pll.h patch

pll_h_patch

diff --git a/src/pll.h b/src/pll.h
index 6941efb..572179c 100644
--- a/src/pll.h
+++ b/src/pll.h
@@ -123,7 +123,7 @@ extern "C" {

 #define PLL_BADREAR                             -1

-#define PLL_NUM_BRANCHES                        50
+#define PLL_NUM_BRANCHES                        5000

 #define PLL_TRUE                                1
 #define PLL_FALSE                               0
@@ -1704,6 +1704,7 @@ extern int pllGetTransitionMatrix (pllInstance * tr, partitionList * pr, nodeptr
 extern void pllGetTransitionMatrix2 (pllInstance * tr, partitionList * pr, int model, nodeptr p, double * outBuffer);
 extern int pllGetCLV (pllInstance * tr, partitionList * pr, nodeptr p, int partition, double * outProbs);
 extern int pllTopologyPerformNNI(pllInstance * tr, nodeptr p, int swap);
+extern double pllTestNNILikelihood (pllInstance * tr, partitionList * pr, nodeptr p, int swapType);

 /* TBR moves */
 extern int pllTbrRemoveBranch(pllInstance * tr, partitionList * pr, nodeptr p);