Chlorella vulgaris

xholonWorkbook.xml

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Xholon
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Title: Chlorella vulgaris
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Url: http://www.primordion.com/Xholon/gwt/
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My Notes
--------
4 August 2023

This is related to my more general workook [ref 2].
I will use some of the references from that workook.

I will use this workbook to create a running model of the Chlorella vulgaris microalga.
This will be based somewhat on my earlier Cell models.

One form of the photosynthetic refaction is written as:
light + 3CO2 + 6H2O -> C3H6O2 + 3O2 + 3H2O

### References

(1) https://hal.science/hal-02064882/file/Safi_23269.pdf
    - I am taking the structure of Chlorella vulgaris from this review paper
    - Fig 1 diagram

(2) https://gist.github.com/kenwebb/13fb1be7346ebd423ede0719d2cf8bce
  ) https://www.primordion.com/Xholon/gwt/wb/editwb.html?app=Algae+-+Carbon+Capture%2C+Biofuel%2C+etc.&src=lstr

]]></Notes>  

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  <AlgaSystem/>
  
  <!-- some of these class names are already used in my earlier Cell models
       see: ~/gwtspace/Xholon/Xholon/src/org/primordion/cellontro
  -->
  
  <Chlorella> <!-- genus -->
    <ChlorellaVulgaris/> <!-- species -->
  </Chlorella>
  
  <CellWall/>
  
  <Cytoplasm/>
  
  <Mitochondrion/>
  <LipidDroplet/>
  <GolgiBody/>
  <Vacuole/>
  <Nucleus/>
  
  <CloroplastEnvelope/>
  
  <Cloroplast/>
  <ChloroplyllAndCarotenoids/>
  <Starch/>
  <Pyrenoid/>
  <Thylakoid/>
  
  <!-- atoms, molecules, light, etc. -->
  <CarbonDioxide/> <!-- CO2 -->
  <Oxygen/> <!-- O2 -->
  <Water/> <!-- H2O -->
  <Photon/> <!-- light from the Sun -->
  <TriosePhosphate/> <!-- immediate product of the Calvin Cycle (photosynthesis) -->
  <Sucrose/> <!-- final product of the Calvin Cycle -->
  
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  <Chameleon><Color>white</Color></Chameleon>
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  <Cytoplasm><Color>lightgreen</Color></Cytoplasm>
  <Mitochondrion><Color>grey</Color></Mitochondrion>
  <Nucleus><Color>blue</Color></Nucleus>
  <LipidDroplet><Color>yellow</Color></LipidDroplet>
  <GolgiBody><Color>purple</Color></GolgiBody>
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  <Thylakoid><Color>green</Color></Thylakoid>
  <Starch><Color>white</Color></Starch>
  <Pyrenoid><Color>red</Color></Pyrenoid>
  
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<AlgaSystem>
  
  <ChlorellaVulgaris>
    <CellWall>
      <Cytoplasm>
        <Mitochondrion multiplicity="2"/>
        <LipidDroplet multiplicity="3"/>
        <GolgiBody/>
        <Vacuole/>
        <Nucleus/>
        <CloroplastEnvelope>
          <Cloroplast/>
          <ChloroplyllAndCarotenoids multiplicity="2"/> <!-- what is this as opposed to Thylakoid ? -->
          <Starch multiplicity="4"/>
          <Pyrenoid/>
          <Thylakoid multiplicity="2"/>
        </CloroplastEnvelope>
      </Cytoplasm>
    </CellWall>
  </ChlorellaVulgaris>
  
</AlgaSystem>

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      <title>Cell Wall</title>
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