sudo wget https://storage.googleapis.com/golang/go1.4.2.linux-amd64.tar.gz
tar -xzf go1.4.2.linux-amd64.tar.gz
export GOROOT=PATH_WHERE_YOU_EXTRACT_GO
export PATH=$PATH:$GOROOT/bin
export GOBIN=$GOROOT/bin
mkdir ~/golang/
export GOPATH=~/golang/ 
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| """Add lines to VCF header. | |
| Does not verify the format of header lines or modify the following data in any way. | |
| This is a solution for adding the PEDIGREE information for the cancer-mode of snpEff. | |
| Example: python add_to_vcf_header.py original.vcf '##PEDIGREE=<Derived=TUMOR,Original=NORMAL>' | |
| """ |
dasgoll
/ go-install.md
Created
January 20, 2018 03:27
— forked from diegopacheco/go-install.md
How to Install GO Lang on CentOS / Amazon Linux?
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| *bcftools filter | |
| *Filter variants per region (in this example, print out only variants mapped to chr1 and chr2) | |
| qbcftools filter -r1,2 ALL.chip.omni_broad_sanger_combined.20140818.snps.genotypes.hg38.vcf.gz | |
| *printing out info for only 2 samples: | |
| bcftools view -s NA20818,NA20819 filename.vcf.gz | |
| *printing stats only for variants passing the filter: | |
| bcftools view -f PASS filename.vcf.gz |
tdamsma
/ migrating-away-from-docker-desktop.md
Last active
April 30, 2024 10:17
Running VSCode remote containers on windows without docker desktop
Due to the license issues with docker desktop and the fact that you don't really need this buggy bit of software, this guide will walk you through the steps to use VSCode+remote-containers in combination with WSL2 without using docker desktop.
Only if you have docker desktop currently installed of course