Created
April 8, 2020 14:12
-
-
Save kescobo/4619ba516c76fa9b36a2c74d9ff7e261 to your computer and use it in GitHub Desktop.
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Requirement already satisfied: chardet<3.1.0,>=3.0.2 in /home/vklepacc/.local/lib/python3.6/site-packages (from requests->MetaPhlAn==3.0) (3.0.4) | |
| Requirement already satisfied: idna<2.8,>=2.5 in /home/vklepacc/.local/lib/python3.6/site-packages (from requests->MetaPhlAn==3.0) (2.7) | |
| Requirement already satisfied: setuptools in /home/vklepacc/miniconda3/envs/metaphlan3/lib/python3.6/site-packages (from dendropy->MetaPhlAn==3.0) (46.1.3.post20200330) | |
| Collecting bcbio-gff | |
| Downloading bcbio-gff-0.6.6.tar.gz (19 kB) | |
| Collecting matplotlib | |
| Downloading matplotlib-3.2.1-cp36-cp36m-manylinux1_x86_64.whl (12.4 MB) | |
| |████████████████████████████████| 12.4 MB 51.5 MB/s | |
| Collecting seaborn | |
| Downloading seaborn-0.10.0-py3-none-any.whl (215 kB) | |
| |████████████████████████████████| 215 kB 53.9 MB/s | |
| Collecting kiwisolver>=1.0.1 | |
| Downloading kiwisolver-1.2.0-cp36-cp36m-manylinux1_x86_64.whl (88 kB) | |
| |████████████████████████████████| 88 kB 9.2 MB/s | |
| Collecting cycler>=0.10 | |
| Using cached cycler-0.10.0-py2.py3-none-any.whl (6.5 kB) | |
| Collecting pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.1 | |
| Downloading pyparsing-2.4.7-py2.py3-none-any.whl (67 kB) | |
| |████████████████████████████████| 67 kB 1.0 MB/s | |
| Building wheels for collected packages: MetaPhlAn, biom-format, dendropy, cmseq, phylophlan, future, bcbio-gff | |
| Building wheel for MetaPhlAn (setup.py) ... done | |
| Created wheel for MetaPhlAn: filename=MetaPhlAn-3.0-py3-none-any.whl size=59410 sha256=dea95e99d18a0ac3a28e6d38c30cbe9bca10f919a003d1be9e6e4ef9881515f9 | |
| Stored in directory: /home/vklepacc/.cache/pip/wheels/75/4a/70/f7120a3f50dc4def4a384ecb8ebf1da8eec8e635774c5dfe8c | |
| Building wheel for biom-format (PEP 517) ... error | |
| ERROR: Command errored out with exit status 1: | |
| command: /home/vklepacc/miniconda3/envs/metaphlan3/bin/python /home/vklepacc/miniconda3/envs/metaphlan3/lib/python3.6/site-packages/pip/_vendor/pep517/_in_process.py build_wheel /tmp/tmp5jztle1z | |
| cwd: /tmp/pip-install-emagscjb/biom-format | |
| Complete output (185 lines): | |
| running bdist_wheel | |
| running build | |
| running build_py | |
| creating build | |
| creating build/lib.linux-x86_64-3.6 | |
| creating build/lib.linux-x86_64-3.6/biom | |
| copying biom/__init__.py -> build/lib.linux-x86_64-3.6/biom | |
| copying biom/util.py -> build/lib.linux-x86_64-3.6/biom | |
| copying biom/exception.py -> build/lib.linux-x86_64-3.6/biom | |
| copying biom/err.py -> build/lib.linux-x86_64-3.6/biom | |
| copying biom/table.py -> build/lib.linux-x86_64-3.6/biom | |
| copying biom/parse.py -> build/lib.linux-x86_64-3.6/biom | |
| creating build/lib.linux-x86_64-3.6/biom/tests | |
| copying biom/tests/__init__.py -> build/lib.linux-x86_64-3.6/biom/tests | |
| copying biom/tests/test_util.py -> build/lib.linux-x86_64-3.6/biom/tests | |
| copying biom/tests/long_lines.py -> build/lib.linux-x86_64-3.6/biom/tests | |
| copying biom/tests/test_parse.py -> build/lib.linux-x86_64-3.6/biom/tests | |
| copying biom/tests/test_err.py -> build/lib.linux-x86_64-3.6/biom/tests | |
| copying biom/tests/test_table.py -> build/lib.linux-x86_64-3.6/biom/tests | |
| creating build/lib.linux-x86_64-3.6/biom/cli | |
| copying biom/cli/table_normalizer.py -> build/lib.linux-x86_64-3.6/biom/cli | |
| copying biom/cli/__init__.py -> build/lib.linux-x86_64-3.6/biom/cli | |
| copying biom/cli/util.py -> build/lib.linux-x86_64-3.6/biom/cli | |
| copying biom/cli/metadata_exporter.py -> build/lib.linux-x86_64-3.6/biom/cli | |
| copying biom/cli/installation_informer.py -> build/lib.linux-x86_64-3.6/biom/cli | |
| copying biom/cli/table_summarizer.py -> build/lib.linux-x86_64-3.6/biom/cli | |
| copying biom/cli/table_converter.py -> build/lib.linux-x86_64-3.6/biom/cli | |
| copying biom/cli/metadata_adder.py -> build/lib.linux-x86_64-3.6/biom/cli | |
| copying biom/cli/table_subsetter.py -> build/lib.linux-x86_64-3.6/biom/cli | |
| copying biom/cli/table_head.py -> build/lib.linux-x86_64-3.6/biom/cli | |
| copying biom/cli/table_ids.py -> build/lib.linux-x86_64-3.6/biom/cli | |
| copying biom/cli/uc_processor.py -> build/lib.linux-x86_64-3.6/biom/cli | |
| copying biom/cli/table_validator.py -> build/lib.linux-x86_64-3.6/biom/cli | |
| creating build/lib.linux-x86_64-3.6/biom/tests/test_cli | |
| copying biom/tests/test_cli/test_add_metadata.py -> build/lib.linux-x86_64-3.6/biom/tests/test_cli | |
| copying biom/tests/test_cli/__init__.py -> build/lib.linux-x86_64-3.6/biom/tests/test_cli | |
| copying biom/tests/test_cli/test_summarize_table.py -> build/lib.linux-x86_64-3.6/biom/tests/test_cli | |
| copying biom/tests/test_cli/test_show_install_info.py -> build/lib.linux-x86_64-3.6/biom/tests/test_cli | |
| copying biom/tests/test_cli/test_validate_table.py -> build/lib.linux-x86_64-3.6/biom/tests/test_cli | |
| copying biom/tests/test_cli/test_uc_processor.py -> build/lib.linux-x86_64-3.6/biom/tests/test_cli | |
| copying biom/tests/test_cli/test_table_normalizer.py -> build/lib.linux-x86_64-3.6/biom/tests/test_cli | |
| copying biom/tests/test_cli/test_table_converter.py -> build/lib.linux-x86_64-3.6/biom/tests/test_cli | |
| copying biom/tests/test_cli/test_subset_table.py -> build/lib.linux-x86_64-3.6/biom/tests/test_cli | |
| creating build/lib.linux-x86_64-3.6/biom/tests/test_data | |
| copying biom/tests/test_data/__init__.py -> build/lib.linux-x86_64-3.6/biom/tests/test_data | |
| running egg_info | |
| writing biom_format.egg-info/PKG-INFO | |
| writing dependency_links to biom_format.egg-info/dependency_links.txt | |
| writing entry points to biom_format.egg-info/entry_points.txt | |
| writing requirements to biom_format.egg-info/requires.txt | |
| writing top-level names to biom_format.egg-info/top_level.txt | |
| reading manifest file 'biom_format.egg-info/SOURCES.txt' | |
| reading manifest template 'MANIFEST.in' | |
| /tmp/pip-build-env-3hdcxvb_/overlay/lib/python3.6/site-packages/setuptools/dist.py:454: UserWarning: Normalizing '2.1.8-dev' to '2.1.8.dev0' | |
| warnings.warn(tmpl.format(**locals())) | |
| warning: no directories found matching 'support_files' | |
| warning: no directories found matching 'tests/test_data' | |
| no previously-included directories found matching 'docs/_build' | |
| warning: no previously-included files matching '*.pyc' found anywhere in distribution | |
| warning: no previously-included files matching '*.pyo' found anywhere in distribution | |
| warning: no previously-included files matching '.git' found anywhere in distribution | |
| warning: no previously-included files matching '*.so' found anywhere in distribution | |
| warning: no previously-included files matching '.*.swp' found anywhere in distribution | |
| writing manifest file 'biom_format.egg-info/SOURCES.txt' | |
| copying biom/_filter.pyx -> build/lib.linux-x86_64-3.6/biom | |
| copying biom/_subsample.pyx -> build/lib.linux-x86_64-3.6/biom | |
| copying biom/_transform.pyx -> build/lib.linux-x86_64-3.6/biom | |
| creating build/lib.linux-x86_64-3.6/biom/assets | |
| copying biom/assets/exercise_api.py -> build/lib.linux-x86_64-3.6/biom/assets | |
| copying biom/assets/exercise_cli.sh -> build/lib.linux-x86_64-3.6/biom/assets | |
| creating build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/10000x10000x0.001_bench.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/10000x10000x0.001_bench_hdf5.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/10000x10000x0.010_bench.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/10000x10000x0.010_bench_hdf5.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/10000x10000x0.100_bench.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/10000x10000x0.100_bench_hdf5.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/10000x1000x0.001_bench.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/10000x1000x0.001_bench_hdf5.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/10000x1000x0.010_bench.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/10000x1000x0.010_bench_hdf5.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/10000x1000x0.100_bench.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/10000x1000x0.100_bench_hdf5.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/10000x100x0.001_bench.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/10000x100x0.001_bench_hdf5.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/10000x100x0.010_bench.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/10000x100x0.010_bench_hdf5.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/10000x100x0.100_bench.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/10000x100x0.100_bench_hdf5.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/10000x10x0.001_bench.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/10000x10x0.001_bench_hdf5.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/10000x10x0.010_bench.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/10000x10x0.010_bench_hdf5.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/10000x10x0.100_bench.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/10000x10x0.100_bench_hdf5.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/1000x10000x0.001_bench.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/1000x10000x0.001_bench_hdf5.