khmer-rp.cc

#include "read_parsers.hh"

int main(int argc, char **argv)
{
    khmer::read_parsers::Read read;
    size_t n_reads = 0;

    if (argc < 2) {
        return 1;
    }

    khmer::read_parsers::SeqAnParser seqFileIn(argv[1]);

    while (1) {
        seqFileIn.imprint_next_read(read);
        std::cout << n_reads++ << '\t' << read.name << '\t' << read.sequence
                  << '\t' << read.quality << '\n';
    }

    return 0;
}