Last active
May 20, 2024 19:19
-
-
Save kilonzi/311448cf7f0372420dbab862f66dc259 to your computer and use it in GitHub Desktop.
A complete workflow definition
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
apiVersion: sanda.broad.io/v1 | |
workflow: | |
name: updated_example_workflow | |
description: This is an example workflow | |
version: 0.1.1 | |
environment: | |
- DATABASE_URL | |
- SECRET_KEY | |
- BASE_URL | |
jobs: | |
- id: create_workspace | |
name: create_workspace | |
uses: docker.io/spitfire:latest | |
entrypoint: create-workspace | |
timeout: 10 | |
resources: | |
cpu: 1 | |
memory: 1Gi | |
needs: [ ] | |
environment: | |
- DATABASE_URL | |
- SECRET_KEY | |
- FIRECLOUD_URL | |
inputs: | |
- name: workspace_name | |
type: str | |
default: "workspace-1" | |
outputs: | |
- name: workspace_name | |
type: str | |
- name: extract_data_from_single_cell_portal | |
image: ubuntu:latest | |
entrypoint: extract_data | |
needs: [ create_workspace ] | |
inputs: | |
- name: workspace_name | |
type: str | |
value: create_workspace.workspace_name | |
retries: 3, | |
outputs: | |
- name: files | |
type: list |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment