| Label | Color | Hex | Description |
|---|---|---|---|
| priority:high |  |
#ee0701 |
High priority |
| priority:medium |  |
#ff5f1f |
Medium priority |
| priority:low |  |
#fbca04 |
Low priority |
| enhancement |  |
#00FF7F |
New feature or request |
| requirement |  |
#DC143C |
Required |
| bug |  |
#FF0000 |
Something isn't working |
| documentation |  |
#DEB887 |
Changes to documentation only |
| technical debt |  |
#6495ED |
A feature/requirement implemented in a sub-optimal way & must be re-written. Contrast to "cleanup" |
Kori Kuzma korikuzma
korikuzma
/ gist:50fdb30967882d33dfce8caa03ec26d1
Created
June 26, 2024 17:40
Example of oncogenicitySubmission where citation fails validation when including db/id/url all in one record (excluded other fields for brevity)
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| { | |
| "assertionCriteria": { | |
| "db": "PubMed", | |
| "id": "36063163" | |
| }, | |
| "oncogenicitySubmission": [ | |
| { | |
| "oncogenicityClassification": { | |
| "citation": [ | |
| { |
korikuzma
/ gist:d90bf9f48936efda0ad6e72f3639581e
Last active
June 26, 2024 17:39
Example of oncogenicitySubmission where citation gives error when including only url (excluded other fields for brevity). In this example, it can be processed by ClinVar but errors out.
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| { | |
| "assertionCriteria": { | |
| "db": "PubMed", | |
| "id": "36063163" | |
| }, | |
| "oncogenicitySubmission": [ | |
| { | |
| "oncogenicityClassification": { | |
| "citation": [ | |
| { |
korikuzma
/ gist:4385ef29ef76b956c73bdf84f922f5ad
Last active
June 26, 2024 17:47
Example of oncogenicitySubmission where citation gives error when including both db/id and url records (excluded other fields for brevity). In this example, it can be processed by ClinVar but errors out.
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| { | |
| "assertionCriteria": { | |
| "db": "PubMed", | |
| "id": "36063163" | |
| }, | |
| "oncogenicitySubmission": [ | |
| { | |
| "citation": [ | |
| { | |
| "db": "PubMed", |
korikuzma
/ hackathon_responses.ipynb
Last active
June 16, 2023 13:19
Biocommons Hackathon 2023 Ranked Choice Results
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
korikuzma
/ github_labels.md
Created
April 13, 2023 16:58
korikuzma
/ unable_to_normalize_cancer_hotspots_v2
Created
December 24, 2021 13:51
Terms variation-normalizer is unable to normalize in cancer hotspots v2
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| TP53 spliceX187_splicesplice | |
| TP53 spliceX307_splicesplice | |
| MYD88 L265P | |
| TP53 spliceX126_splicesplice | |
| B2M M1R | |
| MET spliceX1010_splicesplice | |
| CDK4 R24L | |
| TP53 spliceX261_splicesplice | |
| TP53 spliceX331_splicesplice | |
| HIST1H3B K28M |