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/1000x10000x0.010_bench.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/1000x10000x0.010_bench_hdf5.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/1000x10000x0.100_bench.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/1000x10000x0.100_bench_hdf5.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/1000x1000x0.001_bench.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/1000x1000x0.001_bench_hdf5.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/1000x1000x0.010_bench.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/1000x1000x0.010_bench_hdf5.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/1000x1000x0.100_bench.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/1000x1000x0.100_bench_hdf5.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/1000x100x0.001_bench.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/1000x100x0.001_bench_hdf5.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/1000x100x0.010_bench.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/1000x100x0.010_bench_hdf5.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/1000x100x0.100_bench.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/1000x100x0.100_bench_hdf5.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/1000x10x0.001_bench.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/1000x10x0.001_bench_hdf5.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/1000x10x0.010_bench.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/1000x10x0.010_bench_hdf5.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/1000x10x0.100_bench.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/1000x10x0.100_bench_hdf5.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/100x10000x0.001_bench.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/100x10000x0.001_bench_hdf5.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/100x10000x0.010_bench.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/100x10000x0.010_bench_hdf5.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/100x10000x0.100_bench.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/100x10000x0.100_bench_hdf5.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/100x1000x0.001_bench.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/100x1000x0.001_bench_hdf5.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/100x1000x0.010_bench.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/100x1000x0.010_bench_hdf5.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/100x1000x0.100_bench.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/100x1000x0.100_bench_hdf5.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/100x100x0.001_bench.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/100x100x0.001_bench_hdf5.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/100x100x0.010_bench.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/100x100x0.010_bench_hdf5.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/100x100x0.100_bench.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/100x100x0.100_bench_hdf5.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/100x10x0.001_bench.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/100x10x0.001_bench_hdf5.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/100x10x0.010_bench.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/100x10x0.010_bench_hdf5.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/100x10x0.100_bench.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/100x10x0.100_bench_hdf5.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/10x10000x0.001_bench.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/10x10000x0.001_bench_hdf5.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/10x10000x0.010_bench.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/10x10000x0.010_bench_hdf5.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/10x10000x0.100_bench.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/10x10000x0.100_bench_hdf5.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/10x1000x0.001_bench.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/10x1000x0.001_bench_hdf5.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/10x1000x0.010_bench.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/10x1000x0.010_bench_hdf5.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/10x1000x0.100_bench.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/10x1000x0.100_bench_hdf5.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/10x100x0.001_bench.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/10x100x0.001_bench_hdf5.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/10x100x0.010_bench.