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@kltm
kltm / gist:699d52ed48efafac917b
Created July 14, 2015 05:54
minerva error on meta response?
{
"data": {
"meta": {
"model-ids": [
"gomodel:5323da1800000002",
"gomodel:5318c42400000005",
"gomodel:5525a0fc00000061",
"gomodel
:535fe6bf00000001",
"gomodel:5525a0fc00000037",
@kltm
kltm / gist:5aecc31b0b633ef98d6a
Created August 28, 2015 22:53
download and installation of noctua from master on ubuntu in bash
sjcarbon@moiraine:/tmp$:) git clone https://github.com/geneontology/noctua.git && cd noctua/ && npm install && ./node_modules/.bin/gulp build
Cloning into 'noctua'...
remote: Counting objects: 6323, done.
remote: Compressing objects: 100% (20/20), done.
remote: Total 6323 (delta 5), reused 0 (delta 0), pack-reused 6303
Receiving objects: 100% (6323/6323), 11.21 MiB | 6.23 MiB/s, done.
Resolving deltas: 100% (3291/3291), done.
Checking connectivity... done.
npm WARN engine cors@2.4.1: wanted: {"node":">=0.10.0","npm":"^1.4"} (current: {"node":"0.12.7","npm":"2.11.3"})
npm WARN optional dep failed, continuing fsevents@0.3.8
@kltm
kltm / users.yaml
Created September 17, 2015 22:43
This is the proposed new users.yaml
-
nickname: 'Dexter Pratt'
email-md5:
- 1c98b0f0a4b0dc79242cfaaf739f9cc8
authorizations:
noctua-go:
allow-edit: true
xref: 'GOC:dp'
uri: 'GOC:dp'
organization: UCSD
@kltm
kltm / amigo-demo.js
Created March 21, 2016 17:49
Some minimal working GOlr manager code at this point in time.
///
/// Libs and config.
///
var us = require('underscore');
var bbop = require('bbop-core');
var amigo = new (require('amigo2-instance-data'))();
var golr_conf = require('golr-conf');
@kltm
kltm / hs_err_pid4936.log
Created May 19, 2017 21:53
core dump during arachene trial
#
# A fatal error has been detected by the Java Runtime Environment:
#
# SIGSEGV (0xb) at pc=0x00007f3185079d73, pid=4936, tid=0x00007f29171f3700
#
# JRE version: OpenJDK Runtime Environment (8.0_131-b11) (build 1.8.0_131-8u131-b11-0ubuntu1.16.04.2-b11)
# Java VM: OpenJDK 64-Bit Server VM (25.131-b11 mixed mode linux-amd64 )
# Problematic frame:
# C [libc.so.6+0x9ed73]
#
@kltm
kltm / almost-but-no-banana.js
Created May 26, 2017 04:51
not a generic GH integration
///
/// Grab GitHub information from the tracker for this
/// model.
///
/// This part is lifted pretty much verbatim from a
/// similar section in NoctuaLanding.js that deals with
/// the general case. As with there, library bugs mean
/// we'll hack this for the time being and revisit when we
/// switch to a new framework.
///
The 'grub-efi-amd64-signed' package failed to install into /target/. Without the GRUB boot loader, the installed system will not boot.
https://askubuntu.com/questions/789998/16-04-new-installation-gives-grub-efi-amd64-signed-failed-installation-target
Reference: http://geneontology.org/faq/how-do-i-submit-annotations-go
URL: http://geneontology.org/contribute-annotations
Reference: http://geneontology.org/faq/what-status-go-mysql-database
URL: http://geneontology.org/page/go-database
Original: http://geneontology.org/page/lead-database-schema
Reference: http://geneontology.org/page/go-mysql-database-schema
URL: http://geneontology.org/page/lead-database
Original: http://geneontology.org
Reference: http://geneontology.org/
URL: http://geneontology.org/page/go-annotations
Original: http://geneontology.org
Reference: http://geneontology.org/
URL: http://geneontology.org/page/go-enrichment-analysis
Original: http://geneontology.org
Reference: http://geneontology.org/
@kltm
kltm / gist:b5f88646fa55ade279da20a32d69041e
Created March 1, 2018 18:37
npm run build error for SAE
bbop@wok:/tmp/simple-annoton-editor$ npm run build
> simple-annoton-editor@0.1.1 build /tmp/simple-annoton-editor
> npm run clean && BUILD=production node_modules/.bin/webpack --bail
> simple-annoton-editor@0.1.1 clean /tmp/simple-annoton-editor
> rm -rf workbenches/simple-annoton-editor/public
production true