Created
February 22, 2021 23:32
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bluesky-live -> databroker?
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$ python -c 'import databroker' | |
2021-02-22 15:31:02,812 - intake - ERROR - discovery.py:autodiscover:L147 - Error while loading entrypoint bluesky-event-stream | |
Traceback (most recent call last): | |
File "/reg/g/pcds/pyps/conda/py36/envs/pcds-4.0.0/lib/python3.8/site-packages/intake/source/discovery.py", line 250, in _load_entrypoint | |
return entrypoint.load() | |
File "/reg/g/pcds/pyps/conda/py36/envs/pcds-4.0.0/lib/python3.8/site-packages/entrypoints.py", line 82, in load | |
mod = import_module(self.module_name) | |
File "/reg/g/pcds/pyps/conda/py36/envs/pcds-4.0.0/lib/python3.8/importlib/__init__.py", line 127, in import_module | |
return _bootstrap._gcd_import(name[level:], package, level) | |
File "<frozen importlib._bootstrap>", line 1014, in _gcd_import | |
File "<frozen importlib._bootstrap>", line 991, in _find_and_load | |
File "<frozen importlib._bootstrap>", line 975, in _find_and_load_unlocked | |
File "<frozen importlib._bootstrap>", line 671, in _load_unlocked | |
File "<frozen importlib._bootstrap_external>", line 783, in exec_module | |
File "<frozen importlib._bootstrap>", line 219, in _call_with_frames_removed | |
File "/reg/g/pcds/pyps/conda/py36/envs/pcds-4.0.0/lib/python3.8/site-packages/databroker/core.py", line 30, in <module> | |
from bluesky_live.conversion import documents_to_xarray, documents_to_xarray_config | |
ModuleNotFoundError: No module named 'bluesky_live' | |
The above exception was the direct cause of the following exception: | |
Traceback (most recent call last): | |
File "/reg/g/pcds/pyps/conda/py36/envs/pcds-4.0.0/lib/python3.8/site-packages/intake/source/discovery.py", line 145, in autodiscover | |
drivers[entrypoint.name] = _load_entrypoint(entrypoint) | |
File "/reg/g/pcds/pyps/conda/py36/envs/pcds-4.0.0/lib/python3.8/site-packages/intake/source/discovery.py", line 252, in _load_entrypoint | |
raise ConfigurationError( | |
intake.source.discovery.ConfigurationError: Failed to load bluesky-event-stream driver because module databroker.core could not be found. | |
2021-02-22 15:31:02,816 - intake - ERROR - discovery.py:autodiscover:L147 - Error while loading entrypoint bluesky-jsonl-catalog | |
Traceback (most recent call last): | |
File "/reg/g/pcds/pyps/conda/py36/envs/pcds-4.0.0/lib/python3.8/site-packages/intake/source/discovery.py", line 250, in _load_entrypoint | |
return entrypoint.load() | |
File "/reg/g/pcds/pyps/conda/py36/envs/pcds-4.0.0/lib/python3.8/site-packages/entrypoints.py", line 82, in load | |
mod = import_module(self.module_name) | |
File "/reg/g/pcds/pyps/conda/py36/envs/pcds-4.0.0/lib/python3.8/importlib/__init__.py", line 127, in import_module | |
return _bootstrap._gcd_import(name[level:], package, level) | |
File "<frozen importlib._bootstrap>", line 1014, in _gcd_import | |
File "<frozen importlib._bootstrap>", line 991, in _find_and_load | |
File "<frozen importlib._bootstrap>", line 975, in _find_and_load_unlocked | |
File "<frozen importlib._bootstrap>", line 671, in _load_unlocked | |
File "<frozen importlib._bootstrap_external>", line 783, in exec_module | |
File "<frozen importlib._bootstrap>", line 219, in _call_with_frames_removed | |
File "/reg/g/pcds/pyps/conda/py36/envs/pcds-4.0.0/lib/python3.8/site-packages/databroker/_drivers/jsonl.py", line 8, in <module> | |
from ..in_memory import BlueskyInMemoryCatalog | |
File "/reg/g/pcds/pyps/conda/py36/envs/pcds-4.0.0/lib/python3.8/site-packages/databroker/in_memory.py", line 3, in <module> | |
from .core import Entry, retry | |
File "/reg/g/pcds/pyps/conda/py36/envs/pcds-4.0.0/lib/python3.8/site-packages/databroker/core.py", line 30, in <module> | |
from bluesky_live.conversion import documents_to_xarray, documents_to_xarray_config | |