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/10x100x0.010_bench_hdf5.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/10x100x0.100_bench.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/10x100x0.100_bench_hdf5.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/10x10x0.001_bench.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/10x10x0.001_bench_hdf5.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/10x10x0.010_bench.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/10x10x0.010_bench_hdf5.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/10x10x0.100_bench.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| copying biom/tests/bench_tables/10x10x0.100_bench_hdf5.biom.gz -> build/lib.linux-x86_64-3.6/biom/tests/bench_tables | |
| creating build/lib.linux-x86_64-3.6/biom/tests/test_cli/test_data | |
| copying biom/tests/test_cli/test_data/json_obs_collapsed.biom -> build/lib.linux-x86_64-3.6/biom/tests/test_cli/test_data | |
| copying biom/tests/test_cli/test_data/json_sample_collapsed.biom -> build/lib.linux-x86_64-3.6/biom/tests/test_cli/test_data | |
| copying biom/tests/test_cli/test_data/test.biom -> build/lib.linux-x86_64-3.6/biom/tests/test_cli/test_data | |
| copying biom/tests/test_cli/test_data/test.json -> build/lib.linux-x86_64-3.6/biom/tests/test_cli/test_data | |
| copying biom/tests/test_data/bad_table.txt -> build/lib.linux-x86_64-3.6/biom/tests/test_data | |
| copying biom/tests/test_data/bad_table.txt.gz -> build/lib.linux-x86_64-3.6/biom/tests/test_data | |
| copying biom/tests/test_data/empty.biom -> build/lib.linux-x86_64-3.6/biom/tests/test_data | |
| copying biom/tests/test_data/no-contents.biom -> build/lib.linux-x86_64-3.6/biom/tests/test_data | |
| copying biom/tests/test_data/test.biom -> build/lib.linux-x86_64-3.6/biom/tests/test_data | |
| copying biom/tests/test_data/test.json -> build/lib.linux-x86_64-3.6/biom/tests/test_data | |
| copying biom/tests/test_data/test.json.gz -> build/lib.linux-x86_64-3.6/biom/tests/test_data | |
| running build_ext | |
| building 'biom._filter' extension | |
| creating build/temp.linux-x86_64-3.6 | |
| creating build/temp.linux-x86_64-3.6/biom | |
| /home/vklepacc/miniconda3/bin/x86_64-conda_cos6-linux-gnu-cc -DNDEBUG -fwrapv -O2 -Wall -Wstrict-prototypes -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -fPIC -I/tmp/pip-build-env-3hdcxvb_/overlay/lib/python3.6/site-packages/numpy/core/include -I/tmp/pip-build-env-3hdcxvb_/overlay/lib/python3.6/site-packages/numpy/core/include -I/home/vklepacc/miniconda3/envs/metaphlan3/include/python3.6m -c biom/_filter.c -o build/temp.linux-x86_64-3.6/biom/_filter.o | |
| error: command '/home/vklepacc/miniconda3/bin/x86_64-conda_cos6-linux-gnu-cc' failed with exit status 1 | |
| ---------------------------------------- | |
| ERROR: Failed building wheel for biom-format | |
| Building wheel for dendropy (setup.py) ... done | |
| Created wheel for dendropy: filename=DendroPy-4.4.0-py3-none-any.whl size=442139 sha256=93d064445308462f97ee8df2d770e90b159655bc559805daf0c776a5cbd1469e | |
| Stored in directory: /home/vklepacc/.cache/pip/wheels/d3/9f/7f/1141505dc5b872332224ae4f816c3614b259babaf651616cc7 | |
| Building wheel for cmseq (setup.py) ... done | |
| Created wheel for cmseq: filename=CMSeq-1.0.0-py3-none-any.whl size=19560 sha256=277d9f3879fff3867a18df59fee3e7b032ad2f0e74cc7d4ad1caaeda2a52274d | |
| Stored in directory: /tmp/pip-ephem-wheel-cache-wo4ugd7u/wheels/b8/b0/b6/f899df621366df71c124edc0366d6f9ab934e597232d0ed674 | |
| Building wheel for phylophlan (setup.py) ... done | |
| Created wheel for phylophlan: filename=PhyloPhlAn-3.0-py3-none-any.whl size=89064 sha256=5dbc067f672d35395d4ef0eeec8f411a9de8e0d375a070b1e168ec36e03c3dee | |
| Stored in directory: /tmp/pip-ephem-wheel-cache-wo4ugd7u/wheels/d2/dd/f8/a08a741bbaf523ccdf0ee01b863d2d792526712e07540ed0f8 | |
| Building wheel for future (setup.py) ... done | |
| Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491058 sha256=900c4340e7e3aeb15749ae153281d6bce4f90a414301d5c607deea66a397e0a5 | |
| Stored in directory: /home/vklepacc/.cache/pip/wheels/6e/9c/ed/4499c9865ac1002697793e0ae05ba6be33553d098f3347fb94 | |
| Building wheel for bcbio-gff (setup.py) ... done | |
| Created wheel for bcbio-gff: filename=bcbio_gff-0.6.6-py3-none-any.whl size=15455 sha256=add71c4975674fa6e0e18071c2e69f52d1675ededce2c1a60fa61ecb7a789873 | |
| Stored in directory: /home/vklepacc/.cache/pip/wheels/b8/84/1c/15f322d4addcb4878db5f6a968348cf7b60c717b3ca70a4cfd | |
| Successfully built MetaPhlAn dendropy cmseq phylophlan future bcbio-gff | |
| Failed to build biom-format | |
| ERROR: Could not build wheels for biom-format which use PEP 517 and cannot be installed directly |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment