Translate script for Nader

fasta_translate.py

from Bio import SeqIO

input_file = "test.fasta"
output_file = "protein.fasta"

input_file_reader = SeqIO.parse(open(input_file), "fasta")
output_file_writer = open(output_file, "w")

translated_seqs = []

for seq in input_file_reader:
    seq.seq = seq.seq.translate()
    translated_seqs.append(seq)

SeqIO.write(translated_seqs, output_file_writer, "fasta")
output_file_writer.close()