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Created August 23, 2016 03:54
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GSoC Final Evaluation 2016 for project "Interactive visualisation framework for genome mutations in gene and protein networks"
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2016_GSoC_Final_Evaluation.md

Work Product

Code written for project is available in repository on github: /reimandlab/Visualisation-Framework-for-Genome-Mutations.

For the day of writing evaluation I am the only author of code availalbe in the repository; as there might be other contributors in future: all commits prior to Aug 24, 2016 available here: /reimandlab/Visualisation-Framework-for-Genome-Mutations/commits/master?author=krassowski are my GSoC 2016 commits.

Collecting data was not the part of my work during GSoC 2016 - the data for application was provided by my Mentor and hence I mark explicitly that the content of the website/data directory is not part of my GSoC work (moreover it is not even code).

Deployment & reuse

Instructions of deployment are available on main page of in repository on github.

Achived goals

  • created 'needleplot' (mutations) visualisation tool
  • created 'network' (interactions) visualisation tool
  • created database schema and SQLAlchemy models for all used data
  • created import scripts for biological data
  • created very very simple Content Managment System

What else is left to do?

All unfinished features are listed as issues on github page (thanks to my Mentor), with highlights (in my opinion) beeing:

  • Tutorial about extending database with new types of data
  • The REST API for data retrival is to be implemented
  • There are several visualisation-related and GUI tweaks to be applied to website's interface
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