gatk-1.2.ebuild

# Copyright 1999-2009 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: $

EAPI=4

MY_HASH=885c33a

EGIT_REPO_URI="https://github.com/broadgsa/gatk.git"

EANT_BUILD_TARGET="dist"

#WANT_ANT_TASKS="ant-junit4"
#EANT_GENTOO_CLASSPATH="colt,jdom-1.0,itext,junit-4,jebl,matrix-toolkits-java,commons-math-2,jdom-jaxen-1.0"
#JAVA_ANT_REWRITE_CLASSPATH="true"
#JAVA_ANT_ENCODING="latin1"
#JAVA_PKG_BSFIX_NAME="build.xml build_BEAST_MCMC.xml build_coalsim.xml build_development.xml build_pathogen.xml build_release.xml build_treestat.xml build_vcs.xml"

#inherit java-pkg-2 java-ant-2 eutils git

inherit java-pkg-2 java-ant-2

DESCRIPTION="The Genome Analysis Toolkit"
HOMEPAGE="http://www.broadinstitute.org/gsa/wiki/index.php/The_Genome_Analysis_Toolkit"
SRC_URI="https://github.com/broadgsa/gatk/tarball/${PV} -> ${P}.tar.gz"

LICENSE="as-is"
SLOT="0"
IUSE=""
KEYWORDS="~amd64"

COMMON_DEPS=""
DEPEND=">=virtual/jdk-1.6
        ${COMMON_DEPS}"
RDEPEND=">=virtual/jre-1.6
        ${COMMON_DEPS}"

S="${WORKDIR}/broadgsa-gatk-${MY_HASH}"