keuv-grvl

#!/usr/bin/env bash

command -v inkscape >/dev/null 2>&1 || { echo >&2 "Inkscape is not installed. Aborting."; exit 1; }

# SVG files must be in "./svg/" and PNG files will be outputed in './png/'
echo "starting..."
mkdir -p ./png/
rm ./png/*png

## ./svg/ can contain links to SVG files.

keuv-grvl

#!/usr/bin/env bash

if [ "$EUID" -ne 0 ]
  then echo "Please run as root." ;
  exit 1 ;
fi

#-- little clean up ----------------------------------
apt-get -yqq autoremove software-center landscape-client-ui-install example-content rhythmbox* thunderbird* totem totem-common unity-lens-shopping unity-lens-friends unity-scope-musicstores unity-scope-video-remote ;
 

keuv-grvl

# Lines configured by zsh-newuser-install
HISTFILE=~/.histfile
HISTSIZE=100000
SAVEHIST=100000

setopt extendedglob
unsetopt autocd
bindkey -e
# End of lines configured by zsh-newuser-install
# The following lines were added by compinstall

keuv-grvl

{
	"cmd": ["pandoc --latex-engine=xelatex --filter=pandoc-citeproc -o '$file_base_name.pdf' '$file_name'"],
	"selector": "text.html.markdown",
	"shell": true
}

keuv-grvl

# usage: join_rec file1.tsv file2.tsv file3.tsv file*.tsv
# do not try to join 23k files...
function join_rec {
  f1=$1; f2=$2; 
  shift 2; 
  if [ $# -gt 0 ]; then 
    join -a1 -a2 -e 0 -o auto -t$'\t' "$f1" "$f2" | join_rec - "$@" ; 
  else 
    join -a1 -a2 -e 0 -o auto -t$'\t' "$f1" "$f2" ; 
  fi

keuv-grvl

#!/usr/bin/env bash

#-- Set some useful bash options
set -e            # this script exits on error
set -o pipefail   # a pipeline returns error code if any command fails
set -u            # unset variables as an error, and immediately exit

set -x            # print each command on STDERR before running it, useful for logging and debugging
set +x            # turn off 'set -x'

keuv-grvl

List of packages from Bioconda

git clone https://github.com/bioconda/bioconda-recipes.git
cd bioconda-recipes/recipes/
ls > ~/bioconda.pkglist

List of packages from Conda-forge

keuv-grvl

# usage: make -f maxbin.makefile

# Config
DEBUG           := 0
BUILDDIR        := build
# End config

CXX             := g++
CXXFLAGS        := -MMD -Wall -Wextra -ansi -pedantic -std=c++11
LDFLAGS         := -lpthread

keuv-grvl

# Config
DEBUG     := 0
BUILDDIR  := build
SOURCEDIR := src
PREFIX    := 
# End config

CXX       := g++
CXXFLAGS  := -fopenmp -MMD -Wall -Wextra -ansi -pedantic -std=c++11
LDFLAGS   := -lpthread -lboost_system -fopenmp -Wl,-rpath=$(PREFIX)/lib/

keuv-grvl

# generate a ggplot2 color palette
gg_color_hue <- function(n) {
  hues = seq(15, 375, length = n + 1)
  hcl(h = hues, l = 65, c = 100)[1:n]
}