ModuleNotFoundError: No module named 'bluesky_live' | |
The above exception was the direct cause of the following exception: | |
Traceback (most recent call last): | |
File "/reg/g/pcds/pyps/conda/py36/envs/pcds-4.0.0/lib/python3.8/site-packages/intake/source/discovery.py", line 145, in autodiscover | |
drivers[entrypoint.name] = _load_entrypoint(entrypoint) | |
File "/reg/g/pcds/pyps/conda/py36/envs/pcds-4.0.0/lib/python3.8/site-packages/intake/source/discovery.py", line 252, in _load_entrypoint | |
raise ConfigurationError( | |
intake.source.discovery.ConfigurationError: Failed to load bluesky-jsonl-catalog driver because module databroker._drivers.jsonl could not be found. | |
2021-02-22 15:31:02,894 - intake - ERROR - discovery.py:autodiscover:L147 - Error while loading entrypoint bluesky-mongo-embedded-catalog | |
Traceback (most recent call last): | |
File "/reg/g/pcds/pyps/conda/py36/envs/pcds-4.0.0/lib/python3.8/site-packages/intake/source/discovery.py", line 250, in _load_entrypoint | |
return entrypoint.load() | |
File "/reg/g/pcds/pyps/conda/py36/envs/pcds-4.0.0/lib/python3.8/site-packages/entrypoints.py", line 82, in load | |
mod = import_module(self.module_name) | |
File "/reg/g/pcds/pyps/conda/py36/envs/pcds-4.0.0/lib/python3.8/importlib/__init__.py", line 127, in import_module | |
return _bootstrap._gcd_import(name[level:], package, level) | |
File "<frozen importlib._bootstrap>", line 1014, in _gcd_import | |
File "<frozen importlib._bootstrap>", line 991, in _find_and_load | |
File "<frozen importlib._bootstrap>", line 975, in _find_and_load_unlocked | |
File "<frozen importlib._bootstrap>", line 671, in _load_unlocked | |
File "<frozen importlib._bootstrap_external>", line 783, in exec_module | |
File "<frozen importlib._bootstrap>", line 219, in _call_with_frames_removed | |
File "/reg/g/pcds/pyps/conda/py36/envs/pcds-4.0.0/lib/python3.8/site-packages/databroker/_drivers/mongo_embedded.py", line 10, in <module> | |
from ..core import Entry | |
File "/reg/g/pcds/pyps/conda/py36/envs/pcds-4.0.0/lib/python3.8/site-packages/databroker/core.py", line 30, in <module> | |
from bluesky_live.conversion import documents_to_xarray, documents_to_xarray_config | |
ModuleNotFoundError: No module named 'bluesky_live' | |
The above exception was the direct cause of the following exception: | |
Traceback (most recent call last): | |
File "/reg/g/pcds/pyps/conda/py36/envs/pcds-4.0.0/lib/python3.8/site-packages/intake/source/discovery.py", line 145, in autodiscover | |
drivers[entrypoint.name] = _load_entrypoint(entrypoint) | |
File "/reg/g/pcds/pyps/conda/py36/envs/pcds-4.0.0/lib/python3.8/site-packages/intake/source/discovery.py", line 252, in _load_entrypoint | |
raise ConfigurationError( | |
intake.source.discovery.ConfigurationError: Failed to load bluesky-mongo-embedded-catalog driver because module databroker._drivers.mongo_embedded could not be found. | |
2021-02-22 15:31:02,896 - intake - ERROR - discovery.py:autodiscover:L147 - Error while loading entrypoint bluesky-mongo-normalized-catalog | |
Traceback (most recent call last): | |
File "/reg/g/pcds/pyps/conda/py36/envs/pcds-4.0.0/lib/python3.8/site-packages/intake/source/discovery.py", line 250, in _load_entrypoint | |
return entrypoint.load() | |
File "/reg/g/pcds/pyps/conda/py36/envs/pcds-4.0.0/lib/python3.8/site-packages/entrypoints.py", line 82, in load | |
mod = import_module(self.module_name) | |
File "/reg/g/pcds/pyps/conda/py36/envs/pcds-4.0.0/lib/python3.8/importlib/__init__.py", line 127, in import_module | |
return _bootstrap._gcd_import(name[level:], package, level) | |
File "<frozen importlib._bootstrap>", line 1014, in _gcd_import | |
File "<frozen importlib._bootstrap>", line 991, in _find_and_load | |
File "<frozen importlib._bootstrap>", line 975, in _find_and_load_unlocked | |
File "<frozen importlib._bootstrap>", line 671, in _load_unlocked | |
File "<frozen importlib._bootstrap_external>", line 783, in exec_module | |
File "<frozen importlib._bootstrap>", line 219, in _call_with_frames_removed | |
File "/reg/g/pcds/pyps/conda/py36/envs/pcds-4.0.0/lib/python3.8/site-packages/databroker/_drivers/mongo_normalized.py", line 10, in <module> | |
from ..core import to_event_pages, to_datum_pages, Entry | |
File "/reg/g/pcds/pyps/conda/py36/envs/pcds-4.0.0/lib/python3.8/site-packages/databroker/core.py", line 30, in <module> | |
from bluesky_live.conversion import documents_to_xarray, documents_to_xarray_config | |
ModuleNotFoundError: No module named 'bluesky_live' | |
The above exception was the direct cause of the following exception: | |
Traceback (most recent call last): | |
File "/reg/g/pcds/pyps/conda/py36/envs/pcds-4.0.0/lib/python3.8/site-packages/intake/source/discovery.py", line 145, in autodiscover | |
drivers[entrypoint.name] = _load_entrypoint(entrypoint) | |
File "/reg/g/pcds/pyps/conda/py36/envs/pcds-4.0.0/lib/python3.8/site-packages/intake/source/discovery.py", line 252, in _load_entrypoint | |
raise ConfigurationError( | |
intake.source.discovery.ConfigurationError: Failed to load bluesky-mongo-normalized-catalog driver because module databroker._drivers.mongo_normalized could not be found. | |
2021-02-22 15:31:02,898 - intake - ERROR - discovery.py:autodiscover:L147 - Error while loading entrypoint bluesky-msgpack-catalog | |
Traceback (most recent call last): | |
File "/reg/g/pcds/pyps/conda/py36/envs/pcds-4.0.0/lib/python3.8/site-packages/intake/source/discovery.py", line 250, in _load_entrypoint | |
return entrypoint.load() | |
File "/reg/g/pcds/pyps/conda/py36/envs/pcds-4.0.0/lib/python3.8/site-packages/entrypoints.py", line 82, in load | |
mod = import_module(self.module_name) | |
File "/reg/g/pcds/pyps/conda/py36/envs/pcds-4.0.0/lib/python3.8/importlib/__init__.py", line 127, in import_module | |
return _bootstrap._gcd_import(name[level:], package, level) | |
File "<frozen importlib._bootstrap>", line 1014, in _gcd_import | |
File "<frozen importlib._bootstrap>", line 991, in _find_and_load | |
File "<frozen importlib._bootstrap>", line 975, in _find_and_load_unlocked | |
File "<frozen importlib._bootstrap>", line 671, in _load_unlocked | |
File "<frozen importlib._bootstrap_external>", line 783, in exec_module | |
File "<frozen importlib._bootstrap>", line 219, in _call_with_frames_removed | |
File "/reg/g/pcds/pyps/conda/py36/envs/pcds-4.0.0/lib/python3.8/site-packages/databroker/_drivers/msgpack.py", line 8, in <module> | |
from ..in_memory import BlueskyInMemoryCatalog | |
File "/reg/g/pcds/pyps/conda/py36/envs/pcds-4.0.0/lib/python3.8/site-packages/databroker/in_memory.py", line 3, in <module> | |
from .core import Entry, retry | |
File "/reg/g/pcds/pyps/conda/py36/envs/pcds-4.0.0/lib/python3.8/site-packages/databroker/core.py", line 30, in <module> | |
from bluesky_live.conversion import documents_to_xarray, documents_to_xarray_config | |
ModuleNotFoundError: No module named 'bluesky_live' | |
The above exception was the direct cause of the following exception: | |
Traceback (most recent call last): | |
File "/reg/g/pcds/pyps/conda/py36/envs/pcds-4.0.0/lib/python3.8/site-packages/intake/source/discovery.py", line 145, in autodiscover | |
drivers[entrypoint.name] = _load_entrypoint(entrypoint) | |
File "/reg/g/pcds/pyps/conda/py36/envs/pcds-4.0.0/lib/python3.8/site-packages/intake/source/discovery.py", line 252, in _load_entrypoint | |
raise ConfigurationError( | |
intake.source.discovery.ConfigurationError: Failed to load bluesky-msgpack-catalog driver because module databroker._drivers.msgpack could not be found. | |
2021-02-22 15:31:02,899 - intake - ERROR - discovery.py:autodiscover:L147 - Error while loading entrypoint bluesky-run | |
Traceback (most recent call last): | |
File "/reg/g/pcds/pyps/conda/py36/envs/pcds-4.0.0/lib/python3.8/site-packages/intake/source/discovery.py", line 250, in _load_entrypoint | |
