|
travis_fold:start:step_start_instance |
|
[0K[33;1mStarting instance[0m |
|
✓ selected image "travis-ci-garnet-trusty-1503972833" |
|
✓ rendered startup script |
|
✓ inserted instance |
|
• sleeping 5s before checking instance insert |
|
• polling for instance insert completion... |
|
✓ instance is ready (6.53s) |
|
travis_fold:end:step_start_instance |
|
[0Ktravis_fold:start:step_upload_script |
|
[0K[33;1mUploading script[0m |
|
• waiting for ssh connectivity.............. |
|
✓ ssh connectivity established (31.65s) |
|
✓ uploaded script |
|
travis_fold:end:step_upload_script |
|
[0Ktravis_fold:start:worker_info |
|
[0K[33;1mWorker information[0m |
|
hostname: 06905234-2d79-4265-9b56-f42a8e2077a0@1.production-4-worker-org-f-2-gce |
|
version: v4.0.0 https://github.com/travis-ci/worker/tree/e5cb567e10c0eefe380e81c9a2229ac8fb6a16ce |
|
instance: travis-job-16ef79d6-1857-4f7d-8e34-f81e13b933dc travis-ci-garnet-trusty-1503972833 (via amqp) |
|
startup: 6.530903424s |
|
travis_fold:end:worker_info |
|
[0Ktravis_fold:start:system_info |
|
[0K[33;1mBuild system information[0m |
|
Build language: scala |
|
Build group: deprecated-2017Q4 |
|
Build dist: trusty |
|
Build id: 414767656 |
|
Job id: 414767660 |
|
Runtime kernel version: 4.4.0-93-generic |
|
travis-build version: afa768cd5 |
|
[34m[1mBuild image provisioning date and time[0m |
|
Tue Aug 29 02:48:34 UTC 2017 |
|
[34m[1mOperating System Details[0m |
|
Distributor ID: Ubuntu |
|
Description: Ubuntu 14.04.5 LTS |
|
Release: 14.04 |
|
Codename: trusty |
|
[34m[1mCookbooks Version[0m |
|
4642454 https://github.com/travis-ci/travis-cookbooks/tree/4642454 |
|
[34m[1mgit version[0m |
|
git version 2.14.1 |
|
[34m[1mbash version[0m |
|
GNU bash, version 4.3.11(1)-release (x86_64-pc-linux-gnu) |
|
[34m[1mgcc version[0m |
|
gcc (Ubuntu 4.8.4-2ubuntu1~14.04.3) 4.8.4 |
|
Copyright (C) 2013 Free Software Foundation, Inc. |
|
This is free software; see the source for copying conditions. There is NO |
|
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. |
|
|
|
[34m[1mdocker version[0m |
|
Client: |
|
Version: 17.03.1-ce |
|
API version: 1.27 |
|
Go version: go1.7.5 |
|
Git commit: c6d412e |
|
Built: Mon Mar 27 17:10:36 2017 |
|
OS/Arch: linux/amd64 |
|
|
|
Server: |
|
Version: 17.03.1-ce |
|
API version: 1.27 (minimum version 1.12) |
|
Go version: go1.7.5 |
|
Git commit: c6d412e |
|
Built: Mon Mar 27 17:10:36 2017 |
|
OS/Arch: linux/amd64 |
|
Experimental: false |
|
[34m[1mclang version[0m |
|
clang version 3.9.0 (tags/RELEASE_390/final) |
|
Target: x86_64-unknown-linux-gnu |
|
Thread model: posix |
|
InstalledDir: /usr/local/clang-3.9.0/bin |
|
[34m[1mjq version[0m |
|
jq-1.5 |
|
[34m[1mbats version[0m |
|
Bats 0.4.0 |
|
[34m[1mshellcheck version[0m |
|
0.4.6 |
|
[34m[1mshfmt version[0m |
|
v1.3.1 |
|
[34m[1mccache version[0m |
|
ccache version 3.1.9 |
|
|
|
Copyright (C) 2002-2007 Andrew Tridgell |
|
Copyright (C) 2009-2011 Joel Rosdahl |
|
|
|
This program is free software; you can redistribute it and/or modify it under |
|
the terms of the GNU General Public License as published by the Free Software |
|
Foundation; either version 3 of the License, or (at your option) any later |
|
version. |
|
[34m[1mcmake version[0m |
|
cmake version 3.2.2 |
|
|
|
CMake suite maintained and supported by Kitware (kitware.com/cmake). |
|
[34m[1mheroku version[0m |
|
heroku-cli/6.13.19-6cd27b3 (linux-x64) node-v8.3.0 |
|
[34m[1mimagemagick version[0m |
|
Version: ImageMagick 6.7.7-10 2017-07-31 Q16 http://www.imagemagick.org |
|
[34m[1mmd5deep version[0m |
|
4.2 |
|
[34m[1mmercurial version[0m |
|
Mercurial Distributed SCM (version 4.2.2) |
|
(see https://mercurial-scm.org for more information) |
|
|
|
Copyright (C) 2005-2017 Matt Mackall and others |
|
This is free software; see the source for copying conditions. There is NO |
|
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. |
|
[34m[1mmysql version[0m |
|
mysql Ver 14.14 Distrib 5.6.33, for debian-linux-gnu (x86_64) using EditLine wrapper |
|
[34m[1mopenssl version[0m |
|
OpenSSL 1.0.1f 6 Jan 2014 |
|
[34m[1mpacker version[0m |
|
Packer v1.0.2 |
|
|
|
Your version of Packer is out of date! The latest version |
|
is 1.0.4. You can update by downloading from www.packer.io |
|
[34m[1mpostgresql client version[0m |
|
psql (PostgreSQL) 9.6.4 |
|
[34m[1mragel version[0m |
|
Ragel State Machine Compiler version 6.8 Feb 2013 |
|
Copyright (c) 2001-2009 by Adrian Thurston |
|
[34m[1msubversion version[0m |
|
svn, version 1.8.8 (r1568071) |
|
compiled Aug 10 2017, 17:20:39 on x86_64-pc-linux-gnu |
|
|
|
Copyright (C) 2013 The Apache Software Foundation. |
|
This software consists of contributions made by many people; |
|
see the NOTICE file for more information. |
|
Subversion is open source software, see http://subversion.apache.org/ |
|
|
|
The following repository access (RA) modules are available: |
|
|
|
* ra_svn : Module for accessing a repository using the svn network protocol. |
|
- with Cyrus SASL authentication |
|
- handles 'svn' scheme |
|
* ra_local : Module for accessing a repository on local disk. |
|
- handles 'file' scheme |
|
* ra_serf : Module for accessing a repository via WebDAV protocol using serf. |
|
- using serf 1.3.3 |
|
- handles 'http' scheme |
|
- handles 'https' scheme |
|
|
|
[34m[1msudo version[0m |
|
Sudo version 1.8.9p5 |
|
Configure options: --prefix=/usr -v --with-all-insults --with-pam --with-fqdn --with-logging=syslog --with-logfac=authpriv --with-env-editor --with-editor=/usr/bin/editor --with-timeout=15 --with-password-timeout=0 --with-passprompt=[sudo] password for %p: --without-lecture --with-tty-tickets --disable-root-mailer --enable-admin-flag --with-sendmail=/usr/sbin/sendmail --with-timedir=/var/lib/sudo --mandir=/usr/share/man --libexecdir=/usr/lib/sudo --with-sssd --with-sssd-lib=/usr/lib/x86_64-linux-gnu --with-selinux |
|
Sudoers policy plugin version 1.8.9p5 |
|
Sudoers file grammar version 43 |
|
|
|
Sudoers path: /etc/sudoers |
|
Authentication methods: 'pam' |
|
Syslog facility if syslog is being used for logging: authpriv |
|
Syslog priority to use when user authenticates successfully: notice |
|
Syslog priority to use when user authenticates unsuccessfully: alert |
|
Send mail if the user is not in sudoers |
|
Use a separate timestamp for each user/tty combo |
|
Lecture user the first time they run sudo |
|
Root may run sudo |
|
Allow some information gathering to give useful error messages |
|
Require fully-qualified hostnames in the sudoers file |
|
Visudo will honor the EDITOR environment variable |
|
Set the LOGNAME and USER environment variables |
|
Length at which to wrap log file lines (0 for no wrap): 80 |
|
Authentication timestamp timeout: 15.0 minutes |
|
Password prompt timeout: 0.0 minutes |
|
Number of tries to enter a password: 3 |
|
Umask to use or 0777 to use user's: 022 |
|
Path to mail program: /usr/sbin/sendmail |
|
Flags for mail program: -t |
|
Address to send mail to: root |
|
Subject line for mail messages: *** SECURITY information for %h *** |
|
Incorrect password message: Sorry, try again. |
|
Path to authentication timestamp dir: /var/lib/sudo |
|
Default password prompt: [sudo] password for %p: |
|
Default user to run commands as: root |
|
Value to override user's $PATH with: /usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin |
|
Path to the editor for use by visudo: /usr/bin/editor |
|
When to require a password for 'list' pseudocommand: any |
|
When to require a password for 'verify' pseudocommand: all |
|
File descriptors >= 3 will be closed before executing a command |
|
Environment variables to check for sanity: |
|
TZ |
|
TERM |
|
LINGUAS |
|
LC_* |
|
LANGUAGE |
|
LANG |
|
COLORTERM |
|
Environment variables to remove: |
|
RUBYOPT |
|
RUBYLIB |
|
PYTHONUSERBASE |
|
PYTHONINSPECT |
|
PYTHONPATH |
|
PYTHONHOME |
|
TMPPREFIX |
|
ZDOTDIR |
|
READNULLCMD |
|
NULLCMD |
|
FPATH |
|
PERL5DB |
|
PERL5OPT |
|
PERL5LIB |
|
PERLLIB |
|
PERLIO_DEBUG |
|
JAVA_TOOL_OPTIONS |
|
SHELLOPTS |
|
GLOBIGNORE |
|
PS4 |
|
BASH_ENV |
|
ENV |
|
TERMCAP |
|
TERMPATH |
|
TERMINFO_DIRS |
|
TERMINFO |
|
_RLD* |
|
LD_* |
|
PATH_LOCALE |
|
NLSPATH |
|
HOSTALIASES |
|
RES_OPTIONS |
|
LOCALDOMAIN |
|
CDPATH |
|
IFS |
|
Environment variables to preserve: |
|
JAVA_HOME |
|
TRAVIS |
|
CI |
|
DEBIAN_FRONTEND |
|
XAUTHORIZATION |
|
XAUTHORITY |
|
PS2 |
|
PS1 |
|
PATH |
|
LS_COLORS |
|
KRB5CCNAME |
|
HOSTNAME |
|
HOME |
|
DISPLAY |
|
COLORS |
|
Locale to use while parsing sudoers: C |
|
Directory in which to store input/output logs: /var/log/sudo-io |
|
File in which to store the input/output log: %{seq} |
|
Add an entry to the utmp/utmpx file when allocating a pty |
|
PAM service name to use |
|
PAM service name to use for login shells |
|
Create a new PAM session for the command to run in |
|
Maximum I/O log sequence number: 0 |
|
|
|
Local IP address and netmask pairs: |
|
10.240.0.10/255.255.255.255 |
|
172.17.0.1/255.255.0.0 |
|
|
|
Sudoers I/O plugin version 1.8.9p5 |
|
[34m[1mgzip version[0m |
|
gzip 1.6 |
|
Copyright (C) 2007, 2010, 2011 Free Software Foundation, Inc. |
|
Copyright (C) 1993 Jean-loup Gailly. |
|
This is free software. You may redistribute copies of it under the terms of |
|
the GNU General Public License <http://www.gnu.org/licenses/gpl.html>. |
|
There is NO WARRANTY, to the extent permitted by law. |
|
|
|
Written by Jean-loup Gailly. |
|
[34m[1mzip version[0m |
|
Copyright (c) 1990-2008 Info-ZIP - Type 'zip "-L"' for software license. |
|
This is Zip 3.0 (July 5th 2008), by Info-ZIP. |
|
Currently maintained by E. Gordon. Please send bug reports to |
|
the authors using the web page at www.info-zip.org; see README for details. |
|
|
|
Latest sources and executables are at ftp://ftp.info-zip.org/pub/infozip, |
|
as of above date; see http://www.info-zip.org/ for other sites. |
|
|
|
Compiled with gcc 4.8.2 for Unix (Linux ELF) on Oct 21 2013. |
|
|
|
Zip special compilation options: |
|
USE_EF_UT_TIME (store Universal Time) |
|
BZIP2_SUPPORT (bzip2 library version 1.0.6, 6-Sept-2010) |
|
bzip2 code and library copyright (c) Julian R Seward |
|
(See the bzip2 license for terms of use) |
|
SYMLINK_SUPPORT (symbolic links supported) |
|
LARGE_FILE_SUPPORT (can read and write large files on file system) |
|
ZIP64_SUPPORT (use Zip64 to store large files in archives) |
|
UNICODE_SUPPORT (store and read UTF-8 Unicode paths) |
|
STORE_UNIX_UIDs_GIDs (store UID/GID sizes/values using new extra field) |
|
UIDGID_NOT_16BIT (old Unix 16-bit UID/GID extra field not used) |
|
[encryption, version 2.91 of 05 Jan 2007] (modified for Zip 3) |
|
|
|
Encryption notice: |
|
The encryption code of this program is not copyrighted and is |
|
put in the public domain. It was originally written in Europe |
|
and, to the best of our knowledge, can be freely distributed |
|
in both source and object forms from any country, including |
|
the USA under License Exception TSU of the U.S. Export |
|
Administration Regulations (section 740.13(e)) of 6 June 2002. |
|
|
|
Zip environment options: |
|
ZIP: [none] |
|
ZIPOPT: [none] |
|
[34m[1mvim version[0m |
|
VIM - Vi IMproved 7.4 (2013 Aug 10, compiled Nov 24 2016 16:43:18) |
|
Included patches: 1-52 |
|
Extra patches: 8.0.0056 |
|
Modified by pkg-vim-maintainers@lists.alioth.debian.org |
|
Compiled by buildd@ |
|
Huge version without GUI. Features included (+) or not (-): |
|
+acl +farsi +mouse_netterm +syntax |
|
+arabic +file_in_path +mouse_sgr +tag_binary |
|
+autocmd +find_in_path -mouse_sysmouse +tag_old_static |
|
-balloon_eval +float +mouse_urxvt -tag_any_white |
|
-browse +folding +mouse_xterm -tcl |
|
++builtin_terms -footer +multi_byte +terminfo |
|
+byte_offset +fork() +multi_lang +termresponse |
|
+cindent +gettext -mzscheme +textobjects |
|
-clientserver -hangul_input +netbeans_intg +title |
|
-clipboard +iconv +path_extra -toolbar |
|
+cmdline_compl +insert_expand -perl +user_commands |
|
+cmdline_hist +jumplist +persistent_undo +vertsplit |
|
+cmdline_info +keymap +postscript +virtualedit |
|
+comments +langmap +printer +visual |
|
+conceal +libcall +profile +visualextra |
|
+cryptv +linebreak +python +viminfo |
|
+cscope +lispindent -python3 +vreplace |
|
+cursorbind +listcmds +quickfix +wildignore |
|
+cursorshape +localmap +reltime +wildmenu |
|
+dialog_con -lua +rightleft +windows |
|
+diff +menu -ruby +writebackup |
|
+digraphs +mksession +scrollbind -X11 |
|
-dnd +modify_fname +signs -xfontset |
|
-ebcdic +mouse +smartindent -xim |
|
+emacs_tags -mouseshape -sniff -xsmp |
|
+eval +mouse_dec +startuptime -xterm_clipboard |
|
+ex_extra +mouse_gpm +statusline -xterm_save |
|
+extra_search -mouse_jsbterm -sun_workshop -xpm |
|
system vimrc file: "$VIM/vimrc" |
|
user vimrc file: "$HOME/.vimrc" |
|
2nd user vimrc file: "~/.vim/vimrc" |
|
user exrc file: "$HOME/.exrc" |
|
fall-back for $VIM: "/usr/share/vim" |
|
Compilation: gcc -c -I. -Iproto -DHAVE_CONFIG_H -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 |
|
Linking: gcc -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed -o vim -lm -ltinfo -lnsl -lselinux -lacl -lattr -lgpm -ldl -L/usr/lib/python2.7/config-x86_64-linux-gnu -lpython2.7 -lpthread -ldl -lutil -lm -Xlinker -export-dynamic -Wl,-O1 -Wl,-Bsymbolic-functions |
|
[34m[1miptables version[0m |
|
iptables v1.4.21 |
|
[34m[1mcurl version[0m |
|
curl 7.35.0 (x86_64-pc-linux-gnu) libcurl/7.35.0 OpenSSL/1.0.1f zlib/1.2.8 libidn/1.28 librtmp/2.3 |
|
[34m[1mwget version[0m |
|
GNU Wget 1.15 built on linux-gnu. |
|
[34m[1mrsync version[0m |
|
rsync version 3.1.0 protocol version 31 |
|
[34m[1mgimme version[0m |
|
v1.2.0 |
|
[34m[1mnvm version[0m |
|
0.33.2 |
|
[34m[1mperlbrew version[0m |
|
/home/travis/perl5/perlbrew/bin/perlbrew - App::perlbrew/0.80 |
|
[34m[1mphpenv version[0m |
|
rbenv 1.1.1-4-g4ebd1bd |
|
[34m[1mrvm version[0m |
|
rvm 1.29.2 (latest) by Michal Papis, Piotr Kuczynski, Wayne E. Seguin [https://rvm.io/] |
|
[34m[1mdefault ruby version[0m |
|
ruby 2.4.1p111 (2017-03-22 revision 58053) [x86_64-linux] |
|
[34m[1mCouchDB version[0m |
|
couchdb 1.6.1 |
|
[34m[1mElasticSearch version[0m |
|
5.5.0 |
|
[34m[1mInstalled Firefox version[0m |
|
firefox 55.0.2 |
|
[34m[1mMongoDB version[0m |
|
MongoDB 3.2.16 |
|
[34m[1mPre-installed PostgreSQL versions[0m |
|
9.2.22 |
|
9.3.18 |
|
9.4.13 |
|
9.5.8 |
|
9.6.4 |
|
[34m[1mRabbitMQ Version[0m |
|
3.6.11 |
|
[34m[1mRedis version[0m |
|
redis-server 4.0.1 |
|
[34m[1mriak version[0m |
|
2.2.3 |
|
[34m[1mPre-installed Go versions[0m |
|
1.7.4 |
|
[34m[1mant version[0m |
|
Apache Ant(TM) version 1.9.3 compiled on April 8 2014 |
|
[34m[1mmvn version[0m |
|
Apache Maven 3.5.0 (ff8f5e7444045639af65f6095c62210b5713f426; 2017-04-03T19:39:06Z) |
|
Maven home: /usr/local/maven-3.5.0 |
|
Java version: 1.8.0_144, vendor: Oracle Corporation |
|
Java home: /usr/lib/jvm/java-8-oracle/jre |
|
Default locale: en_US, platform encoding: UTF-8 |
|
OS name: "linux", version: "4.4.0-81-generic", arch: "amd64", family: "unix" |
|
[34m[1mgradle version[0m |
|
|
|
------------------------------------------------------------ |
|
Gradle 4.0.1 |
|
------------------------------------------------------------ |
|
|
|
Build time: 2017-07-07 14:02:41 UTC |
|
Revision: 38e5dc0f772daecca1d2681885d3d85414eb6826 |
|
|
|
Groovy: 2.4.11 |
|
Ant: Apache Ant(TM) version 1.9.6 compiled on June 29 2015 |
|
JVM: 1.8.0_144 (Oracle Corporation 25.144-b01) |
|
OS: Linux 4.4.0-81-generic amd64 |
|
|
|
[34m[1mlein version[0m |
|
WARNING: You're currently running as root; probably by accident. |
|
Press control-C to abort or Enter to continue as root. |
|
Set LEIN_ROOT to disable this warning. |
|
Leiningen 2.7.1 on Java 1.8.0_144 Java HotSpot(TM) 64-Bit Server VM |
|
[34m[1mPre-installed Node.js versions[0m |
|
v4.8.4 |
|
v6.11.2 |
|
v6.9.4 |
|
v7.4.0 |
|
v8.4 |
|
[34m[1mphpenv versions[0m |
|
system |
|
5.6 |
|
* 5.6.31 (set by /home/travis/.phpenv/version) |
|
7.0 |
|
7.0.22 |
|
hhvm |
|
hhvm-stable |
|
[34m[1mcomposer --version[0m |
|
Composer version 1.4.2 2017-05-17 08:17:52 |
|
[34m[1mPre-installed Ruby versions[0m |
|
ruby-2.2.7 |
|
ruby-2.3.4 |
|
ruby-2.4.1 |
|
travis_fold:end:system_info |
|
[0K |
|
[32;1mNetwork availability confirmed.[0m |
|
|
|
$ jdk_switcher use oraclejdk8 |
|
Switching to Oracle JDK8 (java-8-oracle), JAVA_HOME will be set to /usr/lib/jvm/java-8-oracle |
|
[32;1mUpdating sbt[0m |
|
travis_fold:start:services |
|
[0Ktravis_time:start:00e16b6c |
|
[0K$ sudo service docker start |
|
start: Job is already running: docker |
|
|
|
travis_time:end:00e16b6c:start=1533955186065736095,finish=1533955186083951628,duration=18215533 |
|
[0Ktravis_time:start:042ab636 |
|
[0K$ sudo service mysql start |
|
start: Job is already running: mysql |
|
|
|
travis_time:end:042ab636:start=1533955186090949536,finish=1533955186107305138,duration=16355602 |
|
[0Ktravis_fold:end:services |
|
[0K |
|
travis_fold:start:git.checkout |
|
[0Ktravis_time:start:0077355d |
|
[0K$ git clone --depth=50 --branch=ks_retry_centaur https://github.com/broadinstitute/cromwell.git broadinstitute/cromwell |
|
Cloning into 'broadinstitute/cromwell'... |
|
|
|
travis_time:end:0077355d:start=1533955189123130492,finish=1533955190575911376,duration=1452780884 |
|
[0K$ cd broadinstitute/cromwell |
|
$ git checkout -qf 24a8eb1f3902570da6e701481bce9548ddd95d38 |
|
travis_fold:end:git.checkout |
|
[0K |
|
[33;1mSetting environment variables from repository settings[0m |
|
$ export COVERALLS_REPO_TOKEN=[secure] |
|
$ export ARTIFACTORY_USERNAME=[secure] |
|
$ export CROMWELL_SERVICE_ACCOUNT=[secure] |
|
$ export ARTIFACTORY_PASSWORD=[secure] |
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$ export DOCKER_USERNAME=[secure] |
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$ export DOCKER_PASSWORD=[secure] |
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$ export encrypted_5ebd3ff04788_key=[secure] |
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$ export encrypted_5ebd3ff04788_iv=[secure] |
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$ export encrypted_5ffc1dec8cd8_key=[secure] |
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$ export encrypted_5ffc1dec8cd8_iv=[secure] |
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$ export JES_TOKEN=[secure] |
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[33;1mSetting environment variables from .travis.yml[0m |
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$ export BUILD_TYPE=centaurPapiV2 |
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[33;1mDisabling Gradle daemon[0m |
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$ mkdir -p ~/.gradle && echo "org.gradle.daemon=false" >> ~/.gradle/gradle.properties |
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$ export JVM_OPTS=@/etc/sbt/jvmopts |
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$ export SBT_OPTS=@/etc/sbt/sbtopts |
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travis_fold:start:cache.1 |
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[0KSetting up build cache |
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$ export CASHER_DIR=$HOME/.casher |
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travis_time:start:15dbb8ef |
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[0K$ Installing caching utilities |
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travis_time:end:15dbb8ef:start=1533955195432701538,finish=1533955195575812068,duration=143110530 |
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[0Ktravis_time:start:078e8924 |
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[0Ktravis_time:start:01731eac |
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[0K[32;1mattempting to download cache archive[0m |
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[32;1mfetching ks_retry_centaur/cache-linux-trusty-7db189fc17976e79bba4f4d0c504ee25c4045fd1a7288ef4df0afbe8479e432e--jdk-oraclejdk8--scala-2.12.6.tgz[0m |
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[32;1mfetching ks_retry_centaur/cache--jdk-oraclejdk8--scala-2.12.6.tgz[0m |
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[32;1mfetching develop/cache-linux-trusty-7db189fc17976e79bba4f4d0c504ee25c4045fd1a7288ef4df0afbe8479e432e--jdk-oraclejdk8--scala-2.12.6.tgz[0m |
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[32;1mfound cache[0m |
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travis_time:end:01731eac:start=1533955195597248394,finish=1533955329827208293,duration=134229959899 |
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[0Ktravis_time:start:09fb8768 |
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travis_time:end:09fb8768:start=1533955329834294432,finish=1533955329839288593,duration=4994161 |
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[0Ktravis_time:start:2bbc3744 |
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[0K[32;1madding /home/travis/.ivy2/cache to cache[0m |
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[32;1mcreating directory /home/travis/.ivy2/cache[0m |
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[32;1madding /home/travis/.coursier/cache to cache[0m |
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[32;1mcreating directory /home/travis/.coursier/cache[0m |
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travis_time:end:2bbc3744:start=1533955329846264090,finish=1533955335731490287,duration=5885226197 |
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[0Ktravis_fold:end:cache.1 |
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[0K$ java -Xmx32m -version |
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java version "1.8.0_144" |
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Java(TM) SE Runtime Environment (build 1.8.0_144-b01) |
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Java HotSpot(TM) 64-Bit Server VM (build 25.144-b01, mixed mode) |
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$ javac -J-Xmx32m -version |
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javac 1.8.0_144 |
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Using Scala 2.12.6 |
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travis_time:start:009f4ff8 |
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[0K$ src/ci/bin/test.sh |
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CROMWELL_BUILD_IS_CI='true' |
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CROMWELL_BUILD_IS_CRON='false' |
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CROMWELL_BUILD_IS_SECURE='true' |
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CROMWELL_BUILD_REQUIRES_SECURE='false' |
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CROMWELL_BUILD_TYPE='centaurPapiV2' |
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CROMWELL_BUILD_BRANCH='ks_retry_centaur' |
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CROMWELL_BUILD_EVENT='push' |
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CROMWELL_BUILD_TAG='' |
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CROMWELL_BUILD_NUMBER='23119.4' |
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CROMWELL_BUILD_PROVIDER='travis' |
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CROMWELL_BUILD_OS='linux' |
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CROMWELL_BUILD_URL='https://travis-ci.org/broadinstitute/cromwell/jobs/414767660' |
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Unable to find image 'broadinstitute/dsde-toolbox:latest' locally |
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latest: Pulling from broadinstitute/dsde-toolbox |
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bdc9008d0fa5: Pulling fs layer |
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70208da92064: Pulling fs layer |
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a435800beb4e: Pulling fs layer |
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9639ad7fa924: Pulling fs layer |
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0ba8da226d1b: Pulling fs layer |
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27acbdaf564d: Pulling fs layer |
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f169f35fc3d9: Pulling fs layer |
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f25d4b4b67a2: Pulling fs layer |
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37753684e611: Pulling fs layer |
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9639ad7fa924: Waiting |
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0ba8da226d1b: Waiting |
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f169f35fc3d9: Waiting |
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f25d4b4b67a2: Waiting |
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37753684e611: Waiting |
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bdc9008d0fa5: Download complete |
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bdc9008d0fa5: Pull complete |
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a435800beb4e: Download complete |
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70208da92064: Verifying Checksum |
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27acbdaf564d: Verifying Checksum |
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f169f35fc3d9: Verifying Checksum |
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f169f35fc3d9: Download complete |
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9639ad7fa924: Verifying Checksum |
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9639ad7fa924: Download complete |
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37753684e611: Verifying Checksum |
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37753684e611: Download complete |
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f25d4b4b67a2: Verifying Checksum |
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f25d4b4b67a2: Download complete |
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70208da92064: Pull complete |
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a435800beb4e: Pull complete |
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9639ad7fa924: Pull complete |
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0ba8da226d1b: Verifying Checksum |
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0ba8da226d1b: Download complete |
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0ba8da226d1b: Pull complete |
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Digest: sha256:1f0982101148148808a791912a4fbd5b3f1b8317e7cb5e6b6856923871b89c8e |
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Status: Downloaded newer image for broadinstitute/dsde-toolbox:latest |
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vault auth success |
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Rendering /resources/artifactory_credentials.properties.ctmpl to /resources/artifactory_credentials.properties |
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Rendering /resources/bcs_application.conf.ctmpl to /resources/bcs_application.conf |
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Rendering /resources/centaur_application_sentry_config.inc.conf.ctmpl to /resources/centaur_application_sentry_config.inc.conf |
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Rendering /resources/cromwell-centaur-requester-pays-service-account.json.ctmpl to /resources/cromwell-centaur-requester-pays-service-account.json |
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Rendering /resources/cromwell-centaur-service-account.json.ctmpl to /resources/cromwell-centaur-service-account.json |
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Rendering /resources/cromwell-service-account.json.ctmpl to /resources/cromwell-service-account.json |
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Rendering /resources/dockerhub_auth.inc.sh.ctmpl to /resources/dockerhub_auth.inc.sh |
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Rendering /resources/dockerhub_provider_config_v1.inc.conf.ctmpl to /resources/dockerhub_provider_config_v1.inc.conf |
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Rendering /resources/github_private_deploy_key.ctmpl to /resources/github_private_deploy_key |
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Rendering /resources/papi_application.inc.conf.ctmpl to /resources/papi_application.inc.conf |
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Rendering /resources/papi_refresh_token.txt.ctmpl to /resources/papi_refresh_token.txt |
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Rendering /resources/private_docker_papi_v2_usa.options.ctmpl to /resources/private_docker_papi_v2_usa.options |
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Login Succeeded |
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/usr/local/lib/python2.7/dist-packages/pip/_vendor/requests/packages/urllib3/util/ssl_.py:318: SNIMissingWarning: An HTTPS request has been made, but the SNI (Subject Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/security.html#snimissingwarning. |
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SNIMissingWarning |
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/usr/local/lib/python2.7/dist-packages/pip/_vendor/requests/packages/urllib3/util/ssl_.py:122: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/security.html#insecureplatformwarning. |
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InsecurePlatformWarning |
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/usr/local/lib/python2.7/dist-packages/pip/_vendor/requests/packages/urllib3/util/ssl_.py:122: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/security.html#insecureplatformwarning. |
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InsecurePlatformWarning |
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Collecting pip |
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/usr/local/lib/python2.7/dist-packages/pip/_vendor/requests/packages/urllib3/util/ssl_.py:122: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/security.html#insecureplatformwarning. |
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InsecurePlatformWarning |
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Downloading https://files.pythonhosted.org/packages/5f/25/e52d3f31441505a5f3af41213346e5b6c221c9e086a166f3703d2ddaf940/pip-18.0-py2.py3-none-any.whl (1.3MB) |
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Installing collected packages: pip |
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Found existing installation: pip 9.0.1 |
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Uninstalling pip-9.0.1: |
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Successfully uninstalled pip-9.0.1 |
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Successfully installed pip-18.0 |
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/usr/local/lib/python2.7/dist-packages/pip/_vendor/requests/packages/urllib3/util/ssl_.py:122: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/security.html#insecureplatformwarning. |
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InsecurePlatformWarning |
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Reading package lists... |
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Building dependency tree... |
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Reading state information... |
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procps is already the newest version (1:3.3.9-1ubuntu2.2). |
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0 upgraded, 0 newly installed, 0 to remove and 5 not upgraded. |
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Requirement already satisfied: requests[security] in /usr/lib/python2.7/dist-packages (2.2.1) |
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requests 2.2.1 does not provide the extra 'security' |
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Collecting cwltool==1.0.20180711112827 |
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/usr/local/lib/python2.7/dist-packages/pip/_vendor/urllib3/util/ssl_.py:369: SNIMissingWarning: An HTTPS request has been made, but the SNI (Server Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings |
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SNIMissingWarning |
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/usr/local/lib/python2.7/dist-packages/pip/_vendor/urllib3/util/ssl_.py:160: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings |
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InsecurePlatformWarning |
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/usr/local/lib/python2.7/dist-packages/pip/_vendor/urllib3/util/ssl_.py:160: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings |
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InsecurePlatformWarning |
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Downloading https://files.pythonhosted.org/packages/a4/4c/2e4034c9dc7f32bd0a4bf86cbf0dd9eeff4e10c1611e4d92aad73b28d5c5/cwltool-1.0.20180711112827-py2.py3-none-any.whl (666kB) |
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Collecting rdflib<4.3.0,>=4.2.2 (from cwltool==1.0.20180711112827) |
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Downloading https://files.pythonhosted.org/packages/c5/77/1fa0f4cffd5faad496b1344ab665902bb2609f56e0fb19bcf80cff485da0/rdflib-4.2.2.tar.gz (905kB) |
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Collecting prov==1.5.1 (from cwltool==1.0.20180711112827) |
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Downloading https://files.pythonhosted.org/packages/8e/fb/2c4c618185be2bda327f9dacd16b3122cc938809f19df7be840595d0e584/prov-1.5.1-py2.py3-none-any.whl (426kB) |
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Collecting ruamel.yaml<0.15,>=0.12.4 (from cwltool==1.0.20180711112827) |
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Downloading https://files.pythonhosted.org/packages/aa/1d/7d96d1a5e091e3d51e692924a445c336c304a00b1c0a30169d7ccb064de7/ruamel.yaml-0.14.12-cp27-cp27mu-manylinux1_x86_64.whl (519kB) |
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Collecting typing>=3.5.3 (from cwltool==1.0.20180711112827) |
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Downloading https://files.pythonhosted.org/packages/0d/4d/4e5985d075d241d686a1663fa1f88b61d544658d08c1375c7c6aac32afc3/typing-3.6.4-py2-none-any.whl |
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Collecting shellescape<3.5,>=3.4.1 (from cwltool==1.0.20180711112827) |
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Downloading https://files.pythonhosted.org/packages/51/b6/986c99a10040beaaefca1ad6c93bd7738cb8e4f52f6caed13d3ed1caa7e4/shellescape-3.4.1-py2.py3-none-any.whl |
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Collecting mypy-extensions (from cwltool==1.0.20180711112827) |
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Downloading https://files.pythonhosted.org/packages/f7/51/a55d2c14e37821e6938b2e150afd50f0ed9ee4beaccb5d71b1014be63e6c/mypy_extensions-0.3.0.tar.gz |
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Collecting requests>=2.4.3 (from cwltool==1.0.20180711112827) |
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Downloading https://files.pythonhosted.org/packages/65/47/7e02164a2a3db50ed6d8a6ab1d6d60b69c4c3fdf57a284257925dfc12bda/requests-2.19.1-py2.py3-none-any.whl (91kB) |
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Collecting psutil (from cwltool==1.0.20180711112827) |
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Downloading https://files.pythonhosted.org/packages/51/9e/0f8f5423ce28c9109807024f7bdde776ed0b1161de20b408875de7e030c3/psutil-5.4.6.tar.gz (418kB) |
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Collecting bagit>=1.6.4 (from cwltool==1.0.20180711112827) |
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Downloading https://files.pythonhosted.org/packages/bd/d6/7f505929284541705c6acf83726eb5c74b092e7eaed3a166bc428215bb89/bagit-1.7.0-py2.py3-none-any.whl |
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Collecting setuptools (from cwltool==1.0.20180711112827) |
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Downloading https://files.pythonhosted.org/packages/ff/f4/385715ccc461885f3cedf57a41ae3c12b5fec3f35cce4c8706b1a112a133/setuptools-40.0.0-py2.py3-none-any.whl (567kB) |
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Collecting six>=1.8.0 (from cwltool==1.0.20180711112827) |
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Downloading https://files.pythonhosted.org/packages/67/4b/141a581104b1f6397bfa78ac9d43d8ad29a7ca43ea90a2d863fe3056e86a/six-1.11.0-py2.py3-none-any.whl |
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Collecting schema-salad<3,>=2.6.20170927145003 (from cwltool==1.0.20180711112827) |
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Downloading https://files.pythonhosted.org/packages/18/dc/95adeef0fec60018921ae0f2af2fce7f8f02dfa0d896418d91c2dddba7b3/schema_salad-2.7.20180809223002-py2.py3-none-any.whl (382kB) |
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Collecting pathlib2==2.3.2; python_version < "3" (from cwltool==1.0.20180711112827) |
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Downloading https://files.pythonhosted.org/packages/66/a7/9f8d84f31728d78beade9b1271ccbfb290c41c1e4dc13dbd4997ad594dcd/pathlib2-2.3.2-py2.py3-none-any.whl |
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Collecting subprocess32>=3.5.0; os_name == "posix" (from cwltool==1.0.20180711112827) |
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Downloading https://files.pythonhosted.org/packages/c3/5f/7117737fc7114061837a4f51670d863dd7f7f9c762a6546fa8a0dcfe61c8/subprocess32-3.5.2.tar.gz (96kB) |
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Collecting isodate (from rdflib<4.3.0,>=4.2.2->cwltool==1.0.20180711112827) |
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Downloading https://files.pythonhosted.org/packages/9b/9f/b36f7774ff5ea8e428fdcfc4bb332c39ee5b9362ddd3d40d9516a55221b2/isodate-0.6.0-py2.py3-none-any.whl (45kB) |
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Collecting pyparsing (from rdflib<4.3.0,>=4.2.2->cwltool==1.0.20180711112827) |
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Downloading https://files.pythonhosted.org/packages/6a/8a/718fd7d3458f9fab8e67186b00abdd345b639976bc7fb3ae722e1b026a50/pyparsing-2.2.0-py2.py3-none-any.whl (56kB) |
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Collecting lxml (from prov==1.5.1->cwltool==1.0.20180711112827) |
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Downloading https://files.pythonhosted.org/packages/39/e0/bb4bb8d03a98ba530a13e5d27c7ae5eb9b2b53ce36c4e854429fcf2b90be/lxml-4.2.4-cp27-cp27mu-manylinux1_x86_64.whl (5.8MB) |
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Collecting networkx (from prov==1.5.1->cwltool==1.0.20180711112827) |
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Downloading https://files.pythonhosted.org/packages/11/42/f951cc6838a4dff6ce57211c4d7f8444809ccbe2134179950301e5c4c83c/networkx-2.1.zip (1.6MB) |
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Collecting python-dateutil (from prov==1.5.1->cwltool==1.0.20180711112827) |
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Downloading https://files.pythonhosted.org/packages/cf/f5/af2b09c957ace60dcfac112b669c45c8c97e32f94aa8b56da4c6d1682825/python_dateutil-2.7.3-py2.py3-none-any.whl (211kB) |
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Collecting ruamel.ordereddict (from ruamel.yaml<0.15,>=0.12.4->cwltool==1.0.20180711112827) |
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Downloading https://files.pythonhosted.org/packages/f3/2c/fa6d75dc459b371ed3b88fdbf8042785ce1655073c884fd97bdbb9f48e01/ruamel.ordereddict-0.4.13-cp27-cp27mu-manylinux1_x86_64.whl (99kB) |
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Collecting idna<2.8,>=2.5 (from requests>=2.4.3->cwltool==1.0.20180711112827) |
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Downloading https://files.pythonhosted.org/packages/4b/2a/0276479a4b3caeb8a8c1af2f8e4355746a97fab05a372e4a2c6a6b876165/idna-2.7-py2.py3-none-any.whl (58kB) |
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Collecting urllib3<1.24,>=1.21.1 (from requests>=2.4.3->cwltool==1.0.20180711112827) |
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Downloading https://files.pythonhosted.org/packages/bd/c9/6fdd990019071a4a32a5e7cb78a1d92c53851ef4f56f62a3486e6a7d8ffb/urllib3-1.23-py2.py3-none-any.whl (133kB) |
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Collecting chardet<3.1.0,>=3.0.2 (from requests>=2.4.3->cwltool==1.0.20180711112827) |
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Downloading https://files.pythonhosted.org/packages/bc/a9/01ffebfb562e4274b6487b4bb1ddec7ca55ec7510b22e4c51f14098443b8/chardet-3.0.4-py2.py3-none-any.whl (133kB) |
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Collecting certifi>=2017.4.17 (from requests>=2.4.3->cwltool==1.0.20180711112827) |
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Downloading https://files.pythonhosted.org/packages/7c/e6/92ad559b7192d846975fc916b65f667c7b8c3a32bea7372340bfe9a15fa5/certifi-2018.4.16-py2.py3-none-any.whl (150kB) |
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Collecting avro==1.8.1; python_version < "3" (from schema-salad<3,>=2.6.20170927145003->cwltool==1.0.20180711112827) |
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Downloading https://files.pythonhosted.org/packages/b8/d4/c0af0dd8e3e6994f3297b7d49aceed2b6b9a6b55e78c4c4c8448683aabba/avro-1.8.1.tar.gz (44kB) |
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Collecting CacheControl<0.12,>=0.11.7 (from schema-salad<3,>=2.6.20170927145003->cwltool==1.0.20180711112827) |
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Downloading https://files.pythonhosted.org/packages/c5/cb/7a78039c1e0d4e5fd9d8e9edf7ae34df469267e1c58873ca11af16e96bd8/CacheControl-0.11.7.tar.gz |
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Collecting lockfile>=0.9 (from schema-salad<3,>=2.6.20170927145003->cwltool==1.0.20180711112827) |
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Downloading https://files.pythonhosted.org/packages/c8/22/9460e311f340cb62d26a38c419b1381b8593b0bb6b5d1f056938b086d362/lockfile-0.12.2-py2.py3-none-any.whl |
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Collecting mistune<0.8,>=0.7.3 (from schema-salad<3,>=2.6.20170927145003->cwltool==1.0.20180711112827) |
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Downloading https://files.pythonhosted.org/packages/7b/ab/e71dd1ca31addcd0268c54859eaf75414a10fbc48c79078f7c3066e6ed0d/mistune-0.7.4-py2.py3-none-any.whl |
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Collecting rdflib-jsonld<0.5.0,>=0.3.0 (from schema-salad<3,>=2.6.20170927145003->cwltool==1.0.20180711112827) |
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Downloading https://files.pythonhosted.org/packages/ba/48/edaad22fc9de34500699f0c7fc9124385dd425fd18857244f126a6f7df66/rdflib-jsonld-0.4.0.tar.gz (53kB) |
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Collecting scandir; python_version < "3.5" (from pathlib2==2.3.2; python_version < "3"->cwltool==1.0.20180711112827) |
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Downloading https://files.pythonhosted.org/packages/16/2a/557af1181e6b4e30254d5a6163b18f5053791ca66e251e77ab08887e8fe3/scandir-1.9.0.tar.gz |
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Collecting decorator>=4.1.0 (from networkx->prov==1.5.1->cwltool==1.0.20180711112827) |
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Downloading https://files.pythonhosted.org/packages/bc/bb/a24838832ba35baf52f32ab1a49b906b5f82fb7c76b2f6a7e35e140bac30/decorator-4.3.0-py2.py3-none-any.whl |
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Building wheels for collected packages: rdflib, mypy-extensions, psutil, subprocess32, networkx, avro, CacheControl, rdflib-jsonld, scandir |
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Running setup.py bdist_wheel for rdflib: started |
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Running setup.py bdist_wheel for mypy-extensions: started |
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Running setup.py bdist_wheel for subprocess32: started |
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Running setup.py bdist_wheel for CacheControl: started |
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Running setup.py bdist_wheel for rdflib-jsonld: started |
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Running setup.py bdist_wheel for scandir: started |
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Successfully built rdflib mypy-extensions psutil subprocess32 networkx avro CacheControl rdflib-jsonld scandir |
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Installing collected packages: six, isodate, pyparsing, rdflib, lxml, decorator, networkx, python-dateutil, prov, ruamel.ordereddict, ruamel.yaml, typing, shellescape, mypy-extensions, idna, urllib3, chardet, certifi, requests, psutil, bagit, setuptools, avro, CacheControl, lockfile, mistune, rdflib-jsonld, schema-salad, scandir, pathlib2, subprocess32, cwltool |
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Successfully installed CacheControl-0.11.7 avro-1.8.1 bagit-1.7.0 certifi-2018.4.16 chardet-3.0.4 cwltool-1.0.20180711112827 decorator-4.3.0 idna-2.7 isodate-0.6.0 lockfile-0.12.2 lxml-4.2.4 mistune-0.7.4 mypy-extensions-0.3.0 networkx-2.1 pathlib2-2.3.2 prov-1.5.1 psutil-5.4.6 pyparsing-2.2.0 python-dateutil-2.7.3 rdflib-4.2.2 rdflib-jsonld-0.4.0 requests-2.19.1 ruamel.ordereddict-0.4.13 ruamel.yaml-0.14.12 scandir-1.9.0 schema-salad-2.7.20180809223002 setuptools-40.0.0 shellescape-3.4.1 six-1.11.0 subprocess32-3.5.2 typing-3.6.4 urllib3-1.23 |
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Using default tag: latest |
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latest: Pulling from library/ubuntu |
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c64513b74145: Pulling fs layer |
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c5d85cf7a05f: Pulling fs layer |
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e12192999ff1: Pulling fs layer |
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b6b268720157: Waiting |
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Digest: sha256:3f119dc0737f57f704ebecac8a6d8477b0f6ca1ca0332c7ee1395ed2c6a82be7 |
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Status: Downloaded newer image for ubuntu:latest |
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Warning: Using a password on the command line interface can be insecure. |
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find: `/home/travis/build/broadinstitute/cromwell/server/target/scala-2.12': No such file or directory |
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Java HotSpot(TM) 64-Bit Server VM warning: ignoring option MaxPermSize=512M; support was removed in 8.0 |
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Getting org.scala-sbt sbt 1.1.5 (this may take some time)... |
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Getting Scala 2.12.6 (for sbt)... |
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Checked https://repo1.maven.org/maven2/com/google/guava/guava-gwt/maven-metadata.xml.sha1 |
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Downloading https://repo1.maven.org/maven2/com/google/guava/guava-gwt/maven-metadata.xml.sha1 |
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Downloaded https://repo1.maven.org/maven2/com/google/guava/guava-gwt/maven-metadata.xml.sha1 |
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……………………………Java HotSpot(TM) 64-Bit Server VM warning: ignoring option MaxPermSize=512M; support was removed in 8.0 |
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[0m[[0m[0minfo[0m] [0m[0mLoading project definition from /home/travis/build/broadinstitute/cromwell/project/project[0m |
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[0m[[0m[0minfo[0m] [0m[0mLoading settings from plugins.sbt,swagger2markup.sbt ...[0m |
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[0m[[0m[0minfo[0m] [0m[0mResolving key references (38074 settings) ...[0m |
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[0m[[0m[0minfo[0m] [0m[0mSet current project to root (in build file:/home/travis/build/broadinstitute/cromwell/)[0m |
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[0m[[0m[0minfo[0m] [0m[0mDefining ThisBuild / coverageEnabled[0m |
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[0m[[0m[0minfo[0m] [0m[0mThe new value will be used by Compile / compile / scalacOptions, awsBackend / Compile / compile / scalacOptions and 93 others.[0m |
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[0m[[0m[0minfo[0m] [0m[0m Run `last` for details.[0m |
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[0m[[0m[0minfo[0m] [0m[0mCompiling 1 Scala source to /home/travis/build/broadinstitute/cromwell/languageFactories/language-factory-core/target/scala-2.12/classes ...[0m |
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[0m[[0m[0minfo[0m] [0m[0mCompiling 12 Scala sources to /home/travis/build/broadinstitute/cromwell/centaur/target/scala-2.12/it-classes ...[0m |
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……Running Centaur with sbt test excluding localdockertest tests |
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TEST_COMMAND is java -Dconfig.file=/home/travis/build/broadinstitute/cromwell/src/ci/resources/centaur_application.conf -Dcentaur.log-request-failures=true -Dcentaur.cromwell.mode=jar -Dcentaur.cromwell.jar.path=/home/travis/build/broadinstitute/cromwell/server/target/scala-2.12/cromwell-35-24a8eb1-SNAP.jar -Dcentaur.cromwell.jar.conf=/home/travis/build/broadinstitute/cromwell/src/ci/resources/papi_v2_application.conf -Dcentaur.cromwell.jar.log=/home/travis/build/broadinstitute/cromwell/logs/cromwell.log -Dcentaur.cromwell.jar.withRestart=true -Dcentaur.sendReceiveTimeout='10s' -cp 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stream/2.0.0-preview-9/appstream-2.0.0-preview-9.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/com/google/api/grpc/proto-google-iam-v1/0.1.21/proto-google-iam-v1-0.1.21.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/org/specs2/specs2-mock_2.12/3.8.9/specs2-mock_2.12-3.8.9.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/com/google/apis/google-api-services-iam/v1-rev215-1.22.0/google-api-services-iam-v1-rev215-1.22.0.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/eu/timepit/refined_2.12/0.8.3/refined_2.12-0.8.3.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/net/sourceforge/owlapi/owlapi-oboformat/5.1.4/owlapi-oboformat-5.1.4.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/io/circe/circe-refined_2.12/0.9.3/circe-refined_2.12-0.9.3.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/io/grpc/grpc-core/1.12.0/grpc-core-1.12.0.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/com/typesafe/scala-logging/scala-logging_2.12/3.7.1/scala-logging_2.12-3.7.1.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/io/opencensus/opencensus-contrib-grpc-metrics/0.11.0/opencensus-contrib-grpc-metrics-0.11.0.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/com/google/apis/google-api-services-cloudresourcemanager/v1-rev446-1.22.0/google-api-services-cloudresourcemanager-v1-rev446-1.22.0.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/com/google/auth/google-auth-library-credentials/0.8.0/google-auth-library-credentials-0.8.0.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/software/amazon/awssdk/xray/2.0.0-preview-9/xray-2.0.0-preview-9.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/nl/grons/metrics-scala_2.12/3.5.6/metrics-scala_2.12-3.5.6.jar:/home/travis/.coursier/cache/v1/https/[secure]%40broadinstitute.jfrog.io/broadinstitute/libs-release/org/broadinstitute/dsde/workbench/workbench-model_2.12/0.10-2fc79a3/workbench-model_2.12-0.10-2fc79a3.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/software/amazon/awssdk/acm/2.0.0-preview-9/acm-2.0.0-preview-9.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/io/netty/netty-codec-dns/4.1.22.Final/netty-codec-dns-4.1.22.Final.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/io/netty/netty-codec-http/4.1.22.Final/netty-codec-http-4.1.22.Final.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/software/amazon/awssdk/dax/2.0.0-preview-9/dax-2.0.0-preview-9.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/software/amazon/awssdk/clouddirectory/2.0.0-preview-9/clouddirectory-2.0.0-preview-9.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/org/apache/httpcomponents/httpclient/4.5.3/httpclient-4.5.3.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/software/amazon/awssdk/costandusagereport/2.0.0-preview-9/costandusagereport-2.0.0-preview-9.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/com/typesafe/akka/akka-http_2.12/10.1.3/akka-http_2.12-10.1.3.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/com/google/apis/google-api-services-cloudkms/v1-rev26-1.23.0/google-api-services-cloudkms-v1-rev26-1.23.0.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/org/scoverage/scalac-scoverage-runtime_2.12/1.3.1/scalac-scoverage-runtime_2.12-1.3.1.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/software/amazon/awssdk/elasticbeanstalk/2.0.0-preview-9/elasticbeanstalk-2.0.0-preview-9.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/ch/qos/logback/logback-access/1.2.3/logback-access-1.2.3.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/org/tukaani/xz/1.6/xz-1.6.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/com/typesafe/ssl-config-core_2.12/0.2.3/ssl-config-core_2.12-0.2.3.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/software/amazon/awssdk/efs/2.0.0-preview-9/efs-2.0.0-preview-9.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/org/eclipse/rdf4j/rdf4j-rio-datatypes/2.2.2/rdf4j-rio-datatypes-2.2.2.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/org/ow2/asm/asm-tree/5.0.3/asm-tree-5.0.3.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/com/github/kxbmap/configs_2.12/0.4.4/configs_2.12-0.4.4.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/org/typelevel/catalysts-platform_2.12/0.0.5/catalysts-platform_2.12-0.0.5.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/com/google/api-client/google-api-client/1.23.0/google-api-client-1.23.0.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/software/amazon/awssdk/support/2.0.0-preview-9/support-2.0.0-preview-9.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/org/apache/tika/tika-core/1.5/tika-core-1.5.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/org/scala-graph/graph-core_2.12/1.12.0/graph-core_2.12-1.12.0.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/com/google/inject/extensions/guice-assistedinject/4.1.0/guice-assistedinject-4.1.0.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/io/spray/spray-json_2.12/1.3.3/spray-json_2.12-1.3.3.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/org/eclipse/rdf4j/rdf4j-rio-rdfjson/2.2.2/rdf4j-rio-rdfjson-2.2.2.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/software/amazon/awssdk/events/2.0.0-preview-9/events-2.0.0-preview-9.jar org.scalatest.tools.Runner -R centaur/target/scala-2.12/it-classes -oD -u target/test-reports -PS100 -l localdockertest |
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[36mDiscovery starting.[0m |
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Starting Cromwell... |
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2018-08-11 03:00:30,822 INFO - Running with database db.url = jdbc:mysql://localhost:3306/cromwell_test?useSSL=false&rewriteBatchedStatements=true |
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Waiting for Cromwell... |
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Waiting for Cromwell... |
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Waiting for Cromwell... |
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Waiting for Cromwell... |
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Waiting for Cromwell... |
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Waiting for Cromwell... |
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Waiting for Cromwell... |
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Waiting for Cromwell... |
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…2018-08-11 03:01:10,220 INFO - Successfully acquired change log lock |
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Waiting for Cromwell... |
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Waiting for Cromwell... |
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Waiting for Cromwell... |
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2018-08-11 03:01:24,349 INFO - Creating database history table with name: cromwell_test.DATABASECHANGELOG |
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2018-08-11 03:01:24,393 INFO - Reading from cromwell_test.DATABASECHANGELOG |
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2018-08-11 03:01:25,848 WARN - modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case |
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2018-08-11 03:01:25,899 WARN - modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case |
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2018-08-11 03:01:25,923 WARN - modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case |
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2018-08-11 03:01:25,931 WARN - modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case |
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2018-08-11 03:01:25,933 WARN - modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case |
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2018-08-11 03:01:25,934 WARN - modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case |
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2018-08-11 03:01:25,935 WARN - modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case |
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2018-08-11 03:01:25,943 WARN - modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case |
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2018-08-11 03:01:25,944 WARN - modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case |
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2018-08-11 03:01:25,945 WARN - modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case |
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2018-08-11 03:01:25,946 WARN - modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case |
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2018-08-11 03:01:25,947 WARN - modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case |
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2018-08-11 03:01:25,948 WARN - modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case |
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2018-08-11 03:01:25,997 INFO - changelog.xml: changesets/db_schema.xml::db_schema_other_table_alldb::scottfrazer: Table WORKFLOW_EXECUTION created |
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2018-08-11 03:01:26,025 INFO - changelog.xml: changesets/db_schema.xml::db_schema_other_table_alldb::scottfrazer: Table EXECUTION created |
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2018-08-11 03:01:26,046 INFO - changelog.xml: changesets/db_schema.xml::db_schema_other_table_alldb::scottfrazer: Table JES_JOB created |
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2018-08-11 03:01:26,063 INFO - changelog.xml: changesets/db_schema.xml::db_schema_other_table_alldb::scottfrazer: Table LOCAL_JOB created |
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2018-08-11 03:01:26,064 INFO - changelog.xml: changesets/db_schema.xml::db_schema_other_table_alldb::scottfrazer: ChangeSet changesets/db_schema.xml::db_schema_other_table_alldb::scottfrazer ran successfully in 113ms |
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2018-08-11 03:01:26,222 INFO - changelog.xml: changesets/db_schema.xml::db_schema_symbol_table_mysql::scottfrazer: Table SYMBOL created |
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2018-08-11 03:01:26,223 INFO - changelog.xml: changesets/db_schema.xml::db_schema_symbol_table_mysql::scottfrazer: ChangeSet changesets/db_schema.xml::db_schema_symbol_table_mysql::scottfrazer ran successfully in 38ms |
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2018-08-11 03:01:26,284 INFO - changelog.xml: changesets/db_schema.xml::db_schema_constraints::scottfrazer: Index STATUS_IDX created |
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2018-08-11 03:01:26,332 INFO - changelog.xml: changesets/db_schema.xml::db_schema_constraints::scottfrazer: Foreign key constraint added to SYMBOL (WORKFLOW_EXECUTION_ID) |
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2018-08-11 03:01:26,360 INFO - changelog.xml: changesets/db_schema.xml::db_schema_constraints::scottfrazer: Foreign key constraint added to EXECUTION (WORKFLOW_EXECUTION_ID) |
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2018-08-11 03:01:26,384 INFO - changelog.xml: changesets/db_schema.xml::db_schema_constraints::scottfrazer: Foreign key constraint added to JES_JOB (EXECUTION_ID) |
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2018-08-11 03:01:26,409 INFO - changelog.xml: changesets/db_schema.xml::db_schema_constraints::scottfrazer: Foreign key constraint added to LOCAL_JOB (EXECUTION_ID) |
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2018-08-11 03:01:26,410 INFO - changelog.xml: changesets/db_schema.xml::db_schema_constraints::scottfrazer: ChangeSet changesets/db_schema.xml::db_schema_constraints::scottfrazer ran successfully in 150ms |
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2018-08-11 03:01:26,507 INFO - changelog.xml: changesets/symbol_iteration_null.xml::symbol_iteration_null::kshakir: Null constraint dropped from SYMBOL.ITERATION |
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2018-08-11 03:01:26,508 INFO - changelog.xml: changesets/symbol_iteration_null.xml::symbol_iteration_null::kshakir: ChangeSet changesets/symbol_iteration_null.xml::symbol_iteration_null::kshakir ran successfully in 36ms |
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2018-08-11 03:01:26,554 INFO - changelog.xml: changesets/wdl_and_inputs.xml::WORKFLOW_EXECUTION_AUX::mcovarr: Table WORKFLOW_EXECUTION_AUX created |
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2018-08-11 03:01:26,554 INFO - changelog.xml: changesets/wdl_and_inputs.xml::WORKFLOW_EXECUTION_AUX::mcovarr: ChangeSet changesets/wdl_and_inputs.xml::WORKFLOW_EXECUTION_AUX::mcovarr ran successfully in 30ms |
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2018-08-11 03:01:26,605 INFO - changelog.xml: changesets/wdl_and_inputs.xml::WE_AUX_CONSTRAINTS::mcovarr: Foreign key constraint added to WORKFLOW_EXECUTION_AUX (WORKFLOW_EXECUTION_ID) |
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2018-08-11 03:01:27,224 INFO - changelog.xml: changesets/wdl_and_inputs.xml::WE_AUX_CONSTRAINTS::mcovarr: Unique constraint added to WORKFLOW_EXECUTION_AUX(WORKFLOW_EXECUTION_ID) |
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2018-08-11 03:01:27,226 INFO - changelog.xml: changesets/wdl_and_inputs.xml::WE_AUX_CONSTRAINTS::mcovarr: ChangeSet changesets/wdl_and_inputs.xml::WE_AUX_CONSTRAINTS::mcovarr ran successfully in 651ms |
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2018-08-11 03:01:27,283 INFO - changelog.xml: changesets/drop_workflow_uri_and_local_command.xml::drop_workflow_uri_and_local_command::kshakir: Column WORKFLOW_EXECUTION.WDL_URI dropped |
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2018-08-11 03:01:27,304 INFO - changelog.xml: changesets/drop_workflow_uri_and_local_command.xml::drop_workflow_uri_and_local_command::kshakir: Column LOCAL_JOB.COMMAND dropped |
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2018-08-11 03:01:27,306 INFO - changelog.xml: changesets/drop_workflow_uri_and_local_command.xml::drop_workflow_uri_and_local_command::kshakir: ChangeSet changesets/drop_workflow_uri_and_local_command.xml::drop_workflow_uri_and_local_command::kshakir ran successfully in 46ms |
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2018-08-11 03:01:27,353 INFO - changelog.xml: changesets/local_job_allow_null.xml::local_job_allow_null::kshakir: Null constraint dropped from LOCAL_JOB.PID |
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2018-08-11 03:01:27,358 INFO - changelog.xml: changesets/local_job_allow_null.xml::local_job_allow_null::kshakir: Null constraint dropped from LOCAL_JOB.RC |
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2018-08-11 03:01:27,358 INFO - changelog.xml: changesets/local_job_allow_null.xml::local_job_allow_null::kshakir: ChangeSet changesets/local_job_allow_null.xml::local_job_allow_null::kshakir ran successfully in 30ms |
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2018-08-11 03:01:27,424 INFO - changelog.xml: changesets/symbol_iteration_not_null.xml::symbol_iteration_not_null::kshakir: Null constraint has been added to SYMBOL.ITERATION |
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2018-08-11 03:01:27,424 INFO - changelog.xml: changesets/symbol_iteration_not_null.xml::symbol_iteration_not_null::kshakir: ChangeSet changesets/symbol_iteration_not_null.xml::symbol_iteration_not_null::kshakir ran successfully in 42ms |
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2018-08-11 03:01:27,454 INFO - changelog.xml: changesets/add_unique_constraints.xml::add_unique_constraints::kshakir: Unique constraint added to WORKFLOW_EXECUTION(WORKFLOW_EXECUTION_UUID) |
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2018-08-11 03:01:27,468 INFO - changelog.xml: changesets/add_unique_constraints.xml::add_unique_constraints::kshakir: Unique constraint added to EXECUTION(WORKFLOW_EXECUTION_ID, CALL_FQN) |
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2018-08-11 03:01:27,485 INFO - changelog.xml: changesets/add_unique_constraints.xml::add_unique_constraints::kshakir: Unique constraint added to SYMBOL(WORKFLOW_EXECUTION_ID, SCOPE, NAME, ITERATION, IO) |
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2018-08-11 03:01:27,498 INFO - changelog.xml: changesets/add_unique_constraints.xml::add_unique_constraints::kshakir: Unique constraint added to LOCAL_JOB(EXECUTION_ID) |
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2018-08-11 03:01:27,509 INFO - changelog.xml: changesets/add_unique_constraints.xml::add_unique_constraints::kshakir: Unique constraint added to JES_JOB(EXECUTION_ID) |
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2018-08-11 03:01:27,510 INFO - changelog.xml: changesets/add_unique_constraints.xml::add_unique_constraints::kshakir: ChangeSet changesets/add_unique_constraints.xml::add_unique_constraints::kshakir ran successfully in 77ms |
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2018-08-11 03:01:27,574 INFO - changelog.xml: changesets/lengthen_wdl_value.xml::LENGTHEN_WDL_VALUE::sfrazer: SYMBOL.WDL_VALUE datatype was changed to LONGTEXT |
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2018-08-11 03:01:27,576 INFO - changelog.xml: changesets/lengthen_wdl_value.xml::LENGTHEN_WDL_VALUE::sfrazer: ChangeSet changesets/lengthen_wdl_value.xml::LENGTHEN_WDL_VALUE::sfrazer ran successfully in 35ms |
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2018-08-11 03:01:27,606 INFO - changelog.xml: changesets/add_index_in_execution.xml::add-index-in-execution::tjeandet: Columns INDEX(INT) added to EXECUTION |
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2018-08-11 03:01:27,633 INFO - changelog.xml: changesets/add_index_in_execution.xml::add-index-in-execution::tjeandet: Null constraint has been added to EXECUTION.INDEX |
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2018-08-11 03:01:27,633 INFO - changelog.xml: changesets/add_index_in_execution.xml::add-index-in-execution::tjeandet: ChangeSet changesets/add_index_in_execution.xml::add-index-in-execution::tjeandet ran successfully in 49ms |
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2018-08-11 03:01:27,660 INFO - changelog.xml: changesets/rename_iteration_to_index.xml::rename-iteration-to-index::tjeandet: Column SYMBOL.ITERATION renamed to INDEX |
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2018-08-11 03:01:27,661 INFO - changelog.xml: changesets/rename_iteration_to_index.xml::rename-iteration-to-index::tjeandet: ChangeSet changesets/rename_iteration_to_index.xml::rename-iteration-to-index::tjeandet ran successfully in 24ms |
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2018-08-11 03:01:27,709 INFO - changelog.xml: changesets/sge.xml::sge::scottfrazer: Table SGE_JOB created |
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2018-08-11 03:01:27,710 INFO - changelog.xml: changesets/sge.xml::sge::scottfrazer: ChangeSet changesets/sge.xml::sge::scottfrazer ran successfully in 24ms |
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2018-08-11 03:01:27,780 INFO - changelog.xml: changesets/sge.xml::db_schema_constraints::scottfrazer: Foreign key constraint added to SGE_JOB (EXECUTION_ID) |
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2018-08-11 03:01:27,781 INFO - changelog.xml: changesets/sge.xml::db_schema_constraints::scottfrazer: ChangeSet changesets/sge.xml::db_schema_constraints::scottfrazer ran successfully in 38ms |
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2018-08-11 03:01:27,821 INFO - changelog.xml: changesets/change_execution_unique_constraint.xml::change_execution_unique_constraint::tjeandet: Foreign key FK_EXECUTION_WORKFLOW_EXECUTION_ID dropped |
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2018-08-11 03:01:27,853 INFO - changelog.xml: changesets/change_execution_unique_constraint.xml::change_execution_unique_constraint::tjeandet: Unique constraint UK_EX_WORKFLOW_EXECUTION_ID dropped from EXECUTION |
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2018-08-11 03:01:27,882 INFO - changelog.xml: changesets/change_execution_unique_constraint.xml::change_execution_unique_constraint::tjeandet: Unique constraint added to EXECUTION(WORKFLOW_EXECUTION_ID, CALL_FQN, INDEX) |
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2018-08-11 03:01:27,916 INFO - changelog.xml: changesets/change_execution_unique_constraint.xml::change_execution_unique_constraint::tjeandet: Foreign key constraint added to EXECUTION (WORKFLOW_EXECUTION_ID) |
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Waiting for Cromwell... |
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2018-08-11 03:01:27,938 INFO - changelog.xml: changesets/change_execution_unique_constraint.xml::change_execution_unique_constraint::tjeandet: Column EXECUTION.INDEX renamed to IDX |
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2018-08-11 03:01:27,948 INFO - changelog.xml: changesets/change_execution_unique_constraint.xml::change_execution_unique_constraint::tjeandet: ChangeSet changesets/change_execution_unique_constraint.xml::change_execution_unique_constraint::tjeandet ran successfully in 144ms |
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2018-08-11 03:01:27,989 INFO - changelog.xml: changesets/rc.xml::rc::mcovarr: Column LOCAL_JOB.RC dropped |
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2018-08-11 03:01:28,010 INFO - changelog.xml: changesets/rc.xml::rc::mcovarr: Columns RC(INT) added to EXECUTION |
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2018-08-11 03:01:28,013 INFO - changelog.xml: changesets/rc.xml::rc::mcovarr: ChangeSet changesets/rc.xml::rc::mcovarr ran successfully in 41ms |
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2018-08-11 03:01:28,078 INFO - changelog.xml: changesets/workflow_options.xml::workflow-options::sfrazer: Columns WORKFLOW_OPTIONS(LONGTEXT) added to WORKFLOW_EXECUTION_AUX |
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2018-08-11 03:01:28,079 INFO - changelog.xml: changesets/workflow_options.xml::workflow-options::sfrazer: ChangeSet changesets/workflow_options.xml::workflow-options::sfrazer ran successfully in 24ms |
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2018-08-11 03:01:28,141 INFO - changelog.xml: changesets/jes_id_update.xml::jes_id_update::chrisl: JES_JOB.JES_ID datatype was changed to VARCHAR(100) |
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2018-08-11 03:01:28,162 INFO - changelog.xml: changesets/jes_id_update.xml::jes_id_update::chrisl: JES_JOB.JES_STATUS datatype was changed to VARCHAR(100) |
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2018-08-11 03:01:28,163 INFO - changelog.xml: changesets/jes_id_update.xml::jes_id_update::chrisl: ChangeSet changesets/jes_id_update.xml::jes_id_update::chrisl ran successfully in 50ms |
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2018-08-11 03:01:28,190 INFO - changelog.xml: changesets/optional_sge_ids.xml::optional_sge_ids::chrisl: SGE_JOB.SGE_JOB_NUMBER datatype was changed to INT |
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2018-08-11 03:01:28,190 INFO - changelog.xml: changesets/optional_sge_ids.xml::optional_sge_ids::chrisl: ChangeSet changesets/optional_sge_ids.xml::optional_sge_ids::chrisl ran successfully in 23ms |
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2018-08-11 03:01:28,217 INFO - changelog.xml: changesets/add_start_end_time_in_execution.xml::add-start-end-time-in-execution::jgentry: Columns START_DT(datetime) added to EXECUTION |
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2018-08-11 03:01:28,242 INFO - changelog.xml: changesets/add_start_end_time_in_execution.xml::add-start-end-time-in-execution::jgentry: Columns END_DT(datetime) added to EXECUTION |
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2018-08-11 03:01:28,243 INFO - changelog.xml: changesets/add_start_end_time_in_execution.xml::add-start-end-time-in-execution::jgentry: ChangeSet changesets/add_start_end_time_in_execution.xml::add-start-end-time-in-execution::jgentry ran successfully in 46ms |
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2018-08-11 03:01:28,262 INFO - changelog.xml: changesets/rename_jes_id.xml::rename-jes-id-to-jes-run-id::sfrazer: Column JES_JOB.JES_ID renamed to JES_RUN_ID |
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2018-08-11 03:01:28,262 INFO - changelog.xml: changesets/rename_jes_id.xml::rename-jes-id-to-jes-run-id::sfrazer: ChangeSet changesets/rename_jes_id.xml::rename-jes-id-to-jes-run-id::sfrazer ran successfully in 15ms |
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2018-08-11 03:01:28,307 INFO - changelog.xml: changesets/add_workflow_name.xml::workflow-name::mcovarr: Columns WORKFLOW_NAME(VARCHAR(500)) added to WORKFLOW_EXECUTION |
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2018-08-11 03:01:28,308 INFO - changelog.xml: changesets/add_workflow_name.xml::workflow-name::mcovarr: ChangeSet changesets/add_workflow_name.xml::workflow-name::mcovarr ran successfully in 40ms |
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2018-08-11 03:01:28,344 INFO - changelog.xml: changesets/top_level_output.xml::top_level_output::chrisl: Columns REPORTABLE_RESULT(TINYINT) added to SYMBOL |
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2018-08-11 03:01:28,345 INFO - changelog.xml: changesets/top_level_output.xml::top_level_output::chrisl: ChangeSet changesets/top_level_output.xml::top_level_output::chrisl ran successfully in 20ms |
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2018-08-11 03:01:28,387 INFO - changelog.xml: changesets/workflow_execution_aux_not_null.xml::workflow_execution_aux_not_null::tjeandet: Null constraint has been added to WORKFLOW_EXECUTION_AUX.WORKFLOW_EXECUTION_ID |
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2018-08-11 03:01:28,403 INFO - changelog.xml: changesets/workflow_execution_aux_not_null.xml::workflow_execution_aux_not_null::tjeandet: Null constraint has been added to WORKFLOW_EXECUTION_AUX.WDL_SOURCE |
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2018-08-11 03:01:28,425 INFO - changelog.xml: changesets/workflow_execution_aux_not_null.xml::workflow_execution_aux_not_null::tjeandet: Null constraint has been added to WORKFLOW_EXECUTION_AUX.JSON_INPUTS |
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2018-08-11 03:01:28,442 INFO - changelog.xml: changesets/workflow_execution_aux_not_null.xml::workflow_execution_aux_not_null::tjeandet: Null constraint has been added to WORKFLOW_EXECUTION_AUX.WORKFLOW_OPTIONS |
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2018-08-11 03:01:28,442 INFO - changelog.xml: changesets/workflow_execution_aux_not_null.xml::workflow_execution_aux_not_null::tjeandet: ChangeSet changesets/workflow_execution_aux_not_null.xml::workflow_execution_aux_not_null::tjeandet ran successfully in 90ms |
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2018-08-11 03:01:28,483 INFO - changelog.xml: changesets/call_result_caching.xml::call_result_caching::chrisl: Columns ALLOWS_RESULT_REUSE(TINYINT),DOCKER_IMAGE_HASH(VARCHAR(100)),RESULTS_CLONED_FROM(INT),EXECUTION_HASH(VARCHAR(100)) added to EXECUTION |
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2018-08-11 03:01:28,495 INFO - changelog.xml: changesets/call_result_caching.xml::call_result_caching::chrisl: Index HASH_INDEX created |
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2018-08-11 03:01:28,515 INFO - changelog.xml: changesets/call_result_caching.xml::call_result_caching::chrisl: Columns HASH(VARCHAR(100)) added to SYMBOL |
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2018-08-11 03:01:28,551 INFO - changelog.xml: changesets/call_result_caching.xml::call_result_caching::chrisl: Foreign key constraint added to EXECUTION (RESULTS_CLONED_FROM) |
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2018-08-11 03:01:28,551 INFO - changelog.xml: changesets/call_result_caching.xml::call_result_caching::chrisl: ChangeSet changesets/call_result_caching.xml::call_result_caching::chrisl ran successfully in 90ms |
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2018-08-11 03:01:28,590 INFO - changelog.xml: changesets/events_table.xml::execution_event_table::chrisl: Table EXECUTION_EVENT created |
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2018-08-11 03:01:28,616 INFO - changelog.xml: changesets/events_table.xml::execution_event_table::chrisl: Foreign key constraint added to EXECUTION_EVENT (EXECUTION_ID) |
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2018-08-11 03:01:28,628 INFO - changelog.xml: changesets/events_table.xml::execution_event_table::chrisl: Unique constraint added to EXECUTION_EVENT(EXECUTION_ID, DESCRIPTION) |
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2018-08-11 03:01:28,629 INFO - changelog.xml: changesets/events_table.xml::execution_event_table::chrisl: ChangeSet changesets/events_table.xml::execution_event_table::chrisl ran successfully in 68ms |
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2018-08-11 03:01:28,660 INFO - changelog.xml: changesets/events_table.xml::execution_event_table_milliseconds::chrisl: EXECUTION_EVENT.START_DT datatype was changed to DATETIME(6) |
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2018-08-11 03:01:28,689 INFO - changelog.xml: changesets/events_table.xml::execution_event_table_milliseconds::chrisl: EXECUTION_EVENT.END_DT datatype was changed to DATETIME(6) |
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2018-08-11 03:01:28,690 INFO - changelog.xml: changesets/events_table.xml::execution_event_table_milliseconds::chrisl: ChangeSet changesets/events_table.xml::execution_event_table_milliseconds::chrisl ran successfully in 57ms |
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2018-08-11 03:01:28,698 INFO - changelog.xml: changesets/sync_not_null_constraints.xml::job_not_null_columns::kshakir: Null constraint dropped from JES_JOB.JES_RUN_ID |
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2018-08-11 03:01:28,703 INFO - changelog.xml: changesets/sync_not_null_constraints.xml::job_not_null_columns::kshakir: Null constraint dropped from JES_JOB.JES_STATUS |
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2018-08-11 03:01:28,710 INFO - changelog.xml: changesets/sync_not_null_constraints.xml::job_not_null_columns::kshakir: Null constraint dropped from SGE_JOB.SGE_JOB_NUMBER |
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2018-08-11 03:01:28,710 INFO - changelog.xml: changesets/sync_not_null_constraints.xml::job_not_null_columns::kshakir: ChangeSet changesets/sync_not_null_constraints.xml::job_not_null_columns::kshakir ran successfully in 16ms |
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2018-08-11 03:01:28,748 INFO - changelog.xml: changesets/sync_not_null_constraints.xml::events_end_dt_not_null_milliseconds::kshakir: Null constraint has been added to EXECUTION_EVENT.END_DT |
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2018-08-11 03:01:28,748 INFO - changelog.xml: changesets/sync_not_null_constraints.xml::events_end_dt_not_null_milliseconds::kshakir: ChangeSet changesets/sync_not_null_constraints.xml::events_end_dt_not_null_milliseconds::kshakir ran successfully in 27ms |
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2018-08-11 03:01:28,763 INFO - changelog.xml: changesets/sge_job_execution_unique_key.xml::sge_job_execution_unique_key::kshakir: Unique constraint added to SGE_JOB(EXECUTION_ID) |
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2018-08-11 03:01:28,765 INFO - changelog.xml: changesets/sge_job_execution_unique_key.xml::sge_job_execution_unique_key::kshakir: ChangeSet changesets/sge_job_execution_unique_key.xml::sge_job_execution_unique_key::kshakir ran successfully in 13ms |
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2018-08-11 03:01:28,805 INFO - changelog.xml: changesets/add_attempt_in_execution.xml::add-attempt-in-execution::tjeandet: Columns ATTEMPT(INT) added to EXECUTION |
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2018-08-11 03:01:28,831 INFO - changelog.xml: changesets/add_attempt_in_execution.xml::add-attempt-in-execution::tjeandet: Null constraint has been added to EXECUTION.ATTEMPT |
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2018-08-11 03:01:28,839 INFO - changelog.xml: changesets/add_attempt_in_execution.xml::add-attempt-in-execution::tjeandet: Foreign key FK_EXECUTION_WORKFLOW dropped |
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2018-08-11 03:01:28,849 INFO - changelog.xml: changesets/add_attempt_in_execution.xml::add-attempt-in-execution::tjeandet: Unique constraint UK_WORKFLOW_CALL_INDEX dropped from EXECUTION |
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2018-08-11 03:01:28,859 INFO - changelog.xml: changesets/add_attempt_in_execution.xml::add-attempt-in-execution::tjeandet: Unique constraint added to EXECUTION(WORKFLOW_EXECUTION_ID, CALL_FQN, IDX, ATTEMPT) |
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2018-08-11 03:01:28,896 INFO - changelog.xml: changesets/add_attempt_in_execution.xml::add-attempt-in-execution::tjeandet: Foreign key constraint added to EXECUTION (WORKFLOW_EXECUTION_ID) |
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2018-08-11 03:01:28,897 INFO - changelog.xml: changesets/add_attempt_in_execution.xml::add-attempt-in-execution::tjeandet: ChangeSet changesets/add_attempt_in_execution.xml::add-attempt-in-execution::tjeandet ran successfully in 117ms |
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2018-08-11 03:01:28,920 INFO - changelog.xml: changesets/execution_backend_info.xml::CREATE_EXECUTION_INFO::mcovarr: Table EXECUTION_INFO created |
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2018-08-11 03:01:28,921 INFO - changelog.xml: changesets/execution_backend_info.xml::CREATE_EXECUTION_INFO::mcovarr: ChangeSet changesets/execution_backend_info.xml::CREATE_EXECUTION_INFO::mcovarr ran successfully in 16ms |
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2018-08-11 03:01:28,974 INFO - changelog.xml: changesets/execution_backend_info.xml::add_foreign_key_constraints::mcovarr: Foreign key constraint added to EXECUTION_INFO (EXECUTION_ID) |
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2018-08-11 03:01:28,974 INFO - changelog.xml: changesets/execution_backend_info.xml::add_foreign_key_constraints::mcovarr: ChangeSet changesets/execution_backend_info.xml::add_foreign_key_constraints::mcovarr ran successfully in 32ms |
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2018-08-11 03:01:29,005 INFO - changelog.xml: changesets/execution_backend_info.xml::add_backend_type_column::mcovarr: Columns BACKEND_TYPE(VARCHAR(255)) added to EXECUTION |
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2018-08-11 03:01:29,005 INFO - changelog.xml: changesets/execution_backend_info.xml::add_backend_type_column::mcovarr: ChangeSet changesets/execution_backend_info.xml::add_backend_type_column::mcovarr ran successfully in 24ms |
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2018-08-11 03:01:29,063 INFO - changelog.xml: changesets/execution_backend_info.xml::insert_data_from_backend_tables::mcovarr: Custom SQL executed |
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2018-08-11 03:01:29,064 INFO - changelog.xml: changesets/execution_backend_info.xml::insert_data_from_backend_tables::mcovarr: ChangeSet changesets/execution_backend_info.xml::insert_data_from_backend_tables::mcovarr ran successfully in 56ms |
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2018-08-11 03:01:29,128 INFO - changelog.xml: changesets/execution_backend_info.xml::set_backend_type::mcovarr: Custom SQL executed |
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2018-08-11 03:01:29,134 INFO - changelog.xml: changesets/execution_backend_info.xml::set_backend_type::mcovarr: ChangeSet changesets/execution_backend_info.xml::set_backend_type::mcovarr ran successfully in 50ms |
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2018-08-11 03:01:29,155 INFO - changelog.xml: changesets/execution_backend_info.xml::drop_job_tables::mcovarr: Table JES_JOB dropped |
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2018-08-11 03:01:29,160 INFO - changelog.xml: changesets/execution_backend_info.xml::drop_job_tables::mcovarr: Table SGE_JOB dropped |
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2018-08-11 03:01:29,167 INFO - changelog.xml: changesets/execution_backend_info.xml::drop_job_tables::mcovarr: Table LOCAL_JOB dropped |
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2018-08-11 03:01:29,168 INFO - changelog.xml: changesets/execution_backend_info.xml::drop_job_tables::mcovarr: ChangeSet changesets/execution_backend_info.xml::drop_job_tables::mcovarr ran successfully in 22ms |
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2018-08-11 03:01:29,198 INFO - changelog.xml: changesets/execution_backend_info.xml::execution_info_uniqueness_constraint::mcovarr: Unique constraint added to EXECUTION_INFO(EXECUTION_ID, INFO_KEY) |
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2018-08-11 03:01:29,198 INFO - changelog.xml: changesets/execution_backend_info.xml::execution_info_uniqueness_constraint::mcovarr: ChangeSet changesets/execution_backend_info.xml::execution_info_uniqueness_constraint::mcovarr ran successfully in 13ms |
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2018-08-11 03:01:29,258 INFO - changelog.xml: changesets/execution_backend_info.xml::execution_backend_type_not_null::mcovarr: Null constraint has been added to EXECUTION.BACKEND_TYPE |
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2018-08-11 03:01:29,259 INFO - changelog.xml: changesets/execution_backend_info.xml::execution_backend_type_not_null::mcovarr: ChangeSet changesets/execution_backend_info.xml::execution_backend_type_not_null::mcovarr ran successfully in 31ms |
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2018-08-11 03:01:29,292 INFO - changelog.xml: changesets/runtime_attributes_table.xml::runtime-attributes-table::tjeandet: Table RUNTIME_ATTRIBUTES created |
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2018-08-11 03:01:29,321 INFO - changelog.xml: changesets/runtime_attributes_table.xml::runtime-attributes-table::tjeandet: Foreign key constraint added to RUNTIME_ATTRIBUTES (EXECUTION_ID) |
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2018-08-11 03:01:29,330 INFO - changelog.xml: changesets/runtime_attributes_table.xml::runtime-attributes-table::tjeandet: Unique constraint added to RUNTIME_ATTRIBUTES(EXECUTION_ID, ATTRIBUTE_NAME) |
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2018-08-11 03:01:29,332 INFO - changelog.xml: changesets/runtime_attributes_table.xml::runtime-attributes-table::tjeandet: ChangeSet changesets/runtime_attributes_table.xml::runtime-attributes-table::tjeandet ran successfully in 70ms |
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2018-08-11 03:01:29,385 INFO - changelog.xml: changesets/failure_table.xml::failure_table::chrisl: Table FAILURE_EVENT created |
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2018-08-11 03:01:29,407 INFO - changelog.xml: changesets/failure_table.xml::failure_table::chrisl: Foreign key constraint added to FAILURE_EVENT (EXECUTION_ID) |
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2018-08-11 03:01:29,436 INFO - changelog.xml: changesets/failure_table.xml::failure_table::chrisl: Foreign key constraint added to FAILURE_EVENT (WORKFLOW_EXECUTION_ID) |
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2018-08-11 03:01:29,437 INFO - changelog.xml: changesets/failure_table.xml::failure_table::chrisl: ChangeSet changesets/failure_table.xml::failure_table::chrisl ran successfully in 82ms |
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2018-08-11 03:01:29,472 INFO - changelog.xml: changesets/failure_table.xml::execution_event_table_milliseconds::chrisl: FAILURE_EVENT.EVENT_TIMESTAMP datatype was changed to DATETIME(6) |
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2018-08-11 03:01:29,473 INFO - changelog.xml: changesets/failure_table.xml::execution_event_table_milliseconds::chrisl: ChangeSet changesets/failure_table.xml::execution_event_table_milliseconds::chrisl ran successfully in 28ms |
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2018-08-11 03:01:29,493 INFO - changelog.xml: changesets/metadata_journal.xml::metadata_journal::mcovarr: Table METADATA_JOURNAL created |
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2018-08-11 03:01:29,493 INFO - changelog.xml: changesets/metadata_journal.xml::metadata_journal::mcovarr: ChangeSet changesets/metadata_journal.xml::metadata_journal::mcovarr ran successfully in 13ms |
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2018-08-11 03:01:29,513 INFO - changelog.xml: changesets/metadata_journal.xml::metadata_workflow_index::mcovarr: Index METADATA_WORKFLOW_IDX created |
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2018-08-11 03:01:29,513 INFO - changelog.xml: changesets/metadata_journal.xml::metadata_workflow_index::mcovarr: ChangeSet changesets/metadata_journal.xml::metadata_workflow_index::mcovarr ran successfully in 11ms |
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2018-08-11 03:01:29,546 INFO - changelog.xml: changesets/metadata_journal.xml::metadata_job_index::mcovarr: Index METADATA_JOB_IDX created |
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2018-08-11 03:01:29,547 INFO - changelog.xml: changesets/metadata_journal.xml::metadata_job_index::mcovarr: ChangeSet changesets/metadata_journal.xml::metadata_job_index::mcovarr ran successfully in 31ms |
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2018-08-11 03:01:29,583 INFO - changelog.xml: changesets/metadata_journal.xml::metadata_job_and_key_index::mcovarr: Index METADATA_JOB_AND_KEY_IDX created |
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2018-08-11 03:01:29,584 INFO - changelog.xml: changesets/metadata_journal.xml::metadata_job_and_key_index::mcovarr: ChangeSet changesets/metadata_journal.xml::metadata_job_and_key_index::mcovarr ran successfully in 22ms |
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2018-08-11 03:01:29,645 INFO - changelog.xml: changesets/metadata_typed_values.xml::metadata_typed_values::tjeandet: Columns METADATA_VALUE_TYPE(VARCHAR(10)) added to METADATA_JOURNAL |
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2018-08-11 03:01:29,651 INFO - changelog.xml: changesets/metadata_typed_values.xml::metadata_typed_values::tjeandet: ChangeSet changesets/metadata_typed_values.xml::metadata_typed_values::tjeandet ran successfully in 33ms |
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2018-08-11 03:01:29,727 INFO - changelog.xml: changesets/workflow_metadata_summary.xml::metadata_journal_id_int_to_big_int::kshakir: METADATA_JOURNAL.METADATA_JOURNAL_ID datatype was changed to BIGINT |
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2018-08-11 03:01:29,763 INFO - changelog.xml: changesets/workflow_metadata_summary.xml::metadata_journal_id_int_to_big_int::kshakir: Auto-increment added to METADATA_JOURNAL.METADATA_JOURNAL_ID |
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2018-08-11 03:01:29,763 INFO - changelog.xml: changesets/workflow_metadata_summary.xml::metadata_journal_id_int_to_big_int::kshakir: ChangeSet changesets/workflow_metadata_summary.xml::metadata_journal_id_int_to_big_int::kshakir ran successfully in 87ms |
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2018-08-11 03:01:29,807 INFO - changelog.xml: changesets/workflow_metadata_summary.xml::workflow_metadata_summary::mcovarr: Table WORKFLOW_METADATA_SUMMARY created |
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2018-08-11 03:01:29,808 INFO - changelog.xml: changesets/workflow_metadata_summary.xml::workflow_metadata_summary::mcovarr: ChangeSet changesets/workflow_metadata_summary.xml::workflow_metadata_summary::mcovarr ran successfully in 30ms |
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2018-08-11 03:01:29,840 INFO - changelog.xml: changesets/workflow_metadata_summary.xml::workflow_metadata_uuid_idx::mcovarr: Unique constraint added to WORKFLOW_METADATA_SUMMARY(WORKFLOW_EXECUTION_UUID) |
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2018-08-11 03:01:29,840 INFO - changelog.xml: changesets/workflow_metadata_summary.xml::workflow_metadata_uuid_idx::mcovarr: ChangeSet changesets/workflow_metadata_summary.xml::workflow_metadata_uuid_idx::mcovarr ran successfully in 11ms |
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2018-08-11 03:01:29,890 INFO - changelog.xml: changesets/workflow_metadata_summary.xml::workflow_metadata_name_idx::mcovarr: Index WORKFLOW_METADATA_NAME_IDX created |
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2018-08-11 03:01:29,892 INFO - changelog.xml: changesets/workflow_metadata_summary.xml::workflow_metadata_name_idx::mcovarr: ChangeSet changesets/workflow_metadata_summary.xml::workflow_metadata_name_idx::mcovarr ran successfully in 23ms |
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2018-08-11 03:01:29,949 INFO - changelog.xml: changesets/workflow_metadata_summary.xml::workflow_metadata_status_idx::mcovarr: Index WORKFLOW_METADATA_STATUS_IDX created |
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2018-08-11 03:01:29,950 INFO - changelog.xml: changesets/workflow_metadata_summary.xml::workflow_metadata_status_idx::mcovarr: ChangeSet changesets/workflow_metadata_summary.xml::workflow_metadata_status_idx::mcovarr ran successfully in 11ms |
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2018-08-11 03:01:29,984 INFO - changelog.xml: changesets/metadata_journal_subsecond_timestamp.xml::metadata_journal_subsecond_timestamp::mcovarr: METADATA_JOURNAL.METADATA_TIMESTAMP datatype was changed to DATETIME(6) |
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2018-08-11 03:01:29,985 INFO - changelog.xml: changesets/metadata_journal_subsecond_timestamp.xml::metadata_journal_subsecond_timestamp::mcovarr: ChangeSet changesets/metadata_journal_subsecond_timestamp.xml::metadata_journal_subsecond_timestamp::mcovarr ran successfully in 33ms |
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2018-08-11 03:01:30,023 INFO - changelog.xml: changesets/metadata_journal_subsecond_timestamp.xml::metadata_journal_timestamp_not_null::mcovarr: Null constraint has been added to METADATA_JOURNAL.METADATA_TIMESTAMP |
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2018-08-11 03:01:30,023 INFO - changelog.xml: changesets/metadata_journal_subsecond_timestamp.xml::metadata_journal_timestamp_not_null::mcovarr: ChangeSet changesets/metadata_journal_subsecond_timestamp.xml::metadata_journal_timestamp_not_null::mcovarr ran successfully in 30ms |
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2018-08-11 03:01:30,074 INFO - changelog.xml: changesets/workflow_store.xml::WORKFLOW_STORE::chrisl: Table WORKFLOW_STORE created |
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2018-08-11 03:01:30,075 INFO - changelog.xml: changesets/workflow_store.xml::WORKFLOW_STORE::chrisl: ChangeSet changesets/workflow_store.xml::WORKFLOW_STORE::chrisl ran successfully in 32ms |
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2018-08-11 03:01:30,119 INFO - changelog.xml: changesets/workflow_store.xml::workflow_store_uuid_index::kshakir: Unique constraint added to WORKFLOW_STORE(WORKFLOW_UUID) |
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2018-08-11 03:01:30,119 INFO - changelog.xml: changesets/workflow_store.xml::workflow_store_uuid_index::kshakir: ChangeSet changesets/workflow_store.xml::workflow_store_uuid_index::kshakir ran successfully in 18ms |
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2018-08-11 03:01:30,159 INFO - changelog.xml: changesets/workflow_store.xml::workflow_store_state_index::chrisl: Index WORKFLOW_STORE_STATE_IDX created |
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2018-08-11 03:01:30,159 INFO - changelog.xml: changesets/workflow_store.xml::workflow_store_state_index::chrisl: ChangeSet changesets/workflow_store.xml::workflow_store_state_index::chrisl ran successfully in 16ms |
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2018-08-11 03:01:30,212 INFO - changelog.xml: changesets/backend_KV_Store.xml::BACKEND_KV_STORE::rmunshi: Table BACKEND_KV_STORE created |
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2018-08-11 03:01:30,217 INFO - changelog.xml: changesets/backend_KV_Store.xml::BACKEND_KV_STORE::rmunshi: ChangeSet changesets/backend_KV_Store.xml::BACKEND_KV_STORE::rmunshi ran successfully in 38ms |
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2018-08-11 03:01:30,263 INFO - changelog.xml: changesets/backend_KV_Store.xml::backend_KV_store_job_key_constraint::rmunshi: Unique constraint added to BACKEND_KV_STORE(WORKFLOW_EXECUTION_UUID, CALL_FQN, JOB_SCATTER_INDEX, JOB_RETRY_ATTEMPT, STORE_KEY) |
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2018-08-11 03:01:30,264 INFO - changelog.xml: changesets/backend_KV_Store.xml::backend_KV_store_job_key_constraint::rmunshi: ChangeSet changesets/backend_KV_Store.xml::backend_KV_store_job_key_constraint::rmunshi ran successfully in 19ms |
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2018-08-11 03:01:30,296 INFO - changelog.xml: changesets/job_store.xml::JOB_STORE::chrisl: Table JOB_STORE created |
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2018-08-11 03:01:30,296 INFO - changelog.xml: changesets/job_store.xml::JOB_STORE::chrisl: ChangeSet changesets/job_store.xml::JOB_STORE::chrisl ran successfully in 14ms |
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2018-08-11 03:01:30,353 INFO - changelog.xml: changesets/job_store.xml::job_store_uuid_index::chrisl: Index JOB_STORE_UUID_IDX created |
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2018-08-11 03:01:30,353 INFO - changelog.xml: changesets/job_store.xml::job_store_uuid_index::chrisl: ChangeSet changesets/job_store.xml::job_store_uuid_index::chrisl ran successfully in 19ms |
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2018-08-11 03:01:30,409 INFO - changelog.xml: changesets/job_store.xml::job_store_jobkey_index::chrisl: Unique constraint added to JOB_STORE(WORKFLOW_UUID, CALL_FQN, JOB_SCATTER_INDEX, JOB_RETRY_ATTEMPT) |
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2018-08-11 03:01:30,409 INFO - changelog.xml: changesets/job_store.xml::job_store_jobkey_index::chrisl: ChangeSet changesets/job_store.xml::job_store_jobkey_index::chrisl ran successfully in 13ms |
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2018-08-11 03:01:30,439 INFO - changelog.xml: changesets/callcaching.xml::call_caching_result_metainfo::chrisl: Table CALL_CACHING_RESULT_METAINFO created |
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2018-08-11 03:01:30,440 INFO - changelog.xml: changesets/callcaching.xml::call_caching_result_metainfo::chrisl: ChangeSet changesets/callcaching.xml::call_caching_result_metainfo::chrisl ran successfully in 15ms |
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2018-08-11 03:01:30,480 INFO - changelog.xml: changesets/callcaching.xml::call_caching_result_metainfo_uniqueness::chrisl: Unique constraint added to CALL_CACHING_RESULT_METAINFO(WORKFLOW_UUID, CALL_FQN, JOB_SCATTER_INDEX) |
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2018-08-11 03:01:30,482 INFO - changelog.xml: changesets/callcaching.xml::call_caching_result_metainfo_uniqueness::chrisl: ChangeSet changesets/callcaching.xml::call_caching_result_metainfo_uniqueness::chrisl ran successfully in 24ms |
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2018-08-11 03:01:30,524 INFO - changelog.xml: changesets/callcaching.xml::call_caching_hashes::chrisl: Table CALL_CACHING_HASH created |
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2018-08-11 03:01:30,525 INFO - changelog.xml: changesets/callcaching.xml::call_caching_hashes::chrisl: ChangeSet changesets/callcaching.xml::call_caching_hashes::chrisl ran successfully in 21ms |
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2018-08-11 03:01:30,568 INFO - changelog.xml: changesets/callcaching.xml::call_caching_result_hashes_uniqueness::chrisl: Unique constraint added to CALL_CACHING_HASH(HASH_KEY, RESULT_METAINFO_ID) |
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2018-08-11 03:01:30,568 INFO - changelog.xml: changesets/callcaching.xml::call_caching_result_hashes_uniqueness::chrisl: ChangeSet changesets/callcaching.xml::call_caching_result_hashes_uniqueness::chrisl ran successfully in 20ms |
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2018-08-11 03:01:30,618 INFO - changelog.xml: changesets/callcaching.xml::call_caching_result_hashes_uniqueness_foreign_key::chrisl: Foreign key constraint added to CALL_CACHING_HASH (RESULT_METAINFO_ID) |
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2018-08-11 03:01:30,618 INFO - changelog.xml: changesets/callcaching.xml::call_caching_result_hashes_uniqueness_foreign_key::chrisl: ChangeSet changesets/callcaching.xml::call_caching_result_hashes_uniqueness_foreign_key::chrisl ran successfully in 36ms |
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2018-08-11 03:01:30,634 INFO - changelog.xml: changesets/callcaching.xml::call_caching_result_simpletons::chrisl: Table CALL_CACHING_RESULT_SIMPLETON created |
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2018-08-11 03:01:30,635 INFO - changelog.xml: changesets/callcaching.xml::call_caching_result_simpletons::chrisl: ChangeSet changesets/callcaching.xml::call_caching_result_simpletons::chrisl ran successfully in 14ms |
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2018-08-11 03:01:30,685 INFO - changelog.xml: changesets/callcaching.xml::call_caching_result_simpletons_uniqueness::chrisl: Unique constraint added to CALL_CACHING_RESULT_SIMPLETON(SIMPLETON_KEY, RESULT_METAINFO_ID) |
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2018-08-11 03:01:30,692 INFO - changelog.xml: changesets/callcaching.xml::call_caching_result_simpletons_uniqueness::chrisl: ChangeSet changesets/callcaching.xml::call_caching_result_simpletons_uniqueness::chrisl ran successfully in 17ms |
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2018-08-11 03:01:30,763 INFO - changelog.xml: changesets/callcaching.xml::call_caching_result_simpletons_foreign_key::chrisl: Foreign key constraint added to CALL_CACHING_RESULT_SIMPLETON (RESULT_METAINFO_ID) |
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2018-08-11 03:01:30,763 INFO - changelog.xml: changesets/callcaching.xml::call_caching_result_simpletons_foreign_key::chrisl: ChangeSet changesets/callcaching.xml::call_caching_result_simpletons_foreign_key::chrisl ran successfully in 35ms |
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2018-08-11 03:01:30,791 INFO - changelog.xml: changesets/call_caching_allow_result_reuse_fix.xml::call_caching_fix_boolean::mcovarr: CALL_CACHING_RESULT_METAINFO.ALLOW_RESULT_REUSE datatype was changed to TINYINT |
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2018-08-11 03:01:30,792 INFO - changelog.xml: changesets/call_caching_allow_result_reuse_fix.xml::call_caching_fix_boolean::mcovarr: ChangeSet changesets/call_caching_allow_result_reuse_fix.xml::call_caching_fix_boolean::mcovarr ran successfully in 26ms |
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2018-08-11 03:01:30,804 INFO - changelog.xml: changesets/call_caching_allow_result_reuse_fix.xml::call_caching_reuse_default::mcovarr: Default value added to CALL_CACHING_RESULT_METAINFO.ALLOW_RESULT_REUSE |
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2018-08-11 03:01:30,805 INFO - changelog.xml: changesets/call_caching_allow_result_reuse_fix.xml::call_caching_reuse_default::mcovarr: ChangeSet changesets/call_caching_allow_result_reuse_fix.xml::call_caching_reuse_default::mcovarr ran successfully in 11ms |
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2018-08-11 03:01:30,861 INFO - changelog.xml: changesets/job_store_simpletons.xml::job_store_result_simpletons::mcovarr: Table JOB_STORE_RESULT_SIMPLETON created |
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2018-08-11 03:01:30,861 INFO - changelog.xml: changesets/job_store_simpletons.xml::job_store_result_simpletons::mcovarr: ChangeSet changesets/job_store_simpletons.xml::job_store_result_simpletons::mcovarr ran successfully in 20ms |
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2018-08-11 03:01:30,892 INFO - changelog.xml: changesets/job_store_simpletons.xml::job_store_result_simpletons_uniqueness::mcovarr: Unique constraint added to JOB_STORE_RESULT_SIMPLETON(SIMPLETON_KEY, JOB_STORE_ID) |
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2018-08-11 03:01:30,893 INFO - changelog.xml: changesets/job_store_simpletons.xml::job_store_result_simpletons_uniqueness::mcovarr: ChangeSet changesets/job_store_simpletons.xml::job_store_result_simpletons_uniqueness::mcovarr ran successfully in 16ms |
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2018-08-11 03:01:30,952 INFO - changelog.xml: changesets/job_store_simpletons.xml::job_store_result_simpletons_foreign_key::mcovarr: Foreign key constraint added to JOB_STORE_RESULT_SIMPLETON (JOB_STORE_ID) |
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2018-08-11 03:01:30,955 INFO - changelog.xml: changesets/job_store_simpletons.xml::job_store_result_simpletons_foreign_key::mcovarr: ChangeSet changesets/job_store_simpletons.xml::job_store_result_simpletons_foreign_key::mcovarr ran successfully in 41ms |
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2018-08-11 03:01:30,987 INFO - changelog.xml: changesets/job_store_simpletons.xml::job_store_remove_job_output::mcovarr: Column JOB_STORE.JOB_OUTPUT dropped |
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2018-08-11 03:01:30,988 INFO - changelog.xml: changesets/job_store_simpletons.xml::job_store_remove_job_output::mcovarr: ChangeSet changesets/job_store_simpletons.xml::job_store_remove_job_output::mcovarr ran successfully in 24ms |
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2018-08-11 03:01:31,029 INFO - changelog.xml: changesets/restart_and_recover_migration.xml::WORKFLOW_STORE_MIGRATION::mcovarr: Custom SQL executed |
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2018-08-11 03:01:31,032 INFO - changelog.xml: changesets/restart_and_recover_migration.xml::WORKFLOW_STORE_MIGRATION::mcovarr: ChangeSet changesets/restart_and_recover_migration.xml::WORKFLOW_STORE_MIGRATION::mcovarr ran successfully in 26ms |
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2018-08-11 03:01:31,080 INFO - changelog.xml: changesets/restart_and_recover_migration.xml::JOB_STORE_MIGRATION::mcovarr: Custom SQL executed |
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2018-08-11 03:01:31,089 INFO - changelog.xml: changesets/restart_and_recover_migration.xml::JOB_STORE_MIGRATION::mcovarr: ChangeSet changesets/restart_and_recover_migration.xml::JOB_STORE_MIGRATION::mcovarr ran successfully in 44ms |
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2018-08-11 03:01:31,228 INFO - changelog.xml: changesets/restart_and_recover_migration.xml::JOB_STORE_RESULT_SIMPLETON_VALUE_NULLABLE::mcovarr: Null constraint dropped from JOB_STORE_RESULT_SIMPLETON.SIMPLETON_VALUE |
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2018-08-11 03:01:31,229 INFO - changelog.xml: changesets/restart_and_recover_migration.xml::JOB_STORE_RESULT_SIMPLETON_VALUE_NULLABLE::mcovarr: ChangeSet changesets/restart_and_recover_migration.xml::JOB_STORE_RESULT_SIMPLETON_VALUE_NULLABLE::mcovarr ran successfully in 117ms |
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2018-08-11 03:01:31,252 INFO - changelog.xml: changesets/restart_and_recover_migration.xml::JOB_STORE_RESULT_SIMPLETON_MIGRATION::mcovarr: WORKFLOW_EXECUTION + EXECUTION + SYMBOL + JOB_STORE -> JOB_STORE_RESULT_SIMPLETON migration complete. |
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2018-08-11 03:01:31,260 INFO - changelog.xml: changesets/restart_and_recover_migration.xml::JOB_STORE_RESULT_SIMPLETON_MIGRATION::mcovarr: ChangeSet changesets/restart_and_recover_migration.xml::JOB_STORE_RESULT_SIMPLETON_MIGRATION::mcovarr ran successfully in 20ms |
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2018-08-11 03:01:31,285 INFO - changelog.xml: changesets/restart_and_recover_migration.xml::BACKEND_KV_STORE_MIGRATION::mcovarr: Custom SQL executed |
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2018-08-11 03:01:31,287 INFO - changelog.xml: changesets/restart_and_recover_migration.xml::BACKEND_KV_STORE_MIGRATION::mcovarr: ChangeSet changesets/restart_and_recover_migration.xml::BACKEND_KV_STORE_MIGRATION::mcovarr ran successfully in 17ms |
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2018-08-11 03:01:31,350 INFO - changelog.xml: changesets/restart_and_recover_migration.xml::WORKFLOW_OPTIONS_RENAME_MIGRATION::mcovarr: Workflow option renaming migration complete. |
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2018-08-11 03:01:31,351 INFO - changelog.xml: changesets/restart_and_recover_migration.xml::WORKFLOW_OPTIONS_RENAME_MIGRATION::mcovarr: ChangeSet changesets/restart_and_recover_migration.xml::WORKFLOW_OPTIONS_RENAME_MIGRATION::mcovarr ran successfully in 15ms |
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2018-08-11 03:01:31,384 INFO - changelog.xml: changesets/summary_status_table.xml::summary_status_table::kshakir: Table SUMMARY_STATUS created |
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2018-08-11 03:01:31,384 INFO - changelog.xml: changesets/summary_status_table.xml::summary_status_table::kshakir: ChangeSet changesets/summary_status_table.xml::summary_status_table::kshakir ran successfully in 18ms |
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2018-08-11 03:01:31,398 INFO - changelog.xml: changesets/summary_status_table.xml::summary_status_summarized_table_name_index::kshakir: Unique constraint added to SUMMARY_STATUS(SUMMARY_TABLE_NAME, SUMMARIZED_TABLE_NAME) |
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2018-08-11 03:01:31,398 INFO - changelog.xml: changesets/summary_status_table.xml::summary_status_summarized_table_name_index::kshakir: ChangeSet changesets/summary_status_table.xml::summary_status_summarized_table_name_index::kshakir ran successfully in 11ms |
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2018-08-11 03:01:31,436 INFO - changelog.xml: changesets/standardize_column_names.xml::workflow_execution_uuid::rmunshi: Column CALL_CACHING_RESULT_METAINFO.WORKFLOW_UUID renamed to WORKFLOW_EXECUTION_UUID |
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2018-08-11 03:01:31,454 INFO - changelog.xml: changesets/standardize_column_names.xml::workflow_execution_uuid::rmunshi: Column WORKFLOW_STORE.WORKFLOW_UUID renamed to WORKFLOW_EXECUTION_UUID |
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2018-08-11 03:01:31,472 INFO - changelog.xml: changesets/standardize_column_names.xml::workflow_execution_uuid::rmunshi: Column JOB_STORE.WORKFLOW_UUID renamed to WORKFLOW_EXECUTION_UUID |
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2018-08-11 03:01:31,472 INFO - changelog.xml: changesets/standardize_column_names.xml::workflow_execution_uuid::rmunshi: ChangeSet changesets/standardize_column_names.xml::workflow_execution_uuid::rmunshi ran successfully in 52ms |
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2018-08-11 03:01:31,513 INFO - changelog.xml: changesets/standardize_column_names.xml::call_job_identifiers::rmunshi: Column METADATA_JOURNAL.METADATA_CALL_FQN renamed to CALL_FQN |
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2018-08-11 03:01:31,528 INFO - changelog.xml: changesets/standardize_column_names.xml::call_job_identifiers::rmunshi: Column METADATA_JOURNAL.METADATA_CALL_INDEX renamed to JOB_SCATTER_INDEX |
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2018-08-11 03:01:31,543 INFO - changelog.xml: changesets/standardize_column_names.xml::call_job_identifiers::rmunshi: Column METADATA_JOURNAL.METADATA_CALL_ATTEMPT renamed to JOB_RETRY_ATTEMPT |
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2018-08-11 03:01:31,543 INFO - changelog.xml: changesets/standardize_column_names.xml::call_job_identifiers::rmunshi: ChangeSet changesets/standardize_column_names.xml::call_job_identifiers::rmunshi ran successfully in 59ms |
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2018-08-11 03:01:31,739 INFO - changelog.xml: changesets/embiggen_metadata_value.xml::entry_or_journal_existence_xor::mcovarr: ChangeSet changesets/embiggen_metadata_value.xml::entry_or_journal_existence_xor::mcovarr ran successfully in 171ms |
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2018-08-11 03:01:31,866 INFO - changelog.xml: changesets/embiggen_metadata_value.xml::embiggen_metadata_entry::mcovarr: Marking ChangeSet: changesets/embiggen_metadata_value.xml::embiggen_metadata_entry::mcovarr ran despite precondition failure due to onFail='MARK_RAN': |
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changelog.xml : Table cromwell_test.METADATA_ENTRY does not exist |
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2018-08-11 03:01:31,951 INFO - changelog.xml: changesets/embiggen_metadata_value.xml::embiggen_metadata_journal::mcovarr: METADATA_JOURNAL.METADATA_VALUE datatype was changed to LONGTEXT |
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2018-08-11 03:01:31,952 INFO - changelog.xml: changesets/embiggen_metadata_value.xml::embiggen_metadata_journal::mcovarr: ChangeSet changesets/embiggen_metadata_value.xml::embiggen_metadata_journal::mcovarr ran successfully in 55ms |
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2018-08-11 03:01:32,014 INFO - changelog.xml: changesets/metadata_migration.xml::setup_metadata_migration::tjeandet: SQL in file migration/metadata/CreateAndLoadTmpExecutionMigration.sql executed |
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2018-08-11 03:01:32,014 INFO - changelog.xml: changesets/metadata_migration.xml::setup_metadata_migration::tjeandet: ChangeSet changesets/metadata_migration.xml::setup_metadata_migration::tjeandet ran successfully in 60ms |
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2018-08-11 03:01:32,074 INFO - changelog.xml: changesets/metadata_migration.xml::create_tmp_symbol_for_inputs::tjeandet: SQL in file migration/metadata/CreateTmpSymbolTable.sql executed |
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2018-08-11 03:01:32,075 INFO - changelog.xml: changesets/metadata_migration.xml::create_tmp_symbol_for_inputs::tjeandet: ChangeSet changesets/metadata_migration.xml::create_tmp_symbol_for_inputs::tjeandet ran successfully in 44ms |
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2018-08-11 03:01:32,100 INFO - changelog.xml: changesets/metadata_migration.xml::load_tmp_symbol_for_inputs::tjeandet: SQL in file migration/metadata/LoadInputSymbols.sql executed |
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2018-08-11 03:01:32,102 INFO - changelog.xml: changesets/metadata_migration.xml::load_tmp_symbol_for_inputs::tjeandet: ChangeSet changesets/metadata_migration.xml::load_tmp_symbol_for_inputs::tjeandet ran successfully in 18ms |
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2018-08-11 03:01:32,146 INFO - Running migration InputSymbolTableMigration with a read batch size of 100000 and a write batch size of 100000 |
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2018-08-11 03:01:32,319 INFO - [InputSymbolTableMigration] 100% |
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2018-08-11 03:01:32,321 INFO - changelog.xml: changesets/metadata_migration.xml::input_symbol_table_migration::tjeandet: Inputs from Symbol Table migration complete. |
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2018-08-11 03:01:32,333 INFO - changelog.xml: changesets/metadata_migration.xml::input_symbol_table_migration::tjeandet: Table TMP_SYMBOL dropped |
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2018-08-11 03:01:32,333 INFO - changelog.xml: changesets/metadata_migration.xml::input_symbol_table_migration::tjeandet: ChangeSet changesets/metadata_migration.xml::input_symbol_table_migration::tjeandet ran successfully in 195ms |
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2018-08-11 03:01:32,391 INFO - changelog.xml: changesets/metadata_migration.xml::create_tmp_symbol_for_call_outputs::tjeandet: SQL in file migration/metadata/CreateTmpSymbolTable.sql executed |
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2018-08-11 03:01:32,392 INFO - changelog.xml: changesets/metadata_migration.xml::create_tmp_symbol_for_call_outputs::tjeandet: ChangeSet changesets/metadata_migration.xml::create_tmp_symbol_for_call_outputs::tjeandet ran successfully in 49ms |
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2018-08-11 03:01:32,460 INFO - changelog.xml: changesets/metadata_migration.xml::load_tmp_symbol_for_call_outputs::tjeandet: SQL in file migration/metadata/LoadCallOutputSymbols.sql executed |
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2018-08-11 03:01:32,461 INFO - changelog.xml: changesets/metadata_migration.xml::load_tmp_symbol_for_call_outputs::tjeandet: ChangeSet changesets/metadata_migration.xml::load_tmp_symbol_for_call_outputs::tjeandet ran successfully in 29ms |
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2018-08-11 03:01:32,516 INFO - Running migration CallOutputSymbolTableMigration with a read batch size of 100000 and a write batch size of 100000 |
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2018-08-11 03:01:32,529 INFO - [CallOutputSymbolTableMigration] 100% |
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2018-08-11 03:01:32,533 INFO - changelog.xml: changesets/metadata_migration.xml::call_output_symbol_table_migration::tjeandet: Call outputs from Symbol Table migration complete. |
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2018-08-11 03:01:32,543 INFO - changelog.xml: changesets/metadata_migration.xml::call_output_symbol_table_migration::tjeandet: Table TMP_SYMBOL dropped |
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2018-08-11 03:01:32,545 INFO - changelog.xml: changesets/metadata_migration.xml::call_output_symbol_table_migration::tjeandet: ChangeSet changesets/metadata_migration.xml::call_output_symbol_table_migration::tjeandet ran successfully in 35ms |
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2018-08-11 03:01:32,603 INFO - changelog.xml: changesets/metadata_migration.xml::create_tmp_symbol_for_workflow_outputs::tjeandet: SQL in file migration/metadata/CreateTmpSymbolTable.sql executed |
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2018-08-11 03:01:32,603 INFO - changelog.xml: changesets/metadata_migration.xml::create_tmp_symbol_for_workflow_outputs::tjeandet: ChangeSet changesets/metadata_migration.xml::create_tmp_symbol_for_workflow_outputs::tjeandet ran successfully in 37ms |
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2018-08-11 03:01:32,630 INFO - changelog.xml: changesets/metadata_migration.xml::load_tmp_symbol_for_workflow_outputs::tjeandet: SQL in file migration/metadata/LoadWorkflowOutputSymbols.sql executed |
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2018-08-11 03:01:32,631 INFO - changelog.xml: changesets/metadata_migration.xml::load_tmp_symbol_for_workflow_outputs::tjeandet: ChangeSet changesets/metadata_migration.xml::load_tmp_symbol_for_workflow_outputs::tjeandet ran successfully in 3ms |
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2018-08-11 03:01:32,643 INFO - Running migration WorkflowOutputSymbolTableMigration with a read batch size of 100000 and a write batch size of 100000 |
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2018-08-11 03:01:32,679 INFO - [WorkflowOutputSymbolTableMigration] 100% |
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2018-08-11 03:01:32,680 INFO - changelog.xml: changesets/metadata_migration.xml::workflow_output_symbol_table_migration::tjeandet: Workflow outputs from Symbol Table migration complete. |
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2018-08-11 03:01:32,684 INFO - changelog.xml: changesets/metadata_migration.xml::workflow_output_symbol_table_migration::tjeandet: Table TMP_SYMBOL dropped |
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2018-08-11 03:01:32,684 INFO - changelog.xml: changesets/metadata_migration.xml::workflow_output_symbol_table_migration::tjeandet: ChangeSet changesets/metadata_migration.xml::workflow_output_symbol_table_migration::tjeandet ran successfully in 42ms |
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2018-08-11 03:01:32,749 INFO - changelog.xml: changesets/metadata_migration.xml::workflow_execution_table_migration::tjeandet: Workflow Execution Table migration complete. |
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2018-08-11 03:01:32,749 INFO - changelog.xml: changesets/metadata_migration.xml::workflow_execution_table_migration::tjeandet: ChangeSet changesets/metadata_migration.xml::workflow_execution_table_migration::tjeandet ran successfully in 62ms |
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2018-08-11 03:01:32,754 INFO - changelog.xml: changesets/metadata_migration.xml::workflow_execution_aux_table_migration::tjeandet: SQL in file migration/metadata/WorkflowExecutionAuxTableMigration.sql executed |
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2018-08-11 03:01:32,755 INFO - changelog.xml: changesets/metadata_migration.xml::workflow_execution_aux_table_migration::tjeandet: ChangeSet changesets/metadata_migration.xml::workflow_execution_aux_table_migration::tjeandet ran successfully in 4ms |
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2018-08-11 03:01:32,762 INFO - changelog.xml: changesets/metadata_migration.xml::execution_table_migration::tjeandet: Execution Table migration complete. |
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2018-08-11 03:01:32,763 INFO - changelog.xml: changesets/metadata_migration.xml::execution_table_migration::tjeandet: ChangeSet changesets/metadata_migration.xml::execution_table_migration::tjeandet ran successfully in 5ms |
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2018-08-11 03:01:32,766 INFO - changelog.xml: changesets/metadata_migration.xml::execution_event_table_migration_start::tjeandet: Execution Event Table (Start field) migration complete. |
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2018-08-11 03:01:32,767 INFO - changelog.xml: changesets/metadata_migration.xml::execution_event_table_migration_start::tjeandet: ChangeSet changesets/metadata_migration.xml::execution_event_table_migration_start::tjeandet ran successfully in 3ms |
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2018-08-11 03:01:32,807 INFO - changelog.xml: changesets/metadata_migration.xml::execution_event_table_migration_end::tjeandet: Execution Event Table (End field) migration complete. |
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2018-08-11 03:01:32,808 INFO - changelog.xml: changesets/metadata_migration.xml::execution_event_table_migration_end::tjeandet: ChangeSet changesets/metadata_migration.xml::execution_event_table_migration_end::tjeandet ran successfully in 40ms |
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2018-08-11 03:01:32,830 INFO - changelog.xml: changesets/metadata_migration.xml::execution_event_table_migration_description::tjeandet: Execution Event Table (Description field) migration complete. |
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2018-08-11 03:01:32,853 INFO - changelog.xml: changesets/metadata_migration.xml::execution_event_table_migration_description::tjeandet: ChangeSet changesets/metadata_migration.xml::execution_event_table_migration_description::tjeandet ran successfully in 28ms |
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2018-08-11 03:01:32,894 INFO - changelog.xml: changesets/metadata_migration.xml::execution_info_table_migration::tjeandet: SQL in file migration/metadata/ExecutionInfoTableMigration.sql executed |
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2018-08-11 03:01:32,896 INFO - changelog.xml: changesets/metadata_migration.xml::execution_info_table_migration::tjeandet: ChangeSet changesets/metadata_migration.xml::execution_info_table_migration::tjeandet ran successfully in 31ms |
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2018-08-11 03:01:32,944 INFO - changelog.xml: changesets/metadata_migration.xml::failure_event_table_migration::tjeandet: Failure Table migration complete. |
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2018-08-11 03:01:32,945 INFO - changelog.xml: changesets/metadata_migration.xml::failure_event_table_migration::tjeandet: ChangeSet changesets/metadata_migration.xml::failure_event_table_migration::tjeandet ran successfully in 11ms |
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Waiting for Cromwell... |
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2018-08-11 03:01:32,986 INFO - changelog.xml: changesets/metadata_migration.xml::runtime_attributes_table_migration::tjeandet: SQL in file migration/metadata/RuntimeAttributesTableMigration.sql executed |
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2018-08-11 03:01:32,990 INFO - changelog.xml: changesets/metadata_migration.xml::runtime_attributes_table_migration::tjeandet: ChangeSet changesets/metadata_migration.xml::runtime_attributes_table_migration::tjeandet ran successfully in 25ms |
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2018-08-11 03:01:33,017 INFO - changelog.xml: changesets/metadata_migration.xml::cleanup_metadata_migration::tjeandet: Table TMP_EXECUTION_MIGRATION dropped |
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2018-08-11 03:01:33,026 INFO - changelog.xml: changesets/metadata_migration.xml::cleanup_metadata_migration::tjeandet: ChangeSet changesets/metadata_migration.xml::cleanup_metadata_migration::tjeandet ran successfully in 19ms |
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2018-08-11 03:01:33,063 INFO - changelog.xml: changesets/call_caching_job_detritus.xml::call_caching_job_detritus::rmunshi: Table CALL_CACHING_JOB_DETRITUS created |
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2018-08-11 03:01:33,064 INFO - changelog.xml: changesets/call_caching_job_detritus.xml::call_caching_job_detritus::rmunshi: ChangeSet changesets/call_caching_job_detritus.xml::call_caching_job_detritus::rmunshi ran successfully in 20ms |
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2018-08-11 03:01:33,085 INFO - changelog.xml: changesets/call_caching_job_detritus.xml::call_caching_job_detritus_key_uniqueness::rmunshi: Unique constraint added to CALL_CACHING_JOB_DETRITUS(JOB_DETRITUS_KEY, RESULT_METAINFO_ID) |
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2018-08-11 03:01:33,087 INFO - changelog.xml: changesets/call_caching_job_detritus.xml::call_caching_job_detritus_key_uniqueness::rmunshi: ChangeSet changesets/call_caching_job_detritus.xml::call_caching_job_detritus_key_uniqueness::rmunshi ran successfully in 14ms |
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2018-08-11 03:01:33,125 INFO - changelog.xml: changesets/call_caching_job_detritus.xml::call_caching_job_detritus_foreign_key::rmunshi: Foreign key constraint added to CALL_CACHING_JOB_DETRITUS (RESULT_METAINFO_ID) |
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2018-08-11 03:01:33,125 INFO - changelog.xml: changesets/call_caching_job_detritus.xml::call_caching_job_detritus_foreign_key::rmunshi: ChangeSet changesets/call_caching_job_detritus.xml::call_caching_job_detritus_foreign_key::rmunshi ran successfully in 22ms |
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2018-08-11 03:01:33,165 INFO - changelog.xml: changesets/job_store_tinyints.xml::job_store_fix_job_successful::mcovarr: JOB_STORE.JOB_SUCCESSFUL datatype was changed to TINYINT |
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2018-08-11 03:01:33,165 INFO - changelog.xml: changesets/job_store_tinyints.xml::job_store_fix_job_successful::mcovarr: ChangeSet changesets/job_store_tinyints.xml::job_store_fix_job_successful::mcovarr ran successfully in 29ms |
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2018-08-11 03:01:33,195 INFO - changelog.xml: changesets/job_store_tinyints.xml::job_store_fix_job_retryable_failure::mcovarr: JOB_STORE.RETRYABLE_FAILURE datatype was changed to TINYINT |
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2018-08-11 03:01:33,196 INFO - changelog.xml: changesets/job_store_tinyints.xml::job_store_fix_job_retryable_failure::mcovarr: ChangeSet changesets/job_store_tinyints.xml::job_store_fix_job_retryable_failure::mcovarr ran successfully in 29ms |
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2018-08-11 03:01:33,234 INFO - changelog.xml: changesets/job_store_tinyints.xml::job_store_not_nullable_job_successful::mcovarr: Null constraint has been added to JOB_STORE.JOB_SUCCESSFUL |
