gatk-1.2.ebuild

# Copyright 1999-2009 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: $

EAPI=4

MY_HASH=885c33a

EGIT_REPO_URI="https://github.com/broadgsa/gatk.git"

EANT_BUILD_TARGET="dist"

EANT_GENTOO_CLASSPATH_EXTRA=$(java-config --tools)

JAVA_ANT_REWRITE_CLASSPATH="true"

inherit java-pkg-2 java-ant-2

DESCRIPTION="The Genome Analysis Toolkit"
HOMEPAGE="http://www.broadinstitute.org/gsa/wiki/index.php/The_Genome_Analysis_Toolkit"
SRC_URI="https://github.com/broadgsa/gatk/tarball/${PV} -> ${P}.tar.gz"

LICENSE="as-is"
SLOT="0"
IUSE=""
KEYWORDS="~amd64"

COMMON_DEPS=""
DEPEND=">=virtual/jdk-1.6                                                                                                                                                                                                              
    ${COMMON_DEPS}"
RDEPEND=">=virtual/jre-1.6                                                                                                                                                                                                             
    ${COMMON_DEPS}"

S="${WORKDIR}/broadgsa-gatk-${MY_HASH}"

src_prepare() {
    sed -i '/property name="ivy.home"/ s|${user.home}|'${WORKDIR}'|' build.xml || die
    java-pkg-2_src_prepare
}