removed; done. | |
| Setting up libx11-data (2:1.6.4-2) ... | |
| Setting up libxau6:amd64 (1:1.0.8-1) ... | |
| Setting up autopoint (0.19.8.1-1) ... | |
| Setting up libidn11:amd64 (1.33-1) ... | |
| Setting up libmpdec2:amd64 (2.4.2-1) ... | |
| Setting up libfile-stripnondeterminism-perl (0.028-1) ... | |
| Setting up libpaper1:amd64 (1.1.24+nmu5) ... | |
| Creating config file /etc/papersize with new version | |
| Setting up libpaper-utils (1.1.24+nmu5) ... | |
| Setting up fontconfig-config (2.11.0-6.7) ... | |
| Setting up liblapack3 (3.6.1-2) ... | |
| update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode | |
| Setting up libglib2.0-0:amd64 (2.50.2-2) ... | |
| No schema files found: doing nothing. | |
| Setting up libpython3.5-stdlib:amd64 (3.5.2-8) ... | |
| Setting up libharfbuzz0b:amd64 (1.2.7-1+b1) ... | |
| Setting up autoconf (2.69-10) ... | |
| Setting up libthai0:amd64 (0.1.25-2) ... | |
| Setting up file (1:5.29-1) ... | |
| Setting up libkrb5support0:amd64 (1.15-1) ... | |
| Setting up libcroco3:amd64 (0.6.11-2) ... | |
| Setting up libp11-kit0:amd64 (0.23.2-5) ... | |
| Setting up automake (1:1.15-5) ... | |
| update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode | |
| Setting up libice6:amd64 (2:1.0.9-1+b1) ... | |
| Setting up man-db (2.7.5-2) ... | |
| Building database of manual pages ... | |
| Setting up libxcb1:amd64 (1.12-1) ... | |
| Setting up libtool (2.4.6-2) ... | |
| Setting up python3.5 (3.5.2-8) ... | |
| Setting up libpython3-stdlib:amd64 (3.5.1-4) ... | |
| Setting up libfontconfig1:amd64 (2.11.0-6.7) ... | |
| Setting up libsm6:amd64 (2:1.2.2-1+b1) ... | |
| Setting up libk5crypto3:amd64 (1.15-1) ... | |
| Setting up libxcb-render0:amd64 (1.12-1) ... | |
| Setting up gettext (0.19.8.1-1) ... | |
| Setting up libgnutls30:amd64 (3.5.7-2) ... | |
| Setting up libx11-6:amd64 (2:1.6.4-2) ... | |
| Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-1) ... | |
| Setting up intltool-debian (0.35.0+20060710.4) ... | |
| Setting up libldap-2.4-2:amd64 (2.4.44+dfsg-2) ... | |
| Setting up libxcb-shm0:amd64 (1.12-1) ... | |
| Setting up libxt6:amd64 (1:1.1.5-1) ... | |
| Setting up libxrender1:amd64 (1:0.9.10-1) ... | |
| Setting up libkrb5-3:amd64 (1.15-1) ... | |
| Setting up libxft2:amd64 (2.3.2-1) ... | |
| Setting up fontconfig (2.11.0-6.7) ... | |
| Regenerating fonts cache... done. | |
| Setting up libxext6:amd64 (2:1.3.3-1) ... | |
| Setting up po-debconf (1.0.20) ... | |
| Setting up libxss1:amd64 (1:1.2.2-1) ... | |
| Setting up libgssapi-krb5-2:amd64 (1.15-1) ... | |
| Setting up libpango-1.0-0:amd64 (1.40.3-3) ... | |
| Setting up libcairo2:amd64 (1.14.6-1.1) ... | |
| Setting up libcurl3:amd64 (7.51.0-1) ... | |
| Setting up libtk8.6:amd64 (8.6.6-1) ... | |
| Setting up libpangoft2-1.0-0:amd64 (1.40.3-3) ... | |
| Setting up libpangocairo-1.0-0:amd64 (1.40.3-3) ... | |
| Setting up r-base-core (3.3.2-1) ... | |
| Creating config file /etc/R/Renviron with new version | |
| Processing triggers for sgml-base (1.29) ... | |
| Setting up docutils-common (0.12+dfsg-2) ... | |
| Processing triggers for sgml-base (1.29) ... | |
| Setting up dh-autoreconf (12) ... | |
| Setting up python3 (3.5.1-4) ... | |
| Setting up python3-numpy (1:1.11.2-1) ... | |
| Setting up python3-alabaster (0.7.8-1) ... | |
| Setting up python3-six (1.10.0-3) ... | |
| Setting up python3-rpy2 (2.8.4-1) ... | |
| Setting up python3-appdirs (1.4.0-2) ... | |
| Setting up python3-pkg-resources (28.7.1-1) ... | |
| Setting up python3-markupsafe (0.23-3) ... | |
| Setting up dh-strip-nondeterminism (0.028-1) ... | |
| Setting up python3-wrapt (1.9.0-2) ... | |
| Setting up python3-nose (1.3.7-2) ... | |
| Setting up python3-jinja2 (2.8-1) ... | |
| Setting up python3-setuptools (28.7.1-1) ... | |
| Setting up dh-python (2.20160818) ... | |
| Setting up python3-decorator (4.0.6-1) ... | |
| Setting up python3-tz (2016.7-0.2) ... | |
| Setting up python3-sphinx-bootstrap-theme (0.4.8-1) ... | |
| Setting up python3-pygments (2.1.3+dfsg-1) ... | |
| Setting up python3-yaml (3.12-1) ... | |
| Setting up debhelper (10.2.2) ... | |
| Setting up python3-roman (2.0.0-2) ... | |
| Setting up python3-imagesize (0.7.1-1) ... | |
| Setting up python3-pytools (2016.2.6-1) ... | |
| Setting up python3-babel (2.3.4+dfsg.1-2) ... | |
| update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode | |
| Setting up python3-docutils (0.12+dfsg-2) ... | |
| update-alternatives: using /usr/share/docutils/scripts/python3/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode | |
| update-alternatives: using /usr/share/docutils/scripts/python3/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode | |
| update-alternatives: using /usr/share/docutils/scripts/python3/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode | |
| update-alternatives: using /usr/share/docutils/scripts/python3/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode | |
| update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode | |
| update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode | |
| update-alternatives: using /usr/share/docutils/scripts/python3/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode | |
| update-alternatives: using /usr/share/docutils/scripts/python3/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode | |
| update-alternatives: using /usr/share/docutils/scripts/python3/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode | |
| update-alternatives: using /usr/share/docutils/scripts/python3/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode | |
| update-alternatives: using /usr/share/docutils/scripts/python3/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode | |
| Setting up python3-sphinx (1.4.9-1) ... | |
| Processing triggers for libc-bin (2.24-8) ... | |
| Processing triggers for ca-certificates (20161130) ... | |
| Updating certificates in /etc/ssl/certs... | |
| 0 added, 0 removed; done. | |
| Running hooks in /etc/ca-certificates/update.d... | |
| done. | |
| Reading package lists... | |
| Building dependency tree... | |
| Reading state information... | |
| Reading extended state information... | |
| Initializing package states... | |
| Writing extended state information... | |
| Building tag database... | |
| -> Finished parsing the build-deps | |
| Reading package lists... | |
| Building dependency tree... | |
| Reading state information... | |
| The following additional packages will be installed: | |
| libfakeroot | |
| The following NEW packages will be installed: | |
| fakeroot libfakeroot | |
| 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. | |
| Need to get 131 kB of archives. | |
| After this operation, 374 kB of additional disk space will be used. | |
| Get:1 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libfakeroot amd64 1.21-3 [45.7 kB] | |
| Get:2 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 fakeroot amd64 1.21-3 [85.7 kB] | |
| debconf: delaying package configuration, since apt-utils is not installed | |
| Fetched 131 kB in 0s (0 B/s) | |
| Selecting previously unselected package libfakeroot:amd64. | |
| (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20024 files and directories currently installed.) | |
| Preparing to unpack .../0-libfakeroot_1.21-3_amd64.deb ... | |
| Unpacking libfakeroot:amd64 (1.21-3) ... | |
| Selecting previously unselected package fakeroot. | |
| Preparing to unpack .../1-fakeroot_1.21-3_amd64.deb ... | |
| Unpacking fakeroot (1.21-3) ... | |
| Processing triggers for libc-bin (2.24-8) ... | |
| Setting up libfakeroot:amd64 (1.21-3) ... | |
| Processing triggers for man-db (2.7.5-2) ... | |
| Setting up fakeroot (1.21-3) ... | |
| update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode | |
| Processing triggers for libc-bin (2.24-8) ... | |
| [0mI: Building the package[0m | |
| [0mI: Running cd /build/*/ && env PATH="/usr/lib/ccache:/usr/sbin:/usr/bin:/sbin:/bin" HOME="/nonexistent" dpkg-buildpackage -us -uc -rfakeroot[0m | |
| dpkg-buildpackage: info: source package snakemake | |
| dpkg-buildpackage: info: source version 3.9.0+dfsg-1 | |
| dpkg-buildpackage: info: source distribution UNRELEASED | |
| dpkg-buildpackage: info: source changed by Kevin Murray <kdmfoss@gmail.com> | |
| dpkg-source --before-build snakemake-3.9.0+dfsg | |
| dpkg-buildpackage: info: host architecture amd64 | |
| fakeroot debian/rules clean | |
| dh clean --with python3,sphinxdoc --buildsystem=pybuild --parallel | |
| dh_testdir -O--buildsystem=pybuild -O--parallel | |
| dh_auto_clean -O--buildsystem=pybuild -O--parallel | |
| I: pybuild base:184: python3.5 setup.py clean | |
| running clean | |
| removing '/build/snakemake-3.9.0+dfsg/.pybuild/pythonX.Y_3.5/build' (and everything under it) | |
| 'build/bdist.linux-x86_64' does not exist -- can't clean it | |
| 'build/scripts-3.5' does not exist -- can't clean it | |
| dh_clean -O--buildsystem=pybuild -O--parallel | |
| dpkg-source -b snakemake-3.9.0+dfsg | |
| dpkg-source: info: using source format '3.0 (quilt)' | |
| dpkg-source: info: building snakemake using existing ./snakemake_3.9.0+dfsg.orig.tar.gz | |
| dpkg-source: info: building snakemake in snakemake_3.9.0+dfsg-1.debian.tar.xz | |
| dpkg-source: info: building snakemake in snakemake_3.9.0+dfsg-1.dsc | |
| debian/rules build | |
| dh build --with python3,sphinxdoc --buildsystem=pybuild --parallel | |
| dh_testdir -O--buildsystem=pybuild -O--parallel | |
| dh_update_autotools_config -O--buildsystem=pybuild -O--parallel | |
| dh_auto_configure -O--buildsystem=pybuild -O--parallel | |
| I: pybuild base:184: python3.5 setup.py config | |
| running config | |
| debian/rules override_dh_auto_build | |
| make[1]: Entering directory '/build/snakemake-3.9.0+dfsg' | |
| dh_auto_build | |
| I: pybuild base:184: /usr/bin/python3 setup.py build | |
| running build | |
| running build_py | |
| creating /build/snakemake-3.9.0+dfsg/.pybuild/pythonX.Y_3.5/build/snakemake | |
| copying snakemake/wrapper.py -> /build/snakemake-3.9.0+dfsg/.pybuild/pythonX.Y_3.5/build/snakemake | |
| copying snakemake/workflow.py -> /build/snakemake-3.9.0+dfsg/.pybuild/pythonX.Y_3.5/build/snakemake | |
| copying snakemake/version.py -> /build/snakemake-3.9.0+dfsg/.pybuild/pythonX.Y_3.5/build/snakemake | |
| copying snakemake/utils.py -> /build/snakemake-3.9.0+dfsg/.pybuild/pythonX.Y_3.5/build/snakemake | |
| copying snakemake/stats.py -> /build/snakemake-3.9.0+dfsg/.pybuild/pythonX.Y_3.5/build/snakemake | |
| copying snakemake/shell.py -> /build/snakemake-3.9.0+dfsg/.pybuild/pythonX.Y_3.5/build/snakemake | |
| copying snakemake/script.py -> /build/snakemake-3.9.0+dfsg/.pybuild/pythonX.Y_3.5/build/snakemake | |
| copying snakemake/scheduler.py -> /build/snakemake-3.9.0+dfsg/.pybuild/pythonX.Y_3.5/build/snakemake | |
| copying snakemake/rules.py -> /build/snakemake-3.9.0+dfsg/.pybuild/pythonX.Y_3.5/build/snakemake | |
| copying snakemake/report.py -> /build/snakemake-3.9.0+dfsg/.pybuild/pythonX.Y_3.5/build/snakemake | |
| copying snakemake/persistence.py -> /build/snakemake-3.9.0+dfsg/.pybuild/pythonX.Y_3.5/build/snakemake | |
| copying snakemake/parser.py -> /build/snakemake-3.9.0+dfsg/.pybuild/pythonX.Y_3.5/build/snakemake | |
| copying snakemake/output_index.py -> /build/snakemake-3.9.0+dfsg/.pybuild/pythonX.Y_3.5/build/snakemake | |
| copying snakemake/logging.py -> /build/snakemake-3.9.0+dfsg/.pybuild/pythonX.Y_3.5/build/snakemake | |
| copying snakemake/jobs.py -> /build/snakemake-3.9.0+dfsg/.pybuild/pythonX.Y_3.5/build/snakemake | |
| copying snakemake/io.py -> /build/snakemake-3.9.0+dfsg/.pybuild/pythonX.Y_3.5/build/snakemake | |
| copying snakemake/gui.py -> /build/snakemake-3.9.0+dfsg/.pybuild/pythonX.Y_3.5/build/snakemake | |
| copying snakemake/executors.py -> /build/snakemake-3.9.0+dfsg/.pybuild/pythonX.Y_3.5/build/snakemake | |
| copying snakemake/exceptions.py -> /build/snakemake-3.9.0+dfsg/.pybuild/pythonX.Y_3.5/build/snakemake | |
| copying snakemake/decorators.py -> /build/snakemake-3.9.0+dfsg/.pybuild/pythonX.Y_3.5/build/snakemake | |
| copying snakemake/dag.py -> /build/snakemake-3.9.0+dfsg/.pybuild/pythonX.Y_3.5/build/snakemake | |
| copying snakemake/conda.py -> /build/snakemake-3.9.0+dfsg/.pybuild/pythonX.Y_3.5/build/snakemake | |
| copying snakemake/common.py -> /build/snakemake-3.9.0+dfsg/.pybuild/pythonX.Y_3.5/build/snakemake | |
| copying snakemake/__init__.py -> /build/snakemake-3.9.0+dfsg/.pybuild/pythonX.Y_3.5/build/snakemake | |
| creating /build/snakemake-3.9.0+dfsg/.pybuild/pythonX.Y_3.5/build/snakemake/remote | |
| copying snakemake/remote/dropbox.py -> /build/snakemake-3.9.0+dfsg/.pybuild/pythonX.Y_3.5/build/snakemake/remote | |
| copying snakemake/remote/__init__.py -> /build/snakemake-3.9.0+dfsg/.pybuild/pythonX.Y_3.5/build/snakemake/remote | |
| copying snakemake/remote/SFTP.py -> /build/snakemake-3.9.0+dfsg/.pybuild/pythonX.Y_3.5/build/snakemake/remote | |
| copying snakemake/remote/S3.py -> /build/snakemake-3.9.0+dfsg/.pybuild/pythonX.Y_3.5/build/snakemake/remote | |
| copying snakemake/remote/HTTP.py -> /build/snakemake-3.9.0+dfsg/.pybuild/pythonX.Y_3.5/build/snakemake/remote | |
| copying snakemake/remote/GS.py -> /build/snakemake-3.9.0+dfsg/.pybuild/pythonX.Y_3.5/build/snakemake/remote | |
| copying snakemake/remote/FTP.py -> /build/snakemake-3.9.0+dfsg/.pybuild/pythonX.Y_3.5/build/snakemake/remote | |
| copying snakemake/report.css -> /build/snakemake-3.9.0+dfsg/.pybuild/pythonX.Y_3.5/build/snakemake | |
| copying snakemake/jobscript.sh -> /build/snakemake-3.9.0+dfsg/.pybuild/pythonX.Y_3.5/build/snakemake | |
| copying snakemake/gui.html -> /build/snakemake-3.9.0+dfsg/.pybuild/pythonX.Y_3.5/build/snakemake | |
| python3 setup.py build_sphinx | |
| running build_sphinx | |
| creating /build/snakemake-3.9.0+dfsg/build | |
| creating /build/snakemake-3.9.0+dfsg/build/sphinx | |
| creating /build/snakemake-3.9.0+dfsg/build/sphinx/doctrees | |
| creating /build/snakemake-3.9.0+dfsg/build/sphinx/html | |
| Running Sphinx v1.4.9 | |
| loading pickled environment... not yet created | |
| building [mo]: targets for 0 po files that are out of date | |
| building [html]: targets for 3 source files that are out of date | |
| updating environment: 3 added, 0 changed, 0 removed | |
| reading sources... [ 33%] api | |
| reading sources... [ 66%] index | |
| reading sources... [100%] utils | |
| looking for now-outdated files... none found | |
| pickling environment... done | |
| checking consistency... done | |
| preparing documents... done | |
| writing output... [ 33%] api | |
| writing output... [ 66%] index | |
| writing output... [100%] utils | |
| generating indices... genindex py-modindex | |
| highlighting module code... [ 50%] snakemake | |
| highlighting module code... [100%] snakemake.utils | |
| writing additional pages... search | |
| copying static files... WARNING: html_static_path entry '/build/snakemake-3.9.0+dfsg/docs/_static' does not exist | |
| done | |
| copying extra files... done | |
| dumping search index in English (code: en) ... done | |
| dumping object inventory... done | |
| build succeeded, 1 warning. | |
| make[1]: Leaving directory '/build/snakemake-3.9.0+dfsg' | |
| dh_auto_test -O--buildsystem=pybuild -O--parallel | |
| I: pybuild pybuild:212: cp -r /build/snakemake-3.9.0+dfsg/bin /build/snakemake-3.9.0+dfsg/tests /build/snakemake-3.9.0+dfsg/.pybuild/pythonX.Y_3.5/build | |
| I: pybuild base:184: cd /build/snakemake-3.9.0+dfsg/.pybuild/pythonX.Y_3.5/build; python3.5 -m nose tests | |
| ..Provided cores: 3 | |
| Rules claiming more threads will be scaled down. | |
| Job counts: | |
| count jobs | |
| 1 rule1 | |
| 1 rule2 | |
| 2 | |
| Copying test.in to test.inter | |
| /bin/bash: /build/snakemake-3.9.0+dfsg/.pybuild/pythonX.Y_3.5/.bashrc: No such file or directory | |
| 1 of 2 steps (50%) done | |
| rule rule1: | |
| input: test.inter | |
| output: dir/test.out | |
| log: log/logfile.log | |
| threads: 3 | |
| /bin/bash: /build/snakemake-3.9.0+dfsg/.pybuild/pythonX.Y_3.5/.bashrc: No such file or directory | |
| abc | |
| 3.3 | |
| 2 of 2 steps (100%) done | |
| .Provided cores: 3 | |
| Rules claiming more threads will be scaled down. | |
| Job counts: | |
| count jobs | |
| 1 all | |
| 1 rule1 | |
| 1 rule2 | |
| 3 | |
| rule rule1: | |
| input: test.in | |
| output: test.inter | |
| log: logs/test.log | |
| wildcards: name=test | |
| /bin/bash: /build/snakemake-3.9.0+dfsg/.pybuild/pythonX.Y_3.5/.bashrc: No such file or directory | |
| 1 of 3 steps (33%) done | |
| rule rule2: | |
| input: test.inter | |
| output: test.out | |
| wildcards: name=test | |
| /bin/bash: /build/snakemake-3.9.0+dfsg/.pybuild/pythonX.Y_3.5/.bashrc: No such file or directory | |
| 2 of 3 steps (67%) done | |
| localrule all: | |
| input: test.out | |
| 3 of 3 steps (100%) done | |
| .Provided cores: 3 | |
| Rules claiming more threads will be scaled down. | |
| Job counts: | |
| count jobs | |
| 1 rule1 | |
| 1 | |
| Copying test.in to test.out | |
| /bin/bash: /build/snakemake-3.9.0+dfsg/.pybuild/pythonX.Y_3.5/.bashrc: No such file or directory | |
| 1 of 1 steps (100%) done | |
| .Provided cores: 3 | |
| Rules claiming more threads will be scaled down. | |
| Job counts: | |
| count jobs | |
| 1 rule2 | |
| 1 | |
| Copying test.in to test.out | |
| /bin/bash: /build/snakemake-3.9.0+dfsg/.pybuild/pythonX.Y_3.5/.bashrc: No such file or directory | |
| 1 of 1 steps (100%) done | |
| .Provided cores: 3 | |
| Rules claiming more threads will be scaled down. | |
| Ignored resources: io, io, io, gpu, gpu | |
| Job counts: | |
| count jobs | |
| 1 all | |
| 1 compute1 | |
| 3 compute2 | |
| 1 gather | |
| 1 other | |
| 7 | |
| rule other: | |
| output: other.txt | |
| priority: 50 | |
| resources: gpu=1 | |
| rule compute1: | |
| input: test.in | |
| output: test.1.inter, test.2.inter, test.3.inter | |
| wildcards: name=test | |
| resources: gpu=1 | |
| 1 of 7 steps (14%) done | |
| test.1.inter test.2.inter test.3.inter | |
| 2 of 7 steps (29%) done | |
| rule compute2: | |
| input: test.1.inter, other.txt | |
| output: test.1.inter2 | |
| wildcards: chromosome=1, name=test | |
| threads: 2 | |
| resources: io=1 | |
| 3 of 7 steps (43%) done | |
| rule compute2: | |
| input: test.3.inter, other.txt | |
| output: test.3.inter2 | |
| wildcards: chromosome=3, name=test | |
| threads: 2 | |
| resources: io=1 | |
| 4 of 7 steps (57%) done | |
| rule compute2: | |
| input: test.2.inter, other.txt | |
| output: test.2.inter2 | |
| wildcards: chromosome=2, name=test | |
| threads: 2 | |
| resources: io=1 | |
| 5 of 7 steps (71%) done | |
| rule gather: | |
| input: test.1.inter2, test.2.inter2, test.3.inter2 | |
| output: test.predictions | |
| wildcards: name=test | |
| 6 of 7 steps (86%) done | |
| localrule all: | |
| input: test.predictions | |
| 7 of 7 steps (100%) done | |
| .Provided cores: 3 | |
| Rules claiming more threads will be scaled down. | |
| Job counts: | |
| count jobs | |
| 1 wildcards | |
| 1 | |
| Creating file test.bla.out, xyz=bla | |
| 1 of 1 steps (100%) done | |
| .Provided cores: 3 | |
| Rules claiming more threads will be scaled down. | |
| Job counts: | |
| count jobs | |
| 1 rule1 | |
| 1 rule2 | |
| 2 | |
| rule rule2: | |
| input: test.in | |
| output: test2.out | |
| rule rule1: | |
| input: test.in | |
| output: test.out | |
| 1 of 2 steps (50%) done | |
| 2 of 2 steps (100%) done | |
| .Provided cores: 3 | |
| Rules claiming more threads will be scaled down. | |
| Job counts: | |
| count jobs | |
| 2 rule1 | |
| 2 rule2 | |
| 4 | |
| rule rule1: | |
| input: test2.in | |
| output: test2.inter | |
| wildcards: file=test2 | |
| rule rule1: | |
| input: test.in | |
| output: test.inter | |
| wildcards: file=test | |
| 1 of 4 steps (25%) done | |
| rule rule2: | |
| input: test.inter | |
| output: test.out | |
| wildcards: file=test | |
| 2 of 4 steps (50%) done | |
| rule rule2: | |
| input: test2.inter | |
| output: test2.out | |
| wildcards: file=test2 | |
| 3 of 4 steps (75%) done | |
| 4 of 4 steps (100%) done | |
| .Provided cores: 3 | |
| Rules claiming more threads will be scaled down. | |
| Job counts: | |
| count jobs | |
| 1 rule1 | |
| 1 rule2 | |
| 2 | |
| rule rule1: | |
| input: test.in | |
| output: test.inter | |
| Error in job rule1 while creating output file test.inter. | |
| RuleException: | |
| CalledProcessError in line 19 of /build/snakemake-3.9.0+dfsg/.pybuild/pythonX.Y_3.5/build/tests/test09/Snakefile: | |
| Command 'false && cp test.in test.inter' returned non-zero exit status 1 | |
| File "/build/snakemake-3.9.0+dfsg/.pybuild/pythonX.Y_3.5/build/tests/test09/Snakefile", line 19, in __rule_rule1 | |
| File "/usr/lib/python3.5/concurrent/futures/thread.py", line 55, in run | |
| Will exit after finishing currently running jobs. | |
| Exiting because a job execution failed. Look above for error message | |
| .Provided cores: 3 | |
| Rules claiming more threads will be scaled down. | |
| Job counts: | |
| count jobs | |
| 1 rule1 | |
| 1 | |
| rule rule1: | |
| input: test.in | |
| output: test.out | |
| 1 of 1 steps (100%) done | |
| .Provided cores: 3 | |
| Rules claiming more threads will be scaled down. | |
| Job counts: | |
| count jobs | |
| 1 1 | |
| 1 2 | |
| 2 | |
| rule 1: | |
| input: test.in | |
| output: test.inter | |
| 1 of 2 steps (50%) done | |
| rule 2: | |
| input: test.inter | |
| output: test.out | |
| 2 of 2 steps (100%) done | |
| .Provided cores: 3 | |
| Rules claiming more threads will be scaled down. | |
| Job counts: | |
| count jobs | |
| 1 rule1 | |
| 1 rule2 | |
| 2 | |
| rule rule2: | |
| input: test.in | |
| output: test.inter | |
| 1 of 2 steps (50%) done | |
| rule rule1: | |
| input: test.inter | |
| output: test.out | |
| Removing temporary output file test.inter. | |
| 2 of 2 steps (100%) done | |
| .Provided cores: 3 | |
| Rules claiming more threads will be scaled down. | |
| Job counts: | |
| count jobs | |
| 1 all | |
| 1 postprocess | |
| 1 run_algo1 | |
| 3 | |
| rule run_algo1: | |
| input: test.in | |
| output: test.algo1-p7.out | |
| wildcards: dataset=test, param=7 | |
| 1 of 3 steps (33%) done | |
| rule postprocess: | |
| input: test.algo1-p7.out | |
| output: test.algo1-p7-improved.out | |
| wildcards: dataset=test, algorithm=algo1-p7 | |
| 2 of 3 steps (67%) done | |
| localrule all: | |
| input: test.algo1-p7-improved.out | |
| 3 of 3 steps (100%) done | |
| .Provided cluster nodes: 1 | |
| Job counts: | |
| count jobs | |
| 1 all | |
| 1 compute1 | |
| 5 compute2 | |
| 1 gather | |
| 8 | |
| rule compute1: | |
| input: test.in | |
| output: test.1.inter, test.2.inter, test.3.inter, test.4.inter, test.5.inter | |
| wildcards: name=test | |
| 1 of 8 steps (12%) done | |
| rule compute2: | |
| input: test.2.inter | |
