seqan2.cc

#include <seqan/seq_io.h>

using namespace seqan;

int main(int argc, char **argv)
{
    std::string id, seq, qual;

    if (argc < 2) {
        return 1;
    }

    SeqFileIn seqFileIn(argv[1]);

    while (1) {
        readRecord(id, seq, qual, seqFileIn);
        std::cout << id << '\t' << seq << '\t' << qual << '\n';
    }

    return 0;
}