bioconda-condaforge-duplicates.md

List of packages from Bioconda

git clone https://github.com/bioconda/bioconda-recipes.git
cd bioconda-recipes/recipes/
ls > ~/bioconda.pkglist

List of packages from Conda-forge

git clone https://github.com/conda-forge/feedstocks.git
cd feedstocks/feedstocks/
ls > ~/condaforge.pkglist

Search for duplicates

cat ~/bioconda.pkglist ~/condaforge.pkglist | sort | uniq -d

List of duplicates

Total: 105

• aniso8601
• appdirs
• argh
• argparse
• arrow
• autoconf
• awscli
• bcdoc
• blinker
• boltons
• botocore
• bottle
• brewer2mpl
• click
• curl
• cyordereddict
• deap
• dominate
• eigen
• emperor
• expat
• fftw
• filechunkio
• flask-admin
• flask-basicauth
• flask-script
• flask-sqlalchemy
• ftputil
• functools32
• gdal
• gettext
• ggplot
• glpk
• google-api-python-client
• graphviz
• grequests
• httplib2
• httpretty
• isodate
• jellyfish
• jmespath
• joblib
• jq
• keepalive
• lapack
• libffi
• libgd
• libssh2
• libsvm
• libxml2
• m4
• matplotlib-venn
• ndg-httpsclient
• netifaces
• oauth2client
• openmpi
• pathtools
• peewee
• perl
• phonenumbers
• pyaml
• pyasn1-modules
• pycodestyle
• pydoe
• pydotplus
• pyinotify
• pyomo
• pytest-cov
• pytest-mock
• pytest-mpl
• pytest-timeout
• pytest-xdist
• python-dateutil
• python-levenshtein
• pyutilib
• regex
• requests-cache
• requests-toolbelt
• retrying
• rsa
• ruamel.ordereddict
• ruamel.yaml
• scikit-allel
• scikit-bio
• sed
• setuptools_scm
• sortedcontainers
• sparsehash
• sphinx-argparse
• sqlalchemy-utils
• suds-jurko
• tabulate
• tbb
• testfixtures
• tqdm
• typing
• uritemplate
• urllib3
• validictory
• visitor
• voluptuous
• watchdog
• ws4py
• xmltodict
• yasm