| output: test.2.inter2 | |
| wildcards: chromosome=2, name=test | |
| 2 of 8 steps (25%) done | |
| rule compute2: | |
| input: test.3.inter | |
| output: test.3.inter2 | |
| wildcards: chromosome=3, name=test | |
| 3 of 8 steps (38%) done | |
| rule compute2: | |
| input: test.1.inter | |
| output: test.1.inter2 | |
| wildcards: chromosome=1, name=test | |
| 4 of 8 steps (50%) done | |
| rule compute2: | |
| input: test.5.inter | |
| output: test.5.inter2 | |
| wildcards: chromosome=5, name=test | |
| 5 of 8 steps (62%) done | |
| rule compute2: | |
| input: test.4.inter | |
| output: test.4.inter2 | |
| wildcards: chromosome=4, name=test | |
| 6 of 8 steps (75%) done | |
| rule gather: | |
| input: test.1.inter2, test.2.inter2, test.3.inter2, test.4.inter2, test.5.inter2 | |
| output: test.predictions | |
| wildcards: name=test | |
| 7 of 8 steps (88%) done | |
| localrule all: | |
| input: test.predictions, test.2.inter2 | |
| 8 of 8 steps (100%) done | |
| .Provided cores: 3 | |
| Rules claiming more threads will be scaled down. | |
| Job counts: | |
| count jobs | |
| 1 a | |
| 1 | |
| rule a: | |
| input: test.in | |
| output: test.out | |
| 1 of 1 steps (100%) done | |
| .Provided cores: 3 | |
| Rules claiming more threads will be scaled down. | |
| Job counts: | |
| count jobs | |
| 1 b | |
| 1 c | |
| 2 | |
| rule b: | |
| input: B | |
| output: C | |
| 1 of 2 steps (50%) done | |
| rule c: | |
| input: C | |
| output: D | |
| 2 of 2 steps (100%) done | |
| .Provided cores: 3 | |
| Rules claiming more threads will be scaled down. | |
| Job counts: | |
| count jobs | |
| 1 report | |
| 1 | |
| rule report: | |
| input: fig.png, fig2.png | |
| output: report.html | |
| 1 of 1 steps (100%) done | |
| .Provided cores: 3 | |
| Rules claiming more threads will be scaled down. | |
| Job counts: | |
| count jobs | |
| 1 4 | |
| 1 5 | |
| 1 all | |
| 1 dynoutput | |
| 1 inter | |
| 5 | |
| rule dynoutput: | |
| input: test.xy.in | |
| output: test.{*}.{*}.inter (dynamic) | |
| Subsequent jobs will be added dynamically depending on the output of this rule | |
| Dynamically updating jobs | |
| 1 of 11 steps (9%) done | |
| rule 4: | |
| input: test.02.xy.inter | |
| output: test.02.xy.txt | |
| wildcards: n=02, bla=xy | |
| rule 4: | |
| input: test.01.xy.inter | |
| output: test.01.xy.txt | |
| wildcards: n=01, bla=xy | |
| rule 4: | |
| input: test.00.xy.inter | |
| output: test.00.xy.txt | |
| wildcards: n=00, bla=xy | |
| 2 of 11 steps (18%) done | |
| 3 of 11 steps (27%) done | |
| rule inter: | |
| input: test.00.xy.inter | |
| output: test.00.xy.out | |
| wildcards: n=00, bla=xy | |
| rule 5: | |
| input: test.01.xy.txt | |
| output: test.01.xy.csv | |
| wildcards: n=01, bla=xy | |
| 4 of 11 steps (36%) done | |
| rule 5: | |
| input: test.00.xy.txt | |
| output: test.00.xy.csv | |
| wildcards: n=00, bla=xy | |
| 5 of 11 steps (45%) done | |
| rule inter: | |
| input: test.01.xy.inter | |
| output: test.01.xy.out | |
| wildcards: n=01, bla=xy | |
| 6 of 11 steps (55%) done | |
| rule inter: | |
| input: test.02.xy.inter | |
| output: test.02.xy.out | |
| wildcards: n=02, bla=xy | |
| 7 of 11 steps (64%) done | |
| rule 5: | |
| input: test.02.xy.txt | |
| output: test.02.xy.csv | |
| wildcards: n=02, bla=xy | |
| 8 of 11 steps (73%) done | |
| 9 of 11 steps (82%) done | |
| 10 of 11 steps (91%) done | |
| rule all: | |
| input: test.00.xy.out, test.02.xy.out, test.01.xy.out, test.00.xy.csv, test.02.xy.csv, test.01.xy.csv | |
| test.00.xy.csv test.02.xy.csv test.01.xy.csv | |
| 11 of 11 steps (100%) done | |
| .Provided cores: 3 | |
| Rules claiming more threads will be scaled down. | |
| Job counts: | |
| count jobs | |
| 1 1 | |
| 1 2 | |
| 2 | |
| rule 2: | |
| output: somedir/test.out | |
| wildcards: dir=somedir | |
| 1 of 2 steps (50%) done | |
| localrule 1: | |
| input: somedir/test.out | |
| 2 of 2 steps (100%) done | |
| .Provided cores: 3 | |
| Rules claiming more threads will be scaled down. | |
| Job counts: | |
| count jobs | |
| 1 1 | |
| 1 2 | |
| 2 | |
| rule 2: | |
| input: test_test.in | |
| output: test_test.out | |
| wildcards: name=test | |
| 1 of 2 steps (50%) done | |
| localrule 1: | |
| input: test_test.out | |
| 2 of 2 steps (100%) done | |
| .Provided cores: 3 | |
| Rules claiming more threads will be scaled down. | |
| Job counts: | |
| count jobs | |
| 1 1 | |
| 1 2 | |
| 1 3 | |
| 1 4 | |
| 4 | |
| rule 3: | |
| output: test.1.out | |
| rule 2: | |
| output: test.0.out | |
| rule 1: | |
| output: test.out | |
| 1 of 4 steps (25%) done | |
| rule 4: | |
| output: test.2.out | |
| 2 of 4 steps (50%) done | |
| 3 of 4 steps (75%) done | |
| 4 of 4 steps (100%) done | |
| .Provided cores: 3 | |
| Rules claiming more threads will be scaled down. | |
| Job counts: | |
| count jobs | |
| 1 1 | |
| 1 | |
| rule 1: | |
| input: test.in | |
| output: test.out | |
| 1 of 1 steps (100%) done | |
| .Provided cluster nodes: 1 | |
| Job counts: | |
| count jobs | |
| 1 indelrealigner | |
| 1 indexbam | |
| 1 realignertargetcreator | |
| 3 | |
| rule indexbam: | |
| input: test.bam | |
| output: test.bam.bai | |
| wildcards: base=test | |
| 1 of 3 steps (33%) done | |
| rule realignertargetcreator: | |
| input: test.bam, test.bam.bai | |
| output: test.intervals | |
| wildcards: base=test | |
| threads: 32 | |
| 2 of 3 steps (67%) done | |
| rule indelrealigner: | |
| input: test.intervals, test.bam, test.bam.bai | |
| output: test.realigned.bam | |
| wildcards: base=test | |
| Removing temporary output file test.intervals. | |
| Removing temporary output file test.bam.bai. | |
| 3 of 3 steps (100%) done | |
| .Provided cores: 3 | |
| Rules claiming more threads will be scaled down. | |
| Job counts: | |
| count jobs | |
| 1 1 | |
| 1 | |
| rule 1: | |
| input: test.in1, test.in2 | |
| output: test.out | |
| test.in1 test.in2 | |
| 1 of 1 steps (100%) done | |
| .Executing subworkflow test02. | |
| Provided cores: 3 | |
| Rules claiming more threads will be scaled down. | |
| Job counts: | |
| count jobs | |
| 1 rule1 | |
| 1 rule2 | |
| 2 | |
| rule rule1: | |
| input: test.in | |
| output: test.inter | |
| log: logs/test.log | |
| wildcards: name=test | |
| 1 of 2 steps (50%) done | |
| rule rule2: | |
| input: test.inter | |
| output: test.out | |
| wildcards: name=test | |
| 2 of 2 steps (100%) done | |
| Executing main workflow. | |
| Provided cores: 3 | |
| Rules claiming more threads will be scaled down. | |
| Job counts: | |
| count jobs | |
| 1 1 | |
| 1 2 | |
| 2 | |
| rule 2: | |
| input: /build/snakemake-3.9.0+dfsg/.pybuild/pythonX.Y_3.5/build/.testhkkneh7t/subworkdir/test.out | |
| output: test.out | |
| 1 of 2 steps (50%) done | |
| localrule 1: | |
| input: test.out | |
| 2 of 2 steps (100%) done | |
| .Provided cores: 3 | |
| Rules claiming more threads will be scaled down. | |
| Job counts: | |
| count jobs | |
| 3 2 | |
| 1 all | |
| 4 | |
| rule 2: | |
| input: test.1.txt | |
| output: test.1.out | |
| wildcards: id=1 | |
| rule 2: | |
| input: test.0.txt | |
| output: test.0.out | |
| wildcards: id=0 | |
| rule 2: | |
| input: test.2.txt | |
| output: test.2.out | |
| wildcards: id=2 | |
| 1 of 4 steps (25%) done | |
| 2 of 4 steps (50%) done | |
| 3 of 4 steps (75%) done | |
| localrule all: | |
| input: test.0.out, test.1.out, test.2.out | |
| 4 of 4 steps (100%) done | |
| .Provided cores: 3 | |
| Rules claiming more threads will be scaled down. | |
| Job counts: | |
| count jobs | |
| 1 1 | |
| 1 | |
| rule 1: | |
| output: test.out | |
| 1 of 1 steps (100%) done | |
| .Provided cores: 3 | |
| Rules claiming more threads will be scaled down. | |
| Job counts: | |
| count jobs | |
| 1 a | |
| 1 all | |
| 1 b | |
| 1 d | |
| 4 | |
| rule a: | |
| output: test.in | |
| 1 of 4 steps (25%) done | |
| rule b: | |
| input: test.in | |
| output: test.inter | |
| 2 of 4 steps (50%) done | |
| rule d: | |
| input: test.inter | |
| output: test.out | |
| 3 of 4 steps (75%) done | |
| localrule all: | |
| input: test.out | |
| 4 of 4 steps (100%) done | |
| .Provided cores: 3 | |
| Rules claiming more threads will be scaled down. | |
| Job counts: | |
| count jobs | |
| 3 2 | |
| 1 3 | |
| 1 all | |
| 5 | |
| rule 3: | |
| output: test.in | |
| 1 of 5 steps (20%) done | |
| rule 2: | |
| input: test.in | |
| output: test.1.out | |
| wildcards: i=1 | |
| rule 2: | |
| input: test.in | |
| output: test.0.out | |
| wildcards: i=0 | |
| rule 2: | |
| input: test.in | |
| output: test.2.out | |
| wildcards: i=2 | |
| 2 of 5 steps (40%) done | |
| 3 of 5 steps (60%) done | |
| Removing temporary output file test.in. | |
| 4 of 5 steps (80%) done | |
| localrule all: | |
| input: test.0.out, test.1.out, test.2.out | |
| 5 of 5 steps (100%) done | |
| .Skipping test because of missing internet connection | |
| .Provided cores: 3 | |
| Rules claiming more threads will be scaled down. | |
| Job counts: | |
| count jobs | |
| 1 1 | |
| 1 | |
| rule 1: | |
| output: test.out | |
| Touching output file test.out. | |
| 1 of 1 steps (100%) done | |
| .Provided cores: 3 | |
| Rules claiming more threads will be scaled down. | |
| Job counts: | |
| count jobs | |
| 1 1 | |
| 1 | |
| rule 1: | |
| output: test.out | |
| 1 of 1 steps (100%) done | |
| .Provided cores: 3 | |
| Rules claiming more threads will be scaled down. | |
| Job counts: | |
| count jobs | |
| 1 all | |
| 1 cp | |
| 1 echo | |
| 3 | |
| rule echo: | |
| output: test.out | |
| wildcards: prefix=test | |
| 1 of 3 steps (33%) done | |
| rule cp: | |
| input: test.out | |
| output: test.out.copy | |
| wildcards: prefix=test | |
| Removing temporary output file test.out. | |
| 2 of 3 steps (67%) done | |
| rule all: | |
| input: test.out.copy | |
| output: config.yaml | |
| Removing temporary output file test.out.copy. | |
| 3 of 3 steps (100%) done | |
| .Provided cores: 3 | |
| Rules claiming more threads will be scaled down. | |
| Job counts: | |
| count jobs | |
| 1 all | |
| 1 globalwildcard | |
| 3 infile | |
| 1 localwildcard | |
| 1 stringwildcard | |
| 7 | |
| rule infile: | |
| output: localbar.in | |
| wildcards: foo=localbar | |
| rule infile: | |
| output: globalbar.in | |
| wildcards: foo=globalbar | |
| rule infile: | |
| output: stringbar.in | |
| wildcards: foo=stringbar | |
| 1 of 7 steps (14%) done | |
| rule localwildcard: | |
| input: localbar.in | |
| output: localbar.txt | |
| log: localbar.log | |
| wildcards: foo=localbar | |
| 2 of 7 steps (29%) done | |
| rule globalwildcard: | |
| input: globalbar.in | |
| output: globalbar.txt | |
| log: globalbar.log | |
| wildcards: foo=globalbar | |
| Removing temporary output file localbar.in. | |
| 3 of 7 steps (43%) done | |
| rule stringwildcard: | |
| input: stringbar.in | |
| output: stringbar.txt | |
| log: stringbar.log | |
| wildcards: foo=stringbar | |
| 4 of 7 steps (57%) done | |
| Removing temporary output file globalbar.in. | |
| 5 of 7 steps (71%) done | |
| Removing temporary output file stringbar.in. | |
| 6 of 7 steps (86%) done | |
| localrule all: | |
| input: stringbar.txt, localbar.txt, globalbar.txt | |
| 7 of 7 steps (100%) done | |
| .Provided cores: 3 | |
| Rules claiming more threads will be scaled down. | |
| Job counts: | |
| count jobs | |
| 1 2 | |
| 1 all | |
| 2 | |
| rule 2: | |
| benchmark: test.benchmark.txt | |
| wildcards: v=test | |
| 1 of 2 steps (50%) done | |
| localrule all: | |
| input: test.benchmark.txt | |
| 2 of 2 steps (100%) done | |
| .Provided cores: 3 | |
| Rules claiming more threads will be scaled down. | |
| Job counts: | |
| count jobs | |
| 1 1 | |
| 1 2 | |
| 2 | |
| rule 2: | |
| output: a.txt, b.txt, c.txt | |
| Removing temporary output file c.txt. | |
| Removing temporary output file b.txt. | |
| 1 of 2 steps (50%) done | |
| rule 1: | |
| input: a.txt | |
| output: test.txt | |
| Removing temporary output file a.txt. | |
| 2 of 2 steps (100%) done | |
| .Provided cores: 3 | |
| Rules claiming more threads will be scaled down. | |
| Job counts: | |
| count jobs | |
| 1 all | |
| 1 b | |
| 2 | |
| rule b: | |
| output: test.out | |
| 1 of 2 steps (50%) done | |
| localrule all: | |
| input: test.out | |
| 2 of 2 steps (100%) done | |
| .wildcard constraints in inputs are ignored | |
| Provided cluster nodes: 1 | |
| Job counts: | |
| count jobs | |
| 1 all | |
| 1 cut | |
| 1 merge | |
| 1 split | |
| 4 | |
| rule split: | |
| input: test.txt | |
| output: prefix{*}.txt (dynamic) | |
| Subsequent jobs will be added dynamically depending on the output of this rule | |
| wildcard constraints in inputs are ignored | |
| Dynamically updating jobs | |
| 1 of 7 steps (14%) done | |
| rule cut: | |
| input: prefixab.txt | |
| output: ab_cut.txt | |
| wildcards: split_id=ab | |
| wildcard constraints in inputs are ignored | |
| 2 of 7 steps (29%) done | |
| rule cut: | |
| input: prefixaa.txt | |
| output: aa_cut.txt | |
| wildcards: split_id=aa | |
| wildcard constraints in inputs are ignored | |
| 3 of 7 steps (43%) done | |
| rule cut: | |
| input: prefixac.txt | |
| output: ac_cut.txt | |
| wildcards: split_id=ac | |
| wildcard constraints in inputs are ignored | |
| 4 of 7 steps (57%) done | |
| rule cut: | |
| input: prefixad.txt | |
| output: ad_cut.txt | |
| wildcards: split_id=ad | |
| wildcard constraints in inputs are ignored | |
| 5 of 7 steps (71%) done | |
| rule merge: | |
| input: ab_cut.txt, ad_cut.txt, aa_cut.txt, ac_cut.txt | |
| output: out.txt | |
| wildcard constraints in inputs are ignored | |
| 6 of 7 steps (86%) done | |
| localrule all: | |
| input: out.txt | |
| 7 of 7 steps (100%) done | |
| .Provided cores: 3 | |
| Rules claiming more threads will be scaled down. | |
| Job counts: | |
| count jobs | |
| 1 all | |
| 3 concatenate_clusters | |
| 3 init | |
| 3 random_clusters | |
| 10 | |
| rule init: | |
| output: a.init | |
| wildcards: sample=a | |
| rule init: | |
| output: c.init | |
| wildcards: sample=c | |
| rule init: | |
| output: b.init | |
| wildcards: sample=b | |
| 1 of 10 steps (10%) done | |
| rule random_clusters: | |
| input: a.init | |
| output: a_clusters/cluster_{*} (dynamic) | |
| wildcards: sample=a | |
| Subsequent jobs will be added dynamically depending on the output of this rule | |
| 2 of 10 steps (20%) done | |
| rule random_clusters: | |
| input: c.init | |
| output: c_clusters/cluster_{*} (dynamic) | |
| wildcards: sample=c | |
| Subsequent jobs will be added dynamically depending on the output of this rule | |
| 3 of 10 steps (30%) done | |
| rule random_clusters: | |
| input: b.init | |
| output: b_clusters/cluster_{*} (dynamic) | |
| wildcards: sample=b | |
| Subsequent jobs will be added dynamically depending on the output of this rule | |
| Dynamically updating jobs | |
| 4 of 11 steps (36%) done | |
| rule concatenate_clusters: | |
| input: c_clusters/cluster_0, c_clusters/cluster_2, c_clusters/cluster_1 | |
| output: c_final | |
| wildcards: sample=c | |
| 5 of 11 steps (45%) done | |
| Dynamically updating jobs | |
| 6 of 10 steps (60%) done | |
| rule concatenate_clusters: | |
| input: a_clusters/cluster_0, a_clusters/cluster_2, a_clusters/cluster_1 | |
| output: a_final | |
| wildcards: sample=a | |
| 7 of 10 steps (70%) done | |
| Dynamically updating jobs | |
| 8 of 9 steps (89%) done | |
| rule concatenate_clusters: | |
| input: b_clusters/cluster_0, b_clusters/cluster_1, b_clusters/cluster_2 | |
| output: b_final | |
| wildcards: sample=b | |
| 9 of 9 steps (100%) done | |
| localrule all: | |
| input: a_final, b_final, c_final | |
| 10 of 9 steps (111%) done | |
| .Provided cores: 3 | |
| Rules claiming more threads will be scaled down. | |
| Job counts: | |
| count jobs | |
| 1 1 | |
| 1 | |
| rule 1: | |
| output: test.out | |
| 1 of 1 steps (100%) done | |
| .Provided cores: 3 | |
| Rules claiming more threads will be scaled down. | |
| Job counts: | |
| count jobs | |
| 1 all | |
| 1 test_rule | |
| 1 test_second_rule | |
| 3 | |
| rule test_rule: | |
| output: test1.txt | |
| 1 of 3 steps (33%) done | |
| rule test_second_rule: | |
| input: test1.txt | |
| output: test2.txt | |
| 2 of 3 steps (67%) done | |
| localrule all: | |
| input: test2.txt | |
| 3 of 3 steps (100%) done | |
| .Provided cores: 3 | |
| Rules claiming more threads will be scaled down. | |
| Job counts: | |
| count jobs | |
| 1 1 | |
| 1 | |
| rule 1: | |
| output: test.out | |
| 1 of 1 steps (100%) done | |
| ..Provided cluster nodes: 1 | |
| Job counts: | |
| count jobs | |
| 1 all | |
| 1 compute1 | |
| 5 compute2 | |
| 1 gather | |
| 8 | |
| rule compute1: | |
| input: test.in | |
| output: test.1.inter, test.2.inter, test.3.inter, test.4.inter, test.5.inter | |
| wildcards: name=test | |
| 8770 | |
| 1 of 8 steps (12%) done | |
| rule compute2: | |
| input: test.2.inter | |
| output: test.2.inter2 | |
| wildcards: chromosome=2, name=test | |
| 19004 | |
| copy | |
| 2 of 8 steps (25%) done | |
| rule compute2: | |
| input: test.3.inter | |
| output: test.3.inter2 | |
| wildcards: chromosome=3, name=test | |
| 630 | |
| copy | |
| 3 of 8 steps (38%) done | |
| rule compute2: | |
| input: test.1.inter | |
| output: test.1.inter2 | |
| wildcards: chromosome=1, name=test | |
| 10653 | |
| copy | |
| 4 of 8 steps (50%) done | |
| rule compute2: | |
| input: test.5.inter | |
| output: test.5.inter2 | |
| wildcards: chromosome=5, name=test | |
| 9581 | |
| copy | |
| 5 of 8 steps (62%) done | |
| rule compute2: | |
| input: test.4.inter | |
| output: test.4.inter2 | |
| wildcards: chromosome=4, name=test | |
| 13942 | |
| copy | |
| 6 of 8 steps (75%) done | |
| rule gather: | |
| input: test.1.inter2, test.2.inter2, test.3.inter2, test.4.inter2, test.5.inter2 | |
| output: test.predictions | |
| wildcards: name=test | |
| 20838 | |
| 7 of 8 steps (88%) done | |
| localrule all: | |
| input: test.predictions, test.2.inter2 | |
| 8 of 8 steps (100%) done | |
| .Provided cores: 3 | |
| Rules claiming more threads will be scaled down. | |
| Job counts: | |
| count jobs | |
| 1 all | |
| 2 four | |
| 2 one | |
| 2 three | |
| 2 two | |
| 9 | |
| rule one: | |
| input: b | |
| output: 1.b | |
| wildcards: sample=b | |
| rule one: | |
| input: a | |
| output: 1.a | |
| wildcards: sample=a | |
| 1 of 9 steps (11%) done | |
| rule two: | |
| input: 1.b | |
| output: 2.b | |
| wildcards: sample=b | |
| 2 of 9 steps (22%) done | |
| rule two: | |
| input: 1.a | |
| output: 2.a | |
| wildcards: sample=a | |
| Removing temporary output file 1.b. | |
| 3 of 9 steps (33%) done | |
| Removing temporary output file 1.a. | |
| WorkflowError: | |
| File 2.b seems to be a broken symlink. | |
| 4 of 9 steps (44%) done | |
| .Nothing to be done. | |
| .Provided cores: 3 | |
| Rules claiming more threads will be scaled down. | |
| Job counts: | |
| count jobs | |
| 1 1 | |
| 1 2 | |
| 2 | |
| rule 2: | |
| output: test.in | |
| 1 of 2 steps (50%) done | |
| rule 1: | |
| input: test.in | |
| output: test.out | |
| list() | |
| [1] 1 | |
| list() | |
| $test | |
| [1] TRUE | |
| [[1]] | |
| [1] TRUE | |
| $xy | |
| [1] TRUE | |
| Read 3 items | |
| 2 of 2 steps (100%) done | |
| .Provided cores: 3 | |
| Rules claiming more threads will be scaled down. | |
| Job counts: | |
| count jobs | |
| 1 absolute_link | |
| 1 absolute_stat | |
| 1 all | |
| 1 benchmark | |
| 1 benchmark_stat | |
| 1 full | |
| 1 log_stat | |
| 1 protected | |
| 1 shallow | |
| 1 touch | |
| 10 | |
| rule absolute_link: | |
| input: test.in | |
| output: absolute.out, absolute_link.out | |
| rule touch: | |
| output: touched.out | |
| log: shadow.log | |
| rule benchmark: | |
| output: benchmark.out | |
| benchmark: benchmark.txt | |
| 1 of 10 steps (10%) done | |
| rule shallow: | |
| input: test.in | |
| output: simple_shallow.out | |
| Touching output file touched.out. | |
| 2 of 10 steps (20%) done | |
| rule full: | |
| input: test.in | |
| output: simple_full.out | |
| Touching output file benchmark.out. | |
| 3 of 10 steps (30%) done | |
| rule absolute_stat: | |
| input: absolute_link.out | |
| output: absolute_exists.out | |
| Touching output file absolute_exists.out. | |
| 4 of 10 steps (40%) done | |
| rule benchmark_stat: | |
| input: benchmark.out | |
| output: benchmark_exists.out | |
| Touching output file benchmark_exists.out. | |
| 5 of 10 steps (50%) done | |
| rule protected: | |
| output: protected.out | |
| 6 of 10 steps (60%) done | |
| rule log_stat: | |
| input: touched.out | |
| output: log_exists.out | |
| Touching output file log_exists.out. | |
| 7 of 10 steps (70%) done | |
| 8 of 10 steps (80%) done | |
| Write-protecting output file protected.out. | |
| 9 of 10 steps (90%) done | |
| localrule all: | |
| input: simple_shallow.out, simple_full.out, absolute_exists.out, touched.out, log_exists.out, protected.out, benchmark_exists.out | |
| 10 of 10 steps (100%) done | |
| .Provided cores: 3 | |
| Rules claiming more threads will be scaled down. | |
| Job counts: | |
| count jobs | |
| 2 first_wildcard | |
| 1 levelone | |
| 1 leveltwo_first | |
| 1 leveltwo_second | |
| 2 second_wildcard | |
| 2 zeroth_wildcard | |
| 9 | |
| rule zeroth_wildcard: | |
| output: test1.txt | |
| wildcards: num=1 | |
| rule levelone: | |
| output: levelone.txt | |
| rule zeroth_wildcard: | |
| output: test2.txt | |
| wildcards: num=2 | |
| 1 of 9 steps (11%) done | |
| rule first_wildcard: | |
| input: test1.txt | |
| output: test1.first | |
| wildcards: num=1 | |
| 2 of 9 steps (22%) done | |
| rule leveltwo_first: | |
| input: levelone.txt | |
| output: leveltwo_first.txt | |
| 3 of 9 steps (33%) done | |
| rule first_wildcard: | |
| input: test2.txt | |
| output: test2.first | |
| wildcards: num=2 | |
| 4 of 9 steps (44%) done | |
| rule second_wildcard: | |
| input: test1.first | |
| output: test1.second | |
| wildcards: num=1 | |
| 5 of 9 steps (56%) done | |
| rule leveltwo_second: | |
| input: levelone.txt | |
| output: leveltwo_second.txt | |
| 6 of 9 steps (67%) done | |
| rule second_wildcard: | |
| input: test2.first | |
| output: test2.second | |
| wildcards: num=2 | |
| 7 of 9 steps (78%) done | |
| 8 of 9 steps (89%) done | |
| 9 of 9 steps (100%) done | |
| .Provided cores: 3 | |
| Rules claiming more threads will be scaled down. | |
| Job counts: | |
| count jobs | |
| 2 first_wildcard | |
| 1 independent | |
| 1 levelone | |
| 1 leveltwo_first | |
| 1 leveltwo_second | |
| 2 second_wildcard | |
| 2 zeroth_wildcard | |
| 10 | |
| rule zeroth_wildcard: | |
| output: test1.txt | |
| wildcards: num=1 | |
| rule zeroth_wildcard: | |
| output: test2.txt | |
| wildcards: num=2 | |
| rule levelone: | |
| output: levelone.txt | |
| 1 of 10 steps (10%) done | |
| rule first_wildcard: | |
| input: test1.txt | |
| output: test1.first | |
| wildcards: num=1 | |
| 2 of 10 steps (20%) done | |
| rule first_wildcard: | |
| input: test2.txt | |
| output: test2.first | |
| wildcards: num=2 | |
| 3 of 10 steps (30%) done | |
| rule leveltwo_first: | |
| input: levelone.txt | |
| output: leveltwo_first.txt | |
| 4 of 10 steps (40%) done | |
| rule second_wildcard: | |
| input: test1.first | |
| output: test1.second | |
| wildcards: num=1 | |
| 5 of 10 steps (50%) done | |
| rule second_wildcard: | |
| input: test2.first | |
| output: test2.second | |
| wildcards: num=2 | |
| 6 of 10 steps (60%) done | |
| rule independent: | |
| output: independent.txt | |
| 7 of 10 steps (70%) done | |
| rule leveltwo_second: | |
| input: levelone.txt | |
| output: leveltwo_second.txt | |
| 8 of 10 steps (80%) done | |
| 9 of 10 steps (90%) done | |
| 10 of 10 steps (100%) done | |
| .Provided cores: 3 | |
| Rules claiming more threads will be scaled down. | |
| Job counts: | |
| count jobs | |
| 1 1 | |
| 1 | |
| rule 1: | |
| output: test.out | |
| 1 of 1 steps (100%) done | |
| .Provided cores: 1 | |
| Rules claiming more threads will be scaled down. | |
| Job counts: | |
| count jobs | |
| 1 main | |
| 1 make_the_dir | |
| 1 make_the_file | |
| 1 make_the_links | |
| 4 | |
| rule make_the_dir: | |
| input: input.file | |
| output: output.dir | |
| 1 of 4 steps (25%) done | |
| rule make_the_links: | |
| input: input.file | |
| output: output.link, output.dirlink | |
| 2 of 4 steps (50%) done | |
| rule make_the_file: | |
| input: input.file | |
| output: output.file, foo/output.foo.file | |
| 3 of 4 steps (75%) done | |
| localrule main: | |
| input: output.file, output.dir, output.link, output.dirlink | |
| 4 of 4 steps (100%) done | |
| .Provided cores: 3 | |
| Rules claiming more threads will be scaled down. | |
| Job counts: | |
| count jobs | |
| 1 main | |
| 1 test1 | |
| 1 test2 | |
| 1 test3 | |
| 4 | |
| rule test1: | |
| input: foo.1.in, foo.2.in, foo.3.in | |
| output: foo.out1 | |
| wildcards: base=foo | |
| rule test2: | |
| input: foo.1.in, foo.2.in, foo.3.in | |
| output: foo.out2 | |
| wildcards: base=foo | |
| rule test3: | |
| input: foo.1.in, foo.2.in, foo.3.in | |
| output: foo.out3 | |
| wildcards: base=foo | |
| 1 of 4 steps (25%) done | |
| 2 of 4 steps (50%) done | |
| 3 of 4 steps (75%) done | |
| localrule main: | |
| input: foo.out1, foo.out2, foo.out3 | |
| 4 of 4 steps (100%) done | |
| ..: | |
| total 4 | |
| -rw-r--r-- 1 pbuilder pbuilder 2496 Dec 12 01:43 Snakefile | |
| -rw-r--r-- 1 pbuilder pbuilder 0 Dec 12 00:43 input_file | |
| lrwxrwxrwx 1 pbuilder pbuilder 10 Dec 11 21:43 input_link -> input_file | |
| lrwxrwxrwx 1 pbuilder pbuilder 10 Dec 11 23:43 output_link -> input_link | |
| Provided cores: 3 | |
| Rules claiming more threads will be scaled down. | |
| Job counts: | |
| count jobs | |
| 1 main | |
| 1 make_output | |
| 2 | |
| rule make_output: | |
| input: input_link | |
| output: output_link | |
| ln: failed to create symbolic link 'input_link': File exists | |
| [31mCalledProcessError in line 37 of /build/snakemake-3.9.0+dfsg/.pybuild/pythonX.Y_3.5/build/tests/test_symlink_time_handling/Snakefile: | |
| Command 'ln -s input_file input_link' returned non-zero exit status 1 | |
| File "/build/snakemake-3.9.0+dfsg/.pybuild/pythonX.Y_3.5/build/tests/test_symlink_time_handling/Snakefile", line 37, in <module>[0m | |
| Removing output files of failed job make_output since they might be corrupted: | |
| output_link | |
| Will exit after finishing currently running jobs. | |
| Exiting because a job execution failed. Look above for error message | |
| FProvided cores: 3 | |
| Rules claiming more threads will be scaled down. | |
| Job counts: | |
| count jobs | |
| 1 merge | |
| 1 split | |
| 2 | |
| rule split: | |
| input: in.txt | |
| output: in_{*}.txt (dynamic) | |
| Subsequent jobs will be added dynamically depending on the output of this rule | |
| Dynamically updating jobs | |
| 1 of 2 steps (50%) done | |
| rule merge: | |
| input: in_2.txt, in_1.txt | |
| output: out.txt | |
| 2 of 2 steps (100%) done | |
| ...Provided cores: 3 | |
| Rules claiming more threads will be scaled down. | |
| Job counts: | |
| count jobs | |
| 1 1 | |
| 1 | |
| rule 1: | |
| input: test.in | |
| output: test.out | |
| a stderr message | |
| a stdout message | |
| 1 of 1 steps (100%) done | |
| .Provided cores: 3 | |
| Rules claiming more threads will be scaled down. | |
| Job counts: | |
| count jobs | |
| 1 1 | |
| 1 | |
| rule 1: | |
| input: test.in | |
| output: test.out | |
| log: test.log | |
| 1 of 1 steps (100%) done | |
| .Provided cores: 3 | |
| Rules claiming more threads will be scaled down. | |
| Job counts: | |
| count jobs | |
| 1 1 | |
| 1 | |
| rule 1: | |
| input: test.in | |
| output: test.out | |
| log: test.log | |
| a stdout message | |
| 1 of 1 steps (100%) done | |
| .Provided cores: 3 | |
| Rules claiming more threads will be scaled down. | |
| Job counts: | |
| count jobs | |
| 1 1 | |
| 1 | |
| rule 1: | |
| input: test.in | |
| output: test.out | |
| log: test.log | |
| a stderr message | |
| 1 of 1 steps (100%) done | |
| .Provided cores: 3 | |
| Rules claiming more threads will be scaled down. | |
| Job counts: | |
| count jobs | |
| 1 1 | |
| 1 | |
| rule 1: | |
| input: test.in | |
| output: test.out | |
| log: test.log | |
| 1 of 1 steps (100%) done | |
| .Provided cores: 3 | |
| Rules claiming more threads will be scaled down. | |
| Job counts: | |
| count jobs | |
| 1 indelrealigner | |
| 1 indexbam | |
| 1 realignertargetcreator | |
| 3 | |
| Resources before job selection: {'_nodes': 9223372036854775807, '_cores': 3} | |
| Ready jobs (1): | |
| indexbam | |
| Selected jobs (1): | |
| indexbam | |
| Resources after job selection: {'_nodes': 9223372036854775806, '_cores': 2} | |
| rule indexbam: | |
| input: test bam file.bam | |
| output: test bam file.bam.bai | |
| wildcards: base=test bam file | |
| touch 'test bam file.bam.bai' | |
| Releasing 1 _nodes (now 9223372036854775807). | |
| Releasing 1 _cores (now 3). | |
| 1 of 3 steps (33%) done | |
| Resources before job selection: {'_nodes': 9223372036854775807, '_cores': 3} | |
| Ready jobs (1): | |
| realignertargetcreator | |
| Selected jobs (1): | |
| realignertargetcreator | |
| Resources after job selection: {'_nodes': 9223372036854775806, '_cores': 0} | |
| rule realignertargetcreator: | |
| input: test bam file.bam, test bam file.bam.bai | |
| output: test bam file.intervals | |
| wildcards: base=test bam file | |
| threads: 3 | |
| touch 'test bam file.intervals' | |
| Releasing 1 _nodes (now 9223372036854775807). | |
| Releasing 3 _cores (now 3). | |
| 2 of 3 steps (67%) done | |
| Resources before job selection: {'_nodes': 9223372036854775807, '_cores': 3} | |
| Ready jobs (1): | |
| indelrealigner | |
| Selected jobs (1): | |
| indelrealigner | |
| Resources after job selection: {'_nodes': 9223372036854775806, '_cores': 2} | |
| rule indelrealigner: | |
| input: test bam file.intervals, test bam file.bam, test bam file.bam.bai | |
| output: test bam file realigned.bam | |
| wildcards: base=test bam file | |
| touch 'test bam file realigned.bam' | |
| Removing temporary output file test bam file.bam.bai. | |
| Removing temporary output file test bam file.intervals. | |
| Releasing 1 _nodes (now 9223372036854775807). | |
| Releasing 1 _cores (now 3). | |
| 3 of 3 steps (100%) done | |
| unlocking | |
| removing lock | |
| removing lock | |
| removed all locks | |
| ..Provided cores: 3 | |
| Rules claiming more threads will be scaled down. | |
| Ignored resources: mem_gb | |
| Job counts: | |
| count jobs | |
| 1 a | |
| 1 | |
| rule a: | |
| input: test1.in, test2.in | |
| output: test.out | |
| resources: mem_gb=1 | |
| 1 of 1 steps (100%) done | |
| .Provided cores: 3 | |
| Rules claiming more threads will be scaled down. | |
| Job counts: | |
| count jobs | |
| 1 a | |
| 1 | |
| rule a: | |
| output: test.out | |
| 1 of 1 steps (100%) done | |
| .Provided cores: 3 | |
| Rules claiming more threads will be scaled down. | |
| Job counts: | |
| count jobs | |
| 1 2 | |
| 1 all | |
| 2 | |
| rule 2: | |
| input: iteration-01.txt | |
| output: iteration-02.txt | |
| 1 of 2 steps (50%) done | |
| localrule all: | |
| input: iteration-02.txt | |
| 2 of 2 steps (100%) done | |
| .Provided cores: 3 | |
| Rules claiming more threads will be scaled down. | |
| Job counts: | |
| count jobs | |
| 1 all | |
| 1 b | |
| 2 | |
| rule b: | |
| input: a.in | |
| output: b.out | |
| 1 of 2 steps (50%) done | |
| localrule all: | |
| input: b.out | |
| 2 of 2 steps (100%) done | |
| . | |
| ====================================================================== | |
| FAIL: tests.tests.test_symlink_time_handling | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "/usr/lib/python3/dist-packages/nose/case.py", line 198, in runTest | |
| self.test(*self.arg) | |
| File "/build/snakemake-3.9.0+dfsg/.pybuild/pythonX.Y_3.5/build/tests/tests.py", line 345, in test_symlink_time_handling | |
| run(dpath("test_symlink_time_handling")) | |
| File "/build/snakemake-3.9.0+dfsg/.pybuild/pythonX.Y_3.5/build/tests/tests.py", line 89, in run | |
| assert success, "expected successful execution" | |
| AssertionError: expected successful execution | |
| -------------------- >> begin captured logging << -------------------- | |
| snakemake.logging: WARNING: Provided cores: 3 | |
| snakemake.logging: WARNING: Rules claiming more threads will be scaled down. | |
| snakemake.logging: WARNING: Job counts: | |
| count jobs | |
| 1 main | |
| 1 make_output | |
| 2 | |
| snakemake.logging: INFO: rule make_output: | |
| input: input_link | |
| output: output_link | |
| snakemake.logging: INFO: | |
| snakemake.logging: WARNING: Removing output files of failed job make_output since they might be corrupted: | |
| output_link | |
| snakemake.logging: WARNING: Will exit after finishing currently running jobs. | |
| snakemake.logging: ERROR: Exiting because a job execution failed. Look above for error message | |
| --------------------- >> end captured logging << --------------------- | |
| ---------------------------------------------------------------------- | |
| Ran 70 tests in 37.333s | |
| FAILED (failures=1) | |
| E: pybuild pybuild:276: test: plugin distutils failed with: exit code=1: cd /build/snakemake-3.9.0+dfsg/.pybuild/pythonX.Y_3.5/build; python3.5 -m nose tests | |
| dh_auto_test: pybuild --test --test-nose -i python{version} -p 3.5 returned exit code 13 | |
| debian/rules:16: recipe for target 'build' failed | |
| make: *** [build] Error 25 | |
| dpkg-buildpackage: error: debian/rules build gave error exit status 2 | |
| [0mI: copying local configuration[0m | |
| [0;31mE: Failed autobuilding of package[0m | |
| [0mI: user script /var/cache/pbuilder/build/cow.876/tmp/hooks/C10shell starting[0m | |
| Reading package lists... | |
| Building dependency tree... | |
| Reading state information... | |
| bash is already the newest version (4.4-2). | |
| The following additional packages will be installed: | |
| libgpm2 vim-common vim-runtime xxd | |
| Suggested packages: | |
| gpm ctags vim-doc vim-scripts | |
| The following NEW packages will be installed: | |
| less libgpm2 vim vim-common vim-runtime xxd | |
| 0 upgraded, 6 newly installed, 0 to remove and 0 not upgraded. | |
| Need to get 6883 kB of archives. | |
| After this operation, 31.4 MB of additional disk space will be used. | |
| Get:1 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 xxd amd64 2:8.0.0095-1 [131 kB] | |
| Get:2 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 vim-common all 2:8.0.0095-1 [155 kB] | |
| Get:3 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 less amd64 481-2.1 [126 kB] | |
| Get:4 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 libgpm2 amd64 1.20.4-6.2 [33.9 kB] | |
| Get:5 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 vim-runtime all 2:8.0.0095-1 [5405 kB] | |
| Get:6 http://localhost:3142/ftp.au.debian.org/debian sid/main amd64 vim amd64 2:8.0.0095-1 [1032 kB] | |
| debconf: delaying package configuration, since apt-utils is not installed | |
| Fetched 6883 kB in 0s (93.4 MB/s) | |
| Selecting previously unselected package xxd. | |
| (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20072 files and directories currently installed.) | |
| Preparing to unpack .../0-xxd_2%3a8.0.0095-1_amd64.deb ... | |
| Unpacking xxd (2:8.0.0095-1) ... | |
| Selecting previously unselected package vim-common. | |
| Preparing to unpack .../1-vim-common_2%3a8.0.0095-1_all.deb ... | |
| Unpacking vim-common (2:8.0.0095-1) ... | |
| Selecting previously unselected package less. | |
| Preparing to unpack .../2-less_481-2.1_amd64.deb ... | |
| Unpacking less (481-2.1) ... | |
| Selecting previously unselected package libgpm2:amd64. | |
| Preparing to unpack .../3-libgpm2_1.20.4-6.2_amd64.deb ... | |
| Unpacking libgpm2:amd64 (1.20.4-6.2) ... | |
| Selecting previously unselected package vim-runtime. | |
| Preparing to unpack .../4-vim-runtime_2%3a8.0.0095-1_all.deb ... | |
| Adding 'diversion of /usr/share/vim/vim80/doc/help.txt to /usr/share/vim/vim80/doc/help.txt.vim-tiny by vim-runtime' | |
| Adding 'diversion of /usr/share/vim/vim80/doc/tags to /usr/share/vim/vim80/doc/tags.vim-tiny by vim-runtime' | |
| Unpacking vim-runtime (2:8.0.0095-1) ... | |
| Selecting previously unselected package vim. | |
| Preparing to unpack .../5-vim_2%3a8.0.0095-1_amd64.deb ... | |
| Unpacking vim (2:8.0.0095-1) ... | |
| Setting up less (481-2.1) ... | |
| Processing triggers for mime-support (3.60) ... | |
| Setting up xxd (2:8.0.0095-1) ... | |
| Setting up libgpm2:amd64 (1.20.4-6.2) ... | |
| Processing triggers for libc-bin (2.24-8) ... | |
| Setting up vim-common (2:8.0.0095-1) ... | |
| Processing triggers for man-db (2.7.5-2) ... | |
| Setting up vim-runtime (2:8.0.0095-1) ... | |
| Setting up vim (2:8.0.0095-1) ... | |
| update-alternatives: using /usr/bin/vim.basic to provide /usr/bin/vim (vim) in auto mode | |
| update-alternatives: using /usr/bin/vim.basic to provide /usr/bin/vimdiff (vimdiff) in auto mode | |
| update-alternatives: using /usr/bin/vim.basic to provide /usr/bin/rvim (rvim) in auto mode | |
| update-alternatives: using /usr/bin/vim.basic to provide /usr/bin/rview (rview) in auto mode | |
| update-alternatives: using /usr/bin/vim.basic to provide /usr/bin/vi (vi) in auto mode | |
| update-alternatives: using /usr/bin/vim.basic to provide /usr/bin/view (view) in auto mode | |
| update-alternatives: using /usr/bin/vim.basic to provide /usr/bin/ex (ex) in auto mode | |
| update-alternatives: using /usr/bin/vim.basic to provide /usr/bin/editor (editor) in auto mode | |
| W: --force-yes is deprecated, use one of the options starting with --allow instead. | |
| [0mI: user script /var/cache/pbuilder/build/cow.876/tmp/hooks/C10shell finished[0m | |
| [0mI: unmounting /dev/shm filesystem[0m | |
| [0mI: unmounting dev/pts filesystem[0m | |
| [0mI: unmounting run/shm filesystem[0m | |
| [0mI: unmounting proc filesystem[0m | |
| [0mI: unmounting sys filesystem[0m | |
| [0mI: Cleaning COW directory[0m | |
| [0mI: forking: rm -rf /var/cache/pbuilder/build/cow.876[0m |
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