kdoroschak

(py36) -bash-4.2$ rm -rf .git
(py36) -bash-4.2$ rm .gitattributes
(py36) -bash-4.2$ git init
Initialized empty Git repository in /disk1/pore_data/Porcupine-data/.git/
(py36) -bash-4.2$ git remote add origin git@github.com:uwmisl/Porcupine-data.git
(py36) -bash-4.2$ git add README.md; git commit -m "initial commit"
[master (root-commit) 4d255df] initial commit
 1 file changed, 1 insertion(+)
 create mode 100644 README.md
(py36) -bash-4.2$ git push -u --force origin master

kdoroschak

import pandas as pd
from matplotlib import pyplot as plt
import seaborn as sns
import matplotlib.patches as mpatches
sns.set(style="whitegrid", font_scale=1.8)

def diverging_stacked_bar(results, category_names=[], colors=[], symmetrical=False,
                          bar_width = 0.35):
    if len(category_names) % 2 == 0:  # even
        print(len(category_names))

kdoroschak

''' Python 2.7 progress bar
Code mostly taken from:
   https://stackoverflow.com/questions/3173320/text-progress-bar-in-the-console

I usually use this for simple for loops with long iterations to make sure it's
actually progressing without polluting stdout.
'''
import sys

kdoroschak

#!/bin/bash

input=$1

if [[ $input == *.zip ]]; then
	unzip -q -o -d "${input%.*}" "$input"
	in_dir="${input%.*}"/*
else
	in_dir=$input/*
fi

kdoroschak

# pip install ont-fast5-api

from ont_fast5_api import fast5_file
import uuid
import numpy as np

f5_fname = "sample.fast5"
mode = "r+" # Supported modes: ['r', 'r+', 'w', 'w-', 'x'], same meanings as h5py http://docs.h5py.org/en/latest/high/file.html
f5 = fast5_file.Fast5File(fname=f5_fname, mode=mode)

kdoroschak

#!/bin/sh


# this script does absolutely ZERO error checking.   however, it worked
# for me on a RHEL 6.3 machine on 2012-08-08.  clearly, the version numbers
# and/or URLs should be made variables.  cheers,  zmil...@cs.wisc.edu

install_dir=software/mosh
protobuf_version=3.4.0 
mosh_version=1.3.2 # https://mosh.org/mosh-1.3.2.tar.gz

kdoroschak

# Updates
sudo apt-get update
sudo apt-get -y dist-upgrade

# Install packages
sudo apt-get -y install vim hostapd dnsmasq

# Make my mouse poll properly
sudo vim /boot/cmdline.txt # add usbhid.mousepoll=0 to this file

kdoroschak

# Updates
sudo apt-get update
sudo apt-get -y dist-upgrade
sudo reboot

# Install packages
sudo apt-get -y install vim

# Make my mouse poll properly
sudo vim /boot/cmdline.txt # add usbhid.mousepoll=0 to this file