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2022-07-19 15:49:08,650 ERROR (org.geneontology.minerva.cli.CommandLineInterface:470) Attempted to load gocam ttl file into database but gocam with that iri already exists, skipping /home/bbop/local/src/git/noctua-models/models/DETOX1-PWY-DETOX1-PWY.ttl http://model.geneontology.org/DETOX1-PWY | |
2022-07-19 15:50:59,703 ERROR (org.geneontology.minerva.cli.CommandLineInterface:470) Attempted to load gocam ttl file into database but gocam with that iri already exists, skipping /home/bbop/local/src/git/noctua-models/models/PWY-821-1.ttl http://model.geneontology.org/PWY-821-1 | |
2022-07-19 15:51:59,757 ERROR (org.geneontology.minerva.cli.CommandLineInterface:470) Attempted to load gocam ttl file into database but gocam with that iri already exists, skipping /home/bbop/local/src/git/noctua-models/models/P4-PWY-1-P4-PWY-1.ttl http://model.geneontology.org/P4-PWY-1 | |
2022-07-19 15:52:34,584 ERROR (org.geneontology.minerva.cli.CommandLineInterface:470) Attempted to load gocam ttl file into database but gocam with that iri a |
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Table of contents | |
Report (original) | |
Predictions (original) | |
Predictions (experimental) (original) | |
Report | |
Group: goa - Dataset: goa_human_complex | |
SUMMARY |
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> CHEBI:18356 | |
> CHEBI:18357 | |
3817a2609,2610 | |
> CHEBI:18360 | |
> CHEBI:18362 | |
3820a2614,2615 | |
> CHEBI:18367 | |
> CHEBI:18368 | |
3821a2617,2622 | |
> CHEBI:18371 |
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PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | |
PREFIX pr: <http://purl.org/ontology/prv/core#> | |
PREFIX metago: <http://model.geneontology.org/> | |
PREFIX dc: <http://purl.org/dc/elements/1.1/> | |
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> | |
PREFIX obo: <http://www.geneontology.org/formats/oboInOwl#> | |
PREFIX owl: <http://www.w3.org/2002/07/owl#> | |
PREFIX providedBy: <http://purl.org/pav/providedBy> | |
PREFIX MF: <http://purl.obolibrary.org/obo/GO_0003674> | |
PREFIX causally_upstream_of_or_within: <http://purl.obolibrary.org/obo/RO_0002418> |
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(env) sjcarbon@moiraine:~/local/src/git/ontobio[gpad_differ]$:( python3 ontobio/io/differ.py --file1 /tmp/noctua_mgi-src.gpad --file2 /tmp/noctua_mgi-src.gpad --output /tmp/test.b.out --group_by_column DB_Object_ID --group_by_column Evidence_type | |
/home/sjcarbon/local/src/git/ontobio/env/lib/python3.7/site-packages/rdflib_jsonld/__init__.py:12: DeprecationWarning: The rdflib-jsonld package has been integrated into rdflib as of rdflib==6.0.1. Please remove rdflib-jsonld from your project's dependencies. | |
DeprecationWarning, | |
Traceback (most recent call last): | |
File "ontobio/io/differ.py", line 354, in <module> | |
compare_files() | |
File "/home/sjcarbon/local/src/git/ontobio/env/lib/python3.7/site-packages/click/core.py", line 1128, in __call__ | |
return self.main(*args, **kwargs) | |
File "/home/sjcarbon/local/src/git/ontobio/env/lib/python3.7/site-packages/click/core.py", line 1053, in main | |
rv = self.invoke(ctx) |
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17:12:06 /usr/local/lib/python3.6/dist-packages/rdflib_jsonld/__init__.py:12: DeprecationWarning: The rdflib-jsonld package has been integrated into rdflib as of rdflib==6.0.1. Please remove rdflib-jsonld from your project's dependencies. | |
17:12:06 DeprecationWarning, | |
17:12:07 /usr/local/lib/python3.6/dist-packages/rdflib_jsonld/__init__.py:12: DeprecationWarning: The rdflib-jsonld package has been integrated into rdflib as of rdflib==6.0.1. Please remove rdflib-jsonld from your project's dependencies. | |
17:12:07 DeprecationWarning, | |
17:12:07 Traceback (most recent call last): | |
17:12:07 File "/usr/local/bin/validate.py", line 32, in <module> | |
17:12:07 from ontobio.rdfgen.gocamgen.gocam_builder import GoCamBuilder, AssocExtractor | |
17:12:07 File "/usr/local/lib/python3.6/dist-packages/ontobio/rdfgen/gocamgen/gocam_builder.py", line 1, in <module> | |
17:12:07 from ontobio.rdfgen.gocamgen.gocamgen import AssocGoCamModel | |
17:12:07 File "/usr/local/lib/python3.6/dist-packages/ontobio/rdfgen/gocam |
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COB 185 | |
COB 184 | |
COB 182 | |
COB 181 | |
COB 176 | |
COB 174 | |
COB 169 | |
COB 168 | |
COB 163 | |
COB 161 |
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25 Author: abessiari <aessiari@lbl.gov> | |
2 Author: adrien-barton <adrien-barton@users.noreply.github.com> | |
3 Author: aellenhicks <aellenhicks@gmail.com> | |
18 Author: alanruttenberg <alanruttenberg@gmail.com> | |
54 Author: Alan Ruttenberg <alanruttenberg@gmail.com> | |
7 Author: Alejandra Gonzalez-Beltran <alejandra.gonzalez.beltran@gmail.com> | |
2 Author: Allyson Lister <allyson.lister@oerc.ox.ac.uk> | |
5 Author: Andrew Su <andrew.su@gmail.com> | |
38 Author: Apurva Mody <28663318+apmody@users.noreply.github.com> | |
3 Author: Asiyah Yu Lin <linikujp@gmail.com> |
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id: SGD:S000002429 | |
id: SGD:S000028797 | |
id: SGD:S000000878 | |
id: SGD:S000001420 | |
id: SGD:S000003566 | |
id: SGD:S000000138 | |
id: SGD:S000000021 | |
id: SGD:S000000499 | |
id: SGD:S000000500 | |
id: SGD:S000000139 |
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models/-1022290586.ttl | |
models/6074794600000000.ttl | |
models/6074794600000004.ttl | |
models/ACETATEUTIL2-PWY.ttl | |
models/AERO-GLYCEROL-CAT-PWY.ttl | |
models/ALANINE-DEG3-PWY.ttl | |
models/ALANINE-SYN2-PWY.ttl | |
models/ALL-CHORISMATE-PWY-1.ttl | |
models/ALLANTOINDEG-PWY.ttl | |
models/ARG-PRO-PWY.ttl |
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