return entrypoint.load() | |
File "/reg/g/pcds/pyps/conda/py36/envs/pcds-4.0.0/lib/python3.8/site-packages/entrypoints.py", line 82, in load | |
mod = import_module(self.module_name) | |
File "/reg/g/pcds/pyps/conda/py36/envs/pcds-4.0.0/lib/python3.8/importlib/__init__.py", line 127, in import_module | |
return _bootstrap._gcd_import(name[level:], package, level) | |
File "<frozen importlib._bootstrap>", line 1014, in _gcd_import | |
File "<frozen importlib._bootstrap>", line 991, in _find_and_load | |
File "<frozen importlib._bootstrap>", line 975, in _find_and_load_unlocked | |
File "<frozen importlib._bootstrap>", line 671, in _load_unlocked | |
File "<frozen importlib._bootstrap_external>", line 783, in exec_module | |
File "<frozen importlib._bootstrap>", line 219, in _call_with_frames_removed | |
File "/reg/g/pcds/pyps/conda/py36/envs/pcds-4.0.0/lib/python3.8/site-packages/databroker/core.py", line 30, in <module> | |
from bluesky_live.conversion import documents_to_xarray, documents_to_xarray_config | |
ModuleNotFoundError: No module named 'bluesky_live' | |
The above exception was the direct cause of the following exception: | |
Traceback (most recent call last): | |
File "/reg/g/pcds/pyps/conda/py36/envs/pcds-4.0.0/lib/python3.8/site-packages/intake/source/discovery.py", line 145, in autodiscover | |
drivers[entrypoint.name] = _load_entrypoint(entrypoint) | |
File "/reg/g/pcds/pyps/conda/py36/envs/pcds-4.0.0/lib/python3.8/site-packages/intake/source/discovery.py", line 252, in _load_entrypoint | |
raise ConfigurationError( | |
intake.source.discovery.ConfigurationError: Failed to load bluesky-run driver because module databroker.core could not be found. | |
Traceback (most recent call last): | |
File "<string>", line 1, in <module> | |
File "/reg/g/pcds/pyps/conda/py36/envs/pcds-4.0.0/lib/python3.8/site-packages/databroker/__init__.py", line 35, in <module> | |
from .databroker import DataBroker | |
File "/reg/g/pcds/pyps/conda/py36/envs/pcds-4.0.0/lib/python3.8/site-packages/databroker/databroker.py", line 9, in <module> | |
from ._core import Broker, lookup_config, SPECIAL_NAME | |
File "/reg/g/pcds/pyps/conda/py36/envs/pcds-4.0.0/lib/python3.8/site-packages/databroker/_core.py", line 6, in <module> | |
from pims import FramesSequence, Frame | |
File "/reg/g/pcds/pyps/conda/py36/envs/pcds-4.0.0/lib/python3.8/site-packages/pims/__init__.py", line 1, in <module> | |
from pims.api import * | |
File "/reg/g/pcds/pyps/conda/py36/envs/pcds-4.0.0/lib/python3.8/site-packages/pims/api.py", line 17, in <module> | |
from pims.image_sequence import ImageSequence, ImageSequenceND, ReaderSequence # noqa | |
File "/reg/g/pcds/pyps/conda/py36/envs/pcds-4.0.0/lib/python3.8/site-packages/pims/image_sequence.py", line 26, in <module> | |
from skimage.io import imread | |
File "/reg/g/pcds/pyps/conda/py36/envs/pcds-4.0.0/lib/python3.8/site-packages/skimage/__init__.py", line 135, in <module> | |
from .data import data_dir | |
File "/reg/g/pcds/pyps/conda/py36/envs/pcds-4.0.0/lib/python3.8/site-packages/skimage/data/__init__.py", line 270, in <module> | |
_init_pooch() | |
File "/reg/g/pcds/pyps/conda/py36/envs/pcds-4.0.0/lib/python3.8/site-packages/skimage/data/__init__.py", line 256, in _init_pooch | |
shutil.copy2(osp.join(skimage_distribution_dir, 'data', 'README.txt'), | |
File "/reg/g/pcds/pyps/conda/py36/envs/pcds-4.0.0/lib/python3.8/shutil.py", line 432, in copy2 | |
copyfile(src, dst, follow_symlinks=follow_symlinks) | |
File "/reg/g/pcds/pyps/conda/py36/envs/pcds-4.0.0/lib/python3.8/shutil.py", line 261, in copyfile | |
with open(src, 'rb') as fsrc, open(dst, 'wb') as fdst: | |
PermissionError: [Errno 13] Permission denied: '/cds/home/k/klauer/.cache/scikit-image/0.18.1/data/README.txt' |
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Nuking that cache gives: