upgrade-server.sh

# Owned, and run by, the OMERO-server O.S. user
# Executed like ./upgrade-server.sh new-omero-version-dist.tar.gz

set -e
set -u
set -x

DIR=$1

# Your command to check status and stop OMERO.server
OMERO.server/bin/omero admin status --nodeonly && OMERO.server/bin/omero admin stop
# Copy the current OMERO config file
cp OMERO.server/etc/grid/config.xml $HOME/
# Copy the current mail-sending config file
cp OMERO.server/etc/blitz/mail-senders.xml $HOME/
# OMERO.server is a symlink
rm -f OMERO.server
ln -s $DIR OMERO.server
cd OMERO.server
# Prep the OMERO-dist with our current OMERO config file
cp $HOME/config.xml etc/grid/
# Prep the OMERO-dist with our current mail-sending config file
cp $HOME/mail-senders.xml etc/blitz/

# OMERO startup
bin/omero admin start

# Re-upload the OMERO.figure PDF-generation script
echo "Don't forget to upload the OMERO.figure PDF-generation script"