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2018-08-11 03:01:33,234 INFO - changelog.xml: changesets/job_store_tinyints.xml::job_store_not_nullable_job_successful::mcovarr: ChangeSet changesets/job_store_tinyints.xml::job_store_not_nullable_job_successful::mcovarr ran successfully in 33ms |
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2018-08-11 03:01:33,255 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Index JOB_STORE_UUID_IDX dropped from table JOB_STORE |
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2018-08-11 03:01:33,269 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Index WORKFLOW_METADATA_NAME_IDX dropped from table WORKFLOW_METADATA_SUMMARY |
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2018-08-11 03:01:33,275 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Index WORKFLOW_METADATA_STATUS_IDX dropped from table WORKFLOW_METADATA_SUMMARY |
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2018-08-11 03:01:33,280 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Index WORKFLOW_STORE_STATE_IDX dropped from table WORKFLOW_STORE |
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2018-08-11 03:01:33,295 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Unique constraint UK_CALL_CACHING_JOB_DETRITUS_KEY dropped from CALL_CACHING_JOB_DETRITUS |
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2018-08-11 03:01:33,305 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Unique constraint UK_CALL_CACHING_RESULT_METAINFO dropped from CALL_CACHING_RESULT_METAINFO |
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2018-08-11 03:01:33,317 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Unique constraint UK_CALL_CACHING_HASH dropped from CALL_CACHING_HASH |
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2018-08-11 03:01:33,326 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Unique constraint UK_CALL_CACHING_RESULT_SIMPLETON dropped from CALL_CACHING_RESULT_SIMPLETON |
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2018-08-11 03:01:33,331 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Unique constraint JOB_STORE_JOBKEY_IDX dropped from JOB_STORE |
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2018-08-11 03:01:33,338 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Unique constraint UK_BACKEND_KV_STORE_KEY dropped from BACKEND_KV_STORE |
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2018-08-11 03:01:33,344 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Unique constraint UK_JOB_STORE_RESULT_SIMPLETON dropped from JOB_STORE_RESULT_SIMPLETON |
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2018-08-11 03:01:33,349 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Unique constraint SUMMARY_STATUS_SUMMARY_TABLE_NAME_SUMMARIZED_TABLE_NAME_INDEX dropped from SUMMARY_STATUS |
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2018-08-11 03:01:33,357 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Unique constraint WORKFLOW_METADATA_UUID_IDX dropped from WORKFLOW_METADATA_SUMMARY |
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2018-08-11 03:01:33,364 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Unique constraint WORKFLOW_STORE_UUID_IDX dropped from WORKFLOW_STORE |
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2018-08-11 03:01:33,371 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Foreign key CCJD_RESULT_METAINFO_ID_FK dropped |
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2018-08-11 03:01:33,378 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Foreign key CCH_RESULT_METAINFO_ID_FK dropped |
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2018-08-11 03:01:33,382 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Foreign key CCRS_RESULT_METAINFO_ID_FK dropped |
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2018-08-11 03:01:33,386 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Foreign key JSRS_JOB_STORE_FK dropped |
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2018-08-11 03:01:33,390 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Table CALL_CACHING_JOB_DETRITUS renamed to CALL_CACHING_DETRITUS_ENTRY |
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2018-08-11 03:01:33,394 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Table CALL_CACHING_RESULT_METAINFO renamed to CALL_CACHING_ENTRY |
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2018-08-11 03:01:33,398 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Table CALL_CACHING_HASH renamed to CALL_CACHING_HASH_ENTRY |
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2018-08-11 03:01:33,404 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Table CALL_CACHING_RESULT_SIMPLETON renamed to CALL_CACHING_SIMPLETON_ENTRY |
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2018-08-11 03:01:33,408 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Table BACKEND_KV_STORE renamed to JOB_KEY_VALUE_ENTRY |
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2018-08-11 03:01:33,411 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Table JOB_STORE renamed to JOB_STORE_ENTRY |
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2018-08-11 03:01:33,413 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Table JOB_STORE_RESULT_SIMPLETON renamed to JOB_STORE_SIMPLETON_ENTRY |
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2018-08-11 03:01:33,416 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Table METADATA_JOURNAL renamed to METADATA_ENTRY |
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2018-08-11 03:01:33,422 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Table SUMMARY_STATUS renamed to SUMMARY_STATUS_ENTRY |
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2018-08-11 03:01:33,425 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Table WORKFLOW_METADATA_SUMMARY renamed to WORKFLOW_METADATA_SUMMARY_ENTRY |
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2018-08-11 03:01:33,427 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Table WORKFLOW_STORE renamed to WORKFLOW_STORE_ENTRY |
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2018-08-11 03:01:33,446 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Column CALL_CACHING_DETRITUS_ENTRY.CALL_CACHING_JOB_DETRITUS_ID renamed to CALL_CACHING_DETRITUS_ENTRY_ID |
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2018-08-11 03:01:33,458 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Column CALL_CACHING_DETRITUS_ENTRY.JOB_DETRITUS_KEY renamed to DETRITUS_KEY |
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2018-08-11 03:01:33,470 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Column CALL_CACHING_DETRITUS_ENTRY.JOB_DETRITUS_VALUE renamed to DETRITUS_VALUE |
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2018-08-11 03:01:33,482 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Column CALL_CACHING_DETRITUS_ENTRY.RESULT_METAINFO_ID renamed to CALL_CACHING_ENTRY_ID |
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2018-08-11 03:01:33,496 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Column CALL_CACHING_ENTRY.CALL_CACHING_RESULT_METAINFO_ID renamed to CALL_CACHING_ENTRY_ID |
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2018-08-11 03:01:33,508 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Column CALL_CACHING_ENTRY.JOB_SCATTER_INDEX renamed to JOB_INDEX |
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2018-08-11 03:01:33,519 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Column CALL_CACHING_ENTRY.CALL_FQN renamed to CALL_FULLY_QUALIFIED_NAME |
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2018-08-11 03:01:33,533 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Column CALL_CACHING_HASH_ENTRY.RESULT_METAINFO_ID renamed to CALL_CACHING_ENTRY_ID |
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2018-08-11 03:01:33,555 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Column CALL_CACHING_HASH_ENTRY.CALL_CACHING_HASH_ID renamed to CALL_CACHING_HASH_ENTRY_ID |
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2018-08-11 03:01:33,569 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Column CALL_CACHING_SIMPLETON_ENTRY.RESULT_METAINFO_ID renamed to CALL_CACHING_ENTRY_ID |
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2018-08-11 03:01:33,587 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Column CALL_CACHING_SIMPLETON_ENTRY.CALL_CACHING_RESULT_SIMPLETON_ID renamed to CALL_CACHING_SIMPLETON_ENTRY_ID |
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2018-08-11 03:01:33,600 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Column JOB_KEY_VALUE_ENTRY.JOB_RETRY_ATTEMPT renamed to JOB_ATTEMPT |
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2018-08-11 03:01:33,612 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Column JOB_KEY_VALUE_ENTRY.JOB_SCATTER_INDEX renamed to JOB_INDEX |
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2018-08-11 03:01:33,628 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Column JOB_KEY_VALUE_ENTRY.BACKEND_KV_STORE_ID renamed to JOB_KEY_VALUE_ENTRY_ID |
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2018-08-11 03:01:33,639 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Column JOB_KEY_VALUE_ENTRY.CALL_FQN renamed to CALL_FULLY_QUALIFIED_NAME |
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2018-08-11 03:01:33,649 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Column JOB_STORE_ENTRY.JOB_RETRY_ATTEMPT renamed to JOB_ATTEMPT |
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2018-08-11 03:01:33,660 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Column JOB_STORE_ENTRY.JOB_SCATTER_INDEX renamed to JOB_INDEX |
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2018-08-11 03:01:33,675 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Column JOB_STORE_ENTRY.JOB_STORE_ID renamed to JOB_STORE_ENTRY_ID |
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2018-08-11 03:01:33,685 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Column JOB_STORE_ENTRY.CALL_FQN renamed to CALL_FULLY_QUALIFIED_NAME |
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2018-08-11 03:01:33,697 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Column JOB_STORE_SIMPLETON_ENTRY.JOB_STORE_ID renamed to JOB_STORE_ENTRY_ID |
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2018-08-11 03:01:33,713 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Column JOB_STORE_SIMPLETON_ENTRY.JOB_STORE_RESULT_SIMPLETON_ID renamed to JOB_STORE_SIMPLETON_ENTRY_ID |
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2018-08-11 03:01:33,728 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Column SUMMARY_STATUS_ENTRY.SUMMARY_STATUS_ID renamed to SUMMARY_STATUS_ENTRY_ID |
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2018-08-11 03:01:33,748 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Column WORKFLOW_METADATA_SUMMARY_ENTRY.END_DT renamed to END_TIMESTAMP |
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2018-08-11 03:01:33,764 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Column WORKFLOW_METADATA_SUMMARY_ENTRY.START_DT renamed to START_TIMESTAMP |
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2018-08-11 03:01:33,788 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Column WORKFLOW_METADATA_SUMMARY_ENTRY.WORKFLOW_METADATA_SUMMARY_ID renamed to WORKFLOW_METADATA_SUMMARY_ENTRY_ID |
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2018-08-11 03:01:33,809 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Column WORKFLOW_STORE_ENTRY.WORKFLOW_STORE_ID renamed to WORKFLOW_STORE_ENTRY_ID |
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2018-08-11 03:01:33,825 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Primary key dropped from CALL_CACHING_DETRITUS_ENTRY |
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2018-08-11 03:01:33,839 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Primary key dropped from CALL_CACHING_ENTRY |
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2018-08-11 03:01:33,856 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Primary key dropped from CALL_CACHING_HASH_ENTRY |
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2018-08-11 03:01:33,872 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Primary key dropped from CALL_CACHING_SIMPLETON_ENTRY |
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2018-08-11 03:01:33,888 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Primary key dropped from JOB_KEY_VALUE_ENTRY |
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2018-08-11 03:01:33,903 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Primary key dropped from JOB_STORE_ENTRY |
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2018-08-11 03:01:33,919 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Primary key dropped from JOB_STORE_SIMPLETON_ENTRY |
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2018-08-11 03:01:33,934 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Primary key dropped from SUMMARY_STATUS_ENTRY |
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2018-08-11 03:01:33,949 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Primary key dropped from WORKFLOW_METADATA_SUMMARY_ENTRY |
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2018-08-11 03:01:33,971 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Primary key dropped from WORKFLOW_STORE_ENTRY |
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2018-08-11 03:01:33,990 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Primary key added to CALL_CACHING_DETRITUS_ENTRY (CALL_CACHING_DETRITUS_ENTRY_ID) |
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2018-08-11 03:01:34,007 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Primary key added to CALL_CACHING_ENTRY (CALL_CACHING_ENTRY_ID) |
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2018-08-11 03:01:34,026 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Primary key added to CALL_CACHING_HASH_ENTRY (CALL_CACHING_HASH_ENTRY_ID) |
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2018-08-11 03:01:34,040 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Primary key added to CALL_CACHING_SIMPLETON_ENTRY (CALL_CACHING_SIMPLETON_ENTRY_ID) |
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2018-08-11 03:01:34,058 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Primary key added to JOB_KEY_VALUE_ENTRY (JOB_KEY_VALUE_ENTRY_ID) |
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2018-08-11 03:01:34,071 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Primary key added to JOB_STORE_ENTRY (JOB_STORE_ENTRY_ID) |
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2018-08-11 03:01:34,087 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Primary key added to JOB_STORE_SIMPLETON_ENTRY (JOB_STORE_SIMPLETON_ENTRY_ID) |
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2018-08-11 03:01:34,103 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Primary key added to SUMMARY_STATUS_ENTRY (SUMMARY_STATUS_ENTRY_ID) |
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2018-08-11 03:01:34,118 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Primary key added to WORKFLOW_METADATA_SUMMARY_ENTRY (WORKFLOW_METADATA_SUMMARY_ENTRY_ID) |
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2018-08-11 03:01:34,130 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Primary key added to WORKFLOW_STORE_ENTRY (WORKFLOW_STORE_ENTRY_ID) |
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2018-08-11 03:01:34,155 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Auto-increment added to CALL_CACHING_DETRITUS_ENTRY.CALL_CACHING_DETRITUS_ENTRY_ID |
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2018-08-11 03:01:34,178 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Auto-increment added to CALL_CACHING_ENTRY.CALL_CACHING_ENTRY_ID |
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2018-08-11 03:01:34,203 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Auto-increment added to CALL_CACHING_HASH_ENTRY.CALL_CACHING_HASH_ENTRY_ID |
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2018-08-11 03:01:34,233 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Auto-increment added to CALL_CACHING_SIMPLETON_ENTRY.CALL_CACHING_SIMPLETON_ENTRY_ID |
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2018-08-11 03:01:34,257 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Auto-increment added to JOB_KEY_VALUE_ENTRY.JOB_KEY_VALUE_ENTRY_ID |
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2018-08-11 03:01:34,276 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Auto-increment added to JOB_STORE_ENTRY.JOB_STORE_ENTRY_ID |
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2018-08-11 03:01:34,299 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Auto-increment added to JOB_STORE_SIMPLETON_ENTRY.JOB_STORE_SIMPLETON_ENTRY_ID |
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2018-08-11 03:01:34,316 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Auto-increment added to SUMMARY_STATUS_ENTRY.SUMMARY_STATUS_ENTRY_ID |
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2018-08-11 03:01:34,333 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Auto-increment added to WORKFLOW_METADATA_SUMMARY_ENTRY.WORKFLOW_METADATA_SUMMARY_ENTRY_ID |
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2018-08-11 03:01:34,349 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Auto-increment added to WORKFLOW_STORE_ENTRY.WORKFLOW_STORE_ENTRY_ID |
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2018-08-11 03:01:34,369 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Foreign key constraint added to CALL_CACHING_DETRITUS_ENTRY (CALL_CACHING_ENTRY_ID) |
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2018-08-11 03:01:34,392 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Foreign key constraint added to CALL_CACHING_HASH_ENTRY (CALL_CACHING_ENTRY_ID) |
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2018-08-11 03:01:34,426 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Foreign key constraint added to CALL_CACHING_SIMPLETON_ENTRY (CALL_CACHING_ENTRY_ID) |
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2018-08-11 03:01:34,454 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Foreign key constraint added to JOB_STORE_SIMPLETON_ENTRY (JOB_STORE_ENTRY_ID) |
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2018-08-11 03:01:34,470 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Unique constraint added to CALL_CACHING_DETRITUS_ENTRY(CALL_CACHING_ENTRY_ID, DETRITUS_KEY) |
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2018-08-11 03:01:34,481 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Unique constraint added to CALL_CACHING_ENTRY(WORKFLOW_EXECUTION_UUID, CALL_FULLY_QUALIFIED_NAME, JOB_INDEX) |
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2018-08-11 03:01:34,493 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Unique constraint added to CALL_CACHING_HASH_ENTRY(CALL_CACHING_ENTRY_ID, HASH_KEY) |
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2018-08-11 03:01:34,507 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Unique constraint added to CALL_CACHING_SIMPLETON_ENTRY(CALL_CACHING_ENTRY_ID, SIMPLETON_KEY) |
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2018-08-11 03:01:34,519 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Unique constraint added to JOB_KEY_VALUE_ENTRY(WORKFLOW_EXECUTION_UUID, CALL_FULLY_QUALIFIED_NAME, JOB_INDEX, JOB_ATTEMPT, STORE_KEY) |
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2018-08-11 03:01:34,541 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Unique constraint added to JOB_STORE_ENTRY(WORKFLOW_EXECUTION_UUID, CALL_FULLY_QUALIFIED_NAME, JOB_INDEX, JOB_ATTEMPT) |
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2018-08-11 03:01:34,551 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Unique constraint added to JOB_STORE_SIMPLETON_ENTRY(JOB_STORE_ENTRY_ID, SIMPLETON_KEY) |
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2018-08-11 03:01:34,563 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Unique constraint added to SUMMARY_STATUS_ENTRY(SUMMARY_TABLE_NAME, SUMMARIZED_TABLE_NAME) |
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2018-08-11 03:01:34,572 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Unique constraint added to WORKFLOW_METADATA_SUMMARY_ENTRY(WORKFLOW_EXECUTION_UUID) |
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2018-08-11 03:01:34,581 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Unique constraint added to WORKFLOW_STORE_ENTRY(WORKFLOW_EXECUTION_UUID) |
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2018-08-11 03:01:34,589 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Index IX_JOB_STORE_ENTRY_WEU created |
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2018-08-11 03:01:34,597 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Index IX_WORKFLOW_METADATA_SUMMARY_ENTRY_WN created |
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2018-08-11 03:01:34,606 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Index IX_WORKFLOW_METADATA_SUMMARY_ENTRY_WS created |
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2018-08-11 03:01:34,614 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Index IX_WORKFLOW_STORE_ENTRY_WS created |
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2018-08-11 03:01:34,615 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Data updated in SUMMARY_STATUS_ENTRY |
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2018-08-11 03:01:34,616 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Data updated in SUMMARY_STATUS_ENTRY |
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2018-08-11 03:01:34,617 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: ChangeSet changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir ran successfully in 1372ms |
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2018-08-11 03:01:34,869 INFO - Running migration RenameWorkflowOptionsInMetadata with a read batch size of 100000 and a write batch size of 100000 |
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2018-08-11 03:01:34,875 INFO - [RenameWorkflowOptionsInMetadata] 100% |
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2018-08-11 03:01:34,876 INFO - changelog.xml: changesets/rename_workflow_options_in_metadata.xml::rename_workflow_options_in_metadata::tjeandet: RenameWorkflowOptionsInMetadata complete. |
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2018-08-11 03:01:34,879 INFO - changelog.xml: changesets/rename_workflow_options_in_metadata.xml::rename_workflow_options_in_metadata::tjeandet: ChangeSet changesets/rename_workflow_options_in_metadata.xml::rename_workflow_options_in_metadata::tjeandet ran successfully in 12ms |
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2018-08-11 03:01:34,882 INFO - Running migration EncryptWorkflowStoreEntryWorkflowOptions with a read batch size of 100000 and a write batch size of 100000 |
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2018-08-11 03:01:34,920 INFO - [EncryptWorkflowStoreEntryWorkflowOptions] 100% |
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2018-08-11 03:01:34,935 INFO - changelog.xml: changesets/encrypt_and_clear_workflow_options.xml::encrypt_workflow_store_entry_workflow_options::kshakir: EncryptWorkflowStoreEntryWorkflowOptions complete. |
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2018-08-11 03:01:34,937 INFO - changelog.xml: changesets/encrypt_and_clear_workflow_options.xml::encrypt_workflow_store_entry_workflow_options::kshakir: ChangeSet changesets/encrypt_and_clear_workflow_options.xml::encrypt_workflow_store_entry_workflow_options::kshakir ran successfully in 56ms |
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2018-08-11 03:01:34,955 INFO - Running migration ClearMetadataEntryWorkflowOptions with a read batch size of 100000 and a write batch size of 100000 |
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2018-08-11 03:01:34,965 INFO - [ClearMetadataEntryWorkflowOptions] 100% |
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2018-08-11 03:01:34,967 INFO - changelog.xml: changesets/encrypt_and_clear_workflow_options.xml::clear_metadata_entry_workflow_options::kshakir: ClearMetadataEntryWorkflowOptions complete. |
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2018-08-11 03:01:34,969 INFO - changelog.xml: changesets/encrypt_and_clear_workflow_options.xml::clear_metadata_entry_workflow_options::kshakir: ChangeSet changesets/encrypt_and_clear_workflow_options.xml::clear_metadata_entry_workflow_options::kshakir ran successfully in 19ms |
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2018-08-11 03:01:35,014 INFO - changelog.xml: changesets/sub_workflow_store.xml::SUB_WORKFLOW_STORE_ENTRY::tjeandet: Table SUB_WORKFLOW_STORE_ENTRY created |
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2018-08-11 03:01:35,017 INFO - changelog.xml: changesets/sub_workflow_store.xml::SUB_WORKFLOW_STORE_ENTRY::tjeandet: ChangeSet changesets/sub_workflow_store.xml::SUB_WORKFLOW_STORE_ENTRY::tjeandet ran successfully in 32ms |
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2018-08-11 03:01:35,036 INFO - changelog.xml: changesets/sub_workflow_store.xml::sub_workflow_store_uuid_index::tjeandet: Index IX_SUB_WORKFLOW_STORE_ENTRY_PWEU created |
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2018-08-11 03:01:35,037 INFO - changelog.xml: changesets/sub_workflow_store.xml::sub_workflow_store_uuid_index::tjeandet: ChangeSet changesets/sub_workflow_store.xml::sub_workflow_store_uuid_index::tjeandet ran successfully in 12ms |
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2018-08-11 03:01:35,137 INFO - changelog.xml: changesets/sub_workflow_store.xml::sub_workflow_store_jobkey_index::tjeandet: Unique constraint added to SUB_WORKFLOW_STORE_ENTRY(PARENT_WORKFLOW_EXECUTION_UUID, CALL_FULLY_QUALIFIED_NAME, CALL_INDEX, CALL_ATTEMPT) |
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2018-08-11 03:01:35,138 INFO - changelog.xml: changesets/sub_workflow_store.xml::sub_workflow_store_jobkey_index::tjeandet: ChangeSet changesets/sub_workflow_store.xml::sub_workflow_store_jobkey_index::tjeandet ran successfully in 12ms |
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2018-08-11 03:01:35,169 INFO - changelog.xml: changesets/sub_workflow_store.xml::sub_workflow_store_root_workflow_fk::tjeandet: Foreign key constraint added to SUB_WORKFLOW_STORE_ENTRY (ROOT_WORKFLOW_ID) |
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2018-08-11 03:01:35,169 INFO - changelog.xml: changesets/sub_workflow_store.xml::sub_workflow_store_root_workflow_fk::tjeandet: ChangeSet changesets/sub_workflow_store.xml::sub_workflow_store_root_workflow_fk::tjeandet ran successfully in 29ms |
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2018-08-11 03:01:35,191 INFO - changelog.xml: changesets/workflow_store_imports_file.xml::workflow-store-imports-file::cjllanwarne: Columns IMPORTS_ZIP(LONGBLOB) added to WORKFLOW_STORE_ENTRY |
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2018-08-11 03:01:35,191 INFO - changelog.xml: changesets/workflow_store_imports_file.xml::workflow-store-imports-file::cjllanwarne: ChangeSet changesets/workflow_store_imports_file.xml::workflow-store-imports-file::cjllanwarne ran successfully in 20ms |
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2018-08-11 03:01:35,215 INFO - changelog.xml: changesets/workflow_store_labels_file.xml::workflow-store-labels-file::cjllanwarne: Columns CUSTOM_LABELS(LONGTEXT) added to WORKFLOW_STORE_ENTRY |
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2018-08-11 03:01:35,215 INFO - changelog.xml: changesets/workflow_store_labels_file.xml::workflow-store-labels-file::cjllanwarne: ChangeSet changesets/workflow_store_labels_file.xml::workflow-store-labels-file::cjllanwarne ran successfully in 21ms |
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2018-08-11 03:01:35,265 INFO - changelog.xml: changesets/embiggen_detritus_value.xml::embiggen_call_caching_detritus_entry::rmunshi: CALL_CACHING_DETRITUS_ENTRY.DETRITUS_VALUE datatype was changed to LONGTEXT |
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2018-08-11 03:01:35,266 INFO - changelog.xml: changesets/embiggen_detritus_value.xml::embiggen_call_caching_detritus_entry::rmunshi: ChangeSet changesets/embiggen_detritus_value.xml::embiggen_call_caching_detritus_entry::rmunshi ran successfully in 44ms |
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2018-08-11 03:01:35,291 INFO - changelog.xml: changesets/standardize_column_names_patches.xml::standardize_column_names_patches::kshakir: Foreign key FK_CALL_CACHING_HASH_ENTRY_CALL_CACHING_ENTRY_ID dropped |
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2018-08-11 03:01:35,297 INFO - changelog.xml: changesets/standardize_column_names_patches.xml::standardize_column_names_patches::kshakir: Foreign key FK_JOB_STORE_RESULT_SIMPLETON_JOB_STORE_ENTRY_ID dropped |
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2018-08-11 03:01:35,303 INFO - changelog.xml: changesets/standardize_column_names_patches.xml::standardize_column_names_patches::kshakir: Foreign key FK_SUB_WORKFLOW_STORE_ROOT_WORKFLOW_ID_WORKFLOW_STORE_ENTRY_ID dropped |
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2018-08-11 03:01:35,308 INFO - changelog.xml: changesets/standardize_column_names_patches.xml::standardize_column_names_patches::kshakir: Unique constraint UC_CALL_CACHING_ENTRY_WEU_CQFN_JI dropped from CALL_CACHING_ENTRY |
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2018-08-11 03:01:35,314 INFO - changelog.xml: changesets/standardize_column_names_patches.xml::standardize_column_names_patches::kshakir: Unique constraint UC_CALL_CACHING_HASH_ENTRY_CCEI dropped from CALL_CACHING_HASH_ENTRY |
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2018-08-11 03:01:35,321 INFO - changelog.xml: changesets/standardize_column_names_patches.xml::standardize_column_names_patches::kshakir: Unique constraint added to CALL_CACHING_ENTRY(WORKFLOW_EXECUTION_UUID, CALL_FULLY_QUALIFIED_NAME, JOB_INDEX) |
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2018-08-11 03:01:35,327 INFO - changelog.xml: changesets/standardize_column_names_patches.xml::standardize_column_names_patches::kshakir: Unique constraint added to CALL_CACHING_HASH_ENTRY(CALL_CACHING_ENTRY_ID, HASH_KEY) |
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2018-08-11 03:01:35,351 INFO - changelog.xml: changesets/standardize_column_names_patches.xml::standardize_column_names_patches::kshakir: Foreign key constraint added to CALL_CACHING_HASH_ENTRY (CALL_CACHING_ENTRY_ID) |
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2018-08-11 03:01:35,373 INFO - changelog.xml: changesets/standardize_column_names_patches.xml::standardize_column_names_patches::kshakir: Foreign key constraint added to JOB_STORE_SIMPLETON_ENTRY (JOB_STORE_ENTRY_ID) |
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2018-08-11 03:01:35,403 INFO - changelog.xml: changesets/standardize_column_names_patches.xml::standardize_column_names_patches::kshakir: Foreign key constraint added to SUB_WORKFLOW_STORE_ENTRY (ROOT_WORKFLOW_ID) |
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2018-08-11 03:01:35,403 INFO - changelog.xml: changesets/standardize_column_names_patches.xml::standardize_column_names_patches::kshakir: ChangeSet changesets/standardize_column_names_patches.xml::standardize_column_names_patches::kshakir ran successfully in 125ms |
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2018-08-11 03:01:35,430 INFO - changelog.xml: changesets/nullable_lobs.xml::nullable_lobs::kshakir: Null constraint dropped from CALL_CACHING_DETRITUS_ENTRY.DETRITUS_VALUE |
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2018-08-11 03:01:35,447 INFO - changelog.xml: changesets/nullable_lobs.xml::nullable_lobs::kshakir: Null constraint dropped from CALL_CACHING_SIMPLETON_ENTRY.SIMPLETON_VALUE |
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2018-08-11 03:01:35,456 INFO - changelog.xml: changesets/nullable_lobs.xml::nullable_lobs::kshakir: Null constraint dropped from JOB_STORE_SIMPLETON_ENTRY.SIMPLETON_VALUE |
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2018-08-11 03:01:35,474 INFO - changelog.xml: changesets/nullable_lobs.xml::nullable_lobs::kshakir: Null constraint dropped from WORKFLOW_STORE_ENTRY.WORKFLOW_DEFINITION |
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2018-08-11 03:01:35,493 INFO - changelog.xml: changesets/nullable_lobs.xml::nullable_lobs::kshakir: Null constraint dropped from WORKFLOW_STORE_ENTRY.WORKFLOW_INPUTS |
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2018-08-11 03:01:35,514 INFO - changelog.xml: changesets/nullable_lobs.xml::nullable_lobs::kshakir: Null constraint dropped from WORKFLOW_STORE_ENTRY.WORKFLOW_OPTIONS |
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2018-08-11 03:01:35,535 INFO - changelog.xml: changesets/nullable_lobs.xml::nullable_lobs::kshakir: Null constraint dropped from WORKFLOW_STORE_ENTRY.CUSTOM_LABELS |
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2018-08-11 03:01:35,537 INFO - changelog.xml: changesets/nullable_lobs.xml::nullable_lobs::kshakir: ChangeSet changesets/nullable_lobs.xml::nullable_lobs::kshakir ran successfully in 119ms |
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2018-08-11 03:01:35,584 INFO - changelog.xml: changesets/add_attempt_in_call_caching_entry.xml::add_attempt_in_call_caching_entry::tjeandet: Columns JOB_ATTEMPT(INT) added to CALL_CACHING_ENTRY |
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2018-08-11 03:01:35,584 INFO - changelog.xml: changesets/add_attempt_in_call_caching_entry.xml::add_attempt_in_call_caching_entry::tjeandet: ChangeSet changesets/add_attempt_in_call_caching_entry.xml::add_attempt_in_call_caching_entry::tjeandet ran successfully in 21ms |
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2018-08-11 03:01:35,588 INFO - changelog.xml: changesets/replace_empty_custom_labels.xml::replace_empty_custom_labels::rmunshi: SQL in file migration/workflow_store/replace_empty_custom_labels.sql executed |
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2018-08-11 03:01:35,588 INFO - changelog.xml: changesets/replace_empty_custom_labels.xml::replace_empty_custom_labels::rmunshi: ChangeSet changesets/replace_empty_custom_labels.xml::replace_empty_custom_labels::rmunshi ran successfully in 2ms |
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2018-08-11 03:01:35,630 INFO - changelog.xml: changesets/replace_empty_custom_labels.xml::custom_labels_not_null::rmunshi: Null constraint has been added to WORKFLOW_STORE_ENTRY.CUSTOM_LABELS |
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2018-08-11 03:01:35,631 INFO - changelog.xml: changesets/replace_empty_custom_labels.xml::custom_labels_not_null::rmunshi: ChangeSet changesets/replace_empty_custom_labels.xml::custom_labels_not_null::rmunshi ran successfully in 40ms |
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2018-08-11 03:01:35,653 INFO - changelog.xml: changesets/failure_metadata.xml::failure_to_message::cjllanwarne: SQL in file failure_metadata_scripts/failure_to_message.sql executed |
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2018-08-11 03:01:35,657 INFO - changelog.xml: changesets/failure_metadata.xml::failure_to_message::cjllanwarne: ChangeSet changesets/failure_metadata.xml::failure_to_message::cjllanwarne ran successfully in 10ms |
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2018-08-11 03:01:35,683 INFO - changelog.xml: changesets/failure_metadata.xml::remove_failure_timestamp::cjllanwarne: Data deleted from METADATA_ENTRY |
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2018-08-11 03:01:35,685 INFO - changelog.xml: changesets/failure_metadata.xml::remove_failure_timestamp::cjllanwarne: ChangeSet changesets/failure_metadata.xml::remove_failure_timestamp::cjllanwarne ran successfully in 4ms |
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2018-08-11 03:01:35,718 INFO - changelog.xml: changesets/failure_metadata.xml::causedByLists::cjllanwarne: SQL in file failure_metadata_scripts/causedBy_lists.sql executed |
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2018-08-11 03:01:35,719 INFO - changelog.xml: changesets/failure_metadata.xml::causedByLists::cjllanwarne: ChangeSet changesets/failure_metadata.xml::causedByLists::cjllanwarne ran successfully in 23ms |
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2018-08-11 03:01:35,759 INFO - Running migration DeduplicateFailureMessageIds with a read batch size of 100000 and a write batch size of 100000 |
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2018-08-11 03:01:35,789 INFO - [DeduplicateFailureMessageIds] 100% |
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2018-08-11 03:01:35,791 INFO - changelog.xml: changesets/failure_metadata.xml::deduplicate_failure_messages::cjllanwarne: DeduplicateFailureMessageIds complete. |
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2018-08-11 03:01:35,795 INFO - changelog.xml: changesets/failure_metadata.xml::deduplicate_failure_messages::cjllanwarne: ChangeSet changesets/failure_metadata.xml::deduplicate_failure_messages::cjllanwarne ran successfully in 39ms |
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2018-08-11 03:01:35,834 INFO - changelog.xml: changesets/failure_metadata.xml::guaranteed_caused_bys::cjllanwarne: SQL in file failure_metadata_scripts/guarantee_causedBy.sql executed |
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2018-08-11 03:01:35,838 INFO - changelog.xml: changesets/failure_metadata.xml::guaranteed_caused_bys::cjllanwarne: ChangeSet changesets/failure_metadata.xml::guaranteed_caused_bys::cjllanwarne ran successfully in 27ms |
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2018-08-11 03:01:35,862 INFO - Running migration ExpandSingleFailureStrings with a read batch size of 100000 and a write batch size of 100000 |
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2018-08-11 03:01:35,881 INFO - [ExpandSingleFailureStrings] 100% |
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2018-08-11 03:01:35,892 INFO - changelog.xml: changesets/failure_metadata_2.xml::expand_single_failure_strings::cjllanwarne: ExpandSingleFailureStrings complete. |
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2018-08-11 03:01:35,893 INFO - changelog.xml: changesets/failure_metadata_2.xml::expand_single_failure_strings::cjllanwarne: ChangeSet changesets/failure_metadata_2.xml::expand_single_failure_strings::cjllanwarne ran successfully in 33ms |
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2018-08-11 03:01:35,926 INFO - changelog.xml: changesets/call_caching_aggregated_hashes.xml::call_caching_aggregation_entry::tjeandet: Table CALL_CACHING_AGGREGATION_ENTRY created |
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2018-08-11 03:01:35,927 INFO - changelog.xml: changesets/call_caching_aggregated_hashes.xml::call_caching_aggregation_entry::tjeandet: ChangeSet changesets/call_caching_aggregated_hashes.xml::call_caching_aggregation_entry::tjeandet ran successfully in 26ms |
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2018-08-11 03:01:35,985 INFO - changelog.xml: changesets/call_caching_aggregated_hashes.xml::call_caching_aggregation_entry_keys_and_indexes::tjeandet: Foreign key constraint added to CALL_CACHING_AGGREGATION_ENTRY (CALL_CACHING_ENTRY_ID) |
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2018-08-11 03:01:35,994 INFO - changelog.xml: changesets/call_caching_aggregated_hashes.xml::call_caching_aggregation_entry_keys_and_indexes::tjeandet: Index IX_CALL_CACHING_AGGREGATION_ENTRY_BA_IFA created |
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2018-08-11 03:01:35,994 INFO - changelog.xml: changesets/call_caching_aggregated_hashes.xml::call_caching_aggregation_entry_keys_and_indexes::tjeandet: ChangeSet changesets/call_caching_aggregated_hashes.xml::call_caching_aggregation_entry_keys_and_indexes::tjeandet ran successfully in 60ms |
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2018-08-11 03:01:36,009 INFO - changelog.xml: changesets/call_caching_aggregated_hashes.xml::call_caching_aggregation_entry_populate_aggregation::tjeandet: SQL in file call_caching_aggregation/call_caching_base_aggregation.sql executed |
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2018-08-11 03:01:36,020 INFO - changelog.xml: changesets/call_caching_aggregated_hashes.xml::call_caching_aggregation_entry_populate_aggregation::tjeandet: SQL in file call_caching_aggregation/call_caching_input_files_aggregation.sql executed |
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2018-08-11 03:01:36,020 INFO - changelog.xml: changesets/call_caching_aggregated_hashes.xml::call_caching_aggregation_entry_populate_aggregation::tjeandet: ChangeSet changesets/call_caching_aggregated_hashes.xml::call_caching_aggregation_entry_populate_aggregation::tjeandet ran successfully in 21ms |
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2018-08-11 03:01:36,077 INFO - changelog.xml: changesets/custom_label_entry.xml::custom_LABEL_entry::rmunshi: Table CUSTOM_LABEL_ENTRY created |
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2018-08-11 03:01:36,078 INFO - changelog.xml: changesets/custom_label_entry.xml::custom_LABEL_entry::rmunshi: ChangeSet changesets/custom_label_entry.xml::custom_LABEL_entry::rmunshi ran successfully in 24ms |
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2018-08-11 03:01:36,106 INFO - changelog.xml: changesets/custom_label_entry.xml::WMSE_workflow_execution_uuid_foreign_key::rmunshi: Foreign key constraint added to CUSTOM_LABEL_ENTRY (WORKFLOW_EXECUTION_UUID) |
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2018-08-11 03:01:36,107 INFO - changelog.xml: changesets/custom_label_entry.xml::WMSE_workflow_execution_uuid_foreign_key::rmunshi: ChangeSet changesets/custom_label_entry.xml::WMSE_workflow_execution_uuid_foreign_key::rmunshi ran successfully in 27ms |
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2018-08-11 03:01:36,118 INFO - changelog.xml: changesets/custom_label_entry.xml::custom_label_entry_index::rmunshi: Unique constraint added to CUSTOM_LABEL_ENTRY(CUSTOM_LABEL_KEY, CUSTOM_LABEL_VALUE, WORKFLOW_EXECUTION_UUID) |
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2018-08-11 03:01:36,119 INFO - changelog.xml: changesets/custom_label_entry.xml::custom_label_entry_index::rmunshi: ChangeSet changesets/custom_label_entry.xml::custom_label_entry_index::rmunshi ran successfully in 10ms |
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2018-08-11 03:01:36,157 INFO - changelog.xml: changesets/custom_label_entry.xml::modify label key/value data types::rmunshi: CUSTOM_LABEL_ENTRY.CUSTOM_LABEL_KEY datatype was changed to VARCHAR(63) |
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2018-08-11 03:01:36,184 INFO - changelog.xml: changesets/custom_label_entry.xml::modify label key/value data types::rmunshi: CUSTOM_LABEL_ENTRY.CUSTOM_LABEL_VALUE datatype was changed to VARCHAR(63) |
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2018-08-11 03:01:36,185 INFO - changelog.xml: changesets/custom_label_entry.xml::modify label key/value data types::rmunshi: ChangeSet changesets/custom_label_entry.xml::modify label key/value data types::rmunshi ran successfully in 58ms |
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2018-08-11 03:01:36,206 INFO - changelog.xml: changesets/docker_hash_store.xml::DOCKER_HASH_STORE_ENTRY::tjeandet: Table DOCKER_HASH_STORE_ENTRY created |
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2018-08-11 03:01:36,214 INFO - changelog.xml: changesets/docker_hash_store.xml::DOCKER_HASH_STORE_ENTRY::tjeandet: ChangeSet changesets/docker_hash_store.xml::DOCKER_HASH_STORE_ENTRY::tjeandet ran successfully in 26ms |
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2018-08-11 03:01:36,263 INFO - changelog.xml: changesets/docker_hash_store.xml::docker_hash_store_uuid_unique_constraint::tjeandet: Unique constraint added to DOCKER_HASH_STORE_ENTRY(WORKFLOW_EXECUTION_UUID, DOCKER_TAG) |
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2018-08-11 03:01:36,263 INFO - changelog.xml: changesets/docker_hash_store.xml::docker_hash_store_uuid_unique_constraint::tjeandet: ChangeSet changesets/docker_hash_store.xml::docker_hash_store_uuid_unique_constraint::tjeandet ran successfully in 27ms |
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2018-08-11 03:01:36,310 INFO - changelog.xml: changesets/workflow_store_type_and_version.xml::workflow-store-type-and-version::mcovarr: Columns WORKFLOW_TYPE(VARCHAR(30)),WORKFLOW_TYPE_VERSION(VARCHAR(255)) added to WORKFLOW_STORE_ENTRY |
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2018-08-11 03:01:36,310 INFO - changelog.xml: changesets/workflow_store_type_and_version.xml::workflow-store-type-and-version::mcovarr: ChangeSet changesets/workflow_store_type_and_version.xml::workflow-store-type-and-version::mcovarr ran successfully in 29ms |
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2018-08-11 03:01:36,325 INFO - Running migration PreemptedIsABackendStatus with a read batch size of 100000 and a write batch size of 100000 |
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2018-08-11 03:01:36,365 INFO - [PreemptedIsABackendStatus] 100% |
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2018-08-11 03:01:36,374 INFO - changelog.xml: changesets/preempted_is_a_backend_status.xml::preempted_is_a_backend_status::cjllanwarne: PreemptedIsABackendStatus complete. |
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2018-08-11 03:01:36,381 INFO - changelog.xml: changesets/preempted_is_a_backend_status.xml::preempted_is_a_backend_status::cjllanwarne: ChangeSet changesets/preempted_is_a_backend_status.xml::preempted_is_a_backend_status::cjllanwarne ran successfully in 63ms |
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2018-08-11 03:01:36,394 INFO - changelog.xml: changesets/remove_pre_pbe_tables.xml::drop-pre-pbe-tables::mcovarr: Table EXECUTION_INFO dropped |
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2018-08-11 03:01:36,399 INFO - changelog.xml: changesets/remove_pre_pbe_tables.xml::drop-pre-pbe-tables::mcovarr: Table EXECUTION_EVENT dropped |
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2018-08-11 03:01:36,403 INFO - changelog.xml: changesets/remove_pre_pbe_tables.xml::drop-pre-pbe-tables::mcovarr: Table FAILURE_EVENT dropped |
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2018-08-11 03:01:36,407 INFO - changelog.xml: changesets/remove_pre_pbe_tables.xml::drop-pre-pbe-tables::mcovarr: Table RUNTIME_ATTRIBUTES dropped |
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2018-08-11 03:01:36,411 INFO - changelog.xml: changesets/remove_pre_pbe_tables.xml::drop-pre-pbe-tables::mcovarr: Table SYMBOL dropped |
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2018-08-11 03:01:36,415 INFO - changelog.xml: changesets/remove_pre_pbe_tables.xml::drop-pre-pbe-tables::mcovarr: Table EXECUTION dropped |
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2018-08-11 03:01:36,418 INFO - changelog.xml: changesets/remove_pre_pbe_tables.xml::drop-pre-pbe-tables::mcovarr: Table WORKFLOW_EXECUTION_AUX dropped |
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2018-08-11 03:01:36,422 INFO - changelog.xml: changesets/remove_pre_pbe_tables.xml::drop-pre-pbe-tables::mcovarr: Table WORKFLOW_EXECUTION dropped |
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2018-08-11 03:01:36,423 INFO - changelog.xml: changesets/remove_pre_pbe_tables.xml::drop-pre-pbe-tables::mcovarr: ChangeSet changesets/remove_pre_pbe_tables.xml::drop-pre-pbe-tables::mcovarr ran successfully in 34ms |
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2018-08-11 03:01:36,431 INFO - changelog.xml: changesets/move_sql_metadata_changelog.xml::move_metadata_changelog::kshakir: Foreign key FK_CUSTOM_LABEL_ENTRY_WORKFLOW_EXECUTION_UUID dropped |
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2018-08-11 03:01:36,436 INFO - changelog.xml: changesets/move_sql_metadata_changelog.xml::move_metadata_changelog::kshakir: Unique constraint UC_CUSTOM_LABEL_ENTRY_CLK_CLV_WEU dropped from CUSTOM_LABEL_ENTRY |
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2018-08-11 03:01:36,443 INFO - changelog.xml: changesets/move_sql_metadata_changelog.xml::move_metadata_changelog::kshakir: Unique constraint UC_SUMMARY_STATUS_ENTRY_STN_STN dropped from SUMMARY_STATUS_ENTRY |
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2018-08-11 03:01:36,449 INFO - changelog.xml: changesets/move_sql_metadata_changelog.xml::move_metadata_changelog::kshakir: Unique constraint UC_WORKFLOW_METADATA_SUMMARY_ENTRY_WEU dropped from WORKFLOW_METADATA_SUMMARY_ENTRY |
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2018-08-11 03:01:36,453 INFO - changelog.xml: changesets/move_sql_metadata_changelog.xml::move_metadata_changelog::kshakir: Table CUSTOM_LABEL_ENTRY dropped |
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2018-08-11 03:01:36,458 INFO - changelog.xml: changesets/move_sql_metadata_changelog.xml::move_metadata_changelog::kshakir: Table METADATA_ENTRY dropped |
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2018-08-11 03:01:36,461 INFO - changelog.xml: changesets/move_sql_metadata_changelog.xml::move_metadata_changelog::kshakir: Table SUMMARY_STATUS_ENTRY dropped |
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2018-08-11 03:01:36,469 INFO - changelog.xml: changesets/move_sql_metadata_changelog.xml::move_metadata_changelog::kshakir: Table WORKFLOW_METADATA_SUMMARY_ENTRY dropped |
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2018-08-11 03:01:36,470 INFO - changelog.xml: changesets/move_sql_metadata_changelog.xml::move_metadata_changelog::kshakir: ChangeSet changesets/move_sql_metadata_changelog.xml::move_metadata_changelog::kshakir ran successfully in 45ms |
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2018-08-11 03:01:36,546 INFO - changelog.xml: changesets/workflow_store_state_widening.xml::workflow-store-state-widening::tjeandet: WORKFLOW_STORE_ENTRY.WORKFLOW_STATE datatype was changed to varchar(20) |
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2018-08-11 03:01:36,547 INFO - changelog.xml: changesets/workflow_store_state_widening.xml::workflow-store-state-widening::tjeandet: ChangeSet changesets/workflow_store_state_widening.xml::workflow-store-state-widening::tjeandet ran successfully in 40ms |
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2018-08-11 03:01:36,582 INFO - changelog.xml: changesets/workflow_store_restarted_column.xml::workflow-store-restarted-column::tjeandet: Columns RESTARTED(BOOLEAN) added to WORKFLOW_STORE_ENTRY |
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2018-08-11 03:01:36,582 INFO - changelog.xml: changesets/workflow_store_restarted_column.xml::workflow-store-restarted-column::tjeandet: ChangeSet changesets/workflow_store_restarted_column.xml::workflow-store-restarted-column::tjeandet ran successfully in 33ms |
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2018-08-11 03:01:36,585 INFO - changelog.xml: changesets/workflow_store_restarted_column.xml::update-restartable::tjeandet: Data updated in WORKFLOW_STORE_ENTRY |
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2018-08-11 03:01:36,585 INFO - changelog.xml: changesets/workflow_store_restarted_column.xml::update-restartable::tjeandet: Data updated in WORKFLOW_STORE_ENTRY |
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2018-08-11 03:01:36,585 INFO - changelog.xml: changesets/workflow_store_restarted_column.xml::update-restartable::tjeandet: ChangeSet changesets/workflow_store_restarted_column.xml::update-restartable::tjeandet ran successfully in 1ms |
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2018-08-11 03:01:36,628 INFO - changelog.xml: changesets/workflow_store_workflow_root_column.xml::workflow-store-workflow-root-column::tjeandet: Columns WORKFLOW_ROOT(VARCHAR(100)) added to WORKFLOW_STORE_ENTRY |
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2018-08-11 03:01:36,629 INFO - changelog.xml: changesets/workflow_store_workflow_root_column.xml::workflow-store-workflow-root-column::tjeandet: ChangeSet changesets/workflow_store_workflow_root_column.xml::workflow-store-workflow-root-column::tjeandet ran successfully in 24ms |
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2018-08-11 03:01:36,664 INFO - changelog.xml: changesets/workflow_store_horizontal_db.xml::workflow-store-horizontal-db::mcovarr: Column WORKFLOW_STORE_ENTRY.RESTARTED dropped |
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2018-08-11 03:01:36,692 INFO - changelog.xml: changesets/workflow_store_horizontal_db.xml::workflow-store-horizontal-db::mcovarr: Columns CROMWELL_ID(VARCHAR(100)) added to WORKFLOW_STORE_ENTRY |
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2018-08-11 03:01:36,712 INFO - changelog.xml: changesets/workflow_store_horizontal_db.xml::workflow-store-horizontal-db::mcovarr: Columns HEARTBEAT_TIMESTAMP(TIMESTAMP) added to WORKFLOW_STORE_ENTRY |
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2018-08-11 03:01:36,713 INFO - changelog.xml: changesets/workflow_store_horizontal_db.xml::workflow-store-horizontal-db::mcovarr: ChangeSet changesets/workflow_store_horizontal_db.xml::workflow-store-horizontal-db::mcovarr ran successfully in 72ms |
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2018-08-11 03:01:36,736 INFO - changelog.xml: changesets/add_workflow_url_in_workflow_store_entry.xml::add_workflow_url_in_workflow_store_entry::sshah: Columns WORKFLOW_URL(VARCHAR(255)) added to WORKFLOW_STORE_ENTRY |
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2018-08-11 03:01:36,737 INFO - changelog.xml: changesets/add_workflow_url_in_workflow_store_entry.xml::add_workflow_url_in_workflow_store_entry::sshah: ChangeSet changesets/add_workflow_url_in_workflow_store_entry.xml::add_workflow_url_in_workflow_store_entry::sshah ran successfully in 21ms |
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2018-08-11 03:01:36,739 INFO - Successfully released change log lock |
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2018-08-11 03:01:36,803 INFO - Running with database db.url = jdbc:mysql://localhost:3306/cromwell_test?useSSL=false&rewriteBatchedStatements=true |
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2018-08-11 03:01:37,237 INFO - Successfully acquired change log lock |
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2018-08-11 03:01:37,625 INFO - Creating database history table with name: cromwell_test.SQLMETADATADATABASECHANGELOG |
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2018-08-11 03:01:37,663 INFO - Reading from cromwell_test.SQLMETADATADATABASECHANGELOG |
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2018-08-11 03:01:37,903 INFO - sql_metadata_changelog.xml: metadata_changesets/move_sql_metadata_changelog.xml::move_metadata_changelog::kshakir: Table CUSTOM_LABEL_ENTRY created |
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2018-08-11 03:01:37,936 INFO - sql_metadata_changelog.xml: metadata_changesets/move_sql_metadata_changelog.xml::move_metadata_changelog::kshakir: Table METADATA_ENTRY created |
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2018-08-11 03:01:37,950 INFO - sql_metadata_changelog.xml: metadata_changesets/move_sql_metadata_changelog.xml::move_metadata_changelog::kshakir: Table SUMMARY_STATUS_ENTRY created |
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2018-08-11 03:01:37,971 INFO - sql_metadata_changelog.xml: metadata_changesets/move_sql_metadata_changelog.xml::move_metadata_changelog::kshakir: Table WORKFLOW_METADATA_SUMMARY_ENTRY created |
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2018-08-11 03:01:37,984 INFO - sql_metadata_changelog.xml: metadata_changesets/move_sql_metadata_changelog.xml::move_metadata_changelog::kshakir: Unique constraint added to CUSTOM_LABEL_ENTRY(CUSTOM_LABEL_KEY, CUSTOM_LABEL_VALUE, WORKFLOW_EXECUTION_UUID) |
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2018-08-11 03:01:37,998 INFO - sql_metadata_changelog.xml: metadata_changesets/move_sql_metadata_changelog.xml::move_metadata_changelog::kshakir: Unique constraint added to SUMMARY_STATUS_ENTRY(SUMMARY_TABLE_NAME, SUMMARIZED_TABLE_NAME) |
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Waiting for Cromwell... |
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2018-08-11 03:01:38,011 INFO - sql_metadata_changelog.xml: metadata_changesets/move_sql_metadata_changelog.xml::move_metadata_changelog::kshakir: Unique constraint added to WORKFLOW_METADATA_SUMMARY_ENTRY(WORKFLOW_EXECUTION_UUID) |
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2018-08-11 03:01:38,045 INFO - sql_metadata_changelog.xml: metadata_changesets/move_sql_metadata_changelog.xml::move_metadata_changelog::kshakir: Foreign key constraint added to CUSTOM_LABEL_ENTRY (WORKFLOW_EXECUTION_UUID) |
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2018-08-11 03:01:38,055 INFO - sql_metadata_changelog.xml: metadata_changesets/move_sql_metadata_changelog.xml::move_metadata_changelog::kshakir: Index IX_WORKFLOW_METADATA_SUMMARY_ENTRY_WN created |
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2018-08-11 03:01:38,066 INFO - sql_metadata_changelog.xml: metadata_changesets/move_sql_metadata_changelog.xml::move_metadata_changelog::kshakir: Index IX_WORKFLOW_METADATA_SUMMARY_ENTRY_WS created |
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2018-08-11 03:01:38,075 INFO - sql_metadata_changelog.xml: metadata_changesets/move_sql_metadata_changelog.xml::move_metadata_changelog::kshakir: Index METADATA_JOB_AND_KEY_IDX created |
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2018-08-11 03:01:38,084 INFO - sql_metadata_changelog.xml: metadata_changesets/move_sql_metadata_changelog.xml::move_metadata_changelog::kshakir: Index METADATA_JOB_IDX created |
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2018-08-11 03:01:38,096 INFO - sql_metadata_changelog.xml: metadata_changesets/move_sql_metadata_changelog.xml::move_metadata_changelog::kshakir: Index METADATA_WORKFLOW_IDX created |
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2018-08-11 03:01:38,106 INFO - sql_metadata_changelog.xml: metadata_changesets/move_sql_metadata_changelog.xml::move_metadata_changelog::kshakir: Index SYS_IDX_11226 created |
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2018-08-11 03:01:38,107 INFO - sql_metadata_changelog.xml: metadata_changesets/move_sql_metadata_changelog.xml::move_metadata_changelog::kshakir: ChangeSet metadata_changesets/move_sql_metadata_changelog.xml::move_metadata_changelog::kshakir ran successfully in 338ms |
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2018-08-11 03:01:38,185 INFO - sql_metadata_changelog.xml: changesets/change_max_size_label_entry.xml::change_max_size_for_key_and_value_in_label::sshah: CUSTOM_LABEL_ENTRY.CUSTOM_LABEL_KEY datatype was changed to VARCHAR(255) |
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2018-08-11 03:01:38,220 INFO - sql_metadata_changelog.xml: changesets/change_max_size_label_entry.xml::change_max_size_for_key_and_value_in_label::sshah: CUSTOM_LABEL_ENTRY.CUSTOM_LABEL_VALUE datatype was changed to VARCHAR(255) |
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2018-08-11 03:01:38,220 INFO - sql_metadata_changelog.xml: changesets/change_max_size_label_entry.xml::change_max_size_for_key_and_value_in_label::sshah: ChangeSet changesets/change_max_size_label_entry.xml::change_max_size_for_key_and_value_in_label::sshah ran successfully in 65ms |
|
2018-08-11 03:01:38,233 INFO - sql_metadata_changelog.xml: metadata_changesets/delete_duplicate_custom_labels.xml::delete_duplicate_custom_labels::kshakir: Data deleted from CUSTOM_LABEL_ENTRY |
|
2018-08-11 03:01:38,241 INFO - sql_metadata_changelog.xml: metadata_changesets/delete_duplicate_custom_labels.xml::delete_duplicate_custom_labels::kshakir: Unique constraint UC_CUSTOM_LABEL_ENTRY_CLK_CLV_WEU dropped from CUSTOM_LABEL_ENTRY |
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2018-08-11 03:01:38,251 INFO - sql_metadata_changelog.xml: metadata_changesets/delete_duplicate_custom_labels.xml::delete_duplicate_custom_labels::kshakir: Unique constraint added to CUSTOM_LABEL_ENTRY(CUSTOM_LABEL_KEY, WORKFLOW_EXECUTION_UUID) |
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2018-08-11 03:01:38,252 INFO - sql_metadata_changelog.xml: metadata_changesets/delete_duplicate_custom_labels.xml::delete_duplicate_custom_labels::kshakir: ChangeSet metadata_changesets/delete_duplicate_custom_labels.xml::delete_duplicate_custom_labels::kshakir ran successfully in 22ms |
|
2018-08-11 03:01:38,282 INFO - sql_metadata_changelog.xml: metadata_changesets/add_submission_timestamp_metadata_summary.xml::add_submission_timestamp_in_metadata_entry::sshah: Columns SUBMISSION_TIMESTAMP(DATETIME(6)) added to WORKFLOW_METADATA_SUMMARY_ENTRY |
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2018-08-11 03:01:38,283 INFO - sql_metadata_changelog.xml: metadata_changesets/add_submission_timestamp_metadata_summary.xml::add_submission_timestamp_in_metadata_entry::sshah: ChangeSet metadata_changesets/add_submission_timestamp_metadata_summary.xml::add_submission_timestamp_in_metadata_entry::sshah ran successfully in 27ms |
|
2018-08-11 03:01:38,285 INFO - Successfully released change log lock |
|
2018-08-11 03:01:39,772 WARN - Unrecognized configuration key(s) for Jes: dockerhub.auth, dockerhub.key-name, filesystems.gcs.project |
|
2018-08-11 03:01:40,374 WARN - Unrecognized configuration key(s) for Jes: filesystems.gcs.project |
|
2018-08-11 03:01:40,388 WARN - Unrecognized configuration key(s) for Jes: filesystems.gcs.project |
|
2018-08-11 03:01:40,403 WARN - Unrecognized configuration key(s) for Jes: dockerhub.auth, dockerhub.key-name, filesystems.gcs.project |
|
2018-08-11 03:01:40,442 WARN - Unrecognized configuration key(s) for Jes: dockerhub.auth, dockerhub.key-name, filesystems.gcs.project |
|
Waiting for Cromwell... |
|
2018-08-11 03:01:43,064 INFO - Slf4jLogger started |
|
2018-08-11 03:01:44,210 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - Workflow heartbeat configuration: |
|
{ |
|
"cromwellId" : "cromid-4ed3d08", |
|
"heartbeatInterval" : "2 minutes", |
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"ttl" : "10 minutes", |
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"writeBatchSize" : 10000, |
|
"writeThreshold" : 10000 |
|
} |
|
2018-08-11 03:01:44,601 cromwell-system-akka.dispatchers.service-dispatcher-12 INFO - Metadata summary refreshing every 2 seconds. |
|
2018-08-11 03:01:44,735 cromwell-system-akka.actor.default-dispatcher-5 INFO - KvWriteActor configured to flush with batch size 200 and process rate 5 seconds. |
|
2018-08-11 03:01:44,742 cromwell-system-akka.dispatchers.service-dispatcher-10 INFO - WriteMetadataActor configured to flush with batch size 200 and process rate 5 seconds. |
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2018-08-11 03:01:44,846 cromwell-system-akka.dispatchers.engine-dispatcher-9 INFO - JobStoreWriterActor configured to flush with batch size 1000 and process rate 1 second. |
|
2018-08-11 03:01:44,919 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - CallCacheWriteActor configured to flush with batch size 100 and process rate 3 seconds. |
|
Waiting for Cromwell... |
|
2018-08-11 03:01:48,761 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - JobExecutionTokenDispenser - Distribution rate: 50 per 1 seconds. |
|
2018-08-11 03:01:49,027 cromwell-system-akka.dispatchers.backend-dispatcher-42 INFO - JES batch polling interval is 33333 milliseconds |
|
2018-08-11 03:01:49,038 cromwell-system-akka.dispatchers.backend-dispatcher-43 INFO - JES batch polling interval is 33333 milliseconds |
|
2018-08-11 03:01:49,066 cromwell-system-akka.dispatchers.backend-dispatcher-40 INFO - JES batch polling interval is 33333 milliseconds |
|
2018-08-11 03:01:49,072 cromwell-system-akka.dispatchers.backend-dispatcher-42 INFO - JES batch polling interval is 33333 milliseconds |
|
2018-08-11 03:01:49,073 cromwell-system-akka.dispatchers.backend-dispatcher-42 INFO - JES batch polling interval is 33333 milliseconds |
|
2018-08-11 03:01:49,073 cromwell-system-akka.dispatchers.backend-dispatcher-42 INFO - JES batch polling interval is 33333 milliseconds |
|
2018-08-11 03:01:49,073 cromwell-system-akka.dispatchers.backend-dispatcher-42 INFO - JES batch polling interval is 33333 milliseconds |
|
2018-08-11 03:01:49,074 cromwell-system-akka.dispatchers.backend-dispatcher-42 INFO - JES batch polling interval is 33333 milliseconds |
|
2018-08-11 03:01:49,074 cromwell-system-akka.dispatchers.backend-dispatcher-42 INFO - JES batch polling interval is 33333 milliseconds |
|
2018-08-11 03:01:49,084 cromwell-system-akka.dispatchers.backend-dispatcher-42 INFO - JES batch polling interval is 33333 milliseconds |
|
2018-08-11 03:01:49,084 cromwell-system-akka.dispatchers.backend-dispatcher-42 INFO - JES batch polling interval is 33333 milliseconds |
|
2018-08-11 03:01:49,085 cromwell-system-akka.dispatchers.backend-dispatcher-42 INFO - JES batch polling interval is 33333 milliseconds |
|
2018-08-11 03:01:49,085 cromwell-system-akka.dispatchers.backend-dispatcher-42 INFO - JES batch polling interval is 33333 milliseconds |
|
2018-08-11 03:01:49,085 cromwell-system-akka.dispatchers.backend-dispatcher-42 INFO - JES batch polling interval is 33333 milliseconds |
|
2018-08-11 03:01:49,086 cromwell-system-akka.dispatchers.backend-dispatcher-42 INFO - JES batch polling interval is 33333 milliseconds |
|
2018-08-11 03:01:49,142 cromwell-system-akka.dispatchers.backend-dispatcher-41 INFO - PAPIQueryManager Running with 3 workers |
|
2018-08-11 03:01:49,144 cromwell-system-akka.dispatchers.backend-dispatcher-38 INFO - PAPIQueryManager Running with 3 workers |
|
2018-08-11 03:01:49,145 cromwell-system-akka.dispatchers.backend-dispatcher-37 INFO - PAPIQueryManager Running with 3 workers |
|
2018-08-11 03:01:49,145 cromwell-system-akka.dispatchers.backend-dispatcher-39 INFO - PAPIQueryManager Running with 3 workers |
|
2018-08-11 03:01:49,145 cromwell-system-akka.dispatchers.backend-dispatcher-40 INFO - PAPIQueryManager Running with 3 workers |
|
2018-08-11 03:01:50,587 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - Cromwell 35-24a8eb1-SNAP service started on 0.0.0.0:8008... |
|
Cromwell is running |
|
2018-08-11 03:01:54,604 INFO - Error reporter loaded: sentry to https://sentry.io |
|
2018-08-11 03:01:54,613 INFO - Error reporter loaded: slf4j to error |
|
2018-08-11 03:01:54,616 INFO - Error retry count: 2 |
|
[36mDiscovery completed in 1 minute, 29 seconds.[0m |
|
[36mRun starting. Expected test count is: 214[0m |
|
2018-08-11 03:01:57,237 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - Unspecified type (Unspecified version) workflow 6de9f48d-48df-41b7-be56-a22257793872 submitted |
|
2018-08-11 03:01:57,247 cromwell-system-akka.dispatchers.api-dispatcher-58 INFO - CWL (v1.0) workflow d3618ad6-432e-4dac-963e-541cb77de944 submitted |
|
2018-08-11 03:01:57,696 cromwell-system-akka.dispatchers.api-dispatcher-58 INFO - WDL (1.0) workflow 7ca193a0-b723-485e-ade2-c2fa8d115f5d submitted |
|
2018-08-11 03:01:57,929 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - 3 new workflows fetched |
|
2018-08-11 03:01:57,929 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(d3618ad6-432e-4dac-963e-541cb77de944) |
|
2018-08-11 03:01:57,956 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-d3618ad6-432e-4dac-963e-541cb77de944 |
|
2018-08-11 03:01:57,973 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(6de9f48d-48df-41b7-be56-a22257793872) |
|
2018-08-11 03:01:57,991 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-6de9f48d-48df-41b7-be56-a22257793872 |
|
2018-08-11 03:01:57,991 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(7ca193a0-b723-485e-ade2-c2fa8d115f5d) |
|
2018-08-11 03:01:57,991 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-7ca193a0-b723-485e-ade2-c2fa8d115f5d |
|
2018-08-11 03:01:57,992 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - Retrieved 3 workflows from the WorkflowStoreActor |
|
2018-08-11 03:01:58,020 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - WorkflowStoreHeartbeatWriteActor configured to flush with batch size 10000 and process rate 2 minutes. |
|
2018-08-11 03:01:58,027 cromwell-system-akka.dispatchers.api-dispatcher-58 INFO - CWL (v1.0) workflow 12d310ee-65df-4ed3-9ac8-8ed5316f7722 submitted |
|
2018-08-11 03:01:58,697 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - Unspecified type (Unspecified version) workflow 9ba48877-5476-478c-8343-e7cfecccf1b7 submitted |
|
2018-08-11 03:01:58,787 cromwell-system-akka.dispatchers.engine-dispatcher-9 INFO - MaterializeWorkflowDescriptorActor [UUID(7ca193a0)]: Parsing workflow as WDL 1.0 |
|
2018-08-11 03:01:58,824 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(d3618ad6)]: Parsing workflow as CWL v1.0 |
|
2018-08-11 03:01:58,850 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(6de9f48d)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:01:58,991 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - 2 new workflows fetched |
|
2018-08-11 03:01:58,992 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowManagerActor Starting workflow UUID(12d310ee-65df-4ed3-9ac8-8ed5316f7722) |
|
2018-08-11 03:01:58,992 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowManagerActor Successfully started WorkflowActor-12d310ee-65df-4ed3-9ac8-8ed5316f7722 |
|
2018-08-11 03:01:58,992 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowManagerActor Starting workflow UUID(9ba48877-5476-478c-8343-e7cfecccf1b7) |
|
2018-08-11 03:01:58,992 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowManagerActor Successfully started WorkflowActor-9ba48877-5476-478c-8343-e7cfecccf1b7 |
|
2018-08-11 03:01:58,992 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - Retrieved 2 workflows from the WorkflowStoreActor |
|
2018-08-11 03:01:59,000 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - MaterializeWorkflowDescriptorActor [UUID(9ba48877)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:01:59,004 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - MaterializeWorkflowDescriptorActor [UUID(12d310ee)]: Parsing workflow as CWL v1.0 |
|
2018-08-11 03:01:59,043 INFO - Pre-Processing /tmp/d3618ad6-432e-4dac-963e-541cb77de944.temp.1434139329128154575/d3618ad6-432e-4dac-963e-541cb77de944.cwl |
|
2018-08-11 03:01:59,043 INFO - Pre-Processing /tmp/12d310ee-65df-4ed3-9ac8-8ed5316f7722.temp.4363090322790382598/12d310ee-65df-4ed3-9ac8-8ed5316f7722.cwl |
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2018-08-11 03:01:59,512 cromwell-system-akka.dispatchers.api-dispatcher-58 INFO - WDL (1.0) workflow bfe074e7-60eb-4d8b-9212-d001d9f8cef6 submitted |
|
2018-08-11 03:02:00,022 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - 1 new workflows fetched |
|
2018-08-11 03:02:00,023 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor Starting workflow UUID(bfe074e7-60eb-4d8b-9212-d001d9f8cef6) |
|
2018-08-11 03:02:00,023 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor Successfully started WorkflowActor-bfe074e7-60eb-4d8b-9212-d001d9f8cef6 |
|
2018-08-11 03:02:00,023 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - Retrieved 1 workflows from the WorkflowStoreActor |
|
2018-08-11 03:02:00,032 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(bfe074e7)]: Parsing workflow as WDL 1.0 |
|
2018-08-11 03:02:00,594 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - Unspecified type (Unspecified version) workflow dbaaf524-3e51-42a4-a4a3-acabad947aae submitted |
|
2018-08-11 03:02:01,053 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - 1 new workflows fetched |
|
2018-08-11 03:02:01,053 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor Starting workflow UUID(dbaaf524-3e51-42a4-a4a3-acabad947aae) |
|
2018-08-11 03:02:01,053 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor Successfully started WorkflowActor-dbaaf524-3e51-42a4-a4a3-acabad947aae |
|
2018-08-11 03:02:01,053 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - Retrieved 1 workflows from the WorkflowStoreActor |
|
2018-08-11 03:02:01,695 cromwell-system-akka.dispatchers.api-dispatcher-58 INFO - Unspecified type (Unspecified version) workflow 1fc6af14-ab85-453d-b6dc-297f3cf9cf65 submitted |
|
2018-08-11 03:02:01,956 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(bfe074e7)]: Call-to-Backend assignments: draft3_read_file_limits.readMap -> Papi, draft3_read_file_limits.readInt -> Papi, draft3_read_file_limits.readFloat -> Papi, draft3_read_file_limits.readString -> Papi, draft3_read_file_limits.readObject -> Papi, draft3_read_file_limits.readLines -> Papi, draft3_read_file_limits.readTsv -> Papi, draft3_read_file_limits.readBoolean -> Papi, draft3_read_file_limits.readJson -> Papi, draft3_read_file_limits.readObjects -> Papi |
|
2018-08-11 03:02:01,990 cromwell-system-akka.dispatchers.engine-dispatcher-9 INFO - MaterializeWorkflowDescriptorActor [UUID(7ca193a0)]: Call-to-Backend assignments: |
|
2018-08-11 03:02:01,993 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - MaterializeWorkflowDescriptorActor [UUID(9ba48877)]: Call-to-Backend assignments: floating_tags.findAgain -> Papi, floating_tags.echoAgain -> Papi, floating_tags.echo -> Papi, floating_tags.find -> Papi |
|
2018-08-11 03:02:02,083 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(6de9f48d)]: Call-to-Backend assignments: restart_while_failing.B1 -> Papi, restart_while_failing.A -> Papi, restart_while_failing.sleep_exit -> Papi, restart_while_failing.B -> Papi, restart_while_failing.B2 -> Papi |
|
2018-08-11 03:02:02,088 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - 1 new workflows fetched |
|
2018-08-11 03:02:02,090 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor Starting workflow UUID(1fc6af14-ab85-453d-b6dc-297f3cf9cf65) |
|
2018-08-11 03:02:02,095 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor Successfully started WorkflowActor-1fc6af14-ab85-453d-b6dc-297f3cf9cf65 |
|
2018-08-11 03:02:02,095 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - Retrieved 1 workflows from the WorkflowStoreActor |
|
[32mSequentialTestCaseSpec:[0m |
|
2018-08-11 03:02:02,855 cromwell-system-akka.dispatchers.api-dispatcher-61 INFO - Unspecified type (Unspecified version) workflow 819450a6-f9d2-4e8b-a136-27fb84f46077 submitted |
|
2018-08-11 03:02:03,140 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - 1 new workflows fetched |
|
2018-08-11 03:02:03,140 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowManagerActor Starting workflow UUID(819450a6-f9d2-4e8b-a136-27fb84f46077) |
|
2018-08-11 03:02:03,140 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowManagerActor Successfully started WorkflowActor-819450a6-f9d2-4e8b-a136-27fb84f46077 |
|
2018-08-11 03:02:03,140 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - Retrieved 1 workflows from the WorkflowStoreActor |
|
2018-08-11 03:02:03,144 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(819450a6)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:02:03,379 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(819450a6)]: Call-to-Backend assignments: length.lens -> Papi |
|
2018-08-11 03:02:04,025 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - Unspecified type (Unspecified version) workflow 62091ef4-05a2-4b3d-83d6-c084fd798833 submitted |
|
2018-08-11 03:02:04,162 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - 1 new workflows fetched |
|
2018-08-11 03:02:04,162 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor Starting workflow UUID(62091ef4-05a2-4b3d-83d6-c084fd798833) |
|
2018-08-11 03:02:04,162 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor Successfully started WorkflowActor-62091ef4-05a2-4b3d-83d6-c084fd798833 |
|
2018-08-11 03:02:04,162 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - Retrieved 1 workflows from the WorkflowStoreActor |
|
2018-08-11 03:02:04,168 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(62091ef4)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:02:04,449 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - MaterializeWorkflowDescriptorActor [UUID(dbaaf524)]: Parsing workflow as WDL Biscayne |
|
2018-08-11 03:02:04,455 cromwell-system-akka.dispatchers.engine-dispatcher-9 INFO - MaterializeWorkflowDescriptorActor [UUID(1fc6af14)]: Parsing workflow as WDL Biscayne |
|
2018-08-11 03:02:04,825 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(62091ef4)]: Call-to-Backend assignments: selection_functions.makeStringTrue -> Papi, selection_functions.makeStringFalse -> Papi |
|
2018-08-11 03:02:05,111 cromwell-system-akka.dispatchers.api-dispatcher-61 INFO - Unspecified type (Unspecified version) workflow fdc9eff4-89c2-4454-8ac9-c29c0caa4598 submitted |
|
2018-08-11 03:02:05,184 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - 1 new workflows fetched |
|
2018-08-11 03:02:05,184 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Starting workflow UUID(fdc9eff4-89c2-4454-8ac9-c29c0caa4598) |
|
2018-08-11 03:02:05,184 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Successfully started WorkflowActor-fdc9eff4-89c2-4454-8ac9-c29c0caa4598 |
|
2018-08-11 03:02:05,184 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - Retrieved 1 workflows from the WorkflowStoreActor |
|
2018-08-11 03:02:05,189 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(fdc9eff4)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:02:05,316 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - MaterializeWorkflowDescriptorActor [UUID(dbaaf524)]: Call-to-Backend assignments: foo_wf.add5 -> Papi |
|
2018-08-11 03:02:05,355 cromwell-system-akka.dispatchers.engine-dispatcher-9 INFO - MaterializeWorkflowDescriptorActor [UUID(1fc6af14)]: Call-to-Backend assignments: foo_wf.add5 -> Papi |
|
2018-08-11 03:02:05,540 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(fdc9eff4)]: Call-to-Backend assignments: space.goodbye -> Papi, space.hello -> Papi |
|
2018-08-11 03:02:05,593 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowExecutionActor-819450a6-f9d2-4e8b-a136-27fb84f46077 [UUID(819450a6)]: Starting length.lens |
|
2018-08-11 03:02:05,607 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowExecutionActor-bfe074e7-60eb-4d8b-9212-d001d9f8cef6 [UUID(bfe074e7)]: Starting draft3_read_file_limits.readMap, draft3_read_file_limits.readInt, draft3_read_file_limits.readFloat, draft3_read_file_limits.readString, draft3_read_file_limits.readObject, draft3_read_file_limits.readLines, draft3_read_file_limits.readTsv, draft3_read_file_limits.readBoolean, draft3_read_file_limits.readJson, draft3_read_file_limits.readObjects |
|
2018-08-11 03:02:06,179 cromwell-system-akka.dispatchers.api-dispatcher-61 INFO - WDL (1.0) workflow ff0330d6-d054-44e3-a5dd-cd0212b91595 submitted |
|
2018-08-11 03:02:06,220 cromwell-system-akka.dispatchers.engine-dispatcher-9 INFO - 1 new workflows fetched |
|
2018-08-11 03:02:06,220 cromwell-system-akka.dispatchers.engine-dispatcher-9 INFO - WorkflowManagerActor Starting workflow UUID(ff0330d6-d054-44e3-a5dd-cd0212b91595) |
|
2018-08-11 03:02:06,220 cromwell-system-akka.dispatchers.engine-dispatcher-9 INFO - WorkflowManagerActor Successfully started WorkflowActor-ff0330d6-d054-44e3-a5dd-cd0212b91595 |
|
2018-08-11 03:02:06,220 cromwell-system-akka.dispatchers.engine-dispatcher-9 INFO - Retrieved 1 workflows from the WorkflowStoreActor |
|
2018-08-11 03:02:06,227 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - MaterializeWorkflowDescriptorActor [UUID(ff0330d6)]: Parsing workflow as WDL 1.0 |
|
2018-08-11 03:02:06,404 cromwell-system-akka.dispatchers.engine-dispatcher-9 INFO - WorkflowExecutionActor-7ca193a0-b723-485e-ade2-c2fa8d115f5d [UUID(7ca193a0)]: Workflow passthrough_value complete. Final Outputs: |
|
{ |
|
"passthrough_value.z": 25 |
|
} |
|
[32mStandardTestCaseSpec:[0m |
|
[33m- should successfully run super_massive_array_output !!! IGNORED !!![0m |
|
[33m- should fail during execution missing_input_failure_papiv1 !!! IGNORED !!![0m |
|
2018-08-11 03:02:06,564 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - MaterializeWorkflowDescriptorActor [UUID(ff0330d6)]: Call-to-Backend assignments: requester_pays_engine_functions.functions -> Papi |
|
2018-08-11 03:02:06,618 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowExecutionActor-6de9f48d-48df-41b7-be56-a22257793872 [UUID(6de9f48d)]: Starting restart_while_failing.A, restart_while_failing.B |
|
2018-08-11 03:02:06,802 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor WorkflowActor-7ca193a0-b723-485e-ade2-c2fa8d115f5d is in a terminal state: WorkflowSucceededState |
|
2018-08-11 03:02:07,346 cromwell-system-akka.dispatchers.api-dispatcher-61 INFO - WDL (1.0) workflow 059afb47-b7a6-45d0-bf55-f1ce03def37b submitted |
|
2018-08-11 03:02:08,002 cromwell-system-akka.dispatchers.api-dispatcher-61 INFO - Unspecified type (Unspecified version) workflow 45af4273-a746-45ac-9f31-1fd0c6421ea5 submitted |
|
2018-08-11 03:02:08,151 cromwell-system-akka.dispatchers.backend-dispatcher-43 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(bfe074e7)draft3_read_file_limits.readString:NA:1]: `dd if=/dev/zero of=file_256k bs=256k count=1` |
|
2018-08-11 03:02:08,171 cromwell-system-akka.dispatchers.backend-dispatcher-38 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(819450a6)length.lens:NA:1]: `echo whatevs` |
|
2018-08-11 03:02:08,172 cromwell-system-akka.dispatchers.backend-dispatcher-39 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(bfe074e7)draft3_read_file_limits.readMap:NA:1]: `dd if=/dev/zero of=file_256k bs=256k count=1` |
|
2018-08-11 03:02:08,271 cromwell-system-akka.dispatchers.engine-dispatcher-9 INFO - 2 new workflows fetched |
|
2018-08-11 03:02:08,271 cromwell-system-akka.dispatchers.engine-dispatcher-9 INFO - WorkflowManagerActor Starting workflow UUID(059afb47-b7a6-45d0-bf55-f1ce03def37b) |
|
2018-08-11 03:02:08,271 cromwell-system-akka.dispatchers.engine-dispatcher-9 INFO - WorkflowManagerActor Successfully started WorkflowActor-059afb47-b7a6-45d0-bf55-f1ce03def37b |
|
2018-08-11 03:02:08,271 cromwell-system-akka.dispatchers.engine-dispatcher-9 INFO - WorkflowManagerActor Starting workflow UUID(45af4273-a746-45ac-9f31-1fd0c6421ea5) |
|
2018-08-11 03:02:08,272 cromwell-system-akka.dispatchers.engine-dispatcher-9 INFO - WorkflowManagerActor Successfully started WorkflowActor-45af4273-a746-45ac-9f31-1fd0c6421ea5 |
|
2018-08-11 03:02:08,272 cromwell-system-akka.dispatchers.engine-dispatcher-9 INFO - Retrieved 2 workflows from the WorkflowStoreActor |
|
2018-08-11 03:02:08,279 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - MaterializeWorkflowDescriptorActor [UUID(45af4273)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:02:08,298 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(059afb47)]: Parsing workflow as WDL 1.0 |
|
2018-08-11 03:02:08,701 cromwell-system-akka.dispatchers.backend-dispatcher-38 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(bfe074e7)draft3_read_file_limits.readInt:NA:1]: `dd if=/dev/zero of=file_256k bs=256k count=1` |
|
2018-08-11 03:02:08,715 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(059afb47)]: Call-to-Backend assignments: optional_declarations.strings2 -> Papi, optional_declarations.strings -> Papi |
|
2018-08-11 03:02:08,797 cromwell-system-akka.dispatchers.engine-dispatcher-9 INFO - WorkflowExecutionActor-6de9f48d-48df-41b7-be56-a22257793872 [UUID(6de9f48d)]: Starting restart_while_failing.sleep_exit (5 shards) |
|
2018-08-11 03:02:08,827 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - MaterializeWorkflowDescriptorActor [UUID(45af4273)]: Call-to-Backend assignments: ifs_in_scatters.mirror -> Papi, ifs_in_scatters.init -> Papi, ifs_in_scatters.validate_int -> Papi |
|
2018-08-11 03:02:09,038 cromwell-system-akka.dispatchers.backend-dispatcher-43 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(bfe074e7)draft3_read_file_limits.readObject:NA:1]: `dd if=/dev/zero of=file_256k bs=256k count=1` |
|
…2018-08-11 03:02:09,128 cromwell-system-akka.dispatchers.backend-dispatcher-39 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(6de9f48d)restart_while_failing.B:NA:1]: `sleep 1 |
|
exit 0` |
|
2018-08-11 03:02:09,154 cromwell-system-akka.dispatchers.backend-dispatcher-39 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(bfe074e7)draft3_read_file_limits.readLines:NA:1]: `dd if=/dev/zero of=file_256k bs=256k count=1` |
|
2018-08-11 03:02:09,203 cromwell-system-akka.dispatchers.api-dispatcher-61 INFO - Unspecified type (Unspecified version) workflow c09bd460-da85-453c-a23a-3662f815d33d submitted |
|
2018-08-11 03:02:09,468 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - 1 new workflows fetched |
|
2018-08-11 03:02:09,469 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowManagerActor Starting workflow UUID(c09bd460-da85-453c-a23a-3662f815d33d) |
|
2018-08-11 03:02:09,469 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowManagerActor Successfully started WorkflowActor-c09bd460-da85-453c-a23a-3662f815d33d |
|
2018-08-11 03:02:09,469 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - Retrieved 1 workflows from the WorkflowStoreActor |
|
2018-08-11 03:02:09,560 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - MaterializeWorkflowDescriptorActor [UUID(c09bd460)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:02:09,661 cromwell-system-akka.dispatchers.backend-dispatcher-43 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(bfe074e7)draft3_read_file_limits.readBoolean:NA:1]: `dd if=/dev/zero of=file_256k bs=256k count=1` |
|
2018-08-11 03:02:09,669 cromwell-system-akka.dispatchers.backend-dispatcher-39 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(bfe074e7)draft3_read_file_limits.readFloat:NA:1]: `dd if=/dev/zero of=file_256k bs=256k count=1` |
|
2018-08-11 03:02:09,696 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - MaterializeWorkflowDescriptorActor [UUID(c09bd460)]: Call-to-Backend assignments: filearrayoutput.createFileArray -> Papi, filearrayoutput.combiner -> Papi |
|
2018-08-11 03:02:09,946 cromwell-system-akka.dispatchers.backend-dispatcher-43 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(bfe074e7)draft3_read_file_limits.readObjects:NA:1]: `dd if=/dev/zero of=file_256k bs=256k count=1` |
|
2018-08-11 03:02:09,956 cromwell-system-akka.dispatchers.backend-dispatcher-39 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(bfe074e7)draft3_read_file_limits.readJson:NA:1]: `dd if=/dev/zero of=file_256k bs=256k count=1` |
|
2018-08-11 03:02:10,065 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - Unspecified type (Unspecified version) workflow bcfc89df-a09b-4366-b3fd-9ca3ad53437a submitted |
|
2018-08-11 03:02:10,721 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - 1 new workflows fetched |
|
2018-08-11 03:02:10,722 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowManagerActor Starting workflow UUID(bcfc89df-a09b-4366-b3fd-9ca3ad53437a) |
|
2018-08-11 03:02:10,722 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowManagerActor Successfully started WorkflowActor-bcfc89df-a09b-4366-b3fd-9ca3ad53437a |
|
2018-08-11 03:02:10,722 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - Retrieved 1 workflows from the WorkflowStoreActor |
|
2018-08-11 03:02:10,722 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - Unspecified type (Unspecified version) workflow 78f788f6-f7be-411b-b507-87d36e8c153b submitted |
|
2018-08-11 03:02:10,795 cromwell-system-akka.dispatchers.api-dispatcher-61 INFO - Unspecified type (Unspecified version) workflow 26d179c7-8d97-4707-8a5b-ae99587aad82 submitted |
|
2018-08-11 03:02:10,859 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - MaterializeWorkflowDescriptorActor [UUID(bcfc89df)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:02:10,876 cromwell-system-akka.dispatchers.backend-dispatcher-43 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(bfe074e7)draft3_read_file_limits.readTsv:NA:1]: `dd if=/dev/zero of=file_256k bs=256k count=1` |
|
2018-08-11 03:02:11,171 cromwell-system-akka.dispatchers.backend-dispatcher-39 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(6de9f48d)restart_while_failing.A:NA:1]: `sleep 300 |
|
exit 1` |
|
2018-08-11 03:02:11,186 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - MaterializeWorkflowDescriptorActor [UUID(bcfc89df)]: Call-to-Backend assignments: chain_fail.conditional_fail -> Papi, chain_fail.fail -> Papi, chain_fail.scatter_fail -> Papi, wf_hello.hello -> Papi |
|
2018-08-11 03:02:11,210 cromwell-system-akka.dispatchers.backend-dispatcher-43 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(6de9f48d)restart_while_failing.sleep_exit:3:1]: `sleep 60 |
|
exit 0` |
|
2018-08-11 03:02:11,267 cromwell-system-akka.dispatchers.backend-dispatcher-43 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(6de9f48d)restart_while_failing.sleep_exit:2:1]: `sleep 20 |
|
exit 0` |
|
2018-08-11 03:02:11,426 cromwell-system-akka.dispatchers.api-dispatcher-61 INFO - Unspecified type (Unspecified version) workflow 4fe7437b-4df5-479d-9ae5-ecf3a0261322 submitted |
|
2018-08-11 03:02:11,590 cromwell-system-akka.dispatchers.backend-dispatcher-39 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(6de9f48d)restart_while_failing.sleep_exit:1:1]: `sleep 60 |
|
exit 0` |
|
2018-08-11 03:02:11,724 cromwell-system-akka.dispatchers.backend-dispatcher-39 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(6de9f48d)restart_while_failing.sleep_exit:0:1]: `sleep 1 |
|
exit 0` |
|
2018-08-11 03:02:11,742 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - 3 new workflows fetched |
|
2018-08-11 03:02:11,742 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowManagerActor Starting workflow UUID(78f788f6-f7be-411b-b507-87d36e8c153b) |
|
2018-08-11 03:02:11,743 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowManagerActor Successfully started WorkflowActor-78f788f6-f7be-411b-b507-87d36e8c153b |
|
2018-08-11 03:02:11,743 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowManagerActor Starting workflow UUID(26d179c7-8d97-4707-8a5b-ae99587aad82) |
|
2018-08-11 03:02:11,743 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowManagerActor Successfully started WorkflowActor-26d179c7-8d97-4707-8a5b-ae99587aad82 |
|
2018-08-11 03:02:11,743 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowManagerActor Starting workflow UUID(4fe7437b-4df5-479d-9ae5-ecf3a0261322) |
|
2018-08-11 03:02:11,743 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowManagerActor Successfully started WorkflowActor-4fe7437b-4df5-479d-9ae5-ecf3a0261322 |
|
2018-08-11 03:02:11,743 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - Retrieved 3 workflows from the WorkflowStoreActor |
|
2018-08-11 03:02:11,756 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(4fe7437b)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:02:11,757 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - MaterializeWorkflowDescriptorActor [UUID(78f788f6)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:02:11,761 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(26d179c7)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:02:11,833 cromwell-system-akka.dispatchers.backend-dispatcher-39 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(6de9f48d)restart_while_failing.sleep_exit:4:1]: `sleep 30 |
|
exit 0` |
|
2018-08-11 03:02:11,903 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - MaterializeWorkflowDescriptorActor [UUID(78f788f6)]: Call-to-Backend assignments: wdl_function_locations.wdl_function_locations_i -> Papi, wdl_function_locations.wdl_function_locations_ii -> Papi |
|
2018-08-11 03:02:11,908 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(4fe7437b)]: Call-to-Backend assignments: arrays_scatters_ifs.printInt -> Papi |
|
2018-08-11 03:02:11,972 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(26d179c7)]: Call-to-Backend assignments: cacheWithinWF.one -> Papi, cacheWithinWF.two -> Papi, cacheWithinWF.twoAgain -> Papi |
|
2018-08-11 03:02:12,096 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - CWL (v1.0) workflow 80b836dc-2a63-49dd-86ee-b065c6e08cf0 submitted |
|
2018-08-11 03:02:12,563 cromwell-system-akka.dispatchers.api-dispatcher-61 INFO - Unspecified type (Unspecified version) workflow 80bcbca9-d880-4e50-ad3c-a8353a8efe64 submitted |
|
2018-08-11 03:02:12,730 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - MaterializeWorkflowDescriptorActor [UUID(12d310ee)]: Call-to-Backend assignments: iwdr_inline_file -> Papi |
|
2018-08-11 03:02:12,731 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(d3618ad6)]: Call-to-Backend assignments: iwdr_input_string_function -> Papi |
|
2018-08-11 03:02:12,769 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - 2 new workflows fetched |
|
2018-08-11 03:02:12,769 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(80b836dc-2a63-49dd-86ee-b065c6e08cf0) |
|
2018-08-11 03:02:12,769 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-80b836dc-2a63-49dd-86ee-b065c6e08cf0 |
|
2018-08-11 03:02:12,769 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(80bcbca9-d880-4e50-ad3c-a8353a8efe64) |
|
2018-08-11 03:02:12,769 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-80bcbca9-d880-4e50-ad3c-a8353a8efe64 |
|
2018-08-11 03:02:12,770 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - Retrieved 2 workflows from the WorkflowStoreActor |
|
2018-08-11 03:02:12,776 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - MaterializeWorkflowDescriptorActor [UUID(80bcbca9)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:02:12,778 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(80b836dc)]: Parsing workflow as CWL v1.0 |
|
2018-08-11 03:02:12,785 INFO - Pre-Processing /tmp/80b836dc-2a63-49dd-86ee-b065c6e08cf0.temp.9014579877211659533/80b836dc-2a63-49dd-86ee-b065c6e08cf0.cwl |
|
2018-08-11 03:02:12,844 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - MaterializeWorkflowDescriptorActor [UUID(80bcbca9)]: Call-to-Backend assignments: woot.notroot -> Papi |
|
[32m- should successfully run draft3_passthrough_value (15 seconds, 621 milliseconds)[0m |
|
2018-08-11 03:02:13,164 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowExecutionActor-c09bd460-da85-453c-a23a-3662f815d33d [UUID(c09bd460)]: Starting filearrayoutput.createFileArray |
|
2018-08-11 03:02:13,173 cromwell-system-akka.dispatchers.api-dispatcher-61 INFO - Unspecified type (Unspecified version) workflow 1649355b-fec9-427b-b442-9f30b829b457 submitted |
|
2018-08-11 03:02:13,482 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowExecutionActor-45af4273-a746-45ac-9f31-1fd0c6421ea5 [UUID(45af4273)]: Starting ifs_in_scatters.init |
|
2018-08-11 03:02:13,629 cromwell-system-akka.dispatchers.api-dispatcher-61 INFO - Unspecified type (Unspecified version) workflow 18d037d0-63d7-4ff3-a7c1-4dbdc20ce058 submitted |
|
2018-08-11 03:02:13,789 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - 2 new workflows fetched |
|
2018-08-11 03:02:13,789 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor Starting workflow UUID(1649355b-fec9-427b-b442-9f30b829b457) |
|
2018-08-11 03:02:13,796 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor Successfully started WorkflowActor-1649355b-fec9-427b-b442-9f30b829b457 |
|
2018-08-11 03:02:13,796 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor Starting workflow UUID(18d037d0-63d7-4ff3-a7c1-4dbdc20ce058) |
|
2018-08-11 03:02:13,796 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor Successfully started WorkflowActor-18d037d0-63d7-4ff3-a7c1-4dbdc20ce058 |
|
2018-08-11 03:02:13,796 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - Retrieved 2 workflows from the WorkflowStoreActor |
|
2018-08-11 03:02:13,812 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - MaterializeWorkflowDescriptorActor [UUID(1649355b)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:02:13,825 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(18d037d0)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:02:13,845 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(18d037d0)]: Call-to-Backend assignments: retry_for_me.broken_task -> Papi |
|
2018-08-11 03:02:13,924 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - MaterializeWorkflowDescriptorActor [UUID(1649355b)]: Call-to-Backend assignments: mirror_mirror_on_the_wall.mkFile -> Papi, mirror_mirror_on_the_wall.mirror1 -> Papi, mirror_mirror_on_the_wall.mirror2 -> Papi |
|
2018-08-11 03:02:14,103 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - Unspecified type (Unspecified version) workflow ec4559df-aab4-4384-b86f-03a82e94823d submitted |
|
2018-08-11 03:02:14,420 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowExecutionActor-26d179c7-8d97-4707-8a5b-ae99587aad82 [UUID(26d179c7)]: Starting cacheWithinWF.one |
|
2018-08-11 03:02:14,435 cromwell-system-akka.dispatchers.api-dispatcher-61 INFO - Unspecified type (Unspecified version) workflow 8efa7bd2-6c41-40fc-bdf8-d8a1929c99c0 submitted |
|
2018-08-11 03:02:14,809 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - 2 new workflows fetched |
|
2018-08-11 03:02:14,809 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Starting workflow UUID(ec4559df-aab4-4384-b86f-03a82e94823d) |
|
2018-08-11 03:02:14,809 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Successfully started WorkflowActor-ec4559df-aab4-4384-b86f-03a82e94823d |
|
2018-08-11 03:02:14,812 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Starting workflow UUID(8efa7bd2-6c41-40fc-bdf8-d8a1929c99c0) |
|
2018-08-11 03:02:14,815 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Successfully started WorkflowActor-8efa7bd2-6c41-40fc-bdf8-d8a1929c99c0 |
|
2018-08-11 03:02:14,820 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - Retrieved 2 workflows from the WorkflowStoreActor |
|
2018-08-11 03:02:14,820 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(8efa7bd2)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:02:14,838 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - MaterializeWorkflowDescriptorActor [UUID(ec4559df)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:02:14,850 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - MaterializeWorkflowDescriptorActor [UUID(ec4559df)]: Call-to-Backend assignments: docker_hash_gcr.gcr -> Papi |
|
2018-08-11 03:02:14,872 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(8efa7bd2)]: Call-to-Backend assignments: badExample.bad -> Papi |
|
2018-08-11 03:02:14,876 cromwell-system-akka.dispatchers.api-dispatcher-61 INFO - CWL (v1.0) workflow 5c60a694-7d57-4f86-ba3a-c22de94c935a submitted |
|
2018-08-11 03:02:15,364 cromwell-system-akka.dispatchers.api-dispatcher-61 INFO - Unspecified type (Unspecified version) workflow 88801cb6-a7aa-44a3-94ac-55a8c5dc39aa submitted |
|
2018-08-11 03:02:15,542 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowExecutionActor-45af4273-a746-45ac-9f31-1fd0c6421ea5 [UUID(45af4273)]: Starting ifs_in_scatters.validate_int (5 shards) |
|
2018-08-11 03:02:15,632 cromwell-system-akka.dispatchers.api-dispatcher-61 INFO - Unspecified type (Unspecified version) workflow 8610dbc7-7492-4141-ab1a-ce7cb9c4b73f submitted |
|
2018-08-11 03:02:15,831 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - 3 new workflows fetched |
|
2018-08-11 03:02:15,831 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowManagerActor Starting workflow UUID(5c60a694-7d57-4f86-ba3a-c22de94c935a) |
|
2018-08-11 03:02:15,831 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowManagerActor Successfully started WorkflowActor-5c60a694-7d57-4f86-ba3a-c22de94c935a |
|
2018-08-11 03:02:15,832 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowManagerActor Starting workflow UUID(88801cb6-a7aa-44a3-94ac-55a8c5dc39aa) |
|
2018-08-11 03:02:15,832 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowManagerActor Successfully started WorkflowActor-88801cb6-a7aa-44a3-94ac-55a8c5dc39aa |
|
2018-08-11 03:02:15,832 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowManagerActor Starting workflow UUID(8610dbc7-7492-4141-ab1a-ce7cb9c4b73f) |
|
2018-08-11 03:02:15,832 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowManagerActor Successfully started WorkflowActor-8610dbc7-7492-4141-ab1a-ce7cb9c4b73f |
|
2018-08-11 03:02:15,832 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - Retrieved 3 workflows from the WorkflowStoreActor |
|
2018-08-11 03:02:15,835 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - MaterializeWorkflowDescriptorActor [UUID(8610dbc7)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:02:15,838 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - MaterializeWorkflowDescriptorActor [UUID(5c60a694)]: Parsing workflow as CWL v1.0 |
|
2018-08-11 03:02:15,847 INFO - Pre-Processing /tmp/5c60a694-7d57-4f86-ba3a-c22de94c935a.temp.7801505479184996304/5c60a694-7d57-4f86-ba3a-c22de94c935a.cwl |
|
2018-08-11 03:02:15,873 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - MaterializeWorkflowDescriptorActor [UUID(88801cb6)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:02:16,123 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - MaterializeWorkflowDescriptorActor [UUID(8610dbc7)]: Call-to-Backend assignments: wf_hello.hello -> Papi |
|
2018-08-11 03:02:16,201 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - MaterializeWorkflowDescriptorActor [UUID(88801cb6)]: Call-to-Backend assignments: test.echo_str_2 -> Papi, test.echo_str -> Papi |
|
2018-08-11 03:02:16,207 cromwell-system-akka.dispatchers.api-dispatcher-61 INFO - Unspecified type (Unspecified version) workflow 4e18e509-c682-4276-9543-e1ea9f7a58dc submitted |
|
2018-08-11 03:02:16,583 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - Unspecified type (Unspecified version) workflow 88a6fda1-fa5d-456b-8ebd-057a921d230e submitted |
|
2018-08-11 03:02:16,731 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(80b836dc)]: Call-to-Backend assignments: 80b836dc-2a63-49dd-86ee-b065c6e08cf0.cwl -> Papi |
|
2018-08-11 03:02:16,852 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - 2 new workflows fetched |
|
2018-08-11 03:02:16,852 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowManagerActor Starting workflow UUID(4e18e509-c682-4276-9543-e1ea9f7a58dc) |
|
2018-08-11 03:02:16,853 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowManagerActor Successfully started WorkflowActor-4e18e509-c682-4276-9543-e1ea9f7a58dc |
|
2018-08-11 03:02:16,853 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowManagerActor Starting workflow UUID(88a6fda1-fa5d-456b-8ebd-057a921d230e) |
|
2018-08-11 03:02:16,853 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowManagerActor Successfully started WorkflowActor-88a6fda1-fa5d-456b-8ebd-057a921d230e |
|
2018-08-11 03:02:16,853 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - Retrieved 2 workflows from the WorkflowStoreActor |
|
2018-08-11 03:02:16,860 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(88a6fda1)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:02:16,880 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(4e18e509)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:02:16,962 cromwell-system-akka.dispatchers.api-dispatcher-61 INFO - Unspecified type (Unspecified version) workflow 6508de0e-3a2a-41fa-9b02-b92212090765 submitted |
|
2018-08-11 03:02:16,975 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(4e18e509)]: Call-to-Backend assignments: scoping_wf.scoping_task -> Papi |
|
2018-08-11 03:02:17,167 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(88a6fda1)]: Call-to-Backend assignments: read_write_json.make_some_json -> Papi, read_write_json.success -> Papi, read_write_json.round_trip -> Papi |
|
2018-08-11 03:02:17,317 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - WDL (1.0) workflow 8985f7c2-eee4-486d-9c02-f367b943e683 submitted |
|
2018-08-11 03:02:17,630 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - Unspecified type (Unspecified version) workflow f8901107-48c1-427d-a503-d1b399a14673 submitted |
|
2018-08-11 03:02:17,872 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - 3 new workflows fetched |
|
2018-08-11 03:02:17,873 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowManagerActor Starting workflow UUID(6508de0e-3a2a-41fa-9b02-b92212090765) |
|
2018-08-11 03:02:17,873 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowManagerActor Successfully started WorkflowActor-6508de0e-3a2a-41fa-9b02-b92212090765 |
|
2018-08-11 03:02:17,873 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowManagerActor Starting workflow UUID(8985f7c2-eee4-486d-9c02-f367b943e683) |
|
2018-08-11 03:02:17,873 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowManagerActor Successfully started WorkflowActor-8985f7c2-eee4-486d-9c02-f367b943e683 |
|
2018-08-11 03:02:17,873 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowManagerActor Starting workflow UUID(f8901107-48c1-427d-a503-d1b399a14673) |
|
2018-08-11 03:02:17,873 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowManagerActor Successfully started WorkflowActor-f8901107-48c1-427d-a503-d1b399a14673 |
|
2018-08-11 03:02:17,873 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - Retrieved 3 workflows from the WorkflowStoreActor |
|
2018-08-11 03:02:17,881 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - MaterializeWorkflowDescriptorActor [UUID(f8901107)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:02:17,885 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - MaterializeWorkflowDescriptorActor [UUID(6508de0e)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:02:17,885 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(8985f7c2)]: Parsing workflow as WDL 1.0 |
|
2018-08-11 03:02:18,089 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - Unspecified type (Unspecified version) workflow 23085617-abc7-4261-bb3f-66220da5f115 submitted |
|
2018-08-11 03:02:18,173 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - MaterializeWorkflowDescriptorActor [UUID(6508de0e)]: Call-to-Backend assignments: gpu_on_papi.task_with_tesla_p100 -> Papi, gpu_on_papi.task_with_tesla_k80 -> Papi |
|
2018-08-11 03:02:18,217 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(8985f7c2)]: Call-to-Backend assignments: |
|
2018-08-11 03:02:18,400 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - MaterializeWorkflowDescriptorActor [UUID(f8901107)]: Call-to-Backend assignments: nested_lookups.m2 -> Papi, nested_lookups.needs_wf_input -> Papi, nested_lookups.m1 -> Papi, nested_lookups.throwaway2 -> Papi, nested_lookups.throwaway1 -> Papi |
|
2018-08-11 03:02:18,577 cromwell-system-akka.dispatchers.api-dispatcher-61 INFO - Unspecified type (Unspecified version) workflow 1073fc07-2e07-49c7-8053-7a35a0dd0ec9 submitted |
|
2018-08-11 03:02:18,887 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - 2 new workflows fetched |
|
2018-08-11 03:02:18,887 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowManagerActor Starting workflow UUID(23085617-abc7-4261-bb3f-66220da5f115) |
|
2018-08-11 03:02:18,887 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowManagerActor Successfully started WorkflowActor-23085617-abc7-4261-bb3f-66220da5f115 |
|
2018-08-11 03:02:18,887 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowManagerActor Starting workflow UUID(1073fc07-2e07-49c7-8053-7a35a0dd0ec9) |
|
2018-08-11 03:02:18,887 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowManagerActor Successfully started WorkflowActor-1073fc07-2e07-49c7-8053-7a35a0dd0ec9 |
|
2018-08-11 03:02:18,887 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - Retrieved 2 workflows from the WorkflowStoreActor |
|
2018-08-11 03:02:18,892 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - MaterializeWorkflowDescriptorActor [UUID(1073fc07)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:02:18,895 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(23085617)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:02:19,010 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - MaterializeWorkflowDescriptorActor [UUID(1073fc07)]: Call-to-Backend assignments: scattergather.prepare -> Papi, scattergather.analysis -> Papi, scattergather.gather -> Papi |
|
2018-08-11 03:02:19,021 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(23085617)]: Call-to-Backend assignments: simple_if.runMeTrue -> Papi, simple_if.runMeFalse -> Papi |
|
2018-08-11 03:02:19,196 cromwell-system-akka.dispatchers.api-dispatcher-61 INFO - Unspecified type (Unspecified version) workflow df597859-2612-4fb7-acc2-40bfef9dfe69 submitted |
|
2018-08-11 03:02:19,662 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - Unspecified type (Unspecified version) workflow 86bc228d-cda7-4609-b7fb-c4c4dae25137 submitted |
|
2018-08-11 03:02:19,917 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - 2 new workflows fetched |
|
2018-08-11 03:02:19,917 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(df597859-2612-4fb7-acc2-40bfef9dfe69) |
|
2018-08-11 03:02:19,917 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-df597859-2612-4fb7-acc2-40bfef9dfe69 |
|
2018-08-11 03:02:19,918 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(86bc228d-cda7-4609-b7fb-c4c4dae25137) |
|
2018-08-11 03:02:19,918 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-86bc228d-cda7-4609-b7fb-c4c4dae25137 |
|
2018-08-11 03:02:19,918 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - Retrieved 2 workflows from the WorkflowStoreActor |
|
2018-08-11 03:02:19,920 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - MaterializeWorkflowDescriptorActor [UUID(86bc228d)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:02:19,939 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(df597859)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:02:19,949 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - WDL (1.0) workflow df304bdb-3f07-487a-bb05-6214943d9d79 submitted |
|
2018-08-11 03:02:20,054 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(df597859)]: Call-to-Backend assignments: size_wf.size_task -> Papi |
|
2018-08-11 03:02:20,147 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - MaterializeWorkflowDescriptorActor [UUID(86bc228d)]: Call-to-Backend assignments: declarations_in_ifs.double_j -> Papi, declarations_in_ifs.double_i -> Papi |
|
2018-08-11 03:02:20,403 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - WDL (1.0) workflow 3605344c-9aa4-49b2-93fe-0c234ec969c0 submitted |
|
2018-08-11 03:02:20,693 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - Unspecified type (Unspecified version) workflow da0a3242-9e47-4ffc-9b50-da4fe1997414 submitted |
|
2018-08-11 03:02:20,877 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - MaterializeWorkflowDescriptorActor [UUID(5c60a694)]: Call-to-Backend assignments: machineTypeTool -> Papi |
|
2018-08-11 03:02:20,927 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - CWL (v1.0) workflow 6bd00416-4477-42d8-8ad9-6f8104a6b9b0 submitted |
|
2018-08-11 03:02:20,943 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - 4 new workflows fetched |
|
2018-08-11 03:02:20,943 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Starting workflow UUID(df304bdb-3f07-487a-bb05-6214943d9d79) |
|
2018-08-11 03:02:20,943 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Successfully started WorkflowActor-df304bdb-3f07-487a-bb05-6214943d9d79 |
|
2018-08-11 03:02:20,943 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Starting workflow UUID(3605344c-9aa4-49b2-93fe-0c234ec969c0) |
|
2018-08-11 03:02:20,943 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Successfully started WorkflowActor-3605344c-9aa4-49b2-93fe-0c234ec969c0 |
|
2018-08-11 03:02:20,943 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Starting workflow UUID(da0a3242-9e47-4ffc-9b50-da4fe1997414) |
|
2018-08-11 03:02:20,944 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Successfully started WorkflowActor-da0a3242-9e47-4ffc-9b50-da4fe1997414 |
|
2018-08-11 03:02:20,944 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Starting workflow UUID(6bd00416-4477-42d8-8ad9-6f8104a6b9b0) |
|
2018-08-11 03:02:20,944 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Successfully started WorkflowActor-6bd00416-4477-42d8-8ad9-6f8104a6b9b0 |
|
2018-08-11 03:02:20,945 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - Retrieved 4 workflows from the WorkflowStoreActor |
|
2018-08-11 03:02:20,947 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(6bd00416)]: Parsing workflow as CWL v1.0 |
|
2018-08-11 03:02:20,951 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - MaterializeWorkflowDescriptorActor [UUID(df304bdb)]: Parsing workflow as WDL 1.0 |
|
2018-08-11 03:02:20,952 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(3605344c)]: Parsing workflow as WDL 1.0 |
|
2018-08-11 03:02:20,957 INFO - Pre-Processing /tmp/6bd00416-4477-42d8-8ad9-6f8104a6b9b0.temp.7201781026225546149/6bd00416-4477-42d8-8ad9-6f8104a6b9b0.cwl |
|
2018-08-11 03:02:20,968 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - MaterializeWorkflowDescriptorActor [UUID(da0a3242)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:02:21,029 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - MaterializeWorkflowDescriptorActor [UUID(df304bdb)]: Call-to-Backend assignments: |
|
2018-08-11 03:02:21,072 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(3605344c)]: Call-to-Backend assignments: requester_pays_localization.localize -> Papi |
|
2018-08-11 03:02:21,170 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - MaterializeWorkflowDescriptorActor [UUID(da0a3242)]: Call-to-Backend assignments: globbingindex.glob_task -> Papi |
|
2018-08-11 03:02:21,302 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowExecutionActor-8985f7c2-eee4-486d-9c02-f367b943e683 [UUID(8985f7c2)]: Workflow array_indexing complete. Final Outputs: |
|
{ |
|
"array_indexing.string_map_deref": 101, |
|
"array_indexing.struct_deref": 55, |
|
"array_indexing.int_map_deref": "int_value", |
|
"array_indexing.array_deref": 25 |
|
} |
|
2018-08-11 03:02:21,309 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor WorkflowActor-8985f7c2-eee4-486d-9c02-f367b943e683 is in a terminal state: WorkflowSucceededState |
|
2018-08-11 03:02:21,560 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - Unspecified type (Unspecified version) workflow 9a862b7e-13d0-4b63-a747-4c17104b4918 submitted |
|
[33m- should successfully run refresh_token_sub_workflow !!! IGNORED !!![0m |
|
2018-08-11 03:02:21,850 cromwell-system-akka.dispatchers.api-dispatcher-61 INFO - CWL (v1.0) workflow 888d0319-3bb4-422c-b4ec-ad5c23729330 submitted |
|
2018-08-11 03:02:21,963 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - 2 new workflows fetched |
|
2018-08-11 03:02:21,963 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - WorkflowManagerActor Starting workflow UUID(9a862b7e-13d0-4b63-a747-4c17104b4918) |
|
2018-08-11 03:02:21,963 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - WorkflowManagerActor Successfully started WorkflowActor-9a862b7e-13d0-4b63-a747-4c17104b4918 |
|
2018-08-11 03:02:21,964 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - WorkflowManagerActor Starting workflow UUID(888d0319-3bb4-422c-b4ec-ad5c23729330) |
|
2018-08-11 03:02:21,964 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - WorkflowManagerActor Successfully started WorkflowActor-888d0319-3bb4-422c-b4ec-ad5c23729330 |
|
2018-08-11 03:02:21,964 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - Retrieved 2 workflows from the WorkflowStoreActor |
|
2018-08-11 03:02:21,980 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - MaterializeWorkflowDescriptorActor [UUID(888d0319)]: Parsing workflow as CWL v1.0 |
|
2018-08-11 03:02:21,985 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - MaterializeWorkflowDescriptorActor [UUID(9a862b7e)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:02:22,036 INFO - Pre-Processing /tmp/888d0319-3bb4-422c-b4ec-ad5c23729330.temp.2973283434048042376/888d0319-3bb4-422c-b4ec-ad5c23729330.cwl |
|
2018-08-11 03:02:22,175 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - MaterializeWorkflowDescriptorActor [UUID(9a862b7e)]: Call-to-Backend assignments: declarations_as_nodes.t1 -> Papi, declarations_as_nodes.t4 -> Papi, declarations_as_nodes.t3 -> Papi, declarations_as_nodes.t2 -> Papi |
|
2018-08-11 03:02:22,304 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - Unspecified type (Unspecified version) workflow 106ab6ed-a8de-45e3-aaf2-f8136ed1c50e submitted |
|
2018-08-11 03:02:22,764 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - WDL (1.0) workflow b60dbf01-8ac7-4207-b0b5-58b664b6768b submitted |
|
2018-08-11 03:02:22,979 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - 2 new workflows fetched |
|
2018-08-11 03:02:22,979 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Starting workflow UUID(106ab6ed-a8de-45e3-aaf2-f8136ed1c50e) |
|
2018-08-11 03:02:22,979 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Successfully started WorkflowActor-106ab6ed-a8de-45e3-aaf2-f8136ed1c50e |
|
2018-08-11 03:02:22,979 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Starting workflow UUID(b60dbf01-8ac7-4207-b0b5-58b664b6768b) |
|
2018-08-11 03:02:22,979 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Successfully started WorkflowActor-b60dbf01-8ac7-4207-b0b5-58b664b6768b |
|
2018-08-11 03:02:22,979 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - Retrieved 2 workflows from the WorkflowStoreActor |
|
2018-08-11 03:02:22,988 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - MaterializeWorkflowDescriptorActor [UUID(106ab6ed)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:02:23,002 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - MaterializeWorkflowDescriptorActor [UUID(b60dbf01)]: Parsing workflow as WDL 1.0 |
|
2018-08-11 03:02:23,023 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - MaterializeWorkflowDescriptorActor [UUID(106ab6ed)]: Call-to-Backend assignments: invalid_runtime_attributes_wf.invalid_runtime_attributes -> Papi |
|
2018-08-11 03:02:23,086 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowExecutionActor-df304bdb-3f07-487a-bb05-6214943d9d79 [UUID(df304bdb)]: Workflow struct_output complete. Final Outputs: |
|
{ |
|
"struct_output.myFoo": { |
|
"simple": 5, |
|
"complex": { |
|
"left": [5], |
|
"right": { |
|
"t": true |
|
} |
|
} |
|
} |
|
} |
|
2018-08-11 03:02:23,112 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor WorkflowActor-df304bdb-3f07-487a-bb05-6214943d9d79 is in a terminal state: WorkflowSucceededState |
|
[33m- should fail during execution refresh_token_no_auth_bucket !!! IGNORED !!![0m |
|
2018-08-11 03:02:23,335 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - WDL (1.0) workflow 0bae37d3-2ac8-4d79-b78f-ce91108498d6 submitted |
|
2018-08-11 03:02:23,589 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - MaterializeWorkflowDescriptorActor [UUID(b60dbf01)]: Call-to-Backend assignments: draft3_nio_file.non_cc_nio_file -> Papi, draft3_nio_file.mk_files -> Papi, draft3_nio_file.nio_file -> Papi, draft3_nio_file.cc_nio_file -> Papi, draft3_nio_file.mk_more_files -> Papi |
|
2018-08-11 03:02:23,995 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - 1 new workflows fetched |
|
2018-08-11 03:02:23,995 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - WorkflowManagerActor Starting workflow UUID(0bae37d3-2ac8-4d79-b78f-ce91108498d6) |
|
2018-08-11 03:02:23,995 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - WorkflowManagerActor Successfully started WorkflowActor-0bae37d3-2ac8-4d79-b78f-ce91108498d6 |
|
2018-08-11 03:02:23,995 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - Retrieved 1 workflows from the WorkflowStoreActor |
|
2018-08-11 03:02:24,018 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(0bae37d3)]: Parsing workflow as WDL 1.0 |
|
2018-08-11 03:02:24,438 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(0bae37d3)]: Call-to-Backend assignments: draft3_optional_addition.call_me -> Papi |
|
2018-08-11 03:02:24,573 cromwell-system-akka.dispatchers.api-dispatcher-61 INFO - Unspecified type (Unspecified version) workflow f5fda0a4-41e1-4831-8b31-d217e968a68c submitted |
|
2018-08-11 03:02:24,997 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - WDL (1.0) workflow 78e47c58-72a5-4b86-94ac-c9cb17b39ae3 submitted |
|
2018-08-11 03:02:25,017 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - 2 new workflows fetched |
|
2018-08-11 03:02:25,018 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - WorkflowManagerActor Starting workflow UUID(f5fda0a4-41e1-4831-8b31-d217e968a68c) |
|
2018-08-11 03:02:25,018 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - WorkflowManagerActor Successfully started WorkflowActor-f5fda0a4-41e1-4831-8b31-d217e968a68c |
|
2018-08-11 03:02:25,018 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - WorkflowManagerActor Starting workflow UUID(78e47c58-72a5-4b86-94ac-c9cb17b39ae3) |
|
2018-08-11 03:02:25,018 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - WorkflowManagerActor Successfully started WorkflowActor-78e47c58-72a5-4b86-94ac-c9cb17b39ae3 |
|
2018-08-11 03:02:25,018 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - Retrieved 2 workflows from the WorkflowStoreActor |
|
2018-08-11 03:02:25,024 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - MaterializeWorkflowDescriptorActor [UUID(f5fda0a4)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:02:25,027 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - MaterializeWorkflowDescriptorActor [UUID(78e47c58)]: Parsing workflow as WDL 1.0 |
|
2018-08-11 03:02:25,098 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - MaterializeWorkflowDescriptorActor [UUID(f5fda0a4)]: Call-to-Backend assignments: missing_input_failure.hello -> Papi |
|
2018-08-11 03:02:25,152 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - MaterializeWorkflowDescriptorActor [UUID(78e47c58)]: Call-to-Backend assignments: draft3_omitting_outputs.foo -> Papi, foo_in_a_box.foo -> Papi |
|
2018-08-11 03:02:25,228 cromwell-system-akka.dispatchers.backend-dispatcher-42 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(c09bd460)filearrayoutput.createFileArray:NA:1]: `mkdir out |
|
echo "hullo" > out/hello.txt |
|
echo "buh-bye" > out/ciao.txt` |
|
2018-08-11 03:02:25,512 cromwell-system-akka.dispatchers.backend-dispatcher-44 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(45af4273)ifs_in_scatters.validate_int:4:1]: `echo $(( 4 % 2 ))` |
|
2018-08-11 03:02:25,518 cromwell-system-akka.dispatchers.backend-dispatcher-63 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(45af4273)ifs_in_scatters.init:NA:1]: `echo 1` |
|
2018-08-11 03:02:25,589 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - Unspecified type (Unspecified version) workflow 78f81e80-c730-4d1a-9d08-9442d3181a21 submitted |
|
2018-08-11 03:02:25,658 cromwell-system-akka.dispatchers.backend-dispatcher-63 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(45af4273)ifs_in_scatters.validate_int:1:1]: `echo $(( 1 % 2 ))` |
|
2018-08-11 03:02:25,742 cromwell-system-akka.dispatchers.backend-dispatcher-41 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(45af4273)ifs_in_scatters.validate_int:0:1]: `echo $(( 0 % 2 ))` |
|
2018-08-11 03:02:26,041 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - 1 new workflows fetched |
|
2018-08-11 03:02:26,042 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(78f81e80-c730-4d1a-9d08-9442d3181a21) |
|
2018-08-11 03:02:26,042 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-78f81e80-c730-4d1a-9d08-9442d3181a21 |
|
2018-08-11 03:02:26,042 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - Retrieved 1 workflows from the WorkflowStoreActor |
|
2018-08-11 03:02:26,057 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(78f81e80)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:02:26,178 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(78f81e80)]: Call-to-Backend assignments: |
|
2018-08-11 03:02:26,183 cromwell-system-akka.dispatchers.api-dispatcher-61 INFO - Unspecified type (Unspecified version) workflow cfb9aa54-ed98-4960-b457-3b6411e60a67 submitted |
|
2018-08-11 03:02:26,255 cromwell-system-akka.dispatchers.backend-dispatcher-63 WARN - Papi [UUID(5c60a694)]: Key/s [memoryMax, cpuMax] is/are not supported by backend. Unsupported attributes will not be part of job executions. |
|
2018-08-11 03:02:26,304 cromwell-system-akka.dispatchers.backend-dispatcher-63 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(45af4273)ifs_in_scatters.validate_int:3:1]: `echo $(( 3 % 2 ))` |
|
[33m- should call cache the second run of backendWithNoDocker !!! IGNORED !!![0m |
|
2018-08-11 03:02:26,614 cromwell-system-akka.dispatchers.api-dispatcher-61 INFO - Unspecified type (Unspecified version) workflow 989e9d1f-384e-4b14-9ffa-511c6f4f461b submitted |
|
2018-08-11 03:02:26,896 cromwell-system-akka.dispatchers.engine-dispatcher-32 ERROR - WorkflowManagerActor Workflow dbaaf524-3e51-42a4-a4a3-acabad947aae failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out |
|
at java.net.PlainSocketImpl.socketConnect(Native Method) |
|
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350) |
|
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206) |
|
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188) |
|
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392) |
|
at java.net.Socket.connect(Socket.java:589) |
|
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673) |
|
at sun.net.NetworkClient.doConnect(NetworkClient.java:175) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558) |
|
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264) |
|
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291) |
|
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250) |
|
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981) |
|
at com.google.api.client.auth.oauth2.TokenRequest.executeUnparsed(TokenRequest.java:283) |
|
at com.google.api.client.auth.oauth2.TokenRequest.execute(TokenRequest.java:307) |
|
at com.google.api.client.googleapis.auth.oauth2.GoogleCredential.executeRefreshToken(GoogleCredential.java:394) |
|
at com.google.api.client.auth.oauth2.Credential.refreshToken(Credential.java:489) |
|
at com.google.api.client.auth.oauth2.Credential.intercept(Credential.java:217) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:868) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469) |
|
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101) |
|
at scala.Option.map(Option.scala:146) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121) |
|
at scala.util.Success.$anonfun$map$1(Try.scala:251) |
|
at scala.util.Success.map(Try.scala:209) |
|
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288) |
|
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29) |
|
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
|
|
2018-08-11 03:02:26,911 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - WorkflowManagerActor WorkflowActor-dbaaf524-3e51-42a4-a4a3-acabad947aae is in a terminal state: WorkflowFailedState |
|
2018-08-11 03:02:26,933 cromwell-system-akka.dispatchers.backend-dispatcher-63 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(45af4273)ifs_in_scatters.validate_int:2:1]: `echo $(( 2 % 2 ))` |
|
2018-08-11 03:02:27,163 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - 2 new workflows fetched |
|
2018-08-11 03:02:27,163 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(cfb9aa54-ed98-4960-b457-3b6411e60a67) |
|
2018-08-11 03:02:27,164 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-cfb9aa54-ed98-4960-b457-3b6411e60a67 |
|
2018-08-11 03:02:27,164 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(989e9d1f-384e-4b14-9ffa-511c6f4f461b) |
|
2018-08-11 03:02:27,164 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-989e9d1f-384e-4b14-9ffa-511c6f4f461b |
|
2018-08-11 03:02:27,164 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - Retrieved 2 workflows from the WorkflowStoreActor |
|
2018-08-11 03:02:27,173 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(989e9d1f)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:02:27,176 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - MaterializeWorkflowDescriptorActor [UUID(cfb9aa54)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:02:27,608 cromwell-system-akka.dispatchers.engine-dispatcher-31 ERROR - WorkflowManagerActor Workflow 62091ef4-05a2-4b3d-83d6-c084fd798833 failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out |
|
at java.net.PlainSocketImpl.socketConnect(Native Method) |
|
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350) |
|
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206) |
|
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188) |
|
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392) |
|
at java.net.Socket.connect(Socket.java:589) |
|
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673) |
|
at sun.net.NetworkClient.doConnect(NetworkClient.java:175) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558) |
|
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264) |
|
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291) |
|
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250) |
|
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981) |
|
at com.google.api.client.auth.oauth2.TokenRequest.executeUnparsed(TokenRequest.java:283) |
|
at com.google.api.client.auth.oauth2.TokenRequest.execute(TokenRequest.java:307) |
|
at com.google.api.client.googleapis.auth.oauth2.GoogleCredential.executeRefreshToken(GoogleCredential.java:394) |
|
at com.google.api.client.auth.oauth2.Credential.refreshToken(Credential.java:489) |
|
at com.google.api.client.auth.oauth2.Credential.intercept(Credential.java:217) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:868) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469) |
|
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101) |
|
at scala.Option.map(Option.scala:146) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121) |
|
at scala.util.Success.$anonfun$map$1(Try.scala:251) |
|
at scala.util.Success.map(Try.scala:209) |
|
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288) |
|
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29) |
|
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
|
|
2018-08-11 03:02:27,635 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor WorkflowActor-62091ef4-05a2-4b3d-83d6-c084fd798833 is in a terminal state: WorkflowFailedState |
|
2018-08-11 03:02:27,650 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(989e9d1f)]: Call-to-Backend assignments: read_file_limits.readFloat -> Papi, read_file_limits.readInt -> Papi, read_file_limits.readObjects -> Papi, read_file_limits.readObject -> Papi, read_file_limits.readLines -> Papi, read_file_limits.readBoolean -> Papi, read_file_limits.readTsv -> Papi, read_file_limits.readString -> Papi, read_file_limits.readJson -> Papi, read_file_limits.readMap -> Papi |
|
2018-08-11 03:02:27,749 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - MaterializeWorkflowDescriptorActor [UUID(cfb9aa54)]: Call-to-Backend assignments: subhello.hello -> Papi, subhello.hello -> Papi, subhello.hello -> Papi |
|
2018-08-11 03:02:27,837 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(6bd00416)]: Call-to-Backend assignments: hello -> Papi |
|
2018-08-11 03:02:28,422 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - WorkflowExecutionActor-4fe7437b-4df5-479d-9ae5-ecf3a0261322 [UUID(4fe7437b)]: Condition met: 'length(row) == 2'. Running conditional section |
|
2018-08-11 03:02:28,439 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - WorkflowExecutionActor-4fe7437b-4df5-479d-9ae5-ecf3a0261322 [UUID(4fe7437b)]: Condition met: 'length(row) == 2'. Running conditional section |
|
2018-08-11 03:02:29,029 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - WDL (1.0) workflow 2081df5a-e04e-44d1-927d-922925d318c2 submitted |
|
2018-08-11 03:02:29,196 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - 1 new workflows fetched |
|
2018-08-11 03:02:29,197 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor Starting workflow UUID(2081df5a-e04e-44d1-927d-922925d318c2) |
|
2018-08-11 03:02:29,197 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor Successfully started WorkflowActor-2081df5a-e04e-44d1-927d-922925d318c2 |
|
2018-08-11 03:02:29,197 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - Retrieved 1 workflows from the WorkflowStoreActor |
|
2018-08-11 03:02:29,200 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(2081df5a)]: Parsing workflow as WDL 1.0 |
|
2018-08-11 03:02:29,280 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(2081df5a)]: Call-to-Backend assignments: requester_pays_engine_functions.functions -> Papiv2RequesterPays |
|
2018-08-11 03:02:29,438 cromwell-system-akka.dispatchers.api-dispatcher-66 INFO - WDL (1.0) workflow 5e287608-d4be-4014-b70e-625ea2002073 submitted |
|
2018-08-11 03:02:29,648 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowExecutionActor-23085617-abc7-4261-bb3f-66220da5f115 [UUID(23085617)]: Condition met: 'true'. Running conditional section |
|
2018-08-11 03:02:29,648 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowExecutionActor-23085617-abc7-4261-bb3f-66220da5f115 [UUID(23085617)]: Condition NOT met: 'false'. Bypassing conditional section |
|
2018-08-11 03:02:29,751 cromwell-system-akka.dispatchers.api-dispatcher-66 INFO - Unspecified type (Unspecified version) workflow 268b462a-3fec-4474-9073-5b81e5c97cf5 submitted |
|
2018-08-11 03:02:30,069 cromwell-system-akka.dispatchers.api-dispatcher-66 INFO - Unspecified type (Unspecified version) workflow 8afdcac0-73fb-40c8-b234-594ab8972f1f submitted |
|
2018-08-11 03:02:30,224 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - 3 new workflows fetched |
|
2018-08-11 03:02:30,225 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor Starting workflow UUID(5e287608-d4be-4014-b70e-625ea2002073) |
|
2018-08-11 03:02:30,225 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor Successfully started WorkflowActor-5e287608-d4be-4014-b70e-625ea2002073 |
|
2018-08-11 03:02:30,225 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor Starting workflow UUID(268b462a-3fec-4474-9073-5b81e5c97cf5) |
|
2018-08-11 03:02:30,226 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor Successfully started WorkflowActor-268b462a-3fec-4474-9073-5b81e5c97cf5 |
|
2018-08-11 03:02:30,227 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor Starting workflow UUID(8afdcac0-73fb-40c8-b234-594ab8972f1f) |
|
2018-08-11 03:02:30,228 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor Successfully started WorkflowActor-8afdcac0-73fb-40c8-b234-594ab8972f1f |
|
2018-08-11 03:02:30,228 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - Retrieved 3 workflows from the WorkflowStoreActor |
|
2018-08-11 03:02:30,230 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(8afdcac0)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:02:30,241 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(5e287608)]: Parsing workflow as WDL 1.0 |
|
2018-08-11 03:02:30,267 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - MaterializeWorkflowDescriptorActor [UUID(268b462a)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:02:30,377 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(8afdcac0)]: Call-to-Backend assignments: local_gcs.readGcsFileFromLocal -> Local, local_gcs.makeGcsFileInJes -> Papi |
|
2018-08-11 03:02:30,422 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(5e287608)]: Call-to-Backend assignments: forkjoin.mkFile -> Papi, forkjoin.join -> Papi, forkjoin.wc -> Papi, forkjoin.grep -> Papi |
|
2018-08-11 03:02:30,422 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - MaterializeWorkflowDescriptorActor [UUID(268b462a)]: Call-to-Backend assignments: wf_hello.hello -> Papi |
|
2018-08-11 03:02:30,467 cromwell-system-akka.dispatchers.api-dispatcher-66 INFO - Unspecified type (Unspecified version) workflow 29014d92-e9bf-4cf3-895e-7b6da6733b7f submitted |
|
2018-08-11 03:02:30,578 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - MaterializeWorkflowDescriptorActor [UUID(888d0319)]: Call-to-Backend assignments: cgrep -> Papi, ps -> Papi, wc -> Papi |
|
2018-08-11 03:02:30,664 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowExecutionActor-23085617-abc7-4261-bb3f-66220da5f115 [UUID(23085617)]: Starting simple_if.runMeTrue |
|
2018-08-11 03:02:30,726 cromwell-system-akka.dispatchers.api-dispatcher-66 INFO - Unspecified type (Unspecified version) workflow d017c0dd-f210-431f-907a-a2b7b899101b submitted |
|
2018-08-11 03:02:30,934 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - Unspecified type (Unspecified version) workflow 5040d120-3eb9-4c03-af9c-1b950c866c55 submitted |
|
[33m- should successfully run inter_scatter_dependencies !!! IGNORED !!![0m |
|
2018-08-11 03:02:31,098 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - CWL (v1.0) workflow 05f3189b-60be-4251-a662-4a7130e3db57 submitted |
|
2018-08-11 03:02:31,252 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - 4 new workflows fetched |
|
2018-08-11 03:02:31,252 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Starting workflow UUID(29014d92-e9bf-4cf3-895e-7b6da6733b7f) |
|
2018-08-11 03:02:31,256 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Successfully started WorkflowActor-29014d92-e9bf-4cf3-895e-7b6da6733b7f |
|
2018-08-11 03:02:31,256 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Starting workflow UUID(d017c0dd-f210-431f-907a-a2b7b899101b) |
|
2018-08-11 03:02:31,256 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Successfully started WorkflowActor-d017c0dd-f210-431f-907a-a2b7b899101b |
|
2018-08-11 03:02:31,256 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Starting workflow UUID(5040d120-3eb9-4c03-af9c-1b950c866c55) |
|
2018-08-11 03:02:31,256 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Successfully started WorkflowActor-5040d120-3eb9-4c03-af9c-1b950c866c55 |
|
2018-08-11 03:02:31,256 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Starting workflow UUID(05f3189b-60be-4251-a662-4a7130e3db57) |
|
2018-08-11 03:02:31,256 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Successfully started WorkflowActor-05f3189b-60be-4251-a662-4a7130e3db57 |
|
2018-08-11 03:02:31,256 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - Retrieved 4 workflows from the WorkflowStoreActor |
|
2018-08-11 03:02:31,260 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - MaterializeWorkflowDescriptorActor [UUID(5040d120)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:02:31,261 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - MaterializeWorkflowDescriptorActor [UUID(05f3189b)]: Parsing workflow as CWL v1.0 |
|
2018-08-11 03:02:31,271 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(29014d92)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:02:31,275 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(d017c0dd)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:02:31,283 INFO - Pre-Processing /tmp/05f3189b-60be-4251-a662-4a7130e3db57.temp.5990880680797181481/05f3189b-60be-4251-a662-4a7130e3db57.cwl |
|
2018-08-11 03:02:31,330 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(d017c0dd)]: Call-to-Backend assignments: wf_hello.hello -> Papi |
|
2018-08-11 03:02:31,390 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - MaterializeWorkflowDescriptorActor [UUID(5040d120)]: Call-to-Backend assignments: two_step.make_a_file -> Papi, two_step.cat -> Papi, two_step.cgrep -> Papi |
|
2018-08-11 03:02:31,429 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(29014d92)]: Call-to-Backend assignments: multplesourcedarray.source2 -> Papi, multplesourcedarray.source1 -> Papi, multplesourcedarray.source6 -> Papi, multplesourcedarray.source3 -> Papi, multplesourcedarray.source7 -> Papi, multplesourcedarray.source4 -> Papi, multplesourcedarray.consumeFiles -> Papi, multplesourcedarray.consume -> Papi, multplesourcedarray.source5 -> Papi |
|
2018-08-11 03:02:31,489 cromwell-system-akka.dispatchers.api-dispatcher-66 INFO - Unspecified type (Unspecified version) workflow 17529c55-58df-45ff-bd0b-b100d1d903b9 submitted |
|
2018-08-11 03:02:31,850 cromwell-system-akka.dispatchers.engine-dispatcher-33 ERROR - WorkflowManagerActor Workflow 9ba48877-5476-478c-8343-e7cfecccf1b7 failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out |
|
at java.net.PlainSocketImpl.socketConnect(Native Method) |
|
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350) |
|
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206) |
|
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188) |
|
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392) |
|
at java.net.Socket.connect(Socket.java:589) |
|
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673) |
|
at sun.net.NetworkClient.doConnect(NetworkClient.java:175) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558) |
|
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264) |
|
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291) |
|
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250) |
|
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469) |
|
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101) |
|
at scala.Option.map(Option.scala:146) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121) |
|
at scala.util.Success.$anonfun$map$1(Try.scala:251) |
|
at scala.util.Success.map(Try.scala:209) |
|
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288) |
|
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29) |
|
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
|
|
2018-08-11 03:02:31,851 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowManagerActor WorkflowActor-9ba48877-5476-478c-8343-e7cfecccf1b7 is in a terminal state: WorkflowFailedState |
|
2018-08-11 03:02:32,013 cromwell-system-akka.dispatchers.api-dispatcher-68 INFO - WDL (1.0) workflow 7269bc5a-c965-45e3-9c16-51fcb0e0d714 submitted |
|
2018-08-11 03:02:32,074 cromwell-system-akka.dispatchers.engine-dispatcher-6 ERROR - WorkflowManagerActor Workflow 1fc6af14-ab85-453d-b6dc-297f3cf9cf65 failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out |
|
at java.net.PlainSocketImpl.socketConnect(Native Method) |
|
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350) |
|
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206) |
|
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188) |
|
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392) |
|
at java.net.Socket.connect(Socket.java:589) |
|
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673) |
|
at sun.net.NetworkClient.doConnect(NetworkClient.java:175) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558) |
|
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264) |
|
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291) |
|
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250) |
|
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981) |
|
at com.google.api.client.auth.oauth2.TokenRequest.executeUnparsed(TokenRequest.java:283) |
|
at com.google.api.client.auth.oauth2.TokenRequest.execute(TokenRequest.java:307) |
|
at com.google.api.client.googleapis.auth.oauth2.GoogleCredential.executeRefreshToken(GoogleCredential.java:394) |
|
at com.google.api.client.auth.oauth2.Credential.refreshToken(Credential.java:489) |
|
at com.google.api.client.auth.oauth2.Credential.intercept(Credential.java:217) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:868) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469) |
|
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101) |
|
at scala.Option.map(Option.scala:146) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121) |
|
at scala.util.Success.$anonfun$map$1(Try.scala:251) |
|
at scala.util.Success.map(Try.scala:209) |
|
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288) |
|
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29) |
|
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
|
|
2018-08-11 03:02:32,074 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor WorkflowActor-1fc6af14-ab85-453d-b6dc-297f3cf9cf65 is in a terminal state: WorkflowFailedState |
|
2018-08-11 03:02:32,075 cromwell-system-akka.dispatchers.engine-dispatcher-6 ERROR - WorkflowManagerActor Workflow fdc9eff4-89c2-4454-8ac9-c29c0caa4598 failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out |
|
at java.net.PlainSocketImpl.socketConnect(Native Method) |
|
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350) |
|
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206) |
|
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188) |
|
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392) |
|
at java.net.Socket.connect(Socket.java:589) |
|
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673) |
|
at sun.net.NetworkClient.doConnect(NetworkClient.java:175) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558) |
|
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264) |
|
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291) |
|
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250) |
|
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981) |
|
at com.google.api.client.auth.oauth2.TokenRequest.executeUnparsed(TokenRequest.java:283) |
|
at com.google.api.client.auth.oauth2.TokenRequest.execute(TokenRequest.java:307) |
|
at com.google.api.client.googleapis.auth.oauth2.GoogleCredential.executeRefreshToken(GoogleCredential.java:394) |
|
at com.google.api.client.auth.oauth2.Credential.refreshToken(Credential.java:489) |
|
at com.google.api.client.auth.oauth2.Credential.intercept(Credential.java:217) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:868) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469) |
|
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101) |
|
at scala.Option.map(Option.scala:146) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121) |
|
at scala.util.Success.$anonfun$map$1(Try.scala:251) |
|
at scala.util.Success.map(Try.scala:209) |
|
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288) |
|
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29) |
|
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
|
|
2018-08-11 03:02:32,075 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor WorkflowActor-fdc9eff4-89c2-4454-8ac9-c29c0caa4598 is in a terminal state: WorkflowFailedState |
|
2018-08-11 03:02:32,103 cromwell-system-akka.dispatchers.backend-dispatcher-43 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(26d179c7)cacheWithinWF.one:NA:1]: `echo 3844` |
|
2018-08-11 03:02:32,277 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - 2 new workflows fetched |
|
2018-08-11 03:02:32,277 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - WorkflowManagerActor Starting workflow UUID(17529c55-58df-45ff-bd0b-b100d1d903b9) |
|
2018-08-11 03:02:32,277 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - WorkflowManagerActor Successfully started WorkflowActor-17529c55-58df-45ff-bd0b-b100d1d903b9 |
|
2018-08-11 03:02:32,277 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - WorkflowManagerActor Starting workflow UUID(7269bc5a-c965-45e3-9c16-51fcb0e0d714) |
|
2018-08-11 03:02:32,277 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - WorkflowManagerActor Successfully started WorkflowActor-7269bc5a-c965-45e3-9c16-51fcb0e0d714 |
|
2018-08-11 03:02:32,277 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - Retrieved 2 workflows from the WorkflowStoreActor |
|
2018-08-11 03:02:32,290 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - MaterializeWorkflowDescriptorActor [UUID(17529c55)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:02:32,300 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - MaterializeWorkflowDescriptorActor [UUID(7269bc5a)]: Parsing workflow as WDL 1.0 |
|
2018-08-11 03:02:32,335 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowExecutionActor-78f81e80-c730-4d1a-9d08-9442d3181a21 [UUID(78f81e80)]: Workflow square complete. Final Outputs: |
|
{ |
|
"square.doubled": [1, 4] |
|
} |
|
2018-08-11 03:02:32,358 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - MaterializeWorkflowDescriptorActor [UUID(17529c55)]: Call-to-Backend assignments: custom_mount_point.t -> Papi |
|
2018-08-11 03:02:32,373 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor WorkflowActor-78f81e80-c730-4d1a-9d08-9442d3181a21 is in a terminal state: WorkflowSucceededState |
|
2018-08-11 03:02:32,522 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - WorkflowExecutionActor-4fe7437b-4df5-479d-9ae5-ecf3a0261322 [UUID(4fe7437b)]: Starting arrays_scatters_ifs.printInt (2 shards) |
|
2018-08-11 03:02:32,837 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - WDL (1.0) workflow 8f3163de-44c1-42a5-8355-f942d2bb2138 submitted |
|
2018-08-11 03:02:33,081 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowExecutionActor-1073fc07-2e07-49c7-8053-7a35a0dd0ec9 [UUID(1073fc07)]: Starting scattergather.prepare |
|
2018-08-11 03:02:33,150 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - MaterializeWorkflowDescriptorActor [UUID(7269bc5a)]: Call-to-Backend assignments: draft3_call_cache_capoeira.read_files_failOnStderr_expression -> Papi, draft3_call_cache_capoeira.read_files_new_command -> Papi, draft3_call_cache_capoeira.read_copied_files -> Papi, draft3_call_cache_capoeira.make_files_cached -> Papi, draft3_call_cache_capoeira.read_files_without_failOnStderr -> Papi, draft3_call_cache_capoeira.read_files_different_failOnStderr -> Papi, draft3_call_cache_capoeira.read_files -> Papi, draft3_call_cache_capoeira.read_files_non_file_input_switcheroo -> Papi, draft3_call_cache_capoeira.read_files_after_modify -> Papi, draft3_call_cache_capoeira.read_files_inputs_renamed -> Papi, draft3_call_cache_capoeira.read_array_files_rearranged -> Papi, draft3_call_cache_capoeira.modify_file_gcs -> Papi, draft3_call_cache_capoeira.read_files_different_continueOnReturnCode_2 -> Papi, draft3_call_cache_capoeira.read_files_different_docker -> Papi, draft3_call_cache_capoeira.read_files_new_output_expressions -> Papi, draft3_call_cache_capoeira.read_files_without_continueOnReturnCode -> Papi, draft3_call_cache_capoeira.read_files_new_output_names -> Papi, draft3_call_cache_capoeira.read_files_different_continueOnReturnCode -> Papi, draft3_call_cache_capoeira.read_files_whitespace -> Papi, draft3_call_cache_capoeira.make_files -> Papi, draft3_call_cache_capoeira.sleep_some_more -> Papi, draft3_call_cache_capoeira.read_files_swapped -> Papi, draft3_call_cache_capoeira.sleep -> Papi, draft3_call_cache_capoeira.read_array_files -> Papi |
|
2018-08-11 03:02:33,286 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - 1 new workflows fetched |
|
2018-08-11 03:02:33,286 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowManagerActor Starting workflow UUID(8f3163de-44c1-42a5-8355-f942d2bb2138) |
|
2018-08-11 03:02:33,286 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowManagerActor Successfully started WorkflowActor-8f3163de-44c1-42a5-8355-f942d2bb2138 |
|
2018-08-11 03:02:33,286 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - Retrieved 1 workflows from the WorkflowStoreActor |
|
2018-08-11 03:02:33,290 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(8f3163de)]: Parsing workflow as WDL 1.0 |
|
2018-08-11 03:02:33,479 cromwell-system-akka.dispatchers.api-dispatcher-68 INFO - Unspecified type (Unspecified version) workflow c29e23a5-326d-4527-acee-75f831bfcc7d submitted |
|
2018-08-11 03:02:33,571 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowExecutionActor-ec4559df-aab4-4384-b86f-03a82e94823d [UUID(ec4559df)]: Starting docker_hash_gcr.gcr |
|
2018-08-11 03:02:33,596 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(8f3163de)]: Call-to-Backend assignments: |
|
2018-08-11 03:02:34,119 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - Unspecified type (Unspecified version) workflow b3b9e784-da75-4ce1-a627-40eaeb4a0c65 submitted |
|
2018-08-11 03:02:34,309 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - 2 new workflows fetched |
|
2018-08-11 03:02:34,309 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor Starting workflow UUID(c29e23a5-326d-4527-acee-75f831bfcc7d) |
|
2018-08-11 03:02:34,309 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor Successfully started WorkflowActor-c29e23a5-326d-4527-acee-75f831bfcc7d |
|
2018-08-11 03:02:34,309 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor Starting workflow UUID(b3b9e784-da75-4ce1-a627-40eaeb4a0c65) |
|
2018-08-11 03:02:34,309 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor Successfully started WorkflowActor-b3b9e784-da75-4ce1-a627-40eaeb4a0c65 |
|
2018-08-11 03:02:34,309 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - Retrieved 2 workflows from the WorkflowStoreActor |
|
2018-08-11 03:02:34,316 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(b3b9e784)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:02:34,333 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - MaterializeWorkflowDescriptorActor [UUID(c29e23a5)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:02:34,454 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - MaterializeWorkflowDescriptorActor [UUID(c29e23a5)]: Call-to-Backend assignments: echo_wf.echo -> Papi |
|
2018-08-11 03:02:34,593 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(b3b9e784)]: Call-to-Backend assignments: optional_declarations.strings -> Papi |
|
2018-08-11 03:02:34,657 cromwell-system-akka.dispatchers.api-dispatcher-68 INFO - Unspecified type (Unspecified version) workflow 180d67b5-fabb-480f-8676-d2eea500799b submitted |
|
2018-08-11 03:02:34,892 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowExecutionActor-3605344c-9aa4-49b2-93fe-0c234ec969c0 [UUID(3605344c)]: Starting requester_pays_localization.localize |
|
2018-08-11 03:02:35,161 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - Unspecified type (Unspecified version) workflow 7f63eea1-9295-4060-aca6-b2dc353c9494 submitted |
|
2018-08-11 03:02:35,329 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - 2 new workflows fetched |
|
2018-08-11 03:02:35,329 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor Starting workflow UUID(180d67b5-fabb-480f-8676-d2eea500799b) |
|
2018-08-11 03:02:35,329 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor Successfully started WorkflowActor-180d67b5-fabb-480f-8676-d2eea500799b |
|
2018-08-11 03:02:35,329 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor Starting workflow UUID(7f63eea1-9295-4060-aca6-b2dc353c9494) |
|
2018-08-11 03:02:35,329 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor Successfully started WorkflowActor-7f63eea1-9295-4060-aca6-b2dc353c9494 |
|
2018-08-11 03:02:35,329 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - Retrieved 2 workflows from the WorkflowStoreActor |
|
2018-08-11 03:02:35,336 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - MaterializeWorkflowDescriptorActor [UUID(7f63eea1)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:02:35,336 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(180d67b5)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:02:35,378 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - MaterializeWorkflowDescriptorActor [UUID(7f63eea1)]: Call-to-Backend assignments: cont_while_possible_scatter.odd_numbers_only -> Papi |
|
2018-08-11 03:02:35,440 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(180d67b5)]: Call-to-Backend assignments: writeToCache.grepAgain -> Papi, writeToCache.print -> Papi, writeToCache.grep -> Papi |
|
2018-08-11 03:02:35,594 cromwell-system-akka.dispatchers.api-dispatcher-68 INFO - CWL (v1.0) workflow 224c1de6-3524-4568-9f2a-7e254ce0348d submitted |
|
2018-08-11 03:02:36,042 cromwell-system-akka.dispatchers.api-dispatcher-68 INFO - CWL (v1.0) workflow bcf2af35-0d99-4072-ab0c-5f1a64fac90b submitted |
|
2018-08-11 03:02:36,345 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - 2 new workflows fetched |
|
2018-08-11 03:02:36,345 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(224c1de6-3524-4568-9f2a-7e254ce0348d) |
|
2018-08-11 03:02:36,345 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-224c1de6-3524-4568-9f2a-7e254ce0348d |
|
2018-08-11 03:02:36,345 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(bcf2af35-0d99-4072-ab0c-5f1a64fac90b) |
|
2018-08-11 03:02:36,345 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-bcf2af35-0d99-4072-ab0c-5f1a64fac90b |
|
2018-08-11 03:02:36,345 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - Retrieved 2 workflows from the WorkflowStoreActor |
|
2018-08-11 03:02:36,356 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - MaterializeWorkflowDescriptorActor [UUID(224c1de6)]: Parsing workflow as CWL v1.0 |
|
2018-08-11 03:02:36,358 INFO - Pre-Processing /tmp/224c1de6-3524-4568-9f2a-7e254ce0348d.temp.66356291548725016/224c1de6-3524-4568-9f2a-7e254ce0348d.cwl |
|
2018-08-11 03:02:36,361 INFO - Pre-Processing /tmp/bcf2af35-0d99-4072-ab0c-5f1a64fac90b.temp.8542738005229085690/bcf2af35-0d99-4072-ab0c-5f1a64fac90b.cwl |
|
2018-08-11 03:02:36,361 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - MaterializeWorkflowDescriptorActor [UUID(bcf2af35)]: Parsing workflow as CWL v1.0 |
|
2018-08-11 03:02:36,459 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - WDL (1.0) workflow e1d30b20-1660-4ed6-93df-6455c2ca6573 submitted |
|
[33m- should fail during execution refresh_token_failure !!! IGNORED !!![0m |
|
2018-08-11 03:02:37,103 WARN - Graceful shutdown took too much time, forcing the shutdown. |
|
2018-08-11 03:02:37,132 WARN - 0 tasks failed to execute before shutdown. |
|
2018-08-11 03:02:37,103 WARN - Graceful shutdown took too much time, forcing the shutdown. |
|
2018-08-11 03:02:37,133 WARN - 0 tasks failed to execute before shutdown. |
|
2018-08-11 03:02:37,155 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - Unspecified type (Unspecified version) workflow 848807ee-0436-4356-aece-177756972877 submitted |
|
2018-08-11 03:02:37,162 ERROR - Test 'successfully run workflow_url_biscayne_sub_wfs' with workflow id 'dbaaf524-3e51-42a4-a4a3-acabad947aae' failed on attempt 1 of 3 |
|
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded |
|
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181) |
|
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138) |
|
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304) |
|
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125) |
|
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70) |
|
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43) |
|
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44) |
|
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284) |
|
at scala.concurrent.Promise.complete(Promise.scala:49) |
|
at scala.concurrent.Promise.complete$(Promise.scala:48) |
|
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183) |
|
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
2018-08-11 03:02:37,165 ERROR - Test 'call cache the second run of floating_tags' with workflow id '9ba48877-5476-478c-8343-e7cfecccf1b7' failed on attempt 1 of 3 |
|
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded |
|
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181) |
|
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138) |
|
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304) |
|
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125) |
|
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70) |
|
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43) |
|
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44) |
|
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284) |
|
at scala.concurrent.Promise.complete(Promise.scala:49) |
|
at scala.concurrent.Promise.complete$(Promise.scala:48) |
|
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183) |
|
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
2018-08-11 03:02:37,212 cromwell-system-akka.dispatchers.api-dispatcher-68 INFO - Unspecified type (Unspecified version) workflow 4ce7acb7-1ae4-462d-a95e-ffec8e13ace8 submitted |
|
2018-08-11 03:02:37,218 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - Unspecified type (Unspecified version) workflow 91d6d48d-3a01-4ce3-ac67-f6b6f22a059c submitted |
|
2018-08-11 03:02:37,372 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - 4 new workflows fetched |
|
2018-08-11 03:02:37,372 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(e1d30b20-1660-4ed6-93df-6455c2ca6573) |
|
2018-08-11 03:02:37,372 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-e1d30b20-1660-4ed6-93df-6455c2ca6573 |
|
2018-08-11 03:02:37,372 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(848807ee-0436-4356-aece-177756972877) |
|
2018-08-11 03:02:37,373 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-848807ee-0436-4356-aece-177756972877 |
|
2018-08-11 03:02:37,373 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(4ce7acb7-1ae4-462d-a95e-ffec8e13ace8) |
|
2018-08-11 03:02:37,373 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-4ce7acb7-1ae4-462d-a95e-ffec8e13ace8 |
|
2018-08-11 03:02:37,373 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(91d6d48d-3a01-4ce3-ac67-f6b6f22a059c) |
|
2018-08-11 03:02:37,373 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-91d6d48d-3a01-4ce3-ac67-f6b6f22a059c |
|
2018-08-11 03:02:37,373 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - Retrieved 4 workflows from the WorkflowStoreActor |
|
2018-08-11 03:02:37,376 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(848807ee)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:02:37,384 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - MaterializeWorkflowDescriptorActor [UUID(4ce7acb7)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:02:37,389 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(e1d30b20)]: Parsing workflow as WDL 1.0 |
|
2018-08-11 03:02:37,431 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(848807ee)]: Call-to-Backend assignments: dont_cache_to_failed_jobs.failing_task -> Papi |
|
2018-08-11 03:02:37,480 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(91d6d48d)]: Parsing workflow as WDL Biscayne |
|
2018-08-11 03:02:37,586 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - MaterializeWorkflowDescriptorActor [UUID(4ce7acb7)]: Call-to-Backend assignments: floating_tags.findAgain -> Papi, floating_tags.echo -> Papi, floating_tags.find -> Papi, floating_tags.echoAgain -> Papi |
|
2018-08-11 03:02:37,695 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(e1d30b20)]: Call-to-Backend assignments: array_io.concat -> Papi, array_io.count_lines -> Papi, array_io.count_lines_array -> Papi, array_io.mk_file -> Papi, array_io.serialize -> Papi |
|
2018-08-11 03:02:37,708 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(91d6d48d)]: Call-to-Backend assignments: foo_wf.add5 -> Papi |
|
2018-08-11 03:02:38,165 WARN - Initiated a temporary lockdown because of exception: An exception occurred while submitting the event to the Sentry server. |
|
2018-08-11 03:02:38,165 ERROR - An exception occurred while sending the event to Sentry. |
|
io.sentry.connection.ConnectionException: An exception occurred while submitting the event to the Sentry server. |
|
at io.sentry.connection.HttpConnection.doSend(HttpConnection.java:216) |
|
at io.sentry.connection.AbstractConnection.send(AbstractConnection.java:76) |
|
at io.sentry.connection.AsyncConnection$EventSubmitter.run(AsyncConnection.java:185) |
|
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) |
|
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) |
|
at java.lang.Thread.run(Thread.java:748) |
|
Caused by: java.net.SocketTimeoutException: connect timed out |
|
at java.net.PlainSocketImpl.socketConnect(Native Method) |
|
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350) |
|
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206) |
|
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188) |
|
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392) |
|
at java.net.Socket.connect(Socket.java:589) |
|
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673) |
|
at sun.net.NetworkClient.doConnect(NetworkClient.java:175) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558) |
|
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264) |
|
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177) |
|
at sun.net.www.protocol.https.HttpsURLConnectionImpl.connect(HttpsURLConnectionImpl.java:153) |
|
at io.sentry.connection.HttpConnection.doSend(HttpConnection.java:168) |
|
... 5 common frames omitted |
|
2018-08-11 03:02:38,624 cromwell-system-akka.dispatchers.api-dispatcher-68 INFO - CWL (v1.0) workflow 57af2395-af84-4d67-9146-27bd93d745f9 submitted |
|
2018-08-11 03:02:38,712 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowExecutionActor-8f3163de-44c1-42a5-8355-f942d2bb2138 [UUID(8f3163de)]: Workflow default_input_overrides complete. Final Outputs: |
|
{ |
|
"default_input_overrides.z_out": 50505, |
|
"default_input_overrides.b2_out": 20202, |
|
"default_input_overrides.b_out": 20202, |
|
"default_input_overrides.a2_out": 30303, |
|
"default_input_overrides.d_out": 75, |
|
"default_input_overrides.c2_out": 40404, |
|
"default_input_overrides.c_out": 75, |
|
"default_input_overrides.a_out": 10101, |
|
"default_input_overrides.z2_out": 50505, |
|
"default_input_overrides.d2_out": 75 |
|
} |
|
2018-08-11 03:02:38,718 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor WorkflowActor-8f3163de-44c1-42a5-8355-f942d2bb2138 is in a terminal state: WorkflowSucceededState |
|
2018-08-11 03:02:38,980 ERROR - Test 'successfully run workflow_url_http_relative_imports' with workflow id '1fc6af14-ab85-453d-b6dc-297f3cf9cf65' failed on attempt 1 of 3 |
|
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded |
|
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181) |
|
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138) |
|
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304) |
|
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125) |
|
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70) |
|
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43) |
|
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44) |
|
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284) |
|
at scala.concurrent.Promise.complete(Promise.scala:49) |
|
at scala.concurrent.Promise.complete$(Promise.scala:48) |
|
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183) |
|
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
2018-08-11 03:02:39,000 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - Unspecified type (Unspecified version) workflow e3f1efd0-a097-4103-92fa-0a888f1c39ab submitted |
|
2018-08-11 03:02:39,196 ERROR - Test 'successfully run select_functions' with workflow id '62091ef4-05a2-4b3d-83d6-c084fd798833' failed on attempt 1 of 3 |
|
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded |
|
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181) |
|
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138) |
|
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304) |
|
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125) |
|
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70) |
|
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43) |
|
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44) |
|
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284) |
|
at scala.concurrent.Promise.complete(Promise.scala:49) |
|
at scala.concurrent.Promise.complete$(Promise.scala:48) |
|
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183) |
|
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
2018-08-11 03:02:39,219 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - Unspecified type (Unspecified version) workflow 2a33a921-66f8-4534-ab8d-bb9cbc388882 submitted |
|
2018-08-11 03:02:39,393 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - MaterializeWorkflowDescriptorActor [UUID(05f3189b)]: Call-to-Backend assignments: iwdr_input_string -> Papi |
|
2018-08-11 03:02:39,409 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - 3 new workflows fetched |
|
2018-08-11 03:02:39,409 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor Starting workflow UUID(57af2395-af84-4d67-9146-27bd93d745f9) |
|
2018-08-11 03:02:39,409 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor Successfully started WorkflowActor-57af2395-af84-4d67-9146-27bd93d745f9 |
|
2018-08-11 03:02:39,409 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor Starting workflow UUID(e3f1efd0-a097-4103-92fa-0a888f1c39ab) |
|
2018-08-11 03:02:39,409 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor Successfully started WorkflowActor-e3f1efd0-a097-4103-92fa-0a888f1c39ab |
|
2018-08-11 03:02:39,409 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor Starting workflow UUID(2a33a921-66f8-4534-ab8d-bb9cbc388882) |
|
2018-08-11 03:02:39,409 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor Successfully started WorkflowActor-2a33a921-66f8-4534-ab8d-bb9cbc388882 |
|
2018-08-11 03:02:39,409 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - Retrieved 3 workflows from the WorkflowStoreActor |
|
2018-08-11 03:02:39,418 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(2a33a921)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:02:39,428 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - MaterializeWorkflowDescriptorActor [UUID(57af2395)]: Parsing workflow as CWL v1.0 |
|
2018-08-11 03:02:39,453 INFO - Pre-Processing /tmp/57af2395-af84-4d67-9146-27bd93d745f9.temp.4689439469116823829/57af2395-af84-4d67-9146-27bd93d745f9.cwl |
|
2018-08-11 03:02:39,496 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(e3f1efd0)]: Parsing workflow as WDL Biscayne |
|
2018-08-11 03:02:39,792 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(2a33a921)]: Call-to-Backend assignments: selection_functions.makeStringTrue -> Papi, selection_functions.makeStringFalse -> Papi |
|
2018-08-11 03:02:39,794 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(e3f1efd0)]: Call-to-Backend assignments: foo_wf.add5 -> Papi |
|
2018-08-11 03:02:40,052 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - Unspecified type (Unspecified version) workflow 142ef04d-5716-4eee-9c6d-6450d8b1d241 submitted |
|
2018-08-11 03:02:40,432 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - 1 new workflows fetched |
|
2018-08-11 03:02:40,438 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor Starting workflow UUID(142ef04d-5716-4eee-9c6d-6450d8b1d241) |
|
2018-08-11 03:02:40,438 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor Successfully started WorkflowActor-142ef04d-5716-4eee-9c6d-6450d8b1d241 |
|
2018-08-11 03:02:40,438 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - Retrieved 1 workflows from the WorkflowStoreActor |
|
2018-08-11 03:02:40,441 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(142ef04d)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:02:40,688 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(142ef04d)]: Call-to-Backend assignments: complex_types_files.make_true -> Papi, complex_types_files.map_cat -> Papi, complex_types_files.maybe_cats -> Papi, complex_types_files.make_false -> Papi, complex_types_files.make_file -> Papi, complex_types_files.array_cat -> Papi |
|
2018-08-11 03:02:40,841 ERROR - Test 'successfully run space' with workflow id 'fdc9eff4-89c2-4454-8ac9-c29c0caa4598' failed on attempt 1 of 3 |
|
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded |
|
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181) |
|
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138) |
|
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304) |
|
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125) |
|
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70) |
|
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43) |
|
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44) |
|
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284) |
|
at scala.concurrent.Promise.complete(Promise.scala:49) |
|
at scala.concurrent.Promise.complete$(Promise.scala:48) |
|
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183) |
|
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
2018-08-11 03:02:40,862 cromwell-system-akka.dispatchers.api-dispatcher-67 INFO - Unspecified type (Unspecified version) workflow 3d659be9-2e78-400b-82cf-7bc586b2145e submitted |
|
2018-08-11 03:02:40,893 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - Unspecified type (Unspecified version) workflow 01b6dcd8-938f-4c09-b89c-46c044a5a885 submitted |
|
2018-08-11 03:02:41,448 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - WDL (1.0) workflow c73d78d1-6fd7-4a94-a7fe-95ddfed4aa4b submitted |
|
2018-08-11 03:02:41,449 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - 2 new workflows fetched |
|
2018-08-11 03:02:41,449 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(3d659be9-2e78-400b-82cf-7bc586b2145e) |
|
2018-08-11 03:02:41,449 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-3d659be9-2e78-400b-82cf-7bc586b2145e |
|
2018-08-11 03:02:41,449 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(01b6dcd8-938f-4c09-b89c-46c044a5a885) |
|
2018-08-11 03:02:41,450 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-01b6dcd8-938f-4c09-b89c-46c044a5a885 |
|
2018-08-11 03:02:41,450 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - Retrieved 2 workflows from the WorkflowStoreActor |
|
2018-08-11 03:02:41,460 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(01b6dcd8)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:02:41,463 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - MaterializeWorkflowDescriptorActor [UUID(3d659be9)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:02:41,551 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(01b6dcd8)]: Call-to-Backend assignments: dot_dir_stuck_running.read_path_that_succeeds_but_does_not_go_to_next_call -> Papi, dot_dir_stuck_running.write_path -> Papi |
|
2018-08-11 03:02:41,608 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - MaterializeWorkflowDescriptorActor [UUID(3d659be9)]: Call-to-Backend assignments: space.goodbye -> Papi, space.hello -> Papi |
|
2018-08-11 03:02:42,075 cromwell-system-akka.dispatchers.api-dispatcher-68 INFO - WDL (1.0) workflow 509baaba-9260-416c-9ee9-b3dc29276eb3 submitted |
|
2018-08-11 03:02:42,469 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - 2 new workflows fetched |
|
2018-08-11 03:02:42,469 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(c73d78d1-6fd7-4a94-a7fe-95ddfed4aa4b) |
|
2018-08-11 03:02:42,469 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-c73d78d1-6fd7-4a94-a7fe-95ddfed4aa4b |
|
2018-08-11 03:02:42,469 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(509baaba-9260-416c-9ee9-b3dc29276eb3) |
|
2018-08-11 03:02:42,469 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-509baaba-9260-416c-9ee9-b3dc29276eb3 |
|
2018-08-11 03:02:42,469 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - Retrieved 2 workflows from the WorkflowStoreActor |
|
2018-08-11 03:02:42,482 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(509baaba)]: Parsing workflow as WDL 1.0 |
|
2018-08-11 03:02:42,488 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(c73d78d1)]: Parsing workflow as WDL 1.0 |
|
2018-08-11 03:02:42,516 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - Unspecified type (Unspecified version) workflow d85656f8-b4f6-4254-877f-67eaf205ca61 submitted |
|
2018-08-11 03:02:42,587 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(509baaba)]: Call-to-Backend assignments: struct_localize_delocalize.struct_delocalize -> Papi, struct_localize_delocalize.struct_localize -> Papi |
|
2018-08-11 03:02:42,589 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(c73d78d1)]: Call-to-Backend assignments: |
|
2018-08-11 03:02:43,065 cromwell-system-akka.dispatchers.api-dispatcher-68 INFO - Unspecified type (Unspecified version) workflow 468f5a17-28ba-48a3-b3cc-61a3d1ab7fe3 submitted |
|
2018-08-11 03:02:43,486 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - 2 new workflows fetched |
|
2018-08-11 03:02:43,487 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor Starting workflow UUID(d85656f8-b4f6-4254-877f-67eaf205ca61) |
|
2018-08-11 03:02:43,487 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor Successfully started WorkflowActor-d85656f8-b4f6-4254-877f-67eaf205ca61 |
|
2018-08-11 03:02:43,487 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor Starting workflow UUID(468f5a17-28ba-48a3-b3cc-61a3d1ab7fe3) |
|
2018-08-11 03:02:43,487 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor Successfully started WorkflowActor-468f5a17-28ba-48a3-b3cc-61a3d1ab7fe3 |
|
2018-08-11 03:02:43,487 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - Retrieved 2 workflows from the WorkflowStoreActor |
|
2018-08-11 03:02:43,492 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(d85656f8)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:02:43,494 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(468f5a17)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:02:43,567 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(468f5a17)]: Call-to-Backend assignments: simple_if.runMeFalse -> Papi, simple_if.runMeTrue -> Papi |
|
2018-08-11 03:02:43,601 cromwell-system-akka.dispatchers.api-dispatcher-68 INFO - Unspecified type (Unspecified version) workflow 970888c3-bda2-4314-9f29-97b938e0da7b submitted |
|
2018-08-11 03:02:44,052 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(d85656f8)]: Call-to-Backend assignments: sub_decls.first_task -> Papi, sub_decls.second_task -> Papi |
|
2018-08-11 03:02:44,471 cromwell-system-akka.dispatchers.api-dispatcher-68 INFO - WDL (1.0) workflow 5f61c4de-3e98-4c84-92e2-559be38bc189 submitted |
|
2018-08-11 03:02:44,506 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - 2 new workflows fetched |
|
2018-08-11 03:02:44,506 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowManagerActor Starting workflow UUID(970888c3-bda2-4314-9f29-97b938e0da7b) |
|
2018-08-11 03:02:44,506 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowManagerActor Successfully started WorkflowActor-970888c3-bda2-4314-9f29-97b938e0da7b |
|
2018-08-11 03:02:44,506 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowManagerActor Starting workflow UUID(5f61c4de-3e98-4c84-92e2-559be38bc189) |
|
2018-08-11 03:02:44,506 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowManagerActor Successfully started WorkflowActor-5f61c4de-3e98-4c84-92e2-559be38bc189 |
|
2018-08-11 03:02:44,507 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - Retrieved 2 workflows from the WorkflowStoreActor |
|
2018-08-11 03:02:44,508 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(5f61c4de)]: Parsing workflow as WDL 1.0 |
|
2018-08-11 03:02:44,510 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(970888c3)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:02:44,679 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(970888c3)]: Call-to-Backend assignments: array_literal_locations.array_literal_locations_i -> Papi, array_literal_locations.array_literal_locations_ii -> Papi |
|
2018-08-11 03:02:44,837 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(5f61c4de)]: Call-to-Backend assignments: |
|
2018-08-11 03:02:44,963 cromwell-system-akka.dispatchers.engine-dispatcher-31 ERROR - WorkflowManagerActor Workflow 106ab6ed-a8de-45e3-aaf2-f8136ed1c50e failed (during InitializingWorkflowState): Task invalid_runtime_attributes has an invalid runtime attribute continueOnReturnCode = Valid(WomString(oops)) |
|
2018-08-11 03:02:44,965 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor WorkflowActor-106ab6ed-a8de-45e3-aaf2-f8136ed1c50e is in a terminal state: WorkflowFailedState |
|
2018-08-11 03:02:45,256 cromwell-system-akka.dispatchers.api-dispatcher-68 INFO - Unspecified type (Unspecified version) workflow 43c43725-29a7-474d-9f13-77b498af8eb8 submitted |
|
2018-08-11 03:02:45,437 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - MaterializeWorkflowDescriptorActor [UUID(224c1de6)]: Call-to-Backend assignments: interpolatedStrings -> Papi |
|
2018-08-11 03:02:45,525 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - 1 new workflows fetched |
|
2018-08-11 03:02:45,525 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(43c43725-29a7-474d-9f13-77b498af8eb8) |
|
2018-08-11 03:02:45,525 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-43c43725-29a7-474d-9f13-77b498af8eb8 |
|
2018-08-11 03:02:45,526 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - Retrieved 1 workflows from the WorkflowStoreActor |
|
2018-08-11 03:02:45,532 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(43c43725)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:02:45,540 cromwell-system-akka.dispatchers.engine-dispatcher-31 ERROR - WorkflowManagerActor Workflow 43c43725-29a7-474d-9f13-77b498af8eb8 failed (during MaterializingWorkflowDescriptorState): cromwell.engine.workflow.lifecycle.materialization.MaterializeWorkflowDescriptorActor$$anon$1: Workflow input processing failed: |
|
ERROR: Unexpected symbol (line 1, col 15) when parsing 'task'. |
|
|
|
Expected lbrace, got }. |
|
|
|
task blahblah }{ |
|
^ |
|
|
|
$task = :task :identifier :lbrace $_gen3 $_gen4 :rbrace -> Task( name=$1, declarations=$3, sections=$4 ) |
|
|
|
at cromwell.engine.workflow.lifecycle.materialization.MaterializeWorkflowDescriptorActor.cromwell$engine$workflow$lifecycle$materialization$MaterializeWorkflowDescriptorActor$$workflowInitializationFailed(MaterializeWorkflowDescriptorActor.scala:209) |
|
at cromwell.engine.workflow.lifecycle.materialization.MaterializeWorkflowDescriptorActor$$anonfun$2.applyOrElse(MaterializeWorkflowDescriptorActor.scala:179) |
|
at cromwell.engine.workflow.lifecycle.materialization.MaterializeWorkflowDescriptorActor$$anonfun$2.applyOrElse(MaterializeWorkflowDescriptorActor.scala:174) |
|
at scala.runtime.AbstractPartialFunction.apply(AbstractPartialFunction.scala:34) |
|
at akka.actor.FSM.processEvent(FSM.scala:670) |
|
at akka.actor.FSM.processEvent$(FSM.scala:667) |
|
at cromwell.engine.workflow.lifecycle.materialization.MaterializeWorkflowDescriptorActor.akka$actor$LoggingFSM$$super$processEvent(MaterializeWorkflowDescriptorActor.scala:132) |
|
at akka.actor.LoggingFSM.processEvent(FSM.scala:806) |
|
at akka.actor.LoggingFSM.processEvent$(FSM.scala:788) |
|
at cromwell.engine.workflow.lifecycle.materialization.MaterializeWorkflowDescriptorActor.processEvent(MaterializeWorkflowDescriptorActor.scala:132) |
|
at akka.actor.FSM.akka$actor$FSM$$processMsg(FSM.scala:664) |
|
at akka.actor.FSM$$anonfun$receive$1.applyOrElse(FSM.scala:658) |
|
at akka.actor.Actor.aroundReceive(Actor.scala:517) |
|
at akka.actor.Actor.aroundReceive$(Actor.scala:515) |
|
at cromwell.engine.workflow.lifecycle.materialization.MaterializeWorkflowDescriptorActor.aroundReceive(MaterializeWorkflowDescriptorActor.scala:132) |
|
at akka.actor.ActorCell.receiveMessage(ActorCell.scala:588) |
|
at akka.actor.ActorCell.invoke(ActorCell.scala:557) |
|
at akka.dispatch.Mailbox.processMailbox(Mailbox.scala:258) |
|
at akka.dispatch.Mailbox.run(Mailbox.scala:225) |
|
at akka.dispatch.Mailbox.exec(Mailbox.scala:235) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
|
|
2018-08-11 03:02:45,550 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowManagerActor WorkflowActor-43c43725-29a7-474d-9f13-77b498af8eb8 is in a terminal state: WorkflowFailedState |
|
2018-08-11 03:02:45,789 cromwell-system-akka.dispatchers.api-dispatcher-68 INFO - Unspecified type (Unspecified version) workflow 3e3717bf-63ed-4398-a812-6236dc6a5c9d submitted |
|
2018-08-11 03:02:45,841 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - 338cdc07-5917-4db5-a7dd-96dc6e37615c-SubWorkflowActor-SubWorkflow-draft3_infer_version:-1:1 [UUID(338cdc07)]: Workflow draft3_infer_version complete. Final Outputs: |
|
{ |
|
"draft3_infer_version.j": 660 |
|
} |
|
2018-08-11 03:02:46,457 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - MaterializeWorkflowDescriptorActor [UUID(bcf2af35)]: Call-to-Backend assignments: step1 -> Papi |
|
2018-08-11 03:02:46,462 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowExecutionActor-989e9d1f-384e-4b14-9ffa-511c6f4f461b [UUID(989e9d1f)]: Starting read_file_limits.readFloat, read_file_limits.readInt, read_file_limits.readObjects, read_file_limits.readObject, read_file_limits.readLines, read_file_limits.readBoolean, read_file_limits.readTsv, read_file_limits.readString, read_file_limits.readJson, read_file_limits.readMap |
|
2018-08-11 03:02:46,548 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - 1 new workflows fetched |
|
2018-08-11 03:02:46,549 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowManagerActor Starting workflow UUID(3e3717bf-63ed-4398-a812-6236dc6a5c9d) |
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2018-08-11 03:02:46,549 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowManagerActor Successfully started WorkflowActor-3e3717bf-63ed-4398-a812-6236dc6a5c9d |
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2018-08-11 03:02:46,549 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - Retrieved 1 workflows from the WorkflowStoreActor |
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2018-08-11 03:02:46,552 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(3e3717bf)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:02:46,763 cromwell-system-akka.dispatchers.api-dispatcher-67 INFO - WDL (1.0) workflow d224abcb-8f46-4c3d-b78d-af3614e67e64 submitted |
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2018-08-11 03:02:46,987 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(3e3717bf)]: Call-to-Backend assignments: ifs_in_scatters.mirror -> Papi, ifs_in_scatters.init -> Papi, ifs_in_scatters.validate_int -> Papi, ifs_in_scatters.init -> Papi, ifs_in_scatters.mirror -> Papi, ifs_in_scatters.validate_int -> Papi |
|
2018-08-11 03:02:47,152 cromwell-system-akka.dispatchers.api-dispatcher-68 INFO - Unspecified type (Unspecified version) workflow c0cc1872-5be8-43aa-b059-6d154162648b submitted |
|
2018-08-11 03:02:47,175 cromwell-system-akka.dispatchers.engine-dispatcher-25 ERROR - WorkflowManagerActor Workflow 78f788f6-f7be-411b-b507-87d36e8c153b failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out |
|
at java.net.PlainSocketImpl.socketConnect(Native Method) |
|
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350) |
|
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206) |
|
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188) |
|
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392) |
|
at java.net.Socket.connect(Socket.java:589) |
|
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673) |
|
at sun.net.NetworkClient.doConnect(NetworkClient.java:175) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558) |
|
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264) |
|
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291) |
|
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250) |
|
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469) |
|
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101) |
|
at scala.Option.map(Option.scala:146) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121) |
|
at scala.util.Success.$anonfun$map$1(Try.scala:251) |
|
at scala.util.Success.map(Try.scala:209) |
|
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288) |
|
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29) |
|
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
|
|
2018-08-11 03:02:47,175 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor WorkflowActor-78f788f6-f7be-411b-b507-87d36e8c153b is in a terminal state: WorkflowFailedState |
|
2018-08-11 03:02:47,500 cromwell-system-akka.dispatchers.api-dispatcher-67 INFO - Unspecified type (Unspecified version) workflow 9f289b57-a9fe-4508-b98d-561979521498 submitted |
|
2018-08-11 03:02:47,568 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - 3 new workflows fetched |
|
2018-08-11 03:02:47,568 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor Starting workflow UUID(d224abcb-8f46-4c3d-b78d-af3614e67e64) |
|
2018-08-11 03:02:47,568 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor Successfully started WorkflowActor-d224abcb-8f46-4c3d-b78d-af3614e67e64 |
|
2018-08-11 03:02:47,568 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor Starting workflow UUID(c0cc1872-5be8-43aa-b059-6d154162648b) |
|
2018-08-11 03:02:47,568 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor Successfully started WorkflowActor-c0cc1872-5be8-43aa-b059-6d154162648b |
|
2018-08-11 03:02:47,568 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor Starting workflow UUID(9f289b57-a9fe-4508-b98d-561979521498) |
|
2018-08-11 03:02:47,568 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor Successfully started WorkflowActor-9f289b57-a9fe-4508-b98d-561979521498 |
|
2018-08-11 03:02:47,568 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - Retrieved 3 workflows from the WorkflowStoreActor |
|
2018-08-11 03:02:47,571 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - MaterializeWorkflowDescriptorActor [UUID(d224abcb)]: Parsing workflow as WDL 1.0 |
|
2018-08-11 03:02:47,572 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(c0cc1872)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:02:47,577 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - MaterializeWorkflowDescriptorActor [UUID(9f289b57)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:02:47,731 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowExecutionActor-c73d78d1-6fd7-4a94-a7fe-95ddfed4aa4b [UUID(c73d78d1)]: Workflow draft3_http_imports complete. Final Outputs: |
|
{ |
|
"draft3_http_imports.j": 660 |
|
} |
|
2018-08-11 03:02:47,757 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowManagerActor WorkflowActor-c73d78d1-6fd7-4a94-a7fe-95ddfed4aa4b is in a terminal state: WorkflowSucceededState |
|
2018-08-11 03:02:47,771 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(c0cc1872)]: Call-to-Backend assignments: file_outputs_from_input_wf.file_outputs_from_input -> Papi |
|
2018-08-11 03:02:47,776 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - MaterializeWorkflowDescriptorActor [UUID(9f289b57)]: Call-to-Backend assignments: cont_while_possible.delayedTask -> Papi, cont_while_possible.shouldNotStart -> Papi, cont_while_possible.boundToFail -> Papi, cont_while_possible.shouldSucceed -> Papi |
|
2018-08-11 03:02:47,936 cromwell-system-akka.dispatchers.api-dispatcher-67 INFO - Unspecified type (Unspecified version) workflow 5aee7025-daea-49ef-97fc-8355f508563d submitted |
|
2018-08-11 03:02:47,978 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - MaterializeWorkflowDescriptorActor [UUID(d224abcb)]: Call-to-Backend assignments: sizeenginefunction.make_a_file -> Papi, sizeenginefunction.size -> Papi |
|
2018-08-11 03:02:48,030 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowExecutionActor-12d310ee-65df-4ed3-9ac8-8ed5316f7722 [UUID(12d310ee)]: Starting iwdr_inline_file |
|
2018-08-11 03:02:48,086 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - MaterializeWorkflowDescriptorActor [UUID(57af2395)]: Call-to-Backend assignments: cwl-cache-within-workflow.bar -> Papi, cwl-cache-within-workflow.foo -> Papi, cwl-cache-within-workflow.re-bar -> Papi |
|
2018-08-11 03:02:48,227 cromwell-system-akka.dispatchers.api-dispatcher-68 INFO - Unspecified type (Unspecified version) workflow d3fbad9b-3fb1-4f7c-866e-cf2568ef76e5 submitted |
|
2018-08-11 03:02:48,397 cromwell-system-akka.dispatchers.api-dispatcher-67 INFO - WDL (1.0) workflow 4506a204-53c2-42a1-95d8-0ca23ad2a44e submitted |
|
2018-08-11 03:02:48,505 cromwell-system-akka.dispatchers.api-dispatcher-68 INFO - Unspecified type (Unspecified version) workflow 5b027489-94b7-4705-a43c-e68ff1e0ef52 submitted |
|
2018-08-11 03:02:48,592 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - 4 new workflows fetched |
|
2018-08-11 03:02:48,592 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor Starting workflow UUID(5aee7025-daea-49ef-97fc-8355f508563d) |
|
2018-08-11 03:02:48,592 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor Successfully started WorkflowActor-5aee7025-daea-49ef-97fc-8355f508563d |
|
2018-08-11 03:02:48,592 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor Starting workflow UUID(d3fbad9b-3fb1-4f7c-866e-cf2568ef76e5) |
|
2018-08-11 03:02:48,594 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor Successfully started WorkflowActor-d3fbad9b-3fb1-4f7c-866e-cf2568ef76e5 |
|
2018-08-11 03:02:48,595 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor Starting workflow UUID(4506a204-53c2-42a1-95d8-0ca23ad2a44e) |
|
2018-08-11 03:02:48,595 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor Successfully started WorkflowActor-4506a204-53c2-42a1-95d8-0ca23ad2a44e |
|
2018-08-11 03:02:48,595 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor Starting workflow UUID(5b027489-94b7-4705-a43c-e68ff1e0ef52) |
|
2018-08-11 03:02:48,595 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor Successfully started WorkflowActor-5b027489-94b7-4705-a43c-e68ff1e0ef52 |
|
2018-08-11 03:02:48,595 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - Retrieved 4 workflows from the WorkflowStoreActor |
|
2018-08-11 03:02:48,603 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - MaterializeWorkflowDescriptorActor [UUID(5b027489)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:02:48,603 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - MaterializeWorkflowDescriptorActor [UUID(4506a204)]: Parsing workflow as WDL 1.0 |
|
2018-08-11 03:02:48,603 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(d3fbad9b)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:02:48,612 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(5aee7025)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:02:48,691 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - MaterializeWorkflowDescriptorActor [UUID(4506a204)]: Call-to-Backend assignments: |
|
2018-08-11 03:02:48,701 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - WorkflowExecutionActor-b60dbf01-8ac7-4207-b0b5-58b664b6768b [UUID(b60dbf01)]: Starting draft3_nio_file.mk_files, draft3_nio_file.mk_more_files |
|
2018-08-11 03:02:48,741 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(5aee7025)]: Call-to-Backend assignments: dontglobinputs.length -> Papi, dontglobinputs.createfile -> Papi, dontglobinputs.globtask -> Papi |
|
2018-08-11 03:02:48,846 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - MaterializeWorkflowDescriptorActor [UUID(5b027489)]: Call-to-Backend assignments: array_io.count_lines_array -> Papi, array_io.serialize -> Papi, array_io.count_lines -> Papi, array_io.concat -> Papi, array_io.mk_file -> Papi |
|
2018-08-11 03:02:48,997 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(d3fbad9b)]: Call-to-Backend assignments: globbingBehavior.writeFiles -> Papi, globbingBehavior.unexpectedReturnCode -> Papi, globbingBehavior.writeLinks -> Papi |
|
2018-08-11 03:02:49,040 cromwell-system-akka.dispatchers.api-dispatcher-67 INFO - WDL (1.0) workflow 35961b0c-6e06-4d55-8dac-6f62ccea217b submitted |
|
2018-08-11 03:02:49,211 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowExecutionActor-f8901107-48c1-427d-a503-d1b399a14673 [UUID(f8901107)]: Condition met: 'true'. Running conditional section |
|
2018-08-11 03:02:49,244 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowExecutionActor-f8901107-48c1-427d-a503-d1b399a14673 [UUID(f8901107)]: Condition met: 'true'. Running conditional section |
|
2018-08-11 03:02:49,244 cromwell-system-akka.dispatchers.api-dispatcher-68 INFO - Unspecified type (Unspecified version) workflow 2fb6debd-2af2-4054-8b2f-868061c6c4e9 submitted |
|
2018-08-11 03:02:49,445 cromwell-system-akka.dispatchers.api-dispatcher-67 INFO - Unspecified type (Unspecified version) workflow 08ce6481-a38f-4406-b3a1-6b44c21695dd submitted |
|
2018-08-11 03:02:49,613 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - 3 new workflows fetched |
|
2018-08-11 03:02:49,613 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowManagerActor Starting workflow UUID(35961b0c-6e06-4d55-8dac-6f62ccea217b) |
|
2018-08-11 03:02:49,613 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowManagerActor Successfully started WorkflowActor-35961b0c-6e06-4d55-8dac-6f62ccea217b |
|
2018-08-11 03:02:49,613 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowManagerActor Starting workflow UUID(2fb6debd-2af2-4054-8b2f-868061c6c4e9) |
|
2018-08-11 03:02:49,613 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowManagerActor Successfully started WorkflowActor-2fb6debd-2af2-4054-8b2f-868061c6c4e9 |
|
2018-08-11 03:02:49,613 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowManagerActor Starting workflow UUID(08ce6481-a38f-4406-b3a1-6b44c21695dd) |
|
2018-08-11 03:02:49,613 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowManagerActor Successfully started WorkflowActor-08ce6481-a38f-4406-b3a1-6b44c21695dd |
|
2018-08-11 03:02:49,613 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - Retrieved 3 workflows from the WorkflowStoreActor |
|
2018-08-11 03:02:49,617 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(35961b0c)]: Parsing workflow as WDL 1.0 |
|
2018-08-11 03:02:49,621 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - MaterializeWorkflowDescriptorActor [UUID(08ce6481)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:02:49,626 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(2fb6debd)]: Parsing workflow as WDL 1.0 |
|
2018-08-11 03:02:49,659 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(2fb6debd)]: Call-to-Backend assignments: |
|
2018-08-11 03:02:49,736 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(35961b0c)]: Call-to-Backend assignments: globs.summer -> Papi, globs.int_reader -> Papi, globs.glob_output -> Papi |
|
2018-08-11 03:02:49,828 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - MaterializeWorkflowDescriptorActor [UUID(08ce6481)]: Call-to-Backend assignments: countEvens.countTo -> Papi, sub_workflow_interactions_scatter.secondHelloInScatter -> Papi, sub_workflow_interactions_scatter.helloInScatter -> Papi, sub_workflow_interactions_scatter.read -> Papi, countEvens.filterEvens -> Papi |
|
2018-08-11 03:02:49,930 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - Unspecified type (Unspecified version) workflow 8f4fec30-a485-4bcf-968e-565012cc9eb9 submitted |
|
2018-08-11 03:02:49,951 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowExecutionActor-5f61c4de-3e98-4c84-92e2-559be38bc189 [UUID(5f61c4de)]: Condition NOT met: '(i > 1)'. Bypassing conditional section |
|
2018-08-11 03:02:49,959 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowExecutionActor-5f61c4de-3e98-4c84-92e2-559be38bc189 [UUID(5f61c4de)]: Condition met: '(i > 1)'. Running conditional section |
|
2018-08-11 03:02:49,959 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowExecutionActor-5f61c4de-3e98-4c84-92e2-559be38bc189 [UUID(5f61c4de)]: Condition met: '(i > 1)'. Running conditional section |
|
2018-08-11 03:02:50,423 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - WDL (1.0) workflow b70ad92d-5860-45a4-a065-4bbf8cc38519 submitted |
|
2018-08-11 03:02:50,601 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowExecutionActor-8610dbc7-7492-4141-ab1a-ce7cb9c4b73f [UUID(8610dbc7)]: Starting wf_hello.hello |
|
2018-08-11 03:02:50,630 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - Unspecified type (Unspecified version) workflow a2d48a30-a2d8-466f-9b5c-524998b51391 submitted |
|
2018-08-11 03:02:50,638 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - 3 new workflows fetched |
|
2018-08-11 03:02:50,639 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - WorkflowManagerActor Starting workflow UUID(8f4fec30-a485-4bcf-968e-565012cc9eb9) |
|
2018-08-11 03:02:50,639 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - WorkflowManagerActor Successfully started WorkflowActor-8f4fec30-a485-4bcf-968e-565012cc9eb9 |
|
2018-08-11 03:02:50,639 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - WorkflowManagerActor Starting workflow UUID(b70ad92d-5860-45a4-a065-4bbf8cc38519) |
|
2018-08-11 03:02:50,639 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - WorkflowManagerActor Successfully started WorkflowActor-b70ad92d-5860-45a4-a065-4bbf8cc38519 |
|
2018-08-11 03:02:50,639 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - WorkflowManagerActor Starting workflow UUID(a2d48a30-a2d8-466f-9b5c-524998b51391) |
|
2018-08-11 03:02:50,639 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - WorkflowManagerActor Successfully started WorkflowActor-a2d48a30-a2d8-466f-9b5c-524998b51391 |
|
2018-08-11 03:02:50,639 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - Retrieved 3 workflows from the WorkflowStoreActor |
|
2018-08-11 03:02:50,646 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - MaterializeWorkflowDescriptorActor [UUID(8f4fec30)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:02:50,647 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(a2d48a30)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:02:50,650 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - MaterializeWorkflowDescriptorActor [UUID(b70ad92d)]: Parsing workflow as WDL 1.0 |
|
2018-08-11 03:02:50,668 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(a2d48a30)]: Call-to-Backend assignments: I_hope_nobody_names_workflows_like_this_as_it_seems_very_unnecessary_.my_task_aliased -> Papi |
|
2018-08-11 03:02:50,770 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - MaterializeWorkflowDescriptorActor [UUID(8f4fec30)]: Call-to-Backend assignments: prefix.pfx -> Papi |
|
2018-08-11 03:02:50,836 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - MaterializeWorkflowDescriptorActor [UUID(b70ad92d)]: Call-to-Backend assignments: draft3_optional_input_from_scatter.input_default_not_used -> Papi |
|
2018-08-11 03:02:50,920 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - 120f534f-d36e-4739-a06f-856a74422cc1-SubWorkflowActor-SubWorkflow-oo:-1:1 [UUID(120f534f)]: Starting subhello.hello |
|
2018-08-11 03:02:50,922 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - 6a39077e-7572-451a-9fe8-4725adf95c04-SubWorkflowActor-SubWorkflow-noib:-1:1 [UUID(6a39077e)]: Starting subhello.hello |
|
2018-08-11 03:02:50,947 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - 30ebe86b-0413-4d85-a660-f93985f57a9f-SubWorkflowActor-SubWorkflow-nob:-1:1 [UUID(30ebe86b)]: Starting subhello.hello |
|
2018-08-11 03:02:51,080 cromwell-system-akka.dispatchers.engine-dispatcher-30 ERROR - WorkflowManagerActor Workflow bcfc89df-a09b-4366-b3fd-9ca3ad53437a failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out |
|
at java.net.PlainSocketImpl.socketConnect(Native Method) |
|
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350) |
|
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206) |
|
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188) |
|
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392) |
|
at java.net.Socket.connect(Socket.java:589) |
|
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673) |
|
at sun.net.NetworkClient.doConnect(NetworkClient.java:175) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558) |
|
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264) |
|
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291) |
|
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250) |
|
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469) |
|
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101) |
|
at scala.Option.map(Option.scala:146) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121) |
|
at scala.util.Success.$anonfun$map$1(Try.scala:251) |
|
at scala.util.Success.map(Try.scala:209) |
|
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288) |
|
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29) |
|
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
|
|
2018-08-11 03:02:51,081 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor WorkflowActor-bcfc89df-a09b-4366-b3fd-9ca3ad53437a is in a terminal state: WorkflowFailedState |
|
2018-08-11 03:02:51,112 cromwell-system-akka.dispatchers.engine-dispatcher-30 ERROR - WorkflowManagerActor Workflow 059afb47-b7a6-45d0-bf55-f1ce03def37b failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out |
|
at java.net.PlainSocketImpl.socketConnect(Native Method) |
|
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350) |
|
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206) |
|
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188) |
|
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392) |
|
at java.net.Socket.connect(Socket.java:589) |
|
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673) |
|
at sun.net.NetworkClient.doConnect(NetworkClient.java:175) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558) |
|
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264) |
|
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291) |
|
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250) |
|
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469) |
|
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101) |
|
at scala.Option.map(Option.scala:146) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121) |
|
at scala.util.Success.$anonfun$map$1(Try.scala:251) |
|
at scala.util.Success.map(Try.scala:209) |
|
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288) |
|
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29) |
|
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
|
|
2018-08-11 03:02:51,113 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor WorkflowActor-059afb47-b7a6-45d0-bf55-f1ce03def37b is in a terminal state: WorkflowFailedState |
|
2018-08-11 03:02:51,113 cromwell-system-akka.dispatchers.backend-dispatcher-63 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(989e9d1f)read_file_limits.readFloat:NA:1]: `dd if=/dev/zero of=file_256k bs=256k count=1` |
|
2018-08-11 03:02:51,126 cromwell-system-akka.dispatchers.engine-dispatcher-34 ERROR - WorkflowManagerActor Workflow 80bcbca9-d880-4e50-ad3c-a8353a8efe64 failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out |
|
at java.net.PlainSocketImpl.socketConnect(Native Method) |
|
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350) |
|
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206) |
|
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188) |
|
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392) |
|
at java.net.Socket.connect(Socket.java:589) |
|
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673) |
|
at sun.net.NetworkClient.doConnect(NetworkClient.java:175) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558) |
|
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264) |
|
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291) |
|
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250) |
|
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469) |
|
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101) |
|
at scala.Option.map(Option.scala:146) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121) |
|
at scala.util.Success.$anonfun$map$1(Try.scala:251) |
|
at scala.util.Success.map(Try.scala:209) |
|
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288) |
|
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29) |
|
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
|
|
2018-08-11 03:02:51,126 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowManagerActor WorkflowActor-80bcbca9-d880-4e50-ad3c-a8353a8efe64 is in a terminal state: WorkflowFailedState |
|
2018-08-11 03:02:51,132 cromwell-system-akka.dispatchers.api-dispatcher-67 INFO - Unspecified type (Unspecified version) workflow 4c8e6262-97b0-44ce-9c03-88729f6d29b8 submitted |
|
2018-08-11 03:02:51,212 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowExecutionActor-5c60a694-7d57-4f86-ba3a-c22de94c935a [UUID(5c60a694)]: Starting machineTypeTool |
|
2018-08-11 03:02:51,282 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowExecutionActor-f8901107-48c1-427d-a503-d1b399a14673 [UUID(f8901107)]: Starting nested_lookups.throwaway2, nested_lookups.throwaway1 |
|
2018-08-11 03:02:51,283 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowExecutionActor-f8901107-48c1-427d-a503-d1b399a14673 [UUID(f8901107)]: Condition met: 'true'. Running conditional section |
|
2018-08-11 03:02:51,285 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowExecutionActor-f8901107-48c1-427d-a503-d1b399a14673 [UUID(f8901107)]: Condition met: 'true'. Running conditional section |
|
2018-08-11 03:02:51,286 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowExecutionActor-f8901107-48c1-427d-a503-d1b399a14673 [UUID(f8901107)]: Condition met: 'true'. Running conditional section |
|
2018-08-11 03:02:51,318 cromwell-system-akka.dispatchers.backend-dispatcher-63 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(4fe7437b)arrays_scatters_ifs.printInt:1:1]: `echo "1" > out.txt` |
|
2018-08-11 03:02:51,371 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowExecutionActor-da0a3242-9e47-4ffc-9b50-da4fe1997414 [UUID(da0a3242)]: Starting globbingindex.glob_task |
|
2018-08-11 03:02:51,419 cromwell-system-akka.dispatchers.api-dispatcher-58 INFO - Unspecified type (Unspecified version) workflow e7ee3d80-1371-462a-b9e4-7f47b3d3e72a submitted |
|
2018-08-11 03:02:51,721 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowExecutionActor-2fb6debd-2af2-4054-8b2f-868061c6c4e9 [UUID(2fb6debd)]: Workflow draft3_infer_version complete. Final Outputs: |
|
{ |
|
"draft3_infer_version.j": 660 |
|
} |
|
2018-08-11 03:02:51,753 cromwell-system-akka.dispatchers.api-dispatcher-64 INFO - Unspecified type (Unspecified version) workflow ba32f0ef-94ca-47fa-8da2-cfc2b5b36b01 submitted |
|
2018-08-11 03:02:51,759 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - WorkflowExecutionActor-4506a204-53c2-42a1-95d8-0ca23ad2a44e [UUID(4506a204)]: Workflow nested_struct complete. Final Outputs: |
|
{ |
|
"nested_struct.f": 5.5 |
|
} |
|
2018-08-11 03:02:52,003 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowExecutionActor-86bc228d-cda7-4609-b7fb-c4c4dae25137 [UUID(86bc228d)]: Condition NOT met: 'false'. Bypassing conditional section |
|
2018-08-11 03:02:52,003 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowExecutionActor-86bc228d-cda7-4609-b7fb-c4c4dae25137 [UUID(86bc228d)]: Condition met: 'true'. Running conditional section |
|
2018-08-11 03:02:52,025 cromwell-system-akka.dispatchers.api-dispatcher-64 INFO - Unspecified type (Unspecified version) workflow 20e4ae72-496d-4b38-be24-845cea7aadad submitted |
|
2018-08-11 03:02:52,072 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowExecutionActor-8efa7bd2-6c41-40fc-bdf8-d8a1929c99c0 [UUID(8efa7bd2)]: Starting badExample.bad |
|
2018-08-11 03:02:52,195 cromwell-system-akka.dispatchers.api-dispatcher-64 INFO - Unspecified type (Unspecified version) workflow af95ce90-ac96-4235-8254-98dd5f53878d submitted |
|
2018-08-11 03:02:52,427 cromwell-system-akka.dispatchers.api-dispatcher-64 INFO - Unspecified type (Unspecified version) workflow 3be432f1-c4f3-4e1e-ad60-dbf04d97e1bf submitted |
|
2018-08-11 03:02:52,540 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowExecutionActor-9a862b7e-13d0-4b63-a747-4c17104b4918 [UUID(9a862b7e)]: Starting declarations_as_nodes.t1 |
|
2018-08-11 03:02:52,627 cromwell-system-akka.dispatchers.api-dispatcher-66 INFO - Unspecified type (Unspecified version) workflow 7a9803d4-b4f5-45f9-aad9-3193335b7129 submitted |
|
2018-08-11 03:02:52,793 cromwell-system-akka.dispatchers.api-dispatcher-64 INFO - Unspecified type (Unspecified version) workflow 171b1387-b7a4-416d-aa63-86829d8039dd submitted |
|
2018-08-11 03:02:52,835 cromwell-system-akka.dispatchers.backend-dispatcher-43 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(989e9d1f)read_file_limits.readInt:NA:1]: `dd if=/dev/zero of=file_256k bs=256k count=1` |
|
2018-08-11 03:02:52,949 cromwell-system-akka.dispatchers.api-dispatcher-66 INFO - WDL (1.0) workflow 7c349a44-4eca-448d-9a02-114da3e0cd45 submitted |
|
2018-08-11 03:02:53,100 cromwell-system-akka.dispatchers.api-dispatcher-64 INFO - Unspecified type (Unspecified version) workflow cd413a7b-1835-4a8f-87c7-7df351a5c649 submitted |
|
2018-08-11 03:02:53,235 cromwell-system-akka.dispatchers.api-dispatcher-66 INFO - Unspecified type (Unspecified version) workflow b89dd9bd-74c6-4f6e-8487-844be5fb23d9 submitted |
|
2018-08-11 03:02:53,322 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowExecutionActor-f8901107-48c1-427d-a503-d1b399a14673 [UUID(f8901107)]: Condition met: 'true'. Running conditional section |
|
2018-08-11 03:02:53,322 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowExecutionActor-f8901107-48c1-427d-a503-d1b399a14673 [UUID(f8901107)]: Condition NOT met: 'false'. Bypassing conditional section |
|
2018-08-11 03:02:53,322 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowExecutionActor-f8901107-48c1-427d-a503-d1b399a14673 [UUID(f8901107)]: Condition met: 'true'. Running conditional section |
|
[33m- should successfully run final_call_logs_dir_tes !!! IGNORED !!![0m |
|
2018-08-11 03:02:53,951 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowExecutionActor-5e287608-d4be-4014-b70e-625ea2002073 [UUID(5e287608)]: Starting forkjoin.mkFile |
|
2018-08-11 03:02:54,342 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - WorkflowExecutionActor-f8901107-48c1-427d-a503-d1b399a14673 [UUID(f8901107)]: Starting nested_lookups.needs_wf_input |
|
[33m- should successfully run monitoring_log_papiv1 !!! IGNORED !!![0m |
|
2018-08-11 03:02:54,831 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowExecutionActor-0bae37d3-2ac8-4d79-b78f-ce91108498d6 [UUID(0bae37d3)]: Condition NOT met: '((x % 2) == 0)'. Bypassing conditional section |
|
2018-08-11 03:02:54,831 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowExecutionActor-0bae37d3-2ac8-4d79-b78f-ce91108498d6 [UUID(0bae37d3)]: Condition met: '((x % 2) == 0)'. Running conditional section |
|
2018-08-11 03:02:55,062 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - WorkflowExecutionActor-86bc228d-cda7-4609-b7fb-c4c4dae25137 [UUID(86bc228d)]: Starting declarations_in_ifs.double_i |
|
2018-08-11 03:02:55,372 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowExecutionActor-f8901107-48c1-427d-a503-d1b399a14673 [UUID(f8901107)]: Starting nested_lookups.m1 |
|
[32m- should fail during execution chainfail (45 seconds, 834 milliseconds)[0m |
|
2018-08-11 03:02:55,782 cromwell-system-akka.dispatchers.api-dispatcher-64 INFO - Unspecified type (Unspecified version) workflow 9885fa07-3820-45d9-8d28-a2c9bcd351f6 submitted |
|
2018-08-11 03:02:56,515 cromwell-system-akka.dispatchers.api-dispatcher-68 INFO - Unspecified type (Unspecified version) workflow 6648fdb1-fdf1-4996-82c5-4b8ef24674a7 submitted |
|
[32m- should successfully run draft3_array_indexing (15 seconds, 114 milliseconds)[0m |
|
2018-08-11 03:02:56,859 WARN - Graceful shutdown took too much time, forcing the shutdown. |
|
2018-08-11 03:02:56,860 WARN - 0 tasks failed to execute before shutdown. |
|
2018-08-11 03:02:56,860 ERROR - Test 'successfully run wdl_function_locations' with workflow id '78f788f6-f7be-411b-b507-87d36e8c153b' failed on attempt 1 of 3 |
|
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded |
|
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181) |
|
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138) |
|
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304) |
|
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125) |
|
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70) |
|
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43) |
|
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44) |
|
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284) |
|
at scala.concurrent.Promise.complete(Promise.scala:49) |
|
at scala.concurrent.Promise.complete$(Promise.scala:48) |
|
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183) |
|
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
2018-08-11 03:02:56,873 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowExecutionActor-0bae37d3-2ac8-4d79-b78f-ce91108498d6 [UUID(0bae37d3)]: Starting draft3_optional_addition.call_me |
|
2018-08-11 03:02:56,878 cromwell-system-akka.dispatchers.api-dispatcher-64 INFO - Unspecified type (Unspecified version) workflow c9359ca2-3b35-46c3-9f8d-69f196f8c234 submitted |
|
2018-08-11 03:02:56,917 WARN - Initiated a temporary lockdown because of exception: {"error":"No JSON data was found"} |
|
2018-08-11 03:02:56,918 ERROR - An exception occurred while sending the event to Sentry. |
|
io.sentry.connection.ConnectionException: {"error":"No JSON data was found"} |
|
at io.sentry.connection.HttpConnection.doSend(HttpConnection.java:216) |
|
at io.sentry.connection.AbstractConnection.send(AbstractConnection.java:76) |
|
at io.sentry.connection.AsyncConnection$EventSubmitter.run(AsyncConnection.java:185) |
|
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) |
|
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) |
|
at java.lang.Thread.run(Thread.java:748) |
|
Caused by: java.net.SocketTimeoutException: connect timed out |
|
at java.net.PlainSocketImpl.socketConnect(Native Method) |
|
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350) |
|
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206) |
|
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188) |
|
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392) |
|
at java.net.Socket.connect(Socket.java:589) |
|
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673) |
|
at sun.net.NetworkClient.doConnect(NetworkClient.java:175) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558) |
|
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264) |
|
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177) |
|
at sun.net.www.protocol.https.HttpsURLConnectionImpl.connect(HttpsURLConnectionImpl.java:153) |
|
at io.sentry.connection.HttpConnection.doSend(HttpConnection.java:168) |
|
... 5 common frames omitted |
|
[33m- should fail during execution circular_dependencies !!! IGNORED !!![0m |
|
2018-08-11 03:02:58,153 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - 52ea3e89-114f-4aaa-880e-b5651badd13b-SubWorkflowActor-SubWorkflow-ScatterAt11_15:0:1 [UUID(52ea3e89)]: Workflow ScatterAt11_15 complete. Final Outputs: |
|
{ |
|
"j": [7, 8, 9] |
|
} |
|
2018-08-11 03:02:58,160 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - 28e53c49-037b-4ad9-a35f-da78fb4b199c-SubWorkflowActor-SubWorkflow-ScatterAt11_15:2:1 [UUID(28e53c49)]: Workflow ScatterAt11_15 complete. Final Outputs: |
|
{ |
|
"j": [11, 12, 13] |
|
} |
|
2018-08-11 03:02:58,186 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - 85a05be9-3bdd-4eeb-bf86-4c124160a79d-SubWorkflowActor-SubWorkflow-ScatterAt11_15:2:1 [UUID(85a05be9)]: Workflow ScatterAt11_15 complete. Final Outputs: |
|
{ |
|
"j": [13, 14, 15] |
|
} |
|
2018-08-11 03:02:58,186 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - 607e8d7d-6ab4-4ce9-9c6c-028121529ad3-SubWorkflowActor-SubWorkflow-ScatterAt11_15:1:1 [UUID(607e8d7d)]: Workflow ScatterAt11_15 complete. Final Outputs: |
|
{ |
|
"j": [7, 8, 9] |
|
} |
|
2018-08-11 03:02:58,186 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - 038d23ba-fc10-4df7-9da0-6dbdcd3e15ab-SubWorkflowActor-SubWorkflow-ScatterAt11_15:1:1 [UUID(038d23ba)]: Workflow ScatterAt11_15 complete. Final Outputs: |
|
{ |
|
"j": [11, 12, 13] |
|
} |
|
2018-08-11 03:02:58,186 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - 86325a08-3e5b-49a9-9a6c-e1726b7cd517-SubWorkflowActor-SubWorkflow-ScatterAt11_15:1:1 [UUID(86325a08)]: Workflow ScatterAt11_15 complete. Final Outputs: |
|
{ |
|
"j": [9, 10, 11] |
|
} |
|
2018-08-11 03:02:58,186 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - 89842ecc-fd4b-4686-9d76-cc023be4481d-SubWorkflowActor-SubWorkflow-ScatterAt11_15:0:1 [UUID(89842ecc)]: Workflow ScatterAt11_15 complete. Final Outputs: |
|
{ |
|
"j": [9, 10, 11] |
|
} |
|
2018-08-11 03:02:58,186 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - 2e0649ca-d1b6-48e3-b9d9-81e2d3430eab-SubWorkflowActor-SubWorkflow-ScatterAt11_15:0:1 [UUID(2e0649ca)]: Workflow ScatterAt11_15 complete. Final Outputs: |
|
{ |
|
"j": [5, 6, 7] |
|
} |
|
2018-08-11 03:02:58,186 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - 8f10796f-b7a4-4e8f-973f-ea0368a1d355-SubWorkflowActor-SubWorkflow-ScatterAt11_15:2:1 [UUID(8f10796f)]: Workflow ScatterAt11_15 complete. Final Outputs: |
|
{ |
|
"j": [9, 10, 11] |
|
} |
|
[33m- should successfully run refresh_token !!! IGNORED !!![0m |
|
[33m- should successfully run cwl_resources_papiv1 !!! IGNORED !!![0m |
|
2018-08-11 03:02:58,911 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowExecutionActor-0bae37d3-2ac8-4d79-b78f-ce91108498d6 [UUID(0bae37d3)]: Starting draft3_optional_addition.call_me |
|
2018-08-11 03:02:59,221 cromwell-system-akka.dispatchers.backend-dispatcher-38 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(989e9d1f)read_file_limits.readObject:NA:1]: `dd if=/dev/zero of=file_256k bs=256k count=1` |
|
[33m- should successfully run workflow_type_and_version_cwl !!! IGNORED !!![0m |
|
2018-08-11 03:02:59,883 WARN - Graceful shutdown took too much time, forcing the shutdown. |
|
2018-08-11 03:02:59,883 WARN - 0 tasks failed to execute before shutdown. |
|
2018-08-11 03:02:59,883 ERROR - Test 'successfully run non_root_default_user' with workflow id '80bcbca9-d880-4e50-ad3c-a8353a8efe64' failed on attempt 1 of 3 |
|
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded |
|
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181) |
|
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138) |
|
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304) |
|
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125) |
|
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70) |
|
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43) |
|
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44) |
|
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284) |
|
at scala.concurrent.Promise.complete(Promise.scala:49) |
|
at scala.concurrent.Promise.complete$(Promise.scala:48) |
|
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183) |
|
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
2018-08-11 03:02:59,929 cromwell-system-akka.dispatchers.api-dispatcher-66 INFO - Unspecified type (Unspecified version) workflow 0e656752-aaad-4e45-9121-5b4c13ad7568 submitted |
|
[33m- should successfully run input_from_bucket_with_requester_pays !!! IGNORED !!![0m |
|
2018-08-11 03:03:00,898 WARN - Initiated a temporary lockdown because of exception: An exception occurred while submitting the event to the Sentry server. |
|
2018-08-11 03:03:00,898 ERROR - An exception occurred while sending the event to Sentry. |
|
io.sentry.connection.ConnectionException: An exception occurred while submitting the event to the Sentry server. |
|
at io.sentry.connection.HttpConnection.doSend(HttpConnection.java:216) |
|
at io.sentry.connection.AbstractConnection.send(AbstractConnection.java:76) |
|
at io.sentry.connection.AsyncConnection$EventSubmitter.run(AsyncConnection.java:185) |
|
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) |
|
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) |
|
at java.lang.Thread.run(Thread.java:748) |
|
Caused by: java.net.SocketTimeoutException: connect timed out |
|
at java.net.PlainSocketImpl.socketConnect(Native Method) |
|
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350) |
|
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206) |
|
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188) |
|
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392) |
|
at java.net.Socket.connect(Socket.java:589) |
|
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673) |
|
at sun.net.NetworkClient.doConnect(NetworkClient.java:175) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558) |
|
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264) |
|
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177) |
|
at sun.net.www.protocol.https.HttpsURLConnectionImpl.connect(HttpsURLConnectionImpl.java:153) |
|
at io.sentry.connection.HttpConnection.doSend(HttpConnection.java:168) |
|
... 5 common frames omitted |
|
2018-08-11 03:03:02,608 ERROR - Test 'successfully run draft3_optional_declarations' with workflow id '059afb47-b7a6-45d0-bf55-f1ce03def37b' failed on attempt 1 of 3 |
|
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded |
|
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181) |
|
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138) |
|
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304) |
|
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125) |
|
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70) |
|
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43) |
|
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44) |
|
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284) |
|
at scala.concurrent.Promise.complete(Promise.scala:49) |
|
at scala.concurrent.Promise.complete$(Promise.scala:48) |
|
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183) |
|
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
2018-08-11 03:03:02,643 cromwell-system-akka.dispatchers.api-dispatcher-58 INFO - WDL (1.0) workflow 12075b5a-0b94-4d41-9c8d-a7296ca9c123 submitted |
|
2018-08-11 03:03:04,285 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - 54a73c35-fde6-46ee-ba2a-1a6e61759a26-SubWorkflowActor-SubWorkflow-ScatterAt14_15:0:1 [UUID(54a73c35)]: Workflow ScatterAt14_15 complete. Final Outputs: |
|
{ |
|
"k": [62, 63, 64] |
|
} |
|
2018-08-11 03:03:04,285 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - d325858e-f656-486f-a2f2-4c0e0cb75c14-SubWorkflowActor-SubWorkflow-ScatterAt14_15:2:1 [UUID(d325858e)]: Workflow ScatterAt14_15 complete. Final Outputs: |
|
{ |
|
"k": [66, 67, 68] |
|
} |
|
2018-08-11 03:03:04,290 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - 5871a901-f2a3-4563-bd73-ceebfecc97f7-SubWorkflowActor-SubWorkflow-ScatterAt14_15:1:1 [UUID(5871a901)]: Workflow ScatterAt14_15 complete. Final Outputs: |
|
{ |
|
"k": [66, 67, 68] |
|
} |
|
2018-08-11 03:03:04,291 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - ccf00a0a-7acc-4ee2-bb93-cd9141e756c3-SubWorkflowActor-SubWorkflow-ScatterAt14_15:0:1 [UUID(ccf00a0a)]: Workflow ScatterAt14_15 complete. Final Outputs: |
|
{ |
|
"k": [64, 65, 66] |
|
} |
|
2018-08-11 03:03:04,291 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - 28aa9308-2afa-4118-bb40-5baaac1ce7ef-SubWorkflowActor-SubWorkflow-ScatterAt14_15:0:1 [UUID(28aa9308)]: Workflow ScatterAt14_15 complete. Final Outputs: |
|
{ |
|
"k": [60, 61, 62] |
|
} |
|
2018-08-11 03:03:04,292 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - 75bd06c3-09c6-4399-b886-d8e75ba485ba-SubWorkflowActor-SubWorkflow-ScatterAt14_15:2:1 [UUID(75bd06c3)]: Workflow ScatterAt14_15 complete. Final Outputs: |
|
{ |
|
"k": [68, 69, 70] |
|
} |
|
2018-08-11 03:03:04,294 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - b0aee6d8-8ad7-4ac1-8499-09f4a7fdc8f2-SubWorkflowActor-SubWorkflow-ScatterAt14_15:2:1 [UUID(b0aee6d8)]: Workflow ScatterAt14_15 complete. Final Outputs: |
|
{ |
|
"k": [64, 65, 66] |
|
} |
|
2018-08-11 03:03:04,300 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - e4f7f582-e138-44fa-8264-e79b1357fcfc-SubWorkflowActor-SubWorkflow-ScatterAt14_15:1:1 [UUID(e4f7f582)]: Workflow ScatterAt14_15 complete. Final Outputs: |
|
{ |
|
"k": [62, 63, 64] |
|
} |
|
2018-08-11 03:03:04,304 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - e46fd8cc-9399-4391-8c24-a94a4ae18bb3-SubWorkflowActor-SubWorkflow-ScatterAt14_15:1:1 [UUID(e46fd8cc)]: Workflow ScatterAt14_15 complete. Final Outputs: |
|
{ |
|
"k": [64, 65, 66] |
|
} |
|
2018-08-11 03:03:04,822 cromwell-system-akka.dispatchers.api-dispatcher-67 INFO - WDL (1.0) workflow 03623b51-49d1-4dd1-a156-75c8afdb3ba3 submitted |
|
2018-08-11 03:03:05,631 cromwell-system-akka.dispatchers.backend-dispatcher-42 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(ec4559df)docker_hash_gcr.gcr:NA:1]: `echo "hello"` |
|
2018-08-11 03:03:05,636 cromwell-system-akka.dispatchers.backend-dispatcher-42 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(1073fc07)scattergather.prepare:NA:1]: `python3 -c "print('one\ntwo\nthree\nfour')"` |
|
Aug 11, 2018 3:03:06 AM com.google.api.client.http.HttpRequest execute |
|
WARNING: exception thrown while executing request |
|
java.net.SocketTimeoutException: connect timed out |
|
at java.net.PlainSocketImpl.socketConnect(Native Method) |
|
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350) |
|
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206) |
|
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188) |
|
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392) |
|
at java.net.Socket.connect(Socket.java:589) |
|
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673) |
|
at sun.net.NetworkClient.doConnect(NetworkClient.java:175) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558) |
|
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264) |
|
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291) |
|
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250) |
|
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981) |
|
at com.google.auth.oauth2.ServiceAccountCredentials.refreshAccessToken(ServiceAccountCredentials.java:378) |
|
at com.google.auth.oauth2.OAuth2Credentials.refresh(OAuth2Credentials.java:160) |
|
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode.$anonfun$credentialValidation$1(GoogleAuthMode.scala:112) |
|
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode.$anonfun$credentialValidation$1$adapted(GoogleAuthMode.scala:112) |
|
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode.$anonfun$validateCredential$1(GoogleAuthMode.scala:115) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.util.Try$.apply(Try.scala:209) |
|
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode.validateCredential(GoogleAuthMode.scala:115) |
|
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode.validateCredential$(GoogleAuthMode.scala:114) |
|
at cromwell.cloudsupport.gcp.auth.ServiceAccountMode.validateCredential(GoogleAuthMode.scala:150) |
|
at cromwell.cloudsupport.gcp.auth.ServiceAccountMode._credential$lzycompute(GoogleAuthMode.scala:169) |
|
at cromwell.cloudsupport.gcp.auth.ServiceAccountMode._credential(GoogleAuthMode.scala:158) |
|
at cromwell.cloudsupport.gcp.auth.ServiceAccountMode.credential(GoogleAuthMode.scala:172) |
|
at cromwell.filesystems.gcs.GoogleUtil$EnhancedGoogleAuthMode$.credential$1(GoogleUtil.scala:33) |
|
at cromwell.filesystems.gcs.GoogleUtil$EnhancedGoogleAuthMode$.$anonfun$retryCredential$4(GoogleUtil.scala:49) |
|
at scala.concurrent.Future$.$anonfun$apply$1(Future.scala:654) |
|
at scala.util.Success.$anonfun$map$1(Try.scala:251) |
|
at scala.util.Success.map(Try.scala:209) |
|
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288) |
|
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29) |
|
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
|
|
2018-08-11 03:03:06,269 cromwell-system-akka.dispatchers.engine-dispatcher-32 ERROR - WorkflowManagerActor Workflow 18d037d0-63d7-4ff3-a7c1-4dbdc20ce058 failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out |
|
at java.net.PlainSocketImpl.socketConnect(Native Method) |
|
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350) |
|
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206) |
|
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188) |
|
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392) |
|
at java.net.Socket.connect(Socket.java:589) |
|
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673) |
|
at sun.net.NetworkClient.doConnect(NetworkClient.java:175) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558) |
|
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264) |
|
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291) |
|
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250) |
|
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981) |
|
at com.google.api.client.auth.oauth2.TokenRequest.executeUnparsed(TokenRequest.java:283) |
|
at com.google.api.client.auth.oauth2.TokenRequest.execute(TokenRequest.java:307) |
|
at com.google.api.client.googleapis.auth.oauth2.GoogleCredential.executeRefreshToken(GoogleCredential.java:394) |
|
at com.google.api.client.auth.oauth2.Credential.refreshToken(Credential.java:489) |
|
at com.google.api.client.auth.oauth2.Credential.intercept(Credential.java:217) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:868) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469) |
|
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101) |
|
at scala.Option.map(Option.scala:146) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121) |
|
at scala.util.Success.$anonfun$map$1(Try.scala:251) |
|
at scala.util.Success.map(Try.scala:209) |
|
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288) |
|
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29) |
|
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
|
|
2018-08-11 03:03:06,270 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - WorkflowManagerActor WorkflowActor-18d037d0-63d7-4ff3-a7c1-4dbdc20ce058 is in a terminal state: WorkflowFailedState |
|
2018-08-11 03:03:06,289 cromwell-system-akka.dispatchers.backend-dispatcher-37 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(989e9d1f)read_file_limits.readObjects:NA:1]: `dd if=/dev/zero of=file_256k bs=256k count=1` |
|
2018-08-11 03:03:06,305 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - 5ec5953e-6a4a-4f16-8707-50194d466197-SubWorkflowActor-SubWorkflow-ScatterAt9_13:2:1 [UUID(5ec5953e)]: Workflow ScatterAt9_13 complete. Final Outputs: |
|
{ |
|
"k": [[64, 65, 66], [66, 67, 68], [68, 69, 70]], |
|
"x": [4, 5, 6], |
|
"j": [[9, 10, 11], [11, 12, 13], [13, 14, 15]] |
|
} |
|
2018-08-11 03:03:06,322 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - 542b8489-37bb-45ff-aa01-331594fd3218-SubWorkflowActor-SubWorkflow-ScatterAt9_13:0:1 [UUID(542b8489)]: Workflow ScatterAt9_13 complete. Final Outputs: |
|
{ |
|
"x": [2, 3, 4], |
|
"j": [[5, 6, 7], [7, 8, 9], [9, 10, 11]], |
|
"k": [[60, 61, 62], [62, 63, 64], [64, 65, 66]] |
|
} |
|
2018-08-11 03:03:06,324 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - 356b1bc7-9dba-40b4-bd4a-7c3f8780d924-SubWorkflowActor-SubWorkflow-ScatterAt9_13:1:1 [UUID(356b1bc7)]: Workflow ScatterAt9_13 complete. Final Outputs: |
|
{ |
|
"x": [3, 4, 5], |
|
"j": [[7, 8, 9], [9, 10, 11], [11, 12, 13]], |
|
"k": [[62, 63, 64], [64, 65, 66], [66, 67, 68]] |
|
} |
|
[32m- should successfully run draft3_struct_output (15 seconds, 128 milliseconds)[0m |
|
2018-08-11 03:03:07,273 cromwell-system-akka.dispatchers.backend-dispatcher-41 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(989e9d1f)read_file_limits.readMap:NA:1]: `dd if=/dev/zero of=file_256k bs=256k count=1` |
|
2018-08-11 03:03:07,356 cromwell-system-akka.dispatchers.api-dispatcher-66 INFO - CWL (v1.0) workflow f2920645-5e3b-4310-825c-50f1225cf9b7 submitted |
|
…2018-08-11 03:03:09,344 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowExecutionActor-5f61c4de-3e98-4c84-92e2-559be38bc189 [UUID(5f61c4de)]: Workflow nested_scatter complete. Final Outputs: |
|
{ |
|
"nested_scatter.strings_in_if_in_scatter": [null, "hello 2", "hello 3"], |
|
"nested_scatter.ks": [[[60, 61, 62], [62, 63, 64], [64, 65, 66]], [[62, 63, 64], [64, 65, 66], [66, 67, 68]], [[64, 65, 66], [66, 67, 68], [68, 69, 70]]] |
|
} |
|
Metadata mismatch for 18d037d0-63d7-4ff3-a7c1-4dbdc20ce058 - retrying |
|
Metadata mismatch for 18d037d0-63d7-4ff3-a7c1-4dbdc20ce058 - retrying |
|
2018-08-11 03:03:13,003 cromwell-system-akka.dispatchers.backend-dispatcher-39 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(989e9d1f)read_file_limits.readTsv:NA:1]: `dd if=/dev/zero of=file_256k bs=256k count=1` |
|
2018-08-11 03:03:13,013 cromwell-system-akka.dispatchers.backend-dispatcher-70 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(989e9d1f)read_file_limits.readLines:NA:1]: `dd if=/dev/zero of=file_256k bs=256k count=1` |
|
2018-08-11 03:03:13,016 cromwell-system-akka.dispatchers.backend-dispatcher-71 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(989e9d1f)read_file_limits.readJson:NA:1]: `dd if=/dev/zero of=file_256k bs=256k count=1` |
|
2018-08-11 03:03:13,035 cromwell-system-akka.dispatchers.engine-dispatcher-30 ERROR - WorkflowManagerActor Workflow 78e47c58-72a5-4b86-94ac-c9cb17b39ae3 failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out |
|
at java.net.PlainSocketImpl.socketConnect(Native Method) |
|
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350) |
|
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206) |
|
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188) |
|
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392) |
|
at java.net.Socket.connect(Socket.java:589) |
|
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673) |
|
at sun.net.NetworkClient.doConnect(NetworkClient.java:175) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558) |
|
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264) |
|
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291) |
|
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250) |
|
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469) |
|
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101) |
|
at scala.Option.map(Option.scala:146) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121) |
|
at scala.util.Success.$anonfun$map$1(Try.scala:251) |
|
at scala.util.Success.map(Try.scala:209) |
|
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288) |
|
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29) |
|
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
|
|
2018-08-11 03:03:13,035 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor WorkflowActor-78e47c58-72a5-4b86-94ac-c9cb17b39ae3 is in a terminal state: WorkflowFailedState |
|
2018-08-11 03:03:13,053 cromwell-system-akka.dispatchers.backend-dispatcher-72 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(8610dbc7)wf_hello.hello:NA:1]: `echo "Hello " > test.out |
|
echo "Hello " > array.out |
|
echo "Hello " > map.out |
|
echo "Hello " > left.out |
|
echo "Hello " > right.out` |
|
2018-08-11 03:03:13,055 cromwell-system-akka.dispatchers.engine-dispatcher-30 ERROR - WorkflowManagerActor Workflow 4e18e509-c682-4276-9543-e1ea9f7a58dc failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out |
|
at java.net.PlainSocketImpl.socketConnect(Native Method) |
|
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350) |
|
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206) |
|
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188) |
|
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392) |
|
at java.net.Socket.connect(Socket.java:589) |
|
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673) |
|
at sun.net.NetworkClient.doConnect(NetworkClient.java:175) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558) |
|
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264) |
|
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291) |
|
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250) |
|
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981) |
|
at com.google.api.client.auth.oauth2.TokenRequest.executeUnparsed(TokenRequest.java:283) |
|
at com.google.api.client.auth.oauth2.TokenRequest.execute(TokenRequest.java:307) |
|
at com.google.api.client.googleapis.auth.oauth2.GoogleCredential.executeRefreshToken(GoogleCredential.java:394) |
|
at com.google.api.client.auth.oauth2.Credential.refreshToken(Credential.java:489) |
|
at com.google.api.client.auth.oauth2.Credential.intercept(Credential.java:217) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:868) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469) |
|
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101) |
|
at scala.Option.map(Option.scala:146) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121) |
|
at scala.util.Success.$anonfun$map$1(Try.scala:251) |
|
at scala.util.Success.map(Try.scala:209) |
|
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288) |
|
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29) |
|
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
|
|
2018-08-11 03:03:13,058 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor WorkflowActor-4e18e509-c682-4276-9543-e1ea9f7a58dc is in a terminal state: WorkflowFailedState |
|
2018-08-11 03:03:13,139 cromwell-system-akka.dispatchers.backend-dispatcher-72 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(4fe7437b)arrays_scatters_ifs.printInt:0:1]: `echo "0" > out.txt` |
|
2018-08-11 03:03:13,197 cromwell-system-akka.dispatchers.backend-dispatcher-73 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(3605344c)requester_pays_localization.localize:NA:1]: `cat "/cromwell_root/cromwell_bucket_with_requester_pays/lorem ipsum.txt" > out.txt` |
|
2018-08-11 03:03:13,225 cromwell-system-akka.dispatchers.backend-dispatcher-74 WARN - Local [UUID(8afdcac0)]: Key/s [backend] is/are not supported by backend. Unsupported attributes will not be part of job executions. |
|
2018-08-11 03:03:13,912 cromwell-system-akka.dispatchers.engine-dispatcher-33 ERROR - WorkflowManagerActor Workflow 80b836dc-2a63-49dd-86ee-b065c6e08cf0 failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out |
|
at java.net.PlainSocketImpl.socketConnect(Native Method) |
|
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350) |
|
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206) |
|
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188) |
|
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392) |
|
at java.net.Socket.connect(Socket.java:589) |
|
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673) |
|
at sun.net.NetworkClient.doConnect(NetworkClient.java:175) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558) |
|
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264) |
|
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291) |
|
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250) |
|
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981) |
|
at com.google.api.client.auth.oauth2.TokenRequest.executeUnparsed(TokenRequest.java:283) |
|
at com.google.api.client.auth.oauth2.TokenRequest.execute(TokenRequest.java:307) |
|
at com.google.api.client.googleapis.auth.oauth2.GoogleCredential.executeRefreshToken(GoogleCredential.java:394) |
|
at com.google.api.client.auth.oauth2.Credential.refreshToken(Credential.java:489) |
|
at com.google.api.client.auth.oauth2.Credential.intercept(Credential.java:217) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:868) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469) |
|
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101) |
|
at scala.Option.map(Option.scala:146) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121) |
|
at scala.util.Success.$anonfun$map$1(Try.scala:251) |
|
at scala.util.Success.map(Try.scala:209) |
|
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288) |
|
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29) |
|
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
|
|
2018-08-11 03:03:13,916 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowManagerActor WorkflowActor-80b836dc-2a63-49dd-86ee-b065c6e08cf0 is in a terminal state: WorkflowFailedState |
|
2018-08-11 03:03:13,923 cromwell-system-akka.dispatchers.backend-dispatcher-74 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(23085617)simple_if.runMeTrue:NA:1]: `echo "done"` |
|
2018-08-11 03:03:13,943 cromwell-system-akka.dispatchers.engine-dispatcher-33 ERROR - WorkflowManagerActor Workflow 88a6fda1-fa5d-456b-8ebd-057a921d230e failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out |
|
at java.net.PlainSocketImpl.socketConnect(Native Method) |
|
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350) |
|
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206) |
|
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188) |
|
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392) |
|
at java.net.Socket.connect(Socket.java:589) |
|
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673) |
|
at sun.net.NetworkClient.doConnect(NetworkClient.java:175) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558) |
|
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264) |
|
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291) |
|
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250) |
|
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981) |
|
at com.google.api.client.auth.oauth2.TokenRequest.executeUnparsed(TokenRequest.java:283) |
|
at com.google.api.client.auth.oauth2.TokenRequest.execute(TokenRequest.java:307) |
|
at com.google.api.client.googleapis.auth.oauth2.GoogleCredential.executeRefreshToken(GoogleCredential.java:394) |
|
at com.google.api.client.auth.oauth2.Credential.refreshToken(Credential.java:489) |
|
at com.google.api.client.auth.oauth2.Credential.intercept(Credential.java:217) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:868) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469) |
|
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101) |
|
at scala.Option.map(Option.scala:146) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121) |
|
at scala.util.Success.$anonfun$map$1(Try.scala:251) |
|
at scala.util.Success.map(Try.scala:209) |
|
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288) |
|
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29) |
|
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
|
|
2018-08-11 03:03:13,944 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowManagerActor WorkflowActor-88a6fda1-fa5d-456b-8ebd-057a921d230e is in a terminal state: WorkflowFailedState |
|
2018-08-11 03:03:13,952 cromwell-system-akka.dispatchers.backend-dispatcher-75 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(989e9d1f)read_file_limits.readString:NA:1]: `dd if=/dev/zero of=file_256k bs=256k count=1` |
|
2018-08-11 03:03:13,979 cromwell-system-akka.dispatchers.backend-dispatcher-76 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(989e9d1f)read_file_limits.readBoolean:NA:1]: `dd if=/dev/zero of=file_256k bs=256k count=1` |
|
2018-08-11 03:03:14,197 cromwell-system-akka.dispatchers.backend-dispatcher-77 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(b60dbf01)draft3_nio_file.mk_more_files:NA:1]: `echo "f1" > f |
|
echo "h1" > h |
|
echo "x01" > x0 |
|
echo "x11" > x1 |
|
echo "y01" > y0 |
|
echo "y11" > y1` |
|
2018-08-11 03:03:14,237 cromwell-system-akka.dispatchers.engine-dispatcher-6 ERROR - WorkflowManagerActor Workflow 88801cb6-a7aa-44a3-94ac-55a8c5dc39aa failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out |
|
at java.net.PlainSocketImpl.socketConnect(Native Method) |
|
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350) |
|
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206) |
|
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188) |
|
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392) |
|
at java.net.Socket.connect(Socket.java:589) |
|
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673) |
|
at sun.net.NetworkClient.doConnect(NetworkClient.java:175) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558) |
|
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264) |
|
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291) |
|
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250) |
|
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469) |
|
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101) |
|
at scala.Option.map(Option.scala:146) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121) |
|
at scala.util.Success.$anonfun$map$1(Try.scala:251) |
|
at scala.util.Success.map(Try.scala:209) |
|
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288) |
|
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29) |
|
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
|
|
2018-08-11 03:03:14,238 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor WorkflowActor-88801cb6-a7aa-44a3-94ac-55a8c5dc39aa is in a terminal state: WorkflowFailedState |
|
2018-08-11 03:03:14,240 cromwell-system-akka.dispatchers.backend-dispatcher-77 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(b60dbf01)draft3_nio_file.mk_files:NA:1]: `echo "f0" > f |
|
echo "h0" > h |
|
echo "x00" > x0 |
|
echo "x10" > x1 |
|
echo "y00" > y0 |
|
echo "y10" > y1` |
|
2018-08-11 03:03:14,418 cromwell-system-akka.dispatchers.engine-dispatcher-30 ERROR - WorkflowManagerActor Workflow d3618ad6-432e-4dac-963e-541cb77de944 failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out |
|
at java.net.PlainSocketImpl.socketConnect(Native Method) |
|
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350) |
|
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206) |
|
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188) |
|
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392) |
|
at java.net.Socket.connect(Socket.java:589) |
|
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673) |
|
at sun.net.NetworkClient.doConnect(NetworkClient.java:175) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558) |
|
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264) |
|
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291) |
|
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250) |
|
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469) |
|
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101) |
|
at scala.Option.map(Option.scala:146) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121) |
|
at scala.util.Success.$anonfun$map$1(Try.scala:251) |
|
at scala.util.Success.map(Try.scala:209) |
|
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288) |
|
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29) |
|
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
|
|
2018-08-11 03:03:14,419 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor WorkflowActor-d3618ad6-432e-4dac-963e-541cb77de944 is in a terminal state: WorkflowFailedState |
|
2018-08-11 03:03:14,429 cromwell-system-akka.dispatchers.engine-dispatcher-32 ERROR - WorkflowManagerActor Workflow 1649355b-fec9-427b-b442-9f30b829b457 failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out |
|
at java.net.PlainSocketImpl.socketConnect(Native Method) |
|
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350) |
|
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206) |
|
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188) |
|
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392) |
|
at java.net.Socket.connect(Socket.java:589) |
|
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673) |
|
at sun.net.NetworkClient.doConnect(NetworkClient.java:175) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558) |
|
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264) |
|
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291) |
|
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250) |
|
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981) |
|
at com.google.api.client.auth.oauth2.TokenRequest.executeUnparsed(TokenRequest.java:283) |
|
at com.google.api.client.auth.oauth2.TokenRequest.execute(TokenRequest.java:307) |
|
at com.google.api.client.googleapis.auth.oauth2.GoogleCredential.executeRefreshToken(GoogleCredential.java:394) |
|
at com.google.api.client.auth.oauth2.Credential.refreshToken(Credential.java:489) |
|
at com.google.api.client.auth.oauth2.Credential.intercept(Credential.java:217) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:868) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469) |
|
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101) |
|
at scala.Option.map(Option.scala:146) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121) |
|
at scala.util.Success.$anonfun$map$1(Try.scala:251) |
|
at scala.util.Success.map(Try.scala:209) |
|
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288) |
|
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29) |
|
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
|
|
2018-08-11 03:03:14,429 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - WorkflowManagerActor WorkflowActor-1649355b-fec9-427b-b442-9f30b829b457 is in a terminal state: WorkflowFailedState |
|
2018-08-11 03:03:14,435 cromwell-system-akka.dispatchers.engine-dispatcher-6 ERROR - WorkflowManagerActor Workflow 5040d120-3eb9-4c03-af9c-1b950c866c55 failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out |
|
at java.net.PlainSocketImpl.socketConnect(Native Method) |
|
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350) |
|
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206) |
|
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188) |
|
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392) |
|
at java.net.Socket.connect(Socket.java:589) |
|
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673) |
|
at sun.net.NetworkClient.doConnect(NetworkClient.java:175) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558) |
|
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264) |
|
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291) |
|
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250) |
|
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981) |
|
at com.google.api.client.auth.oauth2.TokenRequest.executeUnparsed(TokenRequest.java:283) |
|
at com.google.api.client.auth.oauth2.TokenRequest.execute(TokenRequest.java:307) |
|
at com.google.api.client.googleapis.auth.oauth2.GoogleCredential.executeRefreshToken(GoogleCredential.java:394) |
|
at com.google.api.client.auth.oauth2.Credential.refreshToken(Credential.java:489) |
|
at com.google.api.client.auth.oauth2.Credential.intercept(Credential.java:217) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:868) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469) |
|
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101) |
|
at scala.Option.map(Option.scala:146) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121) |
|
at scala.util.Success.$anonfun$map$1(Try.scala:251) |
|
at scala.util.Success.map(Try.scala:209) |
|
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288) |
|
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29) |
|
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
|
|
2018-08-11 03:03:14,438 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor WorkflowActor-5040d120-3eb9-4c03-af9c-1b950c866c55 is in a terminal state: WorkflowFailedState |
|
2018-08-11 03:03:14,788 cromwell-system-akka.dispatchers.backend-dispatcher-78 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(819450a6)length.lens:NA:1]: job id: projects/broad-dsde-cromwell-dev/operations/2323117015046795106 |
|
2018-08-11 03:03:14,789 cromwell-system-akka.dispatchers.backend-dispatcher-78 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(6de9f48d)restart_while_failing.B:NA:1]: job id: projects/broad-dsde-cromwell-dev/operations/7749985327767873962 |
|
2018-08-11 03:03:14,789 cromwell-system-akka.dispatchers.backend-dispatcher-78 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(bfe074e7)draft3_read_file_limits.readObject:NA:1]: job id: projects/broad-dsde-cromwell-dev/operations/16366677853240197533 |
|
2018-08-11 03:03:14,789 cromwell-system-akka.dispatchers.backend-dispatcher-78 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(bfe074e7)draft3_read_file_limits.readObjects:NA:1]: job id: projects/broad-dsde-cromwell-dev/operations/17634617218353971958 |
|
2018-08-11 03:03:14,789 cromwell-system-akka.dispatchers.backend-dispatcher-78 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(bfe074e7)draft3_read_file_limits.readLines:NA:1]: job id: projects/broad-dsde-cromwell-dev/operations/6847339217058538290 |
|
2018-08-11 03:03:14,789 cromwell-system-akka.dispatchers.backend-dispatcher-78 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(6de9f48d)restart_while_failing.A:NA:1]: job id: projects/broad-dsde-cromwell-dev/operations/12792575911540457082 |
|
2018-08-11 03:03:14,790 cromwell-system-akka.dispatchers.backend-dispatcher-78 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(6de9f48d)restart_while_failing.sleep_exit:3:1]: job id: projects/broad-dsde-cromwell-dev/operations/7954629919722642460 |
|
2018-08-11 03:03:14,790 cromwell-system-akka.dispatchers.backend-dispatcher-78 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(bfe074e7)draft3_read_file_limits.readString:NA:1]: job id: projects/broad-dsde-cromwell-dev/operations/17500553026403664309 |
|
2018-08-11 03:03:14,790 cromwell-system-akka.dispatchers.backend-dispatcher-78 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(bfe074e7)draft3_read_file_limits.readMap:NA:1]: job id: projects/broad-dsde-cromwell-dev/operations/1715228930686435600 |
|
2018-08-11 03:03:14,790 cromwell-system-akka.dispatchers.backend-dispatcher-78 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(6de9f48d)restart_while_failing.sleep_exit:2:1]: job id: projects/broad-dsde-cromwell-dev/operations/6434396342822686685 |
|
2018-08-11 03:03:14,790 cromwell-system-akka.dispatchers.backend-dispatcher-78 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(bfe074e7)draft3_read_file_limits.readJson:NA:1]: job id: projects/broad-dsde-cromwell-dev/operations/16187183263758846125 |
|
2018-08-11 03:03:14,790 cromwell-system-akka.dispatchers.backend-dispatcher-78 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(bfe074e7)draft3_read_file_limits.readTsv:NA:1]: job id: projects/broad-dsde-cromwell-dev/operations/9470179827111088689 |
|
2018-08-11 03:03:14,791 cromwell-system-akka.dispatchers.backend-dispatcher-78 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(bfe074e7)draft3_read_file_limits.readBoolean:NA:1]: job id: projects/broad-dsde-cromwell-dev/operations/3247760554571008785 |
|
2018-08-11 03:03:14,791 cromwell-system-akka.dispatchers.backend-dispatcher-78 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(bfe074e7)draft3_read_file_limits.readFloat:NA:1]: job id: projects/broad-dsde-cromwell-dev/operations/9485286380334209562 |
|
2018-08-11 03:03:14,791 cromwell-system-akka.dispatchers.backend-dispatcher-78 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(6de9f48d)restart_while_failing.sleep_exit:4:1]: job id: projects/broad-dsde-cromwell-dev/operations/17136297073419861849 |
|
2018-08-11 03:03:14,791 cromwell-system-akka.dispatchers.backend-dispatcher-78 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(6de9f48d)restart_while_failing.sleep_exit:1:1]: job id: projects/broad-dsde-cromwell-dev/operations/1686947474927712373 |
|
2018-08-11 03:03:14,792 cromwell-system-akka.dispatchers.backend-dispatcher-78 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(6de9f48d)restart_while_failing.sleep_exit:0:1]: job id: projects/broad-dsde-cromwell-dev/operations/7185019787516367886 |
|
2018-08-11 03:03:14,792 cromwell-system-akka.dispatchers.backend-dispatcher-78 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(bfe074e7)draft3_read_file_limits.readInt:NA:1]: job id: projects/broad-dsde-cromwell-dev/operations/15824158814299951924 |
|
2018-08-11 03:03:14,830 cromwell-system-akka.dispatchers.backend-dispatcher-78 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(c09bd460)filearrayoutput.createFileArray:NA:1]: job id: projects/broad-dsde-cromwell-dev/operations/7661581386736703595 |
|
2018-08-11 03:03:14,831 cromwell-system-akka.dispatchers.backend-dispatcher-78 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(45af4273)ifs_in_scatters.init:NA:1]: job id: projects/broad-dsde-cromwell-dev/operations/13451082472147865103 |
|
2018-08-11 03:03:14,833 cromwell-system-akka.dispatchers.backend-dispatcher-78 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(45af4273)ifs_in_scatters.validate_int:1:1]: job id: projects/broad-dsde-cromwell-dev/operations/7122565360595063624 |
|
2018-08-11 03:03:14,833 cromwell-system-akka.dispatchers.backend-dispatcher-78 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(45af4273)ifs_in_scatters.validate_int:2:1]: job id: projects/broad-dsde-cromwell-dev/operations/17228939490472717699 |
|
Metadata mismatch for 18d037d0-63d7-4ff3-a7c1-4dbdc20ce058 - retrying |
|
2018-08-11 03:03:16,220 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowExecutionActor-29014d92-e9bf-4cf3-895e-7b6da6733b7f [UUID(29014d92)]: Starting multplesourcedarray.source2, multplesourcedarray.source1, multplesourcedarray.source6, multplesourcedarray.source3, multplesourcedarray.source7, multplesourcedarray.source4, multplesourcedarray.source5 |
|
[32m- should fail during execution invalid_runtime_attributes (26 seconds, 524 milliseconds)[0m |
|
Metadata mismatch for 18d037d0-63d7-4ff3-a7c1-4dbdc20ce058 - retrying |
|
Metadata mismatch for 18d037d0-63d7-4ff3-a7c1-4dbdc20ce058 - retrying |
|
2018-08-11 03:03:19,817 WARN - Graceful shutdown took too much time, forcing the shutdown. |
|
2018-08-11 03:03:19,818 WARN - 0 tasks failed to execute before shutdown. |
|
2018-08-11 03:03:19,818 ERROR - Test 'successfully run expression_lib_cwl' with workflow id '80b836dc-2a63-49dd-86ee-b065c6e08cf0' failed on attempt 1 of 3 |
|
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded |
|
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181) |
|
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138) |
|
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304) |
|
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125) |
|
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70) |
|
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43) |
|
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44) |
|
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284) |
|
at scala.concurrent.Promise.complete(Promise.scala:49) |
|
at scala.concurrent.Promise.complete$(Promise.scala:48) |
|
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183) |
|
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
2018-08-11 03:03:19,823 WARN - Graceful shutdown took too much time, forcing the shutdown. |
|
2018-08-11 03:03:19,825 WARN - 0 tasks failed to execute before shutdown. |
|
2018-08-11 03:03:19,826 ERROR - Test 'successfully run input_mirror' with workflow id '1649355b-fec9-427b-b442-9f30b829b457' failed on attempt 1 of 3 |
|
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded |
|
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181) |
|
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138) |
|
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304) |
|
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125) |
|
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70) |
|
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43) |
|
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44) |
|
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284) |
|
at scala.concurrent.Promise.complete(Promise.scala:49) |
|
at scala.concurrent.Promise.complete$(Promise.scala:48) |
|
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183) |
|
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
2018-08-11 03:03:19,853 cromwell-system-akka.dispatchers.api-dispatcher-67 INFO - Unspecified type (Unspecified version) workflow ec50b955-8811-4810-ba70-f44000e9704c submitted |
|
2018-08-11 03:03:19,853 cromwell-system-akka.dispatchers.api-dispatcher-67 INFO - CWL (v1.0) workflow 7956ba9d-3aa5-4817-bbbc-87615e22e697 submitted |
|
2018-08-11 03:03:20,005 WARN - Initiated a temporary lockdown because of exception: {"error":"No JSON data was found"} |
|
2018-08-11 03:03:20,005 ERROR - An exception occurred while sending the event to Sentry. |
|
io.sentry.connection.ConnectionException: {"error":"No JSON data was found"} |
|
at io.sentry.connection.HttpConnection.doSend(HttpConnection.java:216) |
|
at io.sentry.connection.AbstractConnection.send(AbstractConnection.java:76) |
|
at io.sentry.connection.AsyncConnection$EventSubmitter.run(AsyncConnection.java:185) |
|
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) |
|
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) |
|
at java.lang.Thread.run(Thread.java:748) |
|
Caused by: java.net.SocketTimeoutException: connect timed out |
|
at java.net.PlainSocketImpl.socketConnect(Native Method) |
|
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350) |
|
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206) |
|
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188) |
|
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392) |
|
at java.net.Socket.connect(Socket.java:589) |
|
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673) |
|
at sun.net.NetworkClient.doConnect(NetworkClient.java:175) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558) |
|
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264) |
|
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177) |
|
at sun.net.www.protocol.https.HttpsURLConnectionImpl.connect(HttpsURLConnectionImpl.java:153) |
|
at io.sentry.connection.HttpConnection.doSend(HttpConnection.java:168) |
|
... 5 common frames omitted |
|
2018-08-11 03:03:20,009 WARN - Initiated a temporary lockdown because of exception: {"error":"No JSON data was found"} |
|
2018-08-11 03:03:20,009 ERROR - An exception occurred while sending the event to Sentry. |
|
io.sentry.connection.ConnectionException: {"error":"No JSON data was found"} |
|
at io.sentry.connection.HttpConnection.doSend(HttpConnection.java:216) |
|
at io.sentry.connection.AbstractConnection.send(AbstractConnection.java:76) |
|
at io.sentry.connection.AsyncConnection$EventSubmitter.run(AsyncConnection.java:185) |
|
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) |
|
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) |
|
at java.lang.Thread.run(Thread.java:748) |
|
Caused by: java.net.SocketTimeoutException: connect timed out |
|
at java.net.PlainSocketImpl.socketConnect(Native Method) |
|
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350) |
|
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206) |
|
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188) |
|
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392) |
|
at java.net.Socket.connect(Socket.java:589) |
|
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673) |
|
at sun.net.NetworkClient.doConnect(NetworkClient.java:175) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558) |
|
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264) |
|
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177) |
|
at sun.net.www.protocol.https.HttpsURLConnectionImpl.connect(HttpsURLConnectionImpl.java:153) |
|
at io.sentry.connection.HttpConnection.doSend(HttpConnection.java:168) |
|
... 5 common frames omitted |
|
2018-08-11 03:03:20,341 ERROR - Test 'successfully run draft3_omitting_outputs' with workflow id '78e47c58-72a5-4b86-94ac-c9cb17b39ae3' failed on attempt 1 of 3 |
|
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded |
|
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181) |
|
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138) |
|
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304) |
|
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125) |
|
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70) |
|
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43) |
|
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44) |
|
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284) |
|
at scala.concurrent.Promise.complete(Promise.scala:49) |
|
at scala.concurrent.Promise.complete$(Promise.scala:48) |
|
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183) |
|
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
2018-08-11 03:03:20,405 cromwell-system-akka.dispatchers.api-dispatcher-65 INFO - WDL (1.0) workflow 6dff21b8-2de9-4cd4-94a7-3217ea2dade1 submitted |
|
2018-08-11 03:03:20,547 ERROR - Test 'successfully run member_access' with workflow id '88801cb6-a7aa-44a3-94ac-55a8c5dc39aa' failed on attempt 1 of 3 |
|
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded |
|
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181) |
|
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138) |
|
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304) |
|
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125) |
|
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70) |
|
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43) |
|
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44) |
|
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284) |
|
at scala.concurrent.Promise.complete(Promise.scala:49) |
|
at scala.concurrent.Promise.complete$(Promise.scala:48) |
|
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183) |
|
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
2018-08-11 03:03:20,566 cromwell-system-akka.dispatchers.api-dispatcher-65 INFO - Unspecified type (Unspecified version) workflow 1522d1c5-a39b-4ad6-a2a2-4291d4b968e1 submitted |
|
[32m- should fail to submit invalid_inputs_json (20 seconds, 394 milliseconds)[0m |
|
Metadata mismatch for 18d037d0-63d7-4ff3-a7c1-4dbdc20ce058 - retrying |
|
2018-08-11 03:03:22,380 ERROR - Test 'successfully run variable_scoping' with workflow id '4e18e509-c682-4276-9543-e1ea9f7a58dc' failed on attempt 1 of 3 |
|
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded |
|
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181) |
|
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138) |
|
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304) |
|
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125) |
|
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70) |
|
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43) |
|
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44) |
|
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284) |
|
at scala.concurrent.Promise.complete(Promise.scala:49) |
|
at scala.concurrent.Promise.complete$(Promise.scala:48) |
|
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183) |
|
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
2018-08-11 03:03:22,411 cromwell-system-akka.dispatchers.api-dispatcher-65 INFO - Unspecified type (Unspecified version) workflow e156075b-3665-4f74-a3d6-0e5b0a2c7c14 submitted |
|
2018-08-11 03:03:22,903 ERROR - Test 'successfully run iwdr_input_string_function' with workflow id 'd3618ad6-432e-4dac-963e-541cb77de944' failed on attempt 1 of 3 |
|
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded |
|
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181) |
|
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138) |
|
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304) |
|
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125) |
|
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70) |
|
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43) |
|
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44) |
|
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284) |
|
at scala.concurrent.Promise.complete(Promise.scala:49) |
|
at scala.concurrent.Promise.complete$(Promise.scala:48) |
|
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183) |
|
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
Metadata mismatch for 18d037d0-63d7-4ff3-a7c1-4dbdc20ce058 - retrying |
|
2018-08-11 03:03:22,931 cromwell-system-akka.dispatchers.api-dispatcher-67 INFO - CWL (v1.0) workflow 349a0c37-10db-40da-9337-b26ba7d3773a submitted |
|
2018-08-11 03:03:23,349 WARN - Graceful shutdown took too much time, forcing the shutdown. |
|
2018-08-11 03:03:23,349 WARN - 0 tasks failed to execute before shutdown. |
|
2018-08-11 03:03:23,349 ERROR - Test 'successfully run read_write_json' with workflow id '88a6fda1-fa5d-456b-8ebd-057a921d230e' failed on attempt 1 of 3 |
|
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded |
|
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181) |
|
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138) |
|
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304) |
|
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125) |
|
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70) |
|
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43) |
|
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44) |
|
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284) |
|
at scala.concurrent.Promise.complete(Promise.scala:49) |
|
at scala.concurrent.Promise.complete$(Promise.scala:48) |
|
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183) |
|
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
2018-08-11 03:03:23,387 WARN - Initiated a temporary lockdown because of exception: {"error":"No JSON data was found"} |
|
2018-08-11 03:03:23,388 ERROR - An exception occurred while sending the event to Sentry. |
|
io.sentry.connection.ConnectionException: {"error":"No JSON data was found"} |
|
at io.sentry.connection.HttpConnection.doSend(HttpConnection.java:216) |
|
at io.sentry.connection.AbstractConnection.send(AbstractConnection.java:76) |
|
at io.sentry.connection.AsyncConnection$EventSubmitter.run(AsyncConnection.java:185) |
|
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) |
|
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) |
|
at java.lang.Thread.run(Thread.java:748) |
|
Caused by: java.net.SocketTimeoutException: connect timed out |
|
at java.net.PlainSocketImpl.socketConnect(Native Method) |
|
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350) |
|
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206) |
|
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188) |
|
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392) |
|
at java.net.Socket.connect(Socket.java:589) |
|
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673) |
|
at sun.net.NetworkClient.doConnect(NetworkClient.java:175) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558) |
|
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264) |
|
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177) |
|
at sun.net.www.protocol.https.HttpsURLConnectionImpl.connect(HttpsURLConnectionImpl.java:153) |
|
at io.sentry.connection.HttpConnection.doSend(HttpConnection.java:168) |
|
... 5 common frames omitted |
|
2018-08-11 03:03:23,441 cromwell-system-akka.dispatchers.api-dispatcher-65 INFO - Unspecified type (Unspecified version) workflow 36f3b181-a6ca-4bba-8122-5921681f9c30 submitted |
|
[32m- should successfully run square (15 seconds, 81 milliseconds)[0m |
|
Metadata mismatch for 18d037d0-63d7-4ff3-a7c1-4dbdc20ce058 - retrying |
|
2018-08-11 03:03:26,080 ERROR - Test 'successfully run declarations' with workflow id '5040d120-3eb9-4c03-af9c-1b950c866c55' failed on attempt 1 of 3 |
|
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded |
|
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181) |
|
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138) |
|
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304) |
|
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125) |
|
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70) |
|
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43) |
|
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44) |
|
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284) |
|
at scala.concurrent.Promise.complete(Promise.scala:49) |
|
at scala.concurrent.Promise.complete$(Promise.scala:48) |
|
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183) |
|
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
2018-08-11 03:03:26,105 cromwell-system-akka.dispatchers.api-dispatcher-65 INFO - Unspecified type (Unspecified version) workflow 4f46f274-d37a-4080-b792-f7c7d1e4ec38 submitted |
|
Metadata mismatch for 18d037d0-63d7-4ff3-a7c1-4dbdc20ce058 - retrying |
|
Metadata mismatch for 18d037d0-63d7-4ff3-a7c1-4dbdc20ce058 - retrying |
|
Metadata mismatch for 18d037d0-63d7-4ff3-a7c1-4dbdc20ce058 - retrying |
|
2018-08-11 03:03:31,380 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - 26 new workflows fetched |
|
2018-08-11 03:03:31,381 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(4c8e6262-97b0-44ce-9c03-88729f6d29b8) |
|
2018-08-11 03:03:31,381 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-4c8e6262-97b0-44ce-9c03-88729f6d29b8 |
|
2018-08-11 03:03:31,381 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(e7ee3d80-1371-462a-b9e4-7f47b3d3e72a) |
|
2018-08-11 03:03:31,401 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-e7ee3d80-1371-462a-b9e4-7f47b3d3e72a |
|
2018-08-11 03:03:31,401 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(ba32f0ef-94ca-47fa-8da2-cfc2b5b36b01) |
|
2018-08-11 03:03:31,401 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-ba32f0ef-94ca-47fa-8da2-cfc2b5b36b01 |
|
2018-08-11 03:03:31,401 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(20e4ae72-496d-4b38-be24-845cea7aadad) |
|
2018-08-11 03:03:31,401 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-20e4ae72-496d-4b38-be24-845cea7aadad |
|
2018-08-11 03:03:31,401 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(af95ce90-ac96-4235-8254-98dd5f53878d) |
|
2018-08-11 03:03:31,401 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-af95ce90-ac96-4235-8254-98dd5f53878d |
|
2018-08-11 03:03:31,401 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(3be432f1-c4f3-4e1e-ad60-dbf04d97e1bf) |
|
2018-08-11 03:03:31,401 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-3be432f1-c4f3-4e1e-ad60-dbf04d97e1bf |
|
2018-08-11 03:03:31,401 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(7a9803d4-b4f5-45f9-aad9-3193335b7129) |
|
2018-08-11 03:03:31,402 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-7a9803d4-b4f5-45f9-aad9-3193335b7129 |
|
2018-08-11 03:03:31,402 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(171b1387-b7a4-416d-aa63-86829d8039dd) |
|
2018-08-11 03:03:31,402 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-171b1387-b7a4-416d-aa63-86829d8039dd |
|
2018-08-11 03:03:31,402 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(7c349a44-4eca-448d-9a02-114da3e0cd45) |
|
2018-08-11 03:03:31,402 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-7c349a44-4eca-448d-9a02-114da3e0cd45 |
|
2018-08-11 03:03:31,402 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(cd413a7b-1835-4a8f-87c7-7df351a5c649) |
|
2018-08-11 03:03:31,402 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-cd413a7b-1835-4a8f-87c7-7df351a5c649 |
|
2018-08-11 03:03:31,402 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(b89dd9bd-74c6-4f6e-8487-844be5fb23d9) |
|
2018-08-11 03:03:31,402 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-b89dd9bd-74c6-4f6e-8487-844be5fb23d9 |
|
2018-08-11 03:03:31,402 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(9885fa07-3820-45d9-8d28-a2c9bcd351f6) |
|
2018-08-11 03:03:31,402 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-9885fa07-3820-45d9-8d28-a2c9bcd351f6 |
|
2018-08-11 03:03:31,402 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(6648fdb1-fdf1-4996-82c5-4b8ef24674a7) |
|
2018-08-11 03:03:31,402 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-6648fdb1-fdf1-4996-82c5-4b8ef24674a7 |
|
2018-08-11 03:03:31,402 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(c9359ca2-3b35-46c3-9f8d-69f196f8c234) |
|
2018-08-11 03:03:31,402 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-c9359ca2-3b35-46c3-9f8d-69f196f8c234 |
|
2018-08-11 03:03:31,402 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(0e656752-aaad-4e45-9121-5b4c13ad7568) |
|
2018-08-11 03:03:31,402 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-0e656752-aaad-4e45-9121-5b4c13ad7568 |
|
2018-08-11 03:03:31,402 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(12075b5a-0b94-4d41-9c8d-a7296ca9c123) |
|
2018-08-11 03:03:31,402 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-12075b5a-0b94-4d41-9c8d-a7296ca9c123 |
|
2018-08-11 03:03:31,402 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(03623b51-49d1-4dd1-a156-75c8afdb3ba3) |
|
2018-08-11 03:03:31,402 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-03623b51-49d1-4dd1-a156-75c8afdb3ba3 |
|
2018-08-11 03:03:31,402 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(f2920645-5e3b-4310-825c-50f1225cf9b7) |
|
2018-08-11 03:03:31,402 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-f2920645-5e3b-4310-825c-50f1225cf9b7 |
|
2018-08-11 03:03:31,402 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(ec50b955-8811-4810-ba70-f44000e9704c) |
|
2018-08-11 03:03:31,402 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-ec50b955-8811-4810-ba70-f44000e9704c |
|
2018-08-11 03:03:31,403 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(7956ba9d-3aa5-4817-bbbc-87615e22e697) |
|
2018-08-11 03:03:31,403 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-7956ba9d-3aa5-4817-bbbc-87615e22e697 |
|
2018-08-11 03:03:31,403 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(6dff21b8-2de9-4cd4-94a7-3217ea2dade1) |
|
2018-08-11 03:03:31,403 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-6dff21b8-2de9-4cd4-94a7-3217ea2dade1 |
|
2018-08-11 03:03:31,403 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(1522d1c5-a39b-4ad6-a2a2-4291d4b968e1) |
|
2018-08-11 03:03:31,403 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-1522d1c5-a39b-4ad6-a2a2-4291d4b968e1 |
|
2018-08-11 03:03:31,403 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(e156075b-3665-4f74-a3d6-0e5b0a2c7c14) |
|
2018-08-11 03:03:31,403 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-e156075b-3665-4f74-a3d6-0e5b0a2c7c14 |
|
2018-08-11 03:03:31,403 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(349a0c37-10db-40da-9337-b26ba7d3773a) |
|
2018-08-11 03:03:31,403 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-349a0c37-10db-40da-9337-b26ba7d3773a |
|
2018-08-11 03:03:31,404 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(36f3b181-a6ca-4bba-8122-5921681f9c30) |
|
2018-08-11 03:03:31,404 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-36f3b181-a6ca-4bba-8122-5921681f9c30 |
|
2018-08-11 03:03:31,404 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(4f46f274-d37a-4080-b792-f7c7d1e4ec38) |
|
2018-08-11 03:03:31,404 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-4f46f274-d37a-4080-b792-f7c7d1e4ec38 |
|
2018-08-11 03:03:31,404 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - Retrieved 26 workflows from the WorkflowStoreActor |
|
2018-08-11 03:03:31,681 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - MaterializeWorkflowDescriptorActor [UUID(af95ce90)]: Parsing workflow as WDL Biscayne |
|
2018-08-11 03:03:31,681 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(7a9803d4)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:03:31,701 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - MaterializeWorkflowDescriptorActor [UUID(3be432f1)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:03:31,704 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - MaterializeWorkflowDescriptorActor [UUID(12075b5a)]: Parsing workflow as WDL 1.0 |
|
2018-08-11 03:03:31,720 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - MaterializeWorkflowDescriptorActor [UUID(b89dd9bd)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:03:31,761 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(171b1387)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:03:31,780 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(7c349a44)]: Parsing workflow as WDL 1.0 |
|
2018-08-11 03:03:31,780 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(7a9803d4)]: Call-to-Backend assignments: terminal_status.echo_sleep_exit -> Papi |
|
2018-08-11 03:03:31,787 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - MaterializeWorkflowDescriptorActor [UUID(3be432f1)]: Call-to-Backend assignments: lots_of_inputs.do_nothing -> Papi, lots_of_inputs.make_array -> Papi |
|
2018-08-11 03:03:31,805 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - MaterializeWorkflowDescriptorActor [UUID(6648fdb1)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:03:31,805 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(6dff21b8)]: Parsing workflow as WDL 1.0 |
|
2018-08-11 03:03:31,819 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - MaterializeWorkflowDescriptorActor [UUID(b89dd9bd)]: Call-to-Backend assignments: runtime_continueOnRC.continueOnRC2 -> Papi, runtime_continueOnRC.continueOnRC1 -> Papi, runtime_continueOnRC.finisher -> Papi, runtime_continueOnRC.continueOnRC3 -> Papi |
|
2018-08-11 03:03:31,833 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - MaterializeWorkflowDescriptorActor [UUID(12075b5a)]: Call-to-Backend assignments: optional_declarations.strings2 -> Papi, optional_declarations.strings -> Papi |
|
2018-08-11 03:03:31,838 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - MaterializeWorkflowDescriptorActor [UUID(349a0c37)]: Parsing workflow as CWL v1.0 |
|
2018-08-11 03:03:31,839 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - MaterializeWorkflowDescriptorActor [UUID(cd413a7b)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:03:31,860 INFO - Pre-Processing /tmp/349a0c37-10db-40da-9337-b26ba7d3773a.temp.2005326509091381200/349a0c37-10db-40da-9337-b26ba7d3773a.cwl |
|
2018-08-11 03:03:31,873 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(7c349a44)]: Call-to-Backend assignments: callable_imports.my_task -> Papi |
|
2018-08-11 03:03:31,874 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(36f3b181)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:03:31,874 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(6dff21b8)]: Call-to-Backend assignments: draft3_omitting_outputs.foo -> Papi, foo_in_a_box.foo -> Papi |
|
2018-08-11 03:03:31,879 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(ec50b955)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:03:31,915 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - MaterializeWorkflowDescriptorActor [UUID(6648fdb1)]: Call-to-Backend assignments: curl_wf.newsgrab -> Papi, curl_wf.news_reader -> Papi |
|
2018-08-11 03:03:31,922 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - MaterializeWorkflowDescriptorActor [UUID(f2920645)]: Parsing workflow as CWL v1.0 |
|
2018-08-11 03:03:31,937 INFO - Pre-Processing /tmp/f2920645-5e3b-4310-825c-50f1225cf9b7.temp.7408926811979967929/f2920645-5e3b-4310-825c-50f1225cf9b7.cwl |
|
2018-08-11 03:03:31,948 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - MaterializeWorkflowDescriptorActor [UUID(af95ce90)]: Call-to-Backend assignments: |
|
2018-08-11 03:03:31,979 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(ec50b955)]: Call-to-Backend assignments: mirror_mirror_on_the_wall.mirror1 -> Papi, mirror_mirror_on_the_wall.mirror2 -> Papi, mirror_mirror_on_the_wall.mkFile -> Papi |
|
2018-08-11 03:03:31,989 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(171b1387)]: Call-to-Backend assignments: subhello.hello -> Papi |
|
2018-08-11 03:03:31,991 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(e156075b)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:03:32,022 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(7956ba9d)]: Parsing workflow as CWL v1.0 |
|
2018-08-11 03:03:32,024 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor WorkflowActor-4506a204-53c2-42a1-95d8-0ca23ad2a44e is in a terminal state: WorkflowSucceededState |
|
2018-08-11 03:03:32,024 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - MaterializeWorkflowDescriptorActor [UUID(0e656752)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:03:32,030 INFO - Pre-Processing /tmp/7956ba9d-3aa5-4817-bbbc-87615e22e697.temp.7159836909039717642/7956ba9d-3aa5-4817-bbbc-87615e22e697.cwl |
|
2018-08-11 03:03:32,050 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(36f3b181)]: Call-to-Backend assignments: read_write_json.round_trip -> Papi, read_write_json.make_some_json -> Papi, read_write_json.success -> Papi |
|
2018-08-11 03:03:32,059 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(ba32f0ef)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:03:32,066 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - MaterializeWorkflowDescriptorActor [UUID(0e656752)]: Call-to-Backend assignments: woot.notroot -> Papi |
|
2018-08-11 03:03:32,069 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - MaterializeWorkflowDescriptorActor [UUID(9885fa07)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:03:32,110 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(e156075b)]: Call-to-Backend assignments: scoping_wf.scoping_task -> Papi |
|
2018-08-11 03:03:32,114 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(4f46f274)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:03:32,117 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - MaterializeWorkflowDescriptorActor [UUID(9885fa07)]: Call-to-Backend assignments: monitoring_log.get_stats -> Papi |
|
2018-08-11 03:03:32,124 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - MaterializeWorkflowDescriptorActor [UUID(c9359ca2)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:03:32,138 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(03623b51)]: Parsing workflow as WDL 1.0 |
|
2018-08-11 03:03:32,262 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - MaterializeWorkflowDescriptorActor [UUID(c9359ca2)]: Call-to-Backend assignments: wdl_function_locations.wdl_function_locations_ii -> Papi, wdl_function_locations.wdl_function_locations_i -> Papi |
|
2018-08-11 03:03:32,293 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - MaterializeWorkflowDescriptorActor [UUID(e7ee3d80)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:03:32,345 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(4f46f274)]: Call-to-Backend assignments: two_step.cat -> Papi, two_step.make_a_file -> Papi, two_step.cgrep -> Papi |
|
2018-08-11 03:03:32,356 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(1522d1c5)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:03:32,379 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(03623b51)]: Call-to-Backend assignments: |
|
2018-08-11 03:03:32,386 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(20e4ae72)]: Parsing workflow as WDL 1.0 |
|
2018-08-11 03:03:32,449 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(20e4ae72)]: Call-to-Backend assignments: custom_mount_point.t -> Papi |
|
2018-08-11 03:03:32,482 cromwell-system-akka.dispatchers.engine-dispatcher-25 ERROR - WorkflowManagerActor Workflow ba32f0ef-94ca-47fa-8da2-cfc2b5b36b01 failed (during MaterializingWorkflowDescriptorState): cromwell.engine.workflow.lifecycle.materialization.MaterializeWorkflowDescriptorActor$$anon$1: Workflow input processing failed: |
|
ERROR: Call references a task (sub_inputs) that doesn't exist (line 19, col 9) |
|
|
|
call sub_inputs {} |
|
^ |
|
|
|
at cromwell.engine.workflow.lifecycle.materialization.MaterializeWorkflowDescriptorActor.cromwell$engine$workflow$lifecycle$materialization$MaterializeWorkflowDescriptorActor$$workflowInitializationFailed(MaterializeWorkflowDescriptorActor.scala:209) |
|
at cromwell.engine.workflow.lifecycle.materialization.MaterializeWorkflowDescriptorActor$$anonfun$2.applyOrElse(MaterializeWorkflowDescriptorActor.scala:179) |
|
at cromwell.engine.workflow.lifecycle.materialization.MaterializeWorkflowDescriptorActor$$anonfun$2.applyOrElse(MaterializeWorkflowDescriptorActor.scala:174) |
|
at scala.runtime.AbstractPartialFunction.apply(AbstractPartialFunction.scala:34) |
|
at akka.actor.FSM.processEvent(FSM.scala:670) |
|
at akka.actor.FSM.processEvent$(FSM.scala:667) |
|
at cromwell.engine.workflow.lifecycle.materialization.MaterializeWorkflowDescriptorActor.akka$actor$LoggingFSM$$super$processEvent(MaterializeWorkflowDescriptorActor.scala:132) |
|
at akka.actor.LoggingFSM.processEvent(FSM.scala:806) |
|
at akka.actor.LoggingFSM.processEvent$(FSM.scala:788) |
|
at cromwell.engine.workflow.lifecycle.materialization.MaterializeWorkflowDescriptorActor.processEvent(MaterializeWorkflowDescriptorActor.scala:132) |
|
at akka.actor.FSM.akka$actor$FSM$$processMsg(FSM.scala:664) |
|
at akka.actor.FSM$$anonfun$receive$1.applyOrElse(FSM.scala:658) |
|
at akka.actor.Actor.aroundReceive(Actor.scala:517) |
|
at akka.actor.Actor.aroundReceive$(Actor.scala:515) |
|
at cromwell.engine.workflow.lifecycle.materialization.MaterializeWorkflowDescriptorActor.aroundReceive(MaterializeWorkflowDescriptorActor.scala:132) |
|
at akka.actor.ActorCell.receiveMessage(ActorCell.scala:588) |
|
at akka.actor.ActorCell.invoke(ActorCell.scala:557) |
|
at akka.dispatch.Mailbox.processMailbox(Mailbox.scala:258) |
|
at akka.dispatch.Mailbox.run(Mailbox.scala:225) |
|
at akka.dispatch.Mailbox.exec(Mailbox.scala:235) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
|
|
2018-08-11 03:03:32,483 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor WorkflowActor-ba32f0ef-94ca-47fa-8da2-cfc2b5b36b01 is in a terminal state: WorkflowFailedState |
|
2018-08-11 03:03:32,505 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(4c8e6262)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:03:32,512 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - MaterializeWorkflowDescriptorActor [UUID(e7ee3d80)]: Call-to-Backend assignments: invalidate_bad_caches.make_file -> Papi-Caching-No-Copy, invalidate_bad_caches.read_file -> Papi-Caching-No-Copy, invalidate_bad_caches.invalidate_cache_and_remake_file -> Papi-Caching-No-Copy, invalidate_bad_caches.delete_file_in_gcs -> Papi-Caching-No-Copy |
|
2018-08-11 03:03:32,579 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(1522d1c5)]: Call-to-Backend assignments: test.echo_str_2 -> Papi, test.echo_str -> Papi |
|
2018-08-11 03:03:32,599 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor WorkflowActor-2fb6debd-2af2-4054-8b2f-868061c6c4e9 is in a terminal state: WorkflowSucceededState |
|
2018-08-11 03:03:32,617 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor WorkflowActor-5f61c4de-3e98-4c84-92e2-559be38bc189 is in a terminal state: WorkflowSucceededState |
|
2018-08-11 03:03:32,633 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(4c8e6262)]: Call-to-Backend assignments: wf.write_map -> Papi, wf.read_map -> Papi |
|
Metadata mismatch for 18d037d0-63d7-4ff3-a7c1-4dbdc20ce058 - retrying |
|
Metadata mismatch for 18d037d0-63d7-4ff3-a7c1-4dbdc20ce058 - retrying |
|
2018-08-11 03:03:35,736 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowExecutionActor-af95ce90-ac96-4235-8254-98dd5f53878d [UUID(af95ce90)]: Workflow biscayne_as_map_et_al complete. Final Outputs: |
|
{ |
|
"biscayne_as_map_et_al.x_as_pairs_out": [{ |
|
"left": "a", |
|
"right": 1 |
|
}, { |
|
"left": "b", |
|
"right": 2 |
|
}, { |
|
"left": "c", |
|
"right": 3 |
|
}], |
|
"biscayne_as_map_et_al.z_collect_by_key_out": { |
|
"b": [2], |
|
"a": [1, 3] |
|
}, |
|
"biscayne_as_map_et_al.x_as_map_out": { |
|
"b": 2, |
|
"c": 3, |
|
"a": 1 |
|
}, |
|
"biscayne_as_map_et_al.y_as_map_out": { |
|
"b": { |
|
"left": "b.bam", |
|
"right": "b.bai" |
|
}, |
|
"a": { |
|
"left": "a.bam", |
|
"right": "a.bai" |
|
} |
|
}, |
|
"biscayne_as_map_et_al.x_collect_by_key_out": { |
|
"b": [2], |
|
"c": [3], |
|
"a": [1] |
|
}, |
|
"biscayne_as_map_et_al.y_as_pairs_out": [{ |
|
"left": "a", |
|
"right": { |
|
"left": "a.bam", |
|
"right": "a.bai" |
|
} |
|
}, { |
|
"left": "b", |
|
"right": { |
|
"left": "b.bam", |
|
"right": "b.bai" |
|
} |
|
}] |
|
} |
|
2018-08-11 03:03:36,045 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(7956ba9d)]: Call-to-Backend assignments: 7956ba9d-3aa5-4817-bbbc-87615e22e697.cwl -> Papi |
|
2018-08-11 03:03:36,142 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - MaterializeWorkflowDescriptorActor [UUID(f2920645)]: Call-to-Backend assignments: cwl-cache-between-workflows.step-product -> Papi, cwl-cache-between-workflows.step-average -> Papi |
|
2018-08-11 03:03:36,247 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - MaterializeWorkflowDescriptorActor [UUID(349a0c37)]: Call-to-Backend assignments: iwdr_input_string_function -> Papi |
|
2018-08-11 03:03:36,672 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowExecutionActor-03623b51-49d1-4dd1-a156-75c8afdb3ba3 [UUID(03623b51)]: Workflow taskless_engine_functions complete. Final Outputs: |
|
{ |
|
"taskless_engine_functions.flattened_map": [{ |
|
"left": 1, |
|
"right": "one" |
|
}, { |
|
"left": 2, |
|
"right": "two" |
|
}, { |
|
"left": 11, |
|
"right": "eleven" |
|
}, { |
|
"left": 22, |
|
"right": "twenty-two" |
|
}], |
|
"taskless_engine_functions.f_floor": 1, |
|
"taskless_engine_functions.transposed_matrix": [[1, 1], [0, 0]], |
|
"taskless_engine_functions.file_basename": "file.txt", |
|
"taskless_engine_functions.f_ceiling": 2, |
|
"taskless_engine_functions.matrix_length": 2, |
|
"taskless_engine_functions.file_basename_extensionless": "file", |
|
"taskless_engine_functions.f_round": 1, |
|
"taskless_engine_functions.flattened_matrix": [1, 0, 1, 0], |
|
"taskless_engine_functions.int_cross_string": [{ |
|
"left": 1, |
|
"right": "a" |
|
}, { |
|
"left": 1, |
|
"right": "b" |
|
}, { |
|
"left": 2, |
|
"right": "a" |
|
}, { |
|
"left": 2, |
|
"right": "b" |
|
}], |
|
"taskless_engine_functions.flattened_matrix_length": 4 |
|
} |
|
2018-08-11 03:03:36,839 cromwell-system-akka.dispatchers.api-dispatcher-58 INFO - Unspecified type (Unspecified version) workflow d18fbada-0555-4e80-a08e-bcc4d4d9ba8d submitted |
|
Metadata mismatch for 18d037d0-63d7-4ff3-a7c1-4dbdc20ce058 - retrying |
|
2018-08-11 03:03:38,967 ERROR - Test 'fail during execution max_retries' with workflow id '18d037d0-63d7-4ff3-a7c1-4dbdc20ce058' failed on attempt 1 of 3 |
|
centaur.test.CentaurTestException: Invalid metadata response: |
|
-Missing key: retry_for_me.broken_task.-1.attempt |
|
-Missing key: retry_for_me.broken_task.-1.executionStatus |
|
|
|
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26) |
|
at centaur.test.Operations$$anon$14.checkDiff$1(Test.scala:358) |
|
at centaur.test.Operations$$anon$14.$anonfun$validateMetadata$3(Test.scala:382) |
|
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138) |
|
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304) |
|
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125) |
|
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70) |
|
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43) |
|
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44) |
|
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284) |
|
at scala.concurrent.Promise.complete(Promise.scala:49) |
|
at scala.concurrent.Promise.complete$(Promise.scala:48) |
|
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183) |
|
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
2018-08-11 03:03:38,996 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - Unspecified type (Unspecified version) workflow 2d13b86b-b39f-4bd1-bbbc-861fe998bf3b submitted |
|
2018-08-11 03:03:39,581 cromwell-system-akka.dispatchers.api-dispatcher-58 INFO - Unspecified type (Unspecified version) workflow eb2bbf62-e6c4-4864-a109-55b70b728ff0 submitted |
|
2018-08-11 03:03:40,187 cromwell-system-akka.dispatchers.backend-dispatcher-78 WARN - 1 failures (from 25 requests) fetching JES statuses: connect timed out |
|
2018-08-11 03:03:40,251 cromwell-system-akka.dispatchers.backend-dispatcher-78 WARN - Papi-Caching-No-Copy [UUID(e7ee3d80)]: Key/s [backend] is/are not supported by backend. Unsupported attributes will not be part of job executions. |
|
2018-08-11 03:03:40,257 cromwell-system-akka.dispatchers.backend-dispatcher-78 WARN - Papi-Caching-No-Copy [UUID(e7ee3d80)]: Key/s [backend] is/are not supported by backend. Unsupported attributes will not be part of job executions. |
|
2018-08-11 03:03:40,269 cromwell-system-akka.dispatchers.backend-dispatcher-78 WARN - Papi-Caching-No-Copy [UUID(e7ee3d80)]: Key/s [backend] is/are not supported by backend. Unsupported attributes will not be part of job executions. |
|
2018-08-11 03:03:40,270 cromwell-system-akka.dispatchers.backend-dispatcher-78 WARN - Papi-Caching-No-Copy [UUID(e7ee3d80)]: Key/s [backend] is/are not supported by backend. Unsupported attributes will not be part of job executions. |
|
2018-08-11 03:03:40,472 cromwell-system-akka.dispatchers.backend-dispatcher-78 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(819450a6)length.lens:NA:1]: Status change from - to Running |
|
2018-08-11 03:03:40,478 cromwell-system-akka.dispatchers.backend-dispatcher-78 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(29014d92)multplesourcedarray.source6:NA:1]: `sleep 11 |
|
echo blah` |
|
2018-08-11 03:03:40,491 cromwell-system-akka.dispatchers.backend-dispatcher-80 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(86bc228d)declarations_in_ifs.double_i:NA:1]: `echo $(( 5 * 2 ))` |
|
2018-08-11 03:03:40,502 cromwell-system-akka.dispatchers.backend-dispatcher-81 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(5e287608)forkjoin.mkFile:NA:1]: `for i in `seq 1 1000` |
|
do |
|
echo $i |
|
done` |
|
2018-08-11 03:03:40,523 cromwell-system-akka.dispatchers.backend-dispatcher-81 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(0bae37d3)draft3_optional_addition.call_me:0:1]: `echo "cmd --only-with-maybe_i 0"` |
|
2018-08-11 03:03:40,534 cromwell-system-akka.dispatchers.backend-dispatcher-82 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(29014d92)multplesourcedarray.source4:NA:1]: `sleep 4 |
|
echo blah` |
|
2018-08-11 03:03:40,546 cromwell-system-akka.dispatchers.backend-dispatcher-83 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(da0a3242)globbingindex.glob_task:NA:1]: `echo "staticFile" > staticFile.txt |
|
echo "staticArray" > staticArray.txt |
|
echo "globFile" > globFile.txt |
|
echo "globArray" > globArray.txt` |
|
2018-08-11 03:03:40,559 cromwell-system-akka.dispatchers.backend-dispatcher-84 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(29014d92)multplesourcedarray.source5:NA:1]: `sleep 10 |
|
echo blah` |
|
2018-08-11 03:03:40,567 cromwell-system-akka.dispatchers.backend-dispatcher-85 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(29014d92)multplesourcedarray.source2:NA:1]: `sleep 2 |
|
echo blah` |
|
2018-08-11 03:03:40,576 cromwell-system-akka.dispatchers.backend-dispatcher-86 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(9a862b7e)declarations_as_nodes.t1:NA:1]: `echo "hello"` |
|
2018-08-11 03:03:40,586 cromwell-system-akka.dispatchers.backend-dispatcher-87 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(0bae37d3)draft3_optional_addition.call_me:1:1]: `echo "cmd"` |
|
2018-08-11 03:03:40,595 cromwell-system-akka.dispatchers.backend-dispatcher-88 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(29014d92)multplesourcedarray.source1:NA:1]: `sleep 1 |
|
echo blah` |
|
2018-08-11 03:03:40,598 cromwell-system-akka.dispatchers.backend-dispatcher-89 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(bfe074e7)draft3_read_file_limits.readObject:NA:1]: Status change from - to Running |
|
2018-08-11 03:03:40,624 cromwell-system-akka.dispatchers.backend-dispatcher-89 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(6a39077e)subhello.hello:NA:1]: `` |
|
2018-08-11 03:03:40,632 cromwell-system-akka.dispatchers.backend-dispatcher-89 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(f8901107)nested_lookups.throwaway2:NA:1]: `echo 27` |
|
2018-08-11 03:03:40,643 cromwell-system-akka.dispatchers.backend-dispatcher-90 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(29014d92)multplesourcedarray.source7:NA:1]: `sleep 12 |
|
echo blah` |
|
2018-08-11 03:03:40,648 cromwell-system-akka.dispatchers.backend-dispatcher-91 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(bfe074e7)draft3_read_file_limits.readObjects:NA:1]: Status change from - to Running |
|
2018-08-11 03:03:40,652 cromwell-system-akka.dispatchers.backend-dispatcher-91 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(f8901107)nested_lookups.throwaway1:NA:1]: `echo 27` |
|
2018-08-11 03:03:40,658 cromwell-system-akka.dispatchers.backend-dispatcher-92 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(29014d92)multplesourcedarray.source3:NA:1]: `sleep 3 |
|
echo blah` |
|
2018-08-11 03:03:40,663 cromwell-system-akka.dispatchers.backend-dispatcher-93 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(f8901107)nested_lookups.m1:NA:1]: `echo 27` |
|
2018-08-11 03:03:40,668 cromwell-system-akka.dispatchers.backend-dispatcher-94 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(120f534f)subhello.hello:NA:1]: `` |
|
2018-08-11 03:03:40,673 cromwell-system-akka.dispatchers.backend-dispatcher-94 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(f8901107)nested_lookups.needs_wf_input:NA:1]: `echo 2050` |
|
2018-08-11 03:03:40,686 cromwell-system-akka.dispatchers.backend-dispatcher-95 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(30ebe86b)subhello.hello:NA:1]: `` |
|
2018-08-11 03:03:40,690 cromwell-system-akka.dispatchers.backend-dispatcher-95 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(bfe074e7)draft3_read_file_limits.readLines:NA:1]: Status change from - to Running |
|
2018-08-11 03:03:40,690 cromwell-system-akka.dispatchers.backend-dispatcher-95 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(6de9f48d)restart_while_failing.A:NA:1]: Status change from - to Running |
|
2018-08-11 03:03:40,691 cromwell-system-akka.dispatchers.backend-dispatcher-95 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(6de9f48d)restart_while_failing.sleep_exit:3:1]: Status change from - to Running |
|
2018-08-11 03:03:40,691 cromwell-system-akka.dispatchers.backend-dispatcher-95 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(bfe074e7)draft3_read_file_limits.readString:NA:1]: Status change from - to Running |
|
2018-08-11 03:03:40,691 cromwell-system-akka.dispatchers.backend-dispatcher-95 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(bfe074e7)draft3_read_file_limits.readMap:NA:1]: Status change from - to Running |
|
2018-08-11 03:03:40,691 cromwell-system-akka.dispatchers.backend-dispatcher-95 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(6de9f48d)restart_while_failing.sleep_exit:2:1]: Status change from - to Running |
|
2018-08-11 03:03:40,692 cromwell-system-akka.dispatchers.backend-dispatcher-95 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(bfe074e7)draft3_read_file_limits.readJson:NA:1]: Status change from - to Running |
|
2018-08-11 03:03:40,693 cromwell-system-akka.dispatchers.backend-dispatcher-95 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(8efa7bd2)badExample.bad:NA:1]: `echo "hello" > a` |
|
2018-08-11 03:03:40,709 cromwell-system-akka.dispatchers.backend-dispatcher-95 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(bfe074e7)draft3_read_file_limits.readTsv:NA:1]: Status change from - to Running |
|
2018-08-11 03:03:40,710 cromwell-system-akka.dispatchers.backend-dispatcher-95 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(bfe074e7)draft3_read_file_limits.readBoolean:NA:1]: Status change from - to Running |
|
2018-08-11 03:03:40,710 cromwell-system-akka.dispatchers.backend-dispatcher-95 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(bfe074e7)draft3_read_file_limits.readFloat:NA:1]: Status change from - to Running |
|
2018-08-11 03:03:40,711 cromwell-system-akka.dispatchers.backend-dispatcher-95 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(6de9f48d)restart_while_failing.sleep_exit:4:1]: Status change from - to Running |
|
2018-08-11 03:03:40,711 cromwell-system-akka.dispatchers.backend-dispatcher-95 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(6de9f48d)restart_while_failing.sleep_exit:1:1]: Status change from - to Running |
|
2018-08-11 03:03:40,712 cromwell-system-akka.dispatchers.backend-dispatcher-95 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(6de9f48d)restart_while_failing.sleep_exit:0:1]: Status change from - to Running |
|
2018-08-11 03:03:40,713 cromwell-system-akka.dispatchers.backend-dispatcher-95 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(bfe074e7)draft3_read_file_limits.readInt:NA:1]: Status change from - to Running |
|
2018-08-11 03:03:40,714 cromwell-system-akka.dispatchers.backend-dispatcher-95 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(c09bd460)filearrayoutput.createFileArray:NA:1]: Status change from - to Running |
|
2018-08-11 03:03:40,749 cromwell-system-akka.dispatchers.backend-dispatcher-95 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(45af4273)ifs_in_scatters.init:NA:1]: Status change from - to Running |
|
2018-08-11 03:03:40,749 cromwell-system-akka.dispatchers.engine-dispatcher-30 ERROR - WorkflowManagerActor Workflow f5fda0a4-41e1-4831-8b31-d217e968a68c failed (during ExecutingWorkflowState): java.lang.RuntimeException: Failed to evaluate 'missing_input_failure.hello.addressee' (reason 1 of 1): Evaluating read_string(wf_hello_input) failed: java.io.IOException: Could not read from gs://nonexistingbucket/path/doesnt/exist: File not found: gs://nonexistingbucket/path/doesnt/exist |
|
at cromwell.engine.workflow.lifecycle.execution.keys.ExpressionKey.processRunnable(ExpressionKey.scala:29) |
|
at cromwell.engine.workflow.lifecycle.execution.WorkflowExecutionActor.$anonfun$processRunnableTaskCallInputExpression$4(WorkflowExecutionActor.scala:483) |
|
at scala.util.Either.flatMap(Either.scala:338) |
|
at cromwell.engine.workflow.lifecycle.execution.WorkflowExecutionActor.$anonfun$processRunnableTaskCallInputExpression$2(WorkflowExecutionActor.scala:480) |
|
at scala.util.Either.flatMap(Either.scala:338) |
|
at cromwell.engine.workflow.lifecycle.execution.WorkflowExecutionActor.$anonfun$processRunnableTaskCallInputExpression$1(WorkflowExecutionActor.scala:479) |
|
at scala.util.Either.flatMap(Either.scala:338) |
|
at cromwell.engine.workflow.lifecycle.execution.WorkflowExecutionActor.processRunnableTaskCallInputExpression(WorkflowExecutionActor.scala:478) |
|
at cromwell.engine.workflow.lifecycle.execution.WorkflowExecutionActor.$anonfun$startRunnableNodes$4(WorkflowExecutionActor.scala:452) |
|
at cats.instances.ListInstances$$anon$1.$anonfun$traverse$2(list.scala:73) |
|
at cats.instances.ListInstances$$anon$1.loop$2(list.scala:63) |
|
at cats.instances.ListInstances$$anon$1.$anonfun$foldRight$2(list.scala:65) |
|
at cats.Eval$.advance(Eval.scala:272) |
|
at cats.Eval$.loop$1(Eval.scala:354) |
|
at cats.Eval$.cats$Eval$$evaluate(Eval.scala:372) |
|
at cats.Eval$Defer.value(Eval.scala:258) |
|
at cats.instances.ListInstances$$anon$1.traverse(list.scala:72) |
|
at cats.instances.ListInstances$$anon$1.traverse(list.scala:12) |
|
at cats.Traverse$Ops.traverse(Traverse.scala:19) |
|
at cats.Traverse$Ops.traverse$(Traverse.scala:19) |
|
at cats.Traverse$ToTraverseOps$$anon$3.traverse(Traverse.scala:19) |
|
at cromwell.engine.workflow.lifecycle.execution.WorkflowExecutionActor.cromwell$engine$workflow$lifecycle$execution$WorkflowExecutionActor$$startRunnableNodes(WorkflowExecutionActor.scala:447) |
|
at cromwell.engine.workflow.lifecycle.execution.WorkflowExecutionActor$$anonfun$5.applyOrElse(WorkflowExecutionActor.scala:152) |
|
at cromwell.engine.workflow.lifecycle.execution.WorkflowExecutionActor$$anonfun$5.applyOrElse(WorkflowExecutionActor.scala:150) |
|
at scala.PartialFunction$OrElse.apply(PartialFunction.scala:168) |
|
at akka.actor.FSM.processEvent(FSM.scala:673) |
|
at akka.actor.FSM.processEvent$(FSM.scala:667) |
|
at cromwell.engine.workflow.lifecycle.execution.WorkflowExecutionActor.akka$actor$LoggingFSM$$super$processEvent(WorkflowExecutionActor.scala:43) |
|
at akka.actor.LoggingFSM.processEvent(FSM.scala:806) |
|
at akka.actor.LoggingFSM.processEvent$(FSM.scala:788) |
|
at cromwell.engine.workflow.lifecycle.execution.WorkflowExecutionActor.processEvent(WorkflowExecutionActor.scala:43) |
|
at akka.actor.FSM.akka$actor$FSM$$processMsg(FSM.scala:664) |
|
at akka.actor.FSM$$anonfun$receive$1.applyOrElse(FSM.scala:658) |
|
at akka.actor.Actor.aroundReceive(Actor.scala:517) |
|
at akka.actor.Actor.aroundReceive$(Actor.scala:515) |
|
at cromwell.engine.workflow.lifecycle.execution.WorkflowExecutionActor.akka$actor$Timers$$super$aroundReceive(WorkflowExecutionActor.scala:43) |
|
at akka.actor.Timers.aroundReceive(Timers.scala:51) |
|
at akka.actor.Timers.aroundReceive$(Timers.scala:40) |
|
at cromwell.engine.workflow.lifecycle.execution.WorkflowExecutionActor.aroundReceive(WorkflowExecutionActor.scala:43) |
|
at akka.actor.ActorCell.receiveMessage(ActorCell.scala:588) |
|
at akka.actor.ActorCell.invoke(ActorCell.scala:557) |
|
at akka.dispatch.Mailbox.processMailbox(Mailbox.scala:258) |
|
at akka.dispatch.Mailbox.run(Mailbox.scala:225) |
|
at akka.dispatch.Mailbox.exec(Mailbox.scala:235) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
|
|
2018-08-11 03:03:40,749 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor WorkflowActor-f5fda0a4-41e1-4831-8b31-d217e968a68c is in a terminal state: WorkflowFailedState |
|
2018-08-11 03:03:40,868 cromwell-system-akka.dispatchers.backend-dispatcher-95 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(45af4273)ifs_in_scatters.validate_int:1:1]: Status change from - to Running |
|
2018-08-11 03:03:40,868 cromwell-system-akka.dispatchers.backend-dispatcher-95 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(45af4273)ifs_in_scatters.validate_int:2:1]: Status change from - to Running |
|
2018-08-11 03:03:42,821 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowExecutionActor-7f63eea1-9295-4060-aca6-b2dc353c9494 [UUID(7f63eea1)]: Starting cont_while_possible_scatter.odd_numbers_only (4 shards) |
|
2018-08-11 03:03:43,482 cromwell-system-akka.dispatchers.api-dispatcher-65 INFO - WDL (1.0) workflow f019fed2-8f38-449b-8871-3b2a6331a780 submitted |
|
2018-08-11 03:03:44,359 cromwell-system-akka.dispatchers.api-dispatcher-67 INFO - Unspecified type (Unspecified version) workflow 8d1c0d0f-33bb-449c-b0dc-53b1d60c42df submitted |
|
[32m- should successfully run draft3_default_input_overrides (15 seconds, 80 milliseconds)[0m |
|
[32m- should fail during execution missing_input_failure_papiv2 (1 minute, 25 seconds)[0m |
|
2018-08-11 03:03:49,687 cromwell-system-akka.dispatchers.api-dispatcher-58 INFO - Unspecified type (Unspecified version) workflow 8a56905f-5f6e-4eb1-b445-0c032ec6ee37 submitted |
|
Aug 11, 2018 3:03:52 AM com.google.api.client.http.HttpRequest execute |
|
WARNING: exception thrown while executing request |
|
java.net.SocketTimeoutException: connect timed out |
|
at java.net.PlainSocketImpl.socketConnect(Native Method) |
|
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350) |
|
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206) |
|
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188) |
|
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392) |
|
at java.net.Socket.connect(Socket.java:589) |
|
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673) |
|
at sun.net.NetworkClient.doConnect(NetworkClient.java:175) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558) |
|
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264) |
|
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291) |
|
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250) |
|
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981) |
|
at com.google.auth.oauth2.ServiceAccountCredentials.refreshAccessToken(ServiceAccountCredentials.java:378) |
|
at com.google.auth.oauth2.OAuth2Credentials.refresh(OAuth2Credentials.java:160) |
|
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode.$anonfun$credentialValidation$1(GoogleAuthMode.scala:112) |
|
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode.$anonfun$credentialValidation$1$adapted(GoogleAuthMode.scala:112) |
|
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode.$anonfun$validateCredential$1(GoogleAuthMode.scala:115) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.util.Try$.apply(Try.scala:209) |
|
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode.validateCredential(GoogleAuthMode.scala:115) |
|
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode.validateCredential$(GoogleAuthMode.scala:114) |
|
at cromwell.cloudsupport.gcp.auth.ServiceAccountMode.validateCredential(GoogleAuthMode.scala:150) |
|
at cromwell.cloudsupport.gcp.auth.ServiceAccountMode._credential$lzycompute(GoogleAuthMode.scala:169) |
|
at cromwell.cloudsupport.gcp.auth.ServiceAccountMode._credential(GoogleAuthMode.scala:158) |
|
at cromwell.cloudsupport.gcp.auth.ServiceAccountMode.credential(GoogleAuthMode.scala:172) |
|
at cromwell.filesystems.gcs.GoogleUtil$EnhancedGoogleAuthMode$.credential$1(GoogleUtil.scala:33) |
|
at cromwell.filesystems.gcs.GoogleUtil$EnhancedGoogleAuthMode$.$anonfun$retryCredential$4(GoogleUtil.scala:49) |
|
at scala.concurrent.Future$.$anonfun$apply$1(Future.scala:654) |
|
at scala.util.Success.$anonfun$map$1(Try.scala:251) |
|
at scala.util.Success.map(Try.scala:209) |
|
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288) |
|
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29) |
|
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
|
|
Aug 11, 2018 3:03:52 AM com.google.api.client.http.HttpRequest execute |
|
WARNING: exception thrown while executing request |
|
java.net.SocketTimeoutException: connect timed out |
|
at java.net.PlainSocketImpl.socketConnect(Native Method) |
|
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350) |
|
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206) |
|
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188) |
|
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392) |
|
at java.net.Socket.connect(Socket.java:589) |
|
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673) |
|
at sun.net.NetworkClient.doConnect(NetworkClient.java:175) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558) |
|
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264) |
|
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291) |
|
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250) |
|
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981) |
|
at com.google.auth.oauth2.ServiceAccountCredentials.refreshAccessToken(ServiceAccountCredentials.java:378) |
|
at com.google.auth.oauth2.OAuth2Credentials.refresh(OAuth2Credentials.java:160) |
|
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode.$anonfun$credentialValidation$1(GoogleAuthMode.scala:112) |
|
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode.$anonfun$credentialValidation$1$adapted(GoogleAuthMode.scala:112) |
|
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode.$anonfun$validateCredential$1(GoogleAuthMode.scala:115) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.util.Try$.apply(Try.scala:209) |
|
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode.validateCredential(GoogleAuthMode.scala:115) |
|
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode.validateCredential$(GoogleAuthMode.scala:114) |
|
at cromwell.cloudsupport.gcp.auth.ServiceAccountMode.validateCredential(GoogleAuthMode.scala:150) |
|
at cromwell.cloudsupport.gcp.auth.ServiceAccountMode._credential$lzycompute(GoogleAuthMode.scala:169) |
|
at cromwell.cloudsupport.gcp.auth.ServiceAccountMode._credential(GoogleAuthMode.scala:158) |
|
at cromwell.cloudsupport.gcp.auth.ServiceAccountMode.credential(GoogleAuthMode.scala:172) |
|
at cromwell.filesystems.gcs.GoogleUtil$EnhancedGoogleAuthMode$.credential$1(GoogleUtil.scala:33) |
|
at cromwell.filesystems.gcs.GoogleUtil$EnhancedGoogleAuthMode$.$anonfun$retryCredential$4(GoogleUtil.scala:49) |
|
at scala.concurrent.Future$.$anonfun$apply$1(Future.scala:654) |
|
at scala.util.Success.$anonfun$map$1(Try.scala:251) |
|
at scala.util.Success.map(Try.scala:209) |
|
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288) |
|
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29) |
|
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
|
|
2018-08-11 03:04:01,125 cromwell-system-akka.dispatchers.backend-dispatcher-95 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(45af4273)ifs_in_scatters.validate_int:0:1]: job id: projects/broad-dsde-cromwell-dev/operations/10904609203275886423 |
|
2018-08-11 03:04:01,125 cromwell-system-akka.dispatchers.backend-dispatcher-95 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(45af4273)ifs_in_scatters.validate_int:3:1]: job id: projects/broad-dsde-cromwell-dev/operations/11950926058192587168 |
|
2018-08-11 03:04:01,196 cromwell-system-akka.dispatchers.backend-dispatcher-81 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(26d179c7)cacheWithinWF.one:NA:1]: job id: projects/broad-dsde-cromwell-dev/operations/12333716053210883462 |
|
2018-08-11 03:04:01,671 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowExecutionActor-a2d48a30-a2d8-466f-9b5c-524998b51391 [UUID(a2d48a30)]: Starting I_hope_nobody_names_workflows_like_this_as_it_seems_very_unnecessary_.my_task_aliased |
|
2018-08-11 03:04:02,211 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowExecutionActor-c29e23a5-326d-4527-acee-75f831bfcc7d [UUID(c29e23a5)]: Starting echo_wf.echo |
|
2018-08-11 03:04:02,260 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowExecutionActor-224c1de6-3524-4568-9f2a-7e254ce0348d [UUID(224c1de6)]: Starting interpolatedStrings |
|
2018-08-11 03:04:03,032 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowExecutionActor-7269bc5a-c965-45e3-9c16-51fcb0e0d714 [UUID(7269bc5a)]: Starting draft3_call_cache_capoeira.make_files |
|
2018-08-11 03:04:03,162 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowExecutionActor-c0cc1872-5be8-43aa-b059-6d154162648b [UUID(c0cc1872)]: Starting file_outputs_from_input_wf.file_outputs_from_input |
|
2018-08-11 03:04:04,160 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - fa2c07dd-a885-431c-9263-b5c6d3ed9799-SubWorkflowActor-SubWorkflow-foo_wf:-1:1 [UUID(fa2c07dd)]: Starting foo_wf.add5 |
|
2018-08-11 03:04:04,960 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - c1865d4c-f712-44e7-840d-d961eb5fab81-SubWorkflowActor-SubWorkflow-wf_hello:-1:1 [UUID(c1865d4c)]: Starting wf_hello.hello |
|
…[32m- should successfully run draft3_http_imports (15 seconds, 84 milliseconds)[0m |
|
Aug 11, 2018 3:04:12 AM com.google.api.client.http.HttpRequest execute |
|
WARNING: exception thrown while executing request |
|
java.net.SocketTimeoutException: connect timed out |
|
at java.net.PlainSocketImpl.socketConnect(Native Method) |
|
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350) |
|
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206) |
|
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188) |
|
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392) |
|
at java.net.Socket.connect(Socket.java:589) |
|
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673) |
|
at sun.net.NetworkClient.doConnect(NetworkClient.java:175) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558) |
|
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264) |
|
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291) |
|
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250) |
|
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981) |
|
at com.google.auth.oauth2.ServiceAccountCredentials.refreshAccessToken(ServiceAccountCredentials.java:378) |
|
at com.google.auth.oauth2.OAuth2Credentials.refresh(OAuth2Credentials.java:160) |
|
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode.$anonfun$credentialValidation$1(GoogleAuthMode.scala:112) |
|
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode.$anonfun$credentialValidation$1$adapted(GoogleAuthMode.scala:112) |
|
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode.$anonfun$validateCredential$1(GoogleAuthMode.scala:115) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.util.Try$.apply(Try.scala:209) |
|
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode.validateCredential(GoogleAuthMode.scala:115) |
|
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode.validateCredential$(GoogleAuthMode.scala:114) |
|
at cromwell.cloudsupport.gcp.auth.ServiceAccountMode.validateCredential(GoogleAuthMode.scala:150) |
|
at cromwell.cloudsupport.gcp.auth.ServiceAccountMode._credential$lzycompute(GoogleAuthMode.scala:169) |
|
at cromwell.cloudsupport.gcp.auth.ServiceAccountMode._credential(GoogleAuthMode.scala:158) |
|
at cromwell.cloudsupport.gcp.auth.ServiceAccountMode.credential(GoogleAuthMode.scala:172) |
|
at cromwell.filesystems.gcs.GoogleUtil$EnhancedGoogleAuthMode$.credential$1(GoogleUtil.scala:33) |
|
at cromwell.filesystems.gcs.GoogleUtil$EnhancedGoogleAuthMode$.$anonfun$retryCredential$4(GoogleUtil.scala:49) |
|
at scala.concurrent.Future$.$anonfun$apply$1(Future.scala:654) |
|
at scala.util.Success.$anonfun$map$1(Try.scala:251) |
|
at scala.util.Success.map(Try.scala:209) |
|
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288) |
|
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29) |
|
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
|
|
2018-08-11 03:04:13,491 cromwell-system-akka.dispatchers.engine-dispatcher-6 ERROR - WorkflowManagerActor Workflow 6bd00416-4477-42d8-8ad9-6f8104a6b9b0 failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out |
|
at java.net.PlainSocketImpl.socketConnect(Native Method) |
|
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350) |
|
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206) |
|
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188) |
|
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392) |
|
at java.net.Socket.connect(Socket.java:589) |
|
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673) |
|
at sun.net.NetworkClient.doConnect(NetworkClient.java:175) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558) |
|
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264) |
|
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291) |
|
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250) |
|
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469) |
|
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101) |
|
at scala.Option.map(Option.scala:146) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121) |
|
at scala.util.Success.$anonfun$map$1(Try.scala:251) |
|
at scala.util.Success.map(Try.scala:209) |
|
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288) |
|
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29) |
|
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
|
|
2018-08-11 03:04:13,492 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor WorkflowActor-6bd00416-4477-42d8-8ad9-6f8104a6b9b0 is in a terminal state: WorkflowFailedState |
|
2018-08-11 03:04:13,512 cromwell-system-akka.dispatchers.backend-dispatcher-73 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(7269bc5a)draft3_call_cache_capoeira.make_files:NA:1]: `# Comment to change hash from d2 capoeira |
|
echo bananeira > bananeira.txt |
|
echo balanca > balanca.txt` |
|
2018-08-11 03:04:13,538 cromwell-system-akka.dispatchers.engine-dispatcher-25 ERROR - WorkflowManagerActor Workflow 888d0319-3bb4-422c-b4ec-ad5c23729330 failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out |
|
at java.net.PlainSocketImpl.socketConnect(Native Method) |
|
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350) |
|
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206) |
|
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188) |
|
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392) |
|
at java.net.Socket.connect(Socket.java:589) |
|
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673) |
|
at sun.net.NetworkClient.doConnect(NetworkClient.java:175) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558) |
|
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264) |
|
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291) |
|
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250) |
|
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469) |
|
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101) |
|
at scala.Option.map(Option.scala:146) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121) |
|
at scala.util.Success.$anonfun$map$1(Try.scala:251) |
|
at scala.util.Success.map(Try.scala:209) |
|
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288) |
|
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29) |
|
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
|
|
2018-08-11 03:04:13,541 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowManagerActor WorkflowActor-888d0319-3bb4-422c-b4ec-ad5c23729330 is in a terminal state: WorkflowFailedState |
|
2018-08-11 03:04:14,500 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowExecutionActor-8f4fec30-a485-4bcf-968e-565012cc9eb9 [UUID(8f4fec30)]: Starting prefix.pfx |
|
2018-08-11 03:04:15,431 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowExecutionActor-5b027489-94b7-4705-a43c-e68ff1e0ef52 [UUID(5b027489)]: Starting array_io.serialize |
|
2018-08-11 03:04:16,266 ERROR - Test 'successfully run hello_cwl' with workflow id '6bd00416-4477-42d8-8ad9-6f8104a6b9b0' failed on attempt 1 of 3 |
|
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded |
|
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181) |
|
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138) |
|
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304) |
|
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125) |
|
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70) |
|
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43) |
|
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44) |
|
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284) |
|
at scala.concurrent.Promise.complete(Promise.scala:49) |
|
at scala.concurrent.Promise.complete$(Promise.scala:48) |
|
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183) |
|
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
2018-08-11 03:04:16,295 cromwell-system-akka.dispatchers.api-dispatcher-68 INFO - CWL (v1.0) workflow 4045c6cf-7886-4c5b-b4ee-de418b52c5e0 submitted |
|
2018-08-11 03:04:17,472 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowExecutionActor-5b027489-94b7-4705-a43c-e68ff1e0ef52 [UUID(5b027489)]: Starting array_io.mk_file (3 shards) |
|
[32m- should successfully run draft3_nested_scatter (55 seconds, 111 milliseconds)[0m |
|
[32m- should fail during execution invalid_wdl (5 seconds, 87 milliseconds)[0m |
|
2018-08-11 03:04:18,978 ERROR - Test 'successfully run three_step_cwl' with workflow id '888d0319-3bb4-422c-b4ec-ad5c23729330' failed on attempt 1 of 3 |
|
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded |
|
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181) |
|
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138) |
|
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304) |
|
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125) |
|
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70) |
|
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43) |
|
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44) |
|
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284) |
|
at scala.concurrent.Promise.complete(Promise.scala:49) |
|
at scala.concurrent.Promise.complete$(Promise.scala:48) |
|
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183) |
|
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
2018-08-11 03:04:19,003 cromwell-system-akka.dispatchers.api-dispatcher-64 INFO - CWL (v1.0) workflow e237159a-ed02-4493-9dc3-d6dad533a21c submitted |
|
[32m- should fail to submit invalid_labels (21 seconds, 71 milliseconds)[0m |
|
2018-08-11 03:04:21,643 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowExecutionActor-8afdcac0-73fb-40c8-b234-594ab8972f1f [UUID(8afdcac0)]: Starting local_gcs.makeGcsFileInJes |
|
2018-08-11 03:04:22,351 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowExecutionActor-848807ee-0436-4356-aece-177756972877 [UUID(848807ee)]: Starting dont_cache_to_failed_jobs.failing_task |
|
2018-08-11 03:04:24,808 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - 8 new workflows fetched |
|
2018-08-11 03:04:24,808 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Starting workflow UUID(d18fbada-0555-4e80-a08e-bcc4d4d9ba8d) |
|
2018-08-11 03:04:24,809 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Successfully started WorkflowActor-d18fbada-0555-4e80-a08e-bcc4d4d9ba8d |
|
2018-08-11 03:04:24,809 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Starting workflow UUID(2d13b86b-b39f-4bd1-bbbc-861fe998bf3b) |
|
2018-08-11 03:04:24,809 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Successfully started WorkflowActor-2d13b86b-b39f-4bd1-bbbc-861fe998bf3b |
|
2018-08-11 03:04:24,809 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Starting workflow UUID(eb2bbf62-e6c4-4864-a109-55b70b728ff0) |
|
2018-08-11 03:04:24,809 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Successfully started WorkflowActor-eb2bbf62-e6c4-4864-a109-55b70b728ff0 |
|
2018-08-11 03:04:24,809 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Starting workflow UUID(f019fed2-8f38-449b-8871-3b2a6331a780) |
|
2018-08-11 03:04:24,809 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Successfully started WorkflowActor-f019fed2-8f38-449b-8871-3b2a6331a780 |
|
2018-08-11 03:04:24,809 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Starting workflow UUID(8d1c0d0f-33bb-449c-b0dc-53b1d60c42df) |
|
2018-08-11 03:04:24,809 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Successfully started WorkflowActor-8d1c0d0f-33bb-449c-b0dc-53b1d60c42df |
|
2018-08-11 03:04:24,809 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Starting workflow UUID(8a56905f-5f6e-4eb1-b445-0c032ec6ee37) |
|
2018-08-11 03:04:24,809 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Successfully started WorkflowActor-8a56905f-5f6e-4eb1-b445-0c032ec6ee37 |
|
2018-08-11 03:04:24,809 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Starting workflow UUID(4045c6cf-7886-4c5b-b4ee-de418b52c5e0) |
|
2018-08-11 03:04:24,809 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Successfully started WorkflowActor-4045c6cf-7886-4c5b-b4ee-de418b52c5e0 |
|
2018-08-11 03:04:24,813 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Starting workflow UUID(e237159a-ed02-4493-9dc3-d6dad533a21c) |
|
2018-08-11 03:04:24,814 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Successfully started WorkflowActor-e237159a-ed02-4493-9dc3-d6dad533a21c |
|
2018-08-11 03:04:24,814 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - Retrieved 8 workflows from the WorkflowStoreActor |
|
[32m- should successfully run draft3_nested_struct (55 seconds, 102 milliseconds)[0m |
|
2018-08-11 03:04:32,867 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(d18fbada)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:04:32,867 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - MaterializeWorkflowDescriptorActor [UUID(eb2bbf62)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:04:32,867 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor WorkflowActor-03623b51-49d1-4dd1-a156-75c8afdb3ba3 is in a terminal state: WorkflowSucceededState |
|
2018-08-11 03:04:32,909 cromwell-system-akka.dispatchers.engine-dispatcher-25 ERROR - WorkflowManagerActor Workflow d18fbada-0555-4e80-a08e-bcc4d4d9ba8d failed (during MaterializingWorkflowDescriptorState): cromwell.engine.workflow.lifecycle.materialization.MaterializeWorkflowDescriptorActor$$anon$1: Workflow input processing failed: |
|
ERROR: Call supplied an unexpected input: The 'hello_task' task doesn't have an input called 'asdf': |
|
|
|
asdf=foo |
|
^ |
|
|
|
Options: |
|
- Add the input 'asdf' to the 'hello_task' task (defined on line 3). |
|
- Remove 'asdf = ...' from hello_task's inputs (on line 36). |
|
|
|
at cromwell.engine.workflow.lifecycle.materialization.MaterializeWorkflowDescriptorActor.cromwell$engine$workflow$lifecycle$materialization$MaterializeWorkflowDescriptorActor$$workflowInitializationFailed(MaterializeWorkflowDescriptorActor.scala:209) |
|
at cromwell.engine.workflow.lifecycle.materialization.MaterializeWorkflowDescriptorActor$$anonfun$2.applyOrElse(MaterializeWorkflowDescriptorActor.scala:179) |
|
at cromwell.engine.workflow.lifecycle.materialization.MaterializeWorkflowDescriptorActor$$anonfun$2.applyOrElse(MaterializeWorkflowDescriptorActor.scala:174) |
|
at scala.runtime.AbstractPartialFunction.apply(AbstractPartialFunction.scala:34) |
|
at akka.actor.FSM.processEvent(FSM.scala:670) |
|
at akka.actor.FSM.processEvent$(FSM.scala:667) |
|
at cromwell.engine.workflow.lifecycle.materialization.MaterializeWorkflowDescriptorActor.akka$actor$LoggingFSM$$super$processEvent(MaterializeWorkflowDescriptorActor.scala:132) |
|
at akka.actor.LoggingFSM.processEvent(FSM.scala:806) |
|
at akka.actor.LoggingFSM.processEvent$(FSM.scala:788) |
|
at cromwell.engine.workflow.lifecycle.materialization.MaterializeWorkflowDescriptorActor.processEvent(MaterializeWorkflowDescriptorActor.scala:132) |
|
at akka.actor.FSM.akka$actor$FSM$$processMsg(FSM.scala:664) |
|
at akka.actor.FSM$$anonfun$receive$1.applyOrElse(FSM.scala:658) |
|
at akka.actor.Actor.aroundReceive(Actor.scala:517) |
|
at akka.actor.Actor.aroundReceive$(Actor.scala:515) |
|
at cromwell.engine.workflow.lifecycle.materialization.MaterializeWorkflowDescriptorActor.aroundReceive(MaterializeWorkflowDescriptorActor.scala:132) |
|
at akka.actor.ActorCell.receiveMessage(ActorCell.scala:588) |
|
at akka.actor.ActorCell.invoke(ActorCell.scala:557) |
|
at akka.dispatch.Mailbox.processMailbox(Mailbox.scala:258) |
|
at akka.dispatch.Mailbox.run(Mailbox.scala:225) |
|
at akka.dispatch.Mailbox.exec(Mailbox.scala:235) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
|
|
2018-08-11 03:04:32,909 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor WorkflowActor-d18fbada-0555-4e80-a08e-bcc4d4d9ba8d is in a terminal state: WorkflowFailedState |
|
2018-08-11 03:04:32,923 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - MaterializeWorkflowDescriptorActor [UUID(eb2bbf62)]: Call-to-Backend assignments: wf_hello.hello -> Papi |
|
2018-08-11 03:04:32,951 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - MaterializeWorkflowDescriptorActor [UUID(4045c6cf)]: Parsing workflow as CWL v1.0 |
|
2018-08-11 03:04:32,951 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(f019fed2)]: Parsing workflow as WDL 1.0 |
|
2018-08-11 03:04:32,957 INFO - Pre-Processing /tmp/4045c6cf-7886-4c5b-b4ee-de418b52c5e0.temp.6346354821750737270/4045c6cf-7886-4c5b-b4ee-de418b52c5e0.cwl |
|
2018-08-11 03:04:32,978 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(f019fed2)]: Call-to-Backend assignments: |
|
2018-08-11 03:04:33,045 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowManagerActor WorkflowActor-af95ce90-ac96-4235-8254-98dd5f53878d is in a terminal state: WorkflowSucceededState |
|
2018-08-11 03:04:33,152 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(8d1c0d0f)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:04:33,192 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(e237159a)]: Parsing workflow as CWL v1.0 |
|
2018-08-11 03:04:33,199 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(8d1c0d0f)]: Call-to-Backend assignments: docker_hash_dockerhub.dockerWithoutHost -> Papi, docker_hash_dockerhub.defaultRegistryHost -> Papi, docker_hash_dockerhub.implicitRegistryHost -> Papi |
|
2018-08-11 03:04:33,204 INFO - Pre-Processing /tmp/e237159a-ed02-4493-9dc3-d6dad533a21c.temp.8917872141437228228/e237159a-ed02-4493-9dc3-d6dad533a21c.cwl |
|
2018-08-11 03:04:33,265 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - MaterializeWorkflowDescriptorActor [UUID(2d13b86b)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:04:33,299 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - MaterializeWorkflowDescriptorActor [UUID(2d13b86b)]: Call-to-Backend assignments: retry_for_me.broken_task -> Papi |
|
2018-08-11 03:04:33,322 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(8a56905f)]: Parsing workflow as WDL Biscayne |
|
2018-08-11 03:04:33,398 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(8a56905f)]: Call-to-Backend assignments: default_default.default_default_task -> Papi |
|
2018-08-11 03:04:33,730 cromwell-system-akka.actor.default-dispatcher-28 INFO - Message [akka.actor.TimerSchedulerImpl$TimerMsg] without sender to Actor[akka://cromwell-system/user/cromwell-service/WorkflowManagerActor/WorkflowActor-888d0319-3bb4-422c-b4ec-ad5c23729330#-1985832472] was not delivered. [1] dead letters encountered, no more dead letters will be logged. If this is not an expected behavior, then [Actor[akka://cromwell-system/user/cromwell-service/WorkflowManagerActor/WorkflowActor-888d0319-3bb4-422c-b4ec-ad5c23729330#-1985832472]] may have terminated unexpectedly, This logging can be turned off or adjusted with configuration settings 'akka.log-dead-letters' and 'akka.log-dead-letters-during-shutdown'. |
|
[32m- should successfully run draft3_infer_version (55 seconds, 134 milliseconds)[0m |
|
2018-08-11 03:04:35,401 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - MaterializeWorkflowDescriptorActor [UUID(4045c6cf)]: Call-to-Backend assignments: hello -> Papi |
|
2018-08-11 03:04:35,431 cromwell-system-akka.dispatchers.engine-dispatcher-31 ERROR - WorkflowManagerActor Workflow e1d30b20-1660-4ed6-93df-6455c2ca6573 failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out |
|
at java.net.PlainSocketImpl.socketConnect(Native Method) |
|
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350) |
|
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206) |
|
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188) |
|
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392) |
|
at java.net.Socket.connect(Socket.java:589) |
|
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673) |
|
at sun.net.NetworkClient.doConnect(NetworkClient.java:175) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558) |
|
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264) |
|
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291) |
|
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250) |
|
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981) |
|
at com.google.api.client.auth.oauth2.TokenRequest.executeUnparsed(TokenRequest.java:283) |
|
at com.google.api.client.auth.oauth2.TokenRequest.execute(TokenRequest.java:307) |
|
at com.google.api.client.googleapis.auth.oauth2.GoogleCredential.executeRefreshToken(GoogleCredential.java:394) |
|
at com.google.api.client.auth.oauth2.Credential.refreshToken(Credential.java:489) |
|
at com.google.api.client.auth.oauth2.Credential.intercept(Credential.java:217) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:868) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469) |
|
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101) |
|
at scala.Option.map(Option.scala:146) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121) |
|
at scala.util.Success.$anonfun$map$1(Try.scala:251) |
|
at scala.util.Success.map(Try.scala:209) |
|
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288) |
|
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29) |
|
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
|
|
2018-08-11 03:04:35,497 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor WorkflowActor-e1d30b20-1660-4ed6-93df-6455c2ca6573 is in a terminal state: WorkflowFailedState |
|
2018-08-11 03:04:35,582 cromwell-system-akka.dispatchers.backend-dispatcher-43 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(5b027489)array_io.mk_file:2:1]: `echo "file-2" > i` |
|
2018-08-11 03:04:35,647 cromwell-system-akka.dispatchers.backend-dispatcher-75 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(8f4fec30)prefix.pfx:NA:1]: `echo "-e k1=v1 -e k2=v2 -e k3=v3"` |
|
2018-08-11 03:04:35,780 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowExecutionActor-6648fdb1-fdf1-4996-82c5-4b8ef24674a7 [UUID(6648fdb1)]: Starting curl_wf.newsgrab |
|
2018-08-11 03:04:35,812 cromwell-system-akka.dispatchers.backend-dispatcher-76 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(a2d48a30)I_hope_nobody_names_workflows_like_this_as_it_seems_very_unnecessary_.my_task_aliased:NA:1]: `sleep 1` |
|
2018-08-11 03:04:36,092 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(e237159a)]: Call-to-Backend assignments: wc -> Papi, ps -> Papi, cgrep -> Papi |
|
2018-08-11 03:04:36,126 cromwell-system-akka.dispatchers.engine-dispatcher-31 ERROR - WorkflowManagerActor Workflow d017c0dd-f210-431f-907a-a2b7b899101b failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out |
|
at java.net.PlainSocketImpl.socketConnect(Native Method) |
|
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350) |
|
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206) |
|
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188) |
|
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392) |
|
at java.net.Socket.connect(Socket.java:589) |
|
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673) |
|
at sun.net.NetworkClient.doConnect(NetworkClient.java:175) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558) |
|
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264) |
|
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291) |
|
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250) |
|
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981) |
|
at com.google.api.client.auth.oauth2.TokenRequest.executeUnparsed(TokenRequest.java:283) |
|
at com.google.api.client.auth.oauth2.TokenRequest.execute(TokenRequest.java:307) |
|
at com.google.api.client.googleapis.auth.oauth2.GoogleCredential.executeRefreshToken(GoogleCredential.java:394) |
|
at com.google.api.client.auth.oauth2.Credential.refreshToken(Credential.java:489) |
|
at com.google.api.client.auth.oauth2.Credential.intercept(Credential.java:217) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:868) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469) |
|
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101) |
|
at scala.Option.map(Option.scala:146) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121) |
|
at scala.util.Success.$anonfun$map$1(Try.scala:251) |
|
at scala.util.Success.map(Try.scala:209) |
|
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288) |
|
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29) |
|
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
|
|
2018-08-11 03:04:36,147 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor WorkflowActor-d017c0dd-f210-431f-907a-a2b7b899101b is in a terminal state: WorkflowFailedState |
|
2018-08-11 03:04:36,176 cromwell-system-akka.dispatchers.backend-dispatcher-71 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(848807ee)dont_cache_to_failed_jobs.failing_task:NA:1]: `# C'est nul ! |
|
exit 1` |
|
2018-08-11 03:04:36,350 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowExecutionActor-e7ee3d80-1371-462a-b9e4-7f47b3d3e72a [UUID(e7ee3d80)]: Starting invalidate_bad_caches.make_file |
|
2018-08-11 03:04:36,356 cromwell-system-akka.dispatchers.backend-dispatcher-93 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(5b027489)array_io.mk_file:1:1]: `echo "file-1" > i` |
|
2018-08-11 03:04:36,460 cromwell-system-akka.dispatchers.backend-dispatcher-82 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(fa2c07dd)foo_wf.add5:NA:1]: `echo $((5 + 100))` |
|
2018-08-11 03:04:36,550 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowExecutionActor-12075b5a-0b94-4d41-9c8d-a7296ca9c123 [UUID(12075b5a)]: Starting optional_declarations.strings2 |
|
2018-08-11 03:04:36,592 cromwell-system-akka.dispatchers.engine-dispatcher-30 ERROR - WorkflowManagerActor Workflow 35961b0c-6e06-4d55-8dac-6f62ccea217b failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out |
|
at java.net.PlainSocketImpl.socketConnect(Native Method) |
|
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350) |
|
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206) |
|
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188) |
|
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392) |
|
at java.net.Socket.connect(Socket.java:589) |
|
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673) |
|
at sun.net.NetworkClient.doConnect(NetworkClient.java:175) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558) |
|
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264) |
|
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291) |
|
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250) |
|
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981) |
|
at com.google.api.client.auth.oauth2.TokenRequest.executeUnparsed(TokenRequest.java:283) |
|
at com.google.api.client.auth.oauth2.TokenRequest.execute(TokenRequest.java:307) |
|
at com.google.api.client.googleapis.auth.oauth2.GoogleCredential.executeRefreshToken(GoogleCredential.java:394) |
|
at com.google.api.client.auth.oauth2.Credential.refreshToken(Credential.java:489) |
|
at com.google.api.client.auth.oauth2.Credential.intercept(Credential.java:217) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:868) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469) |
|
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101) |
|
at scala.Option.map(Option.scala:146) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121) |
|
at scala.util.Success.$anonfun$map$1(Try.scala:251) |
|
at scala.util.Success.map(Try.scala:209) |
|
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288) |
|
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29) |
|
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
|
|
2018-08-11 03:04:36,593 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor WorkflowActor-35961b0c-6e06-4d55-8dac-6f62ccea217b is in a terminal state: WorkflowFailedState |
|
2018-08-11 03:04:36,620 cromwell-system-akka.dispatchers.backend-dispatcher-88 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(7f63eea1)cont_while_possible_scatter.odd_numbers_only:1:1]: `if [ $((1%2)) -eq 0 ]; then |
|
exit 1; |
|
fi` |
|
2018-08-11 03:04:36,668 cromwell-system-akka.dispatchers.backend-dispatcher-88 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(7f63eea1)cont_while_possible_scatter.odd_numbers_only:0:1]: `if [ $((0%2)) -eq 0 ]; then |
|
exit 1; |
|
fi` |
|
2018-08-11 03:04:36,684 cromwell-system-akka.dispatchers.backend-dispatcher-88 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(7f63eea1)cont_while_possible_scatter.odd_numbers_only:2:1]: `if [ $((2%2)) -eq 0 ]; then |
|
exit 1; |
|
fi` |
|
2018-08-11 03:04:36,803 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowExecutionActor-4c8e6262-97b0-44ce-9c03-88729f6d29b8 [UUID(4c8e6262)]: Starting wf.read_map |
|
2018-08-11 03:04:36,830 cromwell-system-akka.dispatchers.backend-dispatcher-93 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(5b027489)array_io.mk_file:0:1]: `echo "file-0" > i` |
|
2018-08-11 03:04:36,850 cromwell-system-akka.dispatchers.backend-dispatcher-93 WARN - PipelinesApiAsyncBackendJobExecutionActor [UUID(e7ee3d80)invalidate_bad_caches.make_file:NA:1]: Unrecognized runtime attribute keys: backend |
|
2018-08-11 03:04:36,860 cromwell-system-akka.dispatchers.backend-dispatcher-93 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(e7ee3d80)invalidate_bad_caches.make_file:NA:1]: `echo woohoo > out.txt` |
|
2018-08-11 03:04:36,890 cromwell-system-akka.dispatchers.backend-dispatcher-88 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(6de9f48d)restart_while_failing.B:NA:1]: Status change from - to Success |
|
2018-08-11 03:04:36,904 cromwell-system-akka.dispatchers.backend-dispatcher-76 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(45af4273)ifs_in_scatters.validate_int:0:1]: Status change from - to Running |
|
2018-08-11 03:04:36,914 cromwell-system-akka.dispatchers.backend-dispatcher-88 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(c0cc1872)file_outputs_from_input_wf.file_outputs_from_input:NA:1]: `echo "foo" > ___something___ |
|
echo "bar" > ___anything___ |
|
echo "baz" > ___nothing___.txt` |
|
2018-08-11 03:04:36,936 cromwell-system-akka.dispatchers.backend-dispatcher-76 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(45af4273)ifs_in_scatters.validate_int:3:1]: Status change from - to Running |
|
2018-08-11 03:04:36,998 cromwell-system-akka.dispatchers.backend-dispatcher-93 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(12075b5a)optional_declarations.strings2:NA:1]: `# no-op` |
|
2018-08-11 03:04:37,022 cromwell-system-akka.dispatchers.backend-dispatcher-93 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(c1865d4c)wf_hello.hello:NA:1]: `echo "Hello sub world!"` |
|
2018-08-11 03:04:37,044 cromwell-system-akka.dispatchers.backend-dispatcher-88 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(8afdcac0)local_gcs.makeGcsFileInJes:NA:1]: `echo "I am writing stuff" > out` |
|
2018-08-11 03:04:37,071 cromwell-system-akka.dispatchers.backend-dispatcher-88 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(c29e23a5)echo_wf.echo:NA:1]: `echo "world" > foobar.txt |
|
echo "2" > 2.txt` |
|
2018-08-11 03:04:37,141 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowExecutionActor-05f3189b-60be-4251-a662-4a7130e3db57 [UUID(05f3189b)]: Starting iwdr_input_string |
|
2018-08-11 03:04:37,318 cromwell-system-akka.dispatchers.api-dispatcher-65 INFO - WDL (1.0) workflow 1cb1da13-e8cb-4944-ba85-28bf36a6b208 submitted |
|
2018-08-11 03:04:37,390 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - 1 new workflows fetched |
|
2018-08-11 03:04:37,390 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor Starting workflow UUID(1cb1da13-e8cb-4944-ba85-28bf36a6b208) |
|
2018-08-11 03:04:37,390 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor Successfully started WorkflowActor-1cb1da13-e8cb-4944-ba85-28bf36a6b208 |
|
2018-08-11 03:04:37,390 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - Retrieved 1 workflows from the WorkflowStoreActor |
|
2018-08-11 03:04:37,430 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowExecutionActor-509baaba-9260-416c-9ee9-b3dc29276eb3 [UUID(509baaba)]: Starting struct_localize_delocalize.struct_delocalize |
|
2018-08-11 03:04:37,541 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowExecutionActor-7c349a44-4eca-448d-9a02-114da3e0cd45 [UUID(7c349a44)]: Starting callable_imports.my_task |
|
2018-08-11 03:04:37,582 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowExecutionActor-12075b5a-0b94-4d41-9c8d-a7296ca9c123 [UUID(12075b5a)]: Starting optional_declarations.strings |
|
2018-08-11 03:04:37,594 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(1cb1da13)]: Parsing workflow as WDL 1.0 |
|
2018-08-11 03:04:37,601 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowExecutionActor-180d67b5-fabb-480f-8676-d2eea500799b [UUID(180d67b5)]: Starting writeToCache.print |
|
2018-08-11 03:04:37,601 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowExecutionActor-4ce7acb7-1ae4-462d-a95e-ffec8e13ace8 [UUID(4ce7acb7)]: Starting floating_tags.echo, floating_tags.echoAgain |
|
2018-08-11 03:04:37,690 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(1cb1da13)]: Call-to-Backend assignments: draft3_size_of_optionals.size_in_task_places -> Papi, draft3_size_of_optionals.scattered_conditional_file_making -> Papi, draft3_size_of_optionals.dont_make_a_file -> Papi, draft3_size_of_optionals.make_a_file -> Papi |
|
2018-08-11 03:04:37,730 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowExecutionActor-91d6d48d-3a01-4ce3-ac67-f6b6f22a059c [UUID(91d6d48d)]: Starting foo_wf.add5 |
|
2018-08-11 03:04:37,812 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowExecutionActor-6508de0e-3a2a-41fa-9b02-b92212090765 [UUID(6508de0e)]: Starting gpu_on_papi.task_with_tesla_p100, gpu_on_papi.task_with_tesla_k80 |
|
2018-08-11 03:04:37,820 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowExecutionActor-4c8e6262-97b0-44ce-9c03-88729f6d29b8 [UUID(4c8e6262)]: Starting wf.write_map |
|
2018-08-11 03:04:37,840 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowExecutionActor-f2920645-5e3b-4310-825c-50f1225cf9b7 [UUID(f2920645)]: Starting cwl-cache-between-workflows.step-average |
|
2018-08-11 03:04:37,850 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowExecutionActor-6dff21b8-2de9-4cd4-94a7-3217ea2dade1 [UUID(6dff21b8)]: Starting draft3_omitting_outputs.foo |
|
2018-08-11 03:04:38,071 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowExecutionActor-f019fed2-8f38-449b-8871-3b2a6331a780 [UUID(f019fed2)]: Workflow declaration_chain complete. Final Outputs: |
|
{ |
|
"declaration_chain.z": 5 |
|
} |
|
2018-08-11 03:04:38,160 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowExecutionActor-970888c3-bda2-4314-9f29-97b938e0da7b [UUID(970888c3)]: Starting array_literal_locations.array_literal_locations_i |
|
2018-08-11 03:04:38,201 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowExecutionActor-3e3717bf-63ed-4398-a812-6236dc6a5c9d [UUID(3e3717bf)]: Condition NOT met: 'false'. Bypassing conditional section |
|
2018-08-11 03:04:38,201 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowExecutionActor-17529c55-58df-45ff-bd0b-b100d1d903b9 [UUID(17529c55)]: Starting custom_mount_point.t |
|
2018-08-11 03:04:38,201 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowExecutionActor-3e3717bf-63ed-4398-a812-6236dc6a5c9d [UUID(3e3717bf)]: Condition met: 'true'. Running conditional section |
|
2018-08-11 03:04:38,201 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowExecutionActor-b3b9e784-da75-4ce1-a627-40eaeb4a0c65 [UUID(b3b9e784)]: Starting optional_declarations.strings |
|
2018-08-11 03:04:38,310 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowExecutionActor-57af2395-af84-4d67-9146-27bd93d745f9 [UUID(57af2395)]: Starting cwl-cache-within-workflow.foo |
|
2018-08-11 03:04:38,470 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowExecutionActor-468f5a17-28ba-48a3-b3cc-61a3d1ab7fe3 [UUID(468f5a17)]: Condition met: 'true'. Running conditional section |
|
2018-08-11 03:04:38,472 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowExecutionActor-468f5a17-28ba-48a3-b3cc-61a3d1ab7fe3 [UUID(468f5a17)]: Condition NOT met: 'false'. Bypassing conditional section |
|
2018-08-11 03:04:38,510 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowExecutionActor-1522d1c5-a39b-4ad6-a2a2-4291d4b968e1 [UUID(1522d1c5)]: Starting test.echo_str |
|
2018-08-11 03:04:38,623 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - WorkflowManagerActor WorkflowActor-f019fed2-8f38-449b-8871-3b2a6331a780 is in a terminal state: WorkflowSucceededState |
|
2018-08-11 03:04:38,750 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - MaterializeWorkflowDescriptorActor [UUID(cd413a7b)]: Call-to-Backend assignments: |
|
2018-08-11 03:04:38,870 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowExecutionActor-6dff21b8-2de9-4cd4-94a7-3217ea2dade1 [UUID(6dff21b8)]: Condition met: 'true'. Running conditional section |
|
2018-08-11 03:04:39,401 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowExecutionActor-d224abcb-8f46-4c3d-b78d-af3614e67e64 [UUID(d224abcb)]: Starting sizeenginefunction.make_a_file (3 shards) |
|
2018-08-11 03:04:39,490 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowExecutionActor-468f5a17-28ba-48a3-b3cc-61a3d1ab7fe3 [UUID(468f5a17)]: Starting simple_if.runMeTrue |
|
2018-08-11 03:04:39,641 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowExecutionActor-df597859-2612-4fb7-acc2-40bfef9dfe69 [UUID(df597859)]: Starting size_wf.size_task |
|
2018-08-11 03:04:39,927 cromwell-system-akka.dispatchers.api-dispatcher-68 INFO - Unspecified type (Unspecified version) workflow 179eedca-a4f0-4362-8f01-937e31577ffd submitted |
|
2018-08-11 03:04:40,201 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowExecutionActor-970888c3-bda2-4314-9f29-97b938e0da7b [UUID(970888c3)]: Starting array_literal_locations.array_literal_locations_ii (3 shards) |
|
2018-08-11 03:04:40,389 cromwell-system-akka.dispatchers.backend-dispatcher-93 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(7f63eea1)cont_while_possible_scatter.odd_numbers_only:3:1]: `if [ $((3%2)) -eq 0 ]; then |
|
exit 1; |
|
fi` |
|
2018-08-11 03:04:40,402 cromwell-system-akka.dispatchers.backend-dispatcher-82 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(7c349a44)callable_imports.my_task:NA:1]: `echo -n "foo" | wc | awk ' { print $3 } '` |
|
2018-08-11 03:04:40,407 cromwell-system-akka.dispatchers.backend-dispatcher-93 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(91d6d48d)foo_wf.add5:NA:1]: `echo $((5 + 100))` |
|
2018-08-11 03:04:40,563 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - 1 new workflows fetched |
|
2018-08-11 03:04:40,563 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(179eedca-a4f0-4362-8f01-937e31577ffd) |
|
2018-08-11 03:04:40,564 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-179eedca-a4f0-4362-8f01-937e31577ffd |
|
2018-08-11 03:04:40,564 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - Retrieved 1 workflows from the WorkflowStoreActor |
|
2018-08-11 03:04:40,581 cromwell-system-akka.dispatchers.backend-dispatcher-75 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(12075b5a)optional_declarations.strings:NA:1]: `# no-op` |
|
2018-08-11 03:04:40,623 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - bf1364ae-769c-45c1-b2f2-5b26917f3887-SubWorkflowActor-SubWorkflow-sudecls:-1:1 [UUID(bf1364ae)]: Starting sub_decls.first_task |
|
2018-08-11 03:04:40,640 cromwell-system-akka.dispatchers.engine-dispatcher-31 ERROR - WorkflowManagerActor Workflow 08ce6481-a38f-4406-b3a1-6b44c21695dd failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out |
|
at java.net.PlainSocketImpl.socketConnect(Native Method) |
|
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350) |
|
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206) |
|
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188) |
|
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392) |
|
at java.net.Socket.connect(Socket.java:589) |
|
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673) |
|
at sun.net.NetworkClient.doConnect(NetworkClient.java:175) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558) |
|
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264) |
|
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291) |
|
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250) |
|
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981) |
|
at com.google.api.client.auth.oauth2.TokenRequest.executeUnparsed(TokenRequest.java:283) |
|
at com.google.api.client.auth.oauth2.TokenRequest.execute(TokenRequest.java:307) |
|
at com.google.api.client.googleapis.auth.oauth2.GoogleCredential.executeRefreshToken(GoogleCredential.java:394) |
|
at com.google.api.client.auth.oauth2.Credential.refreshToken(Credential.java:489) |
|
at com.google.api.client.auth.oauth2.Credential.intercept(Credential.java:217) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:868) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469) |
|
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101) |
|
at scala.Option.map(Option.scala:146) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121) |
|
at scala.util.Success.$anonfun$map$1(Try.scala:251) |
|
at scala.util.Success.map(Try.scala:209) |
|
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288) |
|
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29) |
|
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
|
|
2018-08-11 03:04:40,648 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor WorkflowActor-08ce6481-a38f-4406-b3a1-6b44c21695dd is in a terminal state: WorkflowFailedState |
|
2018-08-11 03:04:40,831 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowExecutionActor-cd413a7b-1835-4a8f-87c7-7df351a5c649 [UUID(cd413a7b)]: Workflow input_expressions complete. Final Outputs: |
|
{ |
|
"input_expressions.wf_out": 256.0 |
|
} |
|
2018-08-11 03:04:40,891 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - MaterializeWorkflowDescriptorActor [UUID(179eedca)]: Parsing workflow as WDL draft-2 |
|
2018-08-11 03:04:40,891 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor WorkflowActor-cd413a7b-1835-4a8f-87c7-7df351a5c649 is in a terminal state: WorkflowSucceededState |
|
2018-08-11 03:04:40,913 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - MaterializeWorkflowDescriptorActor [UUID(179eedca)]: Call-to-Backend assignments: wf.blah -> Papi |
|
2018-08-11 03:04:41,234 cromwell-system-akka.dispatchers.backend-dispatcher-77 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(12d310ee)iwdr_inline_file:NA:1]: `'python3' 'prime_sieve.py' '100'` |
|
2018-08-11 03:04:41,249 cromwell-system-akka.dispatchers.engine-dispatcher-34 ERROR - WorkflowManagerActor Workflow bcf2af35-0d99-4072-ab0c-5f1a64fac90b failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out |
|
at java.net.PlainSocketImpl.socketConnect(Native Method) |
|
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350) |
|
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206) |
|
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188) |
|
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392) |
|
at java.net.Socket.connect(Socket.java:589) |
|
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673) |
|
at sun.net.NetworkClient.doConnect(NetworkClient.java:175) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558) |
|
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264) |
|
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291) |
|
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250) |
|
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981) |
|
at com.google.api.client.auth.oauth2.TokenRequest.executeUnparsed(TokenRequest.java:283) |
|
at com.google.api.client.auth.oauth2.TokenRequest.execute(TokenRequest.java:307) |
|
at com.google.api.client.googleapis.auth.oauth2.GoogleCredential.executeRefreshToken(GoogleCredential.java:394) |
|
at com.google.api.client.auth.oauth2.Credential.refreshToken(Credential.java:489) |
|
at com.google.api.client.auth.oauth2.Credential.intercept(Credential.java:217) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:868) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469) |
|
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101) |
|
at scala.Option.map(Option.scala:146) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121) |
|
at scala.util.Success.$anonfun$map$1(Try.scala:251) |
|
at scala.util.Success.map(Try.scala:209) |
|
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288) |
|
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29) |
|
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
|
|
2018-08-11 03:04:41,250 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor WorkflowActor-bcf2af35-0d99-4072-ab0c-5f1a64fac90b is in a terminal state: WorkflowFailedState |
|
2018-08-11 03:04:41,264 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - 0303e48f-978e-4110-9c59-10d9002bf5ff-SubWorkflowActor-SubWorkflow-ifs_in_scatters_in_truth:-1:1 [UUID(0303e48f)]: Starting ifs_in_scatters.init |
|
2018-08-11 03:04:41,276 cromwell-system-akka.dispatchers.backend-dispatcher-93 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(d224abcb)sizeenginefunction.make_a_file:2:1]: `echo "hey look here's a file" > a_file` |
|
2018-08-11 03:04:41,446 cromwell-system-akka.dispatchers.backend-dispatcher-88 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(180d67b5)writeToCache.print:NA:1]: `echo "She sells sea shells by the sea shore only on $(date)"` |
|
2018-08-11 03:04:41,483 cromwell-system-akka.dispatchers.backend-dispatcher-82 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(970888c3)array_literal_locations.array_literal_locations_i:NA:1]: ` |
|
echo 0:1:2 > out` |
|
2018-08-11 03:04:41,511 cromwell-system-akka.dispatchers.backend-dispatcher-88 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(6648fdb1)curl_wf.newsgrab:NA:1]: `curl -# http://www.bbc.com/news > news` |
|
2018-08-11 03:04:41,519 cromwell-system-akka.dispatchers.backend-dispatcher-88 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(970888c3)array_literal_locations.array_literal_locations_ii:2:1]: ` |
|
echo 2 > out` |
|
2018-08-11 03:04:41,533 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowExecutionActor-8a56905f-5f6e-4eb1-b445-0c032ec6ee37 [UUID(8a56905f)]: Starting default_default.default_default_task |
|
2018-08-11 03:04:41,566 cromwell-system-akka.dispatchers.backend-dispatcher-77 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(6dff21b8)draft3_omitting_outputs.foo:NA:1]: `echo hi` |
|
2018-08-11 03:04:41,928 cromwell-system-akka.dispatchers.api-dispatcher-68 INFO - CWL (v1.0) workflow a98c35e2-4292-488b-9249-87f65394470e submitted |
|
2018-08-11 03:04:42,102 cromwell-system-akka.dispatchers.backend-dispatcher-82 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(1522d1c5)test.echo_str:NA:1]: ` |
|
echo bar 2 left` |
|
2018-08-11 03:04:42,192 cromwell-system-akka.dispatchers.backend-dispatcher-77 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(8610dbc7)wf_hello.hello:NA:1]: job id: projects/broad-dsde-cromwell-dev/operations/9493235542016133234 |
|
2018-08-11 03:04:42,192 cromwell-system-akka.dispatchers.backend-dispatcher-77 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(b3b9e784)optional_declarations.strings:NA:1]: `` |
|
2018-08-11 03:04:42,192 cromwell-system-akka.dispatchers.backend-dispatcher-77 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(3605344c)requester_pays_localization.localize:NA:1]: job id: projects/broad-dsde-cromwell-dev/operations/14055412535053357157 |
|
2018-08-11 03:04:42,213 cromwell-system-akka.dispatchers.backend-dispatcher-37 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(5b027489)array_io.serialize:NA:1]: `cat /cromwell_root/cloud-cromwell-dev/cromwell_execution/travis/array_io/5b027489-94b7-4705-a43c-e68ff1e0ef52/call-serialize/write_lines_745faba7cec1d9b9680daa9416a9438c.tmp` |
|
2018-08-11 03:04:42,233 cromwell-system-akka.dispatchers.backend-dispatcher-88 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(6508de0e)gpu_on_papi.task_with_tesla_k80:NA:1]: `curl "https://www.googleapis.com/compute/v1/projects/broad-dsde-cromwell-dev/zones/us-central1-c/instances/$(curl -s "http://metadata.google.internal/computeMetadata/v1/instance/name" -H "Metadata-Flavor: Google")?fields=guestAccelerators" -H "Authorization: Bearer $(gcloud auth application-default print-access-token)" -H 'Accept: application/json' --compressed` |
|
2018-08-11 03:04:42,248 cromwell-system-akka.dispatchers.backend-dispatcher-77 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(509baaba)struct_localize_delocalize.struct_delocalize:NA:1]: `echo "BAM BAM BAM BAM BAM" > test.bam |
|
echo "BAI BAI BAI BAI BAI" > test.bam.bai` |
|
2018-08-11 03:04:42,250 cromwell-system-akka.dispatchers.backend-dispatcher-77 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(17529c55)custom_mount_point.t:NA:1]: `echo "bazqux" > some_file |
|
|
|
cd /some/mnt |
|
echo "foobar" > some_file` |
|
2018-08-11 03:04:42,251 cromwell-system-akka.dispatchers.engine-dispatcher-25 ERROR - WorkflowManagerActor Workflow d3fbad9b-3fb1-4f7c-866e-cf2568ef76e5 failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out |
|
at java.net.PlainSocketImpl.socketConnect(Native Method) |
|
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350) |
|
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206) |
|
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188) |
|
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392) |
|
at java.net.Socket.connect(Socket.java:589) |
|
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673) |
|
at sun.net.NetworkClient.doConnect(NetworkClient.java:175) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558) |
|
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264) |
|
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291) |
|
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250) |
|
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469) |
|
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101) |
|
at scala.Option.map(Option.scala:146) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121) |
|
at scala.util.Success.$anonfun$map$1(Try.scala:251) |
|
at scala.util.Success.map(Try.scala:209) |
|
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288) |
|
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29) |
|
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
|
|
2018-08-11 03:04:42,252 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowManagerActor WorkflowActor-d3fbad9b-3fb1-4f7c-866e-cf2568ef76e5 is in a terminal state: WorkflowFailedState |
|
2018-08-11 03:04:42,604 ERROR - Test 'successfully run draft3_array_io' with workflow id 'e1d30b20-1660-4ed6-93df-6455c2ca6573' failed on attempt 1 of 3 |
|
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded |
|
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181) |
|
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138) |
|
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304) |
|
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125) |
|
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70) |
|
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43) |
|
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44) |
|
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284) |
|
at scala.concurrent.Promise.complete(Promise.scala:49) |
|
at scala.concurrent.Promise.complete$(Promise.scala:48) |
|
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183) |
|
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
2018-08-11 03:04:42,633 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - WDL (1.0) workflow 830ac9a6-efdb-47c2-859b-d1b7c779c1bf submitted |
|
2018-08-11 03:04:42,775 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - 2 new workflows fetched |
|
2018-08-11 03:04:42,776 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor Starting workflow UUID(a98c35e2-4292-488b-9249-87f65394470e) |
|
2018-08-11 03:04:42,776 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor Successfully started WorkflowActor-a98c35e2-4292-488b-9249-87f65394470e |
|
2018-08-11 03:04:42,776 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor Starting workflow UUID(830ac9a6-efdb-47c2-859b-d1b7c779c1bf) |
|
2018-08-11 03:04:42,781 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor Successfully started WorkflowActor-830ac9a6-efdb-47c2-859b-d1b7c779c1bf |
|
2018-08-11 03:04:42,781 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - Retrieved 2 workflows from the WorkflowStoreActor |
|
2018-08-11 03:04:42,849 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(830ac9a6)]: Parsing workflow as WDL 1.0 |
|
2018-08-11 03:04:42,852 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - MaterializeWorkflowDescriptorActor [UUID(a98c35e2)]: Parsing workflow as CWL v1.0 |
|
2018-08-11 03:04:42,852 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - ad0aad1c-e3b6-4a6c-b736-b3a349177575-SubWorkflowActor-SubWorkflow-subhello:0:1 [UUID(ad0aad1c)]: Starting subhello.hello |
|
2018-08-11 03:04:42,852 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - 0ee37b0c-2217-4361-bb7f-e828742167d1-SubWorkflowActor-SubWorkflow-subhello:2:1 [UUID(0ee37b0c)]: Starting subhello.hello |
|
2018-08-11 03:04:42,853 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - 1e699359-2f17-4d87-a9c2-b4ecb1c931e4-SubWorkflowActor-SubWorkflow-subhello:1:1 [UUID(1e699359)]: Starting subhello.hello |
|
2018-08-11 03:04:42,854 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - 34970377-04c5-4b2a-93e5-5f24b8cf15a8-SubWorkflowActor-SubWorkflow-subhello:3:1 [UUID(34970377)]: Starting subhello.hello |
|
2018-08-11 03:04:42,900 INFO - Pre-Processing /tmp/a98c35e2-4292-488b-9249-87f65394470e.temp.8880008899962316976/a98c35e2-4292-488b-9249-87f65394470e.cwl |
|
2018-08-11 03:04:42,921 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowExecutionActor-8d1c0d0f-33bb-449c-b0dc-53b1d60c42df [UUID(8d1c0d0f)]: Starting docker_hash_dockerhub.defaultRegistryHost, docker_hash_dockerhub.implicitRegistryHost, docker_hash_dockerhub.dockerWithoutHost |
|
2018-08-11 03:04:42,960 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - 7ec6d290-1450-47ca-8c65-f726397a2449-SubWorkflowActor-SubWorkflow-foo2:0:1 [UUID(7ec6d290)]: Starting foo_in_a_box.foo |
|
2018-08-11 03:04:42,980 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(830ac9a6)]: Call-to-Backend assignments: array_io.concat -> Papi, array_io.mk_file -> Papi, array_io.serialize -> Papi, array_io.count_lines_array -> Papi, array_io.count_lines -> Papi |
|
2018-08-11 03:04:43,027 cromwell-system-akka.dispatchers.engine-dispatcher-32 ERROR - Failed to hash gs://cromwell_bucket_with_requester_pays/lorem ipsum.txt |
|
com.google.cloud.storage.StorageException: centaur@broad-dsde-cromwell-dev.iam.gserviceaccount.com does not have serviceusage.services.use access to project 1005074806481. |
|
at cromwell.engine.io.gcs.GcsBatchCommandContext.cromwell$engine$io$gcs$GcsBatchCommandContext$$onFailureCallback(GcsBatchCommandContext.scala:108) |
|
at cromwell.engine.io.gcs.GcsBatchCommandContext$$anon$1.onFailure(GcsBatchCommandContext.scala:55) |
|
at com.google.api.client.googleapis.batch.json.JsonBatchCallback.onFailure(JsonBatchCallback.java:54) |
|
at com.google.api.client.googleapis.batch.json.JsonBatchCallback.onFailure(JsonBatchCallback.java:50) |
|
at com.google.api.client.googleapis.batch.BatchUnparsedResponse.parseAndCallback(BatchUnparsedResponse.java:223) |
|
at com.google.api.client.googleapis.batch.BatchUnparsedResponse.parseNextResponse(BatchUnparsedResponse.java:155) |
|
at com.google.api.client.googleapis.batch.BatchRequest.execute(BatchRequest.java:253) |
|
at cromwell.engine.io.gcs.GcsBatchFlow.$anonfun$executeBatch$3(GcsBatchFlow.scala:112) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.util.Try$.apply(Try.scala:209) |
|
at cromwell.engine.io.gcs.GcsBatchFlow.executeBatch(GcsBatchFlow.scala:112) |
|
at cromwell.engine.io.gcs.GcsBatchFlow.$anonfun$flow$2(GcsBatchFlow.scala:58) |
|
at akka.stream.impl.fusing.StatefulMapConcat$$anon$30.onPush(Ops.scala:1937) |
|
at akka.stream.impl.fusing.GraphInterpreter.processPush(GraphInterpreter.scala:519) |
|
at akka.stream.impl.fusing.GraphInterpreter.processEvent(GraphInterpreter.scala:482) |
|
at akka.stream.impl.fusing.GraphInterpreter.execute(GraphInterpreter.scala:378) |
|
at akka.stream.impl.fusing.GraphInterpreterShell.runBatch(ActorGraphInterpreter.scala:588) |
|
at akka.stream.impl.fusing.GraphInterpreterShell$AsyncInput.execute(ActorGraphInterpreter.scala:472) |
|
at akka.stream.impl.fusing.GraphInterpreterShell.processEvent(ActorGraphInterpreter.scala:563) |
|
at akka.stream.impl.fusing.ActorGraphInterpreter.akka$stream$impl$fusing$ActorGraphInterpreter$$processEvent(ActorGraphInterpreter.scala:745) |
|
at akka.stream.impl.fusing.ActorGraphInterpreter$$anonfun$receive$1.applyOrElse(ActorGraphInterpreter.scala:760) |
|
at akka.actor.Actor.aroundReceive(Actor.scala:517) |
|
at akka.actor.Actor.aroundReceive$(Actor.scala:515) |
|
at akka.stream.impl.fusing.ActorGraphInterpreter.aroundReceive(ActorGraphInterpreter.scala:670) |
|
at akka.actor.ActorCell.receiveMessage(ActorCell.scala:588) |
|
at akka.actor.ActorCell.invoke(ActorCell.scala:557) |
|
at akka.dispatch.Mailbox.processMailbox(Mailbox.scala:258) |
|
at akka.dispatch.Mailbox.run(Mailbox.scala:225) |
|
at akka.dispatch.Mailbox.exec(Mailbox.scala:235) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
2018-08-11 03:04:43,034 cromwell-system-akka.dispatchers.engine-dispatcher-32 ERROR - 3605344c:requester_pays_localization.localize:-1:1: Hash error, disabling call caching for this job. |
|
com.google.cloud.storage.StorageException: centaur@broad-dsde-cromwell-dev.iam.gserviceaccount.com does not have serviceusage.services.use access to project 1005074806481. |
|
at cromwell.engine.io.gcs.GcsBatchCommandContext.cromwell$engine$io$gcs$GcsBatchCommandContext$$onFailureCallback(GcsBatchCommandContext.scala:108) |
|
at cromwell.engine.io.gcs.GcsBatchCommandContext$$anon$1.onFailure(GcsBatchCommandContext.scala:55) |
|
at com.google.api.client.googleapis.batch.json.JsonBatchCallback.onFailure(JsonBatchCallback.java:54) |
|
at com.google.api.client.googleapis.batch.json.JsonBatchCallback.onFailure(JsonBatchCallback.java:50) |
|
at com.google.api.client.googleapis.batch.BatchUnparsedResponse.parseAndCallback(BatchUnparsedResponse.java:223) |
|
at com.google.api.client.googleapis.batch.BatchUnparsedResponse.parseNextResponse(BatchUnparsedResponse.java:155) |
|
at com.google.api.client.googleapis.batch.BatchRequest.execute(BatchRequest.java:253) |
|
at cromwell.engine.io.gcs.GcsBatchFlow.$anonfun$executeBatch$3(GcsBatchFlow.scala:112) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.util.Try$.apply(Try.scala:209) |
|
at cromwell.engine.io.gcs.GcsBatchFlow.executeBatch(GcsBatchFlow.scala:112) |
|
at cromwell.engine.io.gcs.GcsBatchFlow.$anonfun$flow$2(GcsBatchFlow.scala:58) |
|
at akka.stream.impl.fusing.StatefulMapConcat$$anon$30.onPush(Ops.scala:1937) |
|
at akka.stream.impl.fusing.GraphInterpreter.processPush(GraphInterpreter.scala:519) |
|
at akka.stream.impl.fusing.GraphInterpreter.processEvent(GraphInterpreter.scala:482) |
|
at akka.stream.impl.fusing.GraphInterpreter.execute(GraphInterpreter.scala:378) |
|
at akka.stream.impl.fusing.GraphInterpreterShell.runBatch(ActorGraphInterpreter.scala:588) |
|
at akka.stream.impl.fusing.GraphInterpreterShell$AsyncInput.execute(ActorGraphInterpreter.scala:472) |
|
at akka.stream.impl.fusing.GraphInterpreterShell.processEvent(ActorGraphInterpreter.scala:563) |
|
at akka.stream.impl.fusing.ActorGraphInterpreter.akka$stream$impl$fusing$ActorGraphInterpreter$$processEvent(ActorGraphInterpreter.scala:745) |
|
at akka.stream.impl.fusing.ActorGraphInterpreter$$anonfun$receive$1.applyOrElse(ActorGraphInterpreter.scala:760) |
|
at akka.actor.Actor.aroundReceive(Actor.scala:517) |
|
at akka.actor.Actor.aroundReceive$(Actor.scala:515) |
|
at akka.stream.impl.fusing.ActorGraphInterpreter.aroundReceive(ActorGraphInterpreter.scala:670) |
|
at akka.actor.ActorCell.receiveMessage(ActorCell.scala:588) |
|
at akka.actor.ActorCell.invoke(ActorCell.scala:557) |
|
at akka.dispatch.Mailbox.processMailbox(Mailbox.scala:258) |
|
at akka.dispatch.Mailbox.run(Mailbox.scala:225) |
|
at akka.dispatch.Mailbox.exec(Mailbox.scala:235) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
2018-08-11 03:04:43,042 cromwell-system-akka.dispatchers.backend-dispatcher-37 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(f2920645)cwl-cache-between-workflows.step-average:NA:1]: `echo 11` |
|
2018-08-11 03:04:43,062 cromwell-system-akka.dispatchers.backend-dispatcher-88 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(df597859)size_wf.size_task:NA:1]: `echo "file has size 104636.0"` |
|
2018-08-11 03:04:43,204 cromwell-system-akka.dispatchers.backend-dispatcher-37 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(4c8e6262)wf.read_map:NA:1]: `python <<CODE |
|
map = {'x': 500, 'y': 600, 'z': 700} |
|
print("\\n".join(["{}\\t{}".format(k,v) for k,v in map.items()])) |
|
CODE` |
|
2018-08-11 03:04:43,221 cromwell-system-akka.dispatchers.backend-dispatcher-88 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(d224abcb)sizeenginefunction.make_a_file:0:1]: `echo "hey look here's a file" > a_file` |
|
2018-08-11 03:04:43,227 cromwell-system-akka.dispatchers.backend-dispatcher-82 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(8a56905f)default_default.default_default_task:NA:1]: `echo "x: '' y: ''"` |
|
2018-08-11 03:04:43,238 cromwell-system-akka.dispatchers.backend-dispatcher-88 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(4ce7acb7)floating_tags.echo:NA:1]: `echo "Peter Piper picked a peck of pickled peppers"` |
|
2018-08-11 03:04:43,247 cromwell-system-akka.dispatchers.backend-dispatcher-88 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(bf1364ae)sub_decls.first_task:NA:1]: `echo foo` |
|
2018-08-11 03:04:43,309 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - 0303e48f-978e-4110-9c59-10d9002bf5ff-SubWorkflowActor-SubWorkflow-ifs_in_scatters_in_truth:-1:1 [UUID(0303e48f)]: Starting ifs_in_scatters.validate_int (5 shards) |
|
2018-08-11 03:04:43,941 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowExecutionActor-6de9f48d-48df-41b7-be56-a22257793872 [UUID(6de9f48d)]: Starting restart_while_failing.B1 |
|
2018-08-11 03:04:44,204 ERROR - Test 'successfully run draft3_globs' with workflow id '35961b0c-6e06-4d55-8dac-6f62ccea217b' failed on attempt 1 of 3 |
|
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded |
|
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181) |
|
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138) |
|
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304) |
|
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125) |
|
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70) |
|
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43) |
|
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44) |
|
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284) |
|
at scala.concurrent.Promise.complete(Promise.scala:49) |
|
at scala.concurrent.Promise.complete$(Promise.scala:48) |
|
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183) |
|
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
2018-08-11 03:04:44,230 cromwell-system-akka.dispatchers.api-dispatcher-65 INFO - WDL (1.0) workflow b36006b1-dc8c-4a0c-bbd1-7dda75061770 submitted |
|
2018-08-11 03:04:44,515 cromwell-system-akka.dispatchers.backend-dispatcher-93 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(4c8e6262)wf.write_map:NA:1]: `cat /cromwell_root/cloud-cromwell-dev/cromwell_execution/travis/wf/4c8e6262-97b0-44ce-9c03-88729f6d29b8/call-write_map/write_map_6006324d6cd2dfef3e8053eda2187f08.tmp` |
|
2018-08-11 03:04:44,590 cromwell-system-akka.dispatchers.engine-dispatcher-32 ERROR - WorkflowManagerActor Workflow 9f289b57-a9fe-4508-b98d-561979521498 failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out |
|
at java.net.PlainSocketImpl.socketConnect(Native Method) |
|
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350) |
|
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206) |
|
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188) |
|
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392) |
|
at java.net.Socket.connect(Socket.java:589) |
|
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673) |
|
at sun.net.NetworkClient.doConnect(NetworkClient.java:175) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558) |
|
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264) |
|
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291) |
|
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250) |
|
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981) |
|
at com.google.api.client.auth.oauth2.TokenRequest.executeUnparsed(TokenRequest.java:283) |
|
at com.google.api.client.auth.oauth2.TokenRequest.execute(TokenRequest.java:307) |
|
at com.google.api.client.googleapis.auth.oauth2.GoogleCredential.executeRefreshToken(GoogleCredential.java:394) |
|
at com.google.api.client.auth.oauth2.Credential.refreshToken(Credential.java:489) |
|
at com.google.api.client.auth.oauth2.Credential.intercept(Credential.java:217) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:868) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469) |
|
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101) |
|
at scala.Option.map(Option.scala:146) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121) |
|
at scala.util.Success.$anonfun$map$1(Try.scala:251) |
|
at scala.util.Success.map(Try.scala:209) |
|
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288) |
|
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29) |
|
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
|
|
2018-08-11 03:04:44,590 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - WorkflowManagerActor WorkflowActor-9f289b57-a9fe-4508-b98d-561979521498 is in a terminal state: WorkflowFailedState |
|
2018-08-11 03:04:44,598 cromwell-system-akka.dispatchers.backend-dispatcher-82 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(d224abcb)sizeenginefunction.make_a_file:1:1]: `echo "hey look here's a file" > a_file` |
|
2018-08-11 03:04:44,611 ERROR - Test 'successfully run sub_workflow_interactions_scatter' with workflow id '08ce6481-a38f-4406-b3a1-6b44c21695dd' failed on attempt 1 of 3 |
|
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded |
|
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181) |
|
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138) |
|
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304) |
|
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125) |
|
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70) |
|
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43) |
|
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44) |
|
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284) |
|
at scala.concurrent.Promise.complete(Promise.scala:49) |
|
at scala.concurrent.Promise.complete$(Promise.scala:48) |
|
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183) |
|
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
2018-08-11 03:04:44,636 cromwell-system-akka.dispatchers.backend-dispatcher-77 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(970888c3)array_literal_locations.array_literal_locations_ii:0:1]: ` |
|
echo 0 > out` |
|
2018-08-11 03:04:44,640 cromwell-system-akka.dispatchers.api-dispatcher-65 INFO - Unspecified type (Unspecified version) workflow 3113a7e4-2c70-4d7a-91ea-caca846086ed submitted |
|
2018-08-11 03:04:44,666 cromwell-system-akka.dispatchers.backend-dispatcher-37 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(0303e48f)ifs_in_scatters.validate_int:1:1]: `echo $(( 1 % 2 ))` |
|
2018-08-11 03:04:44,726 cromwell-system-akka.dispatchers.backend-dispatcher-88 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(ad0aad1c)subhello.hello:NA:1]: `` |
|
2018-08-11 03:04:44,734 cromwell-system-akka.dispatchers.backend-dispatcher-82 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(0303e48f)ifs_in_scatters.validate_int:4:1]: `echo $(( 4 % 2 ))` |
|
2018-08-11 03:04:44,760 cromwell-system-akka.dispatchers.backend-dispatcher-88 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(4ce7acb7)floating_tags.echoAgain:NA:1]: `echo "Peter Piper picked a peck of pickled peppers"` |
|
2018-08-11 03:04:44,771 cromwell-system-akka.dispatchers.backend-dispatcher-88 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(8d1c0d0f)docker_hash_dockerhub.defaultRegistryHost:NA:1]: `echo "hello"` |
|
2018-08-11 03:04:44,782 cromwell-system-akka.dispatchers.backend-dispatcher-88 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(6508de0e)gpu_on_papi.task_with_tesla_p100:NA:1]: `curl "https://www.googleapis.com/compute/v1/projects/broad-dsde-cromwell-dev/zones/us-central1-c/instances/$(curl -s "http://metadata.google.internal/computeMetadata/v1/instance/name" -H "Metadata-Flavor: Google")?fields=guestAccelerators" -H "Authorization: Bearer $(gcloud auth application-default print-access-token)" -H 'Accept: application/json' --compressed` |
|
2018-08-11 03:04:45,067 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - 2 new workflows fetched |
|
2018-08-11 03:04:45,072 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowManagerActor Starting workflow UUID(b36006b1-dc8c-4a0c-bbd1-7dda75061770) |
|
2018-08-11 03:04:45,072 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowManagerActor Successfully started WorkflowActor-b36006b1-dc8c-4a0c-bbd1-7dda75061770 |
|
2018-08-11 03:04:45,072 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowManagerActor Starting workflow UUID(3113a7e4-2c70-4d7a-91ea-caca846086ed) |
|
2018-08-11 03:04:45,072 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowManagerActor Successfully started WorkflowActor-3113a7e4-2c70-4d7a-91ea-caca846086ed |
|
2018-08-11 03:04:45,072 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - Retrieved 2 workflows from the WorkflowStoreActor |
|
2018-08-11 03:04:45,371 INFO - Pre-Processing /tmp/a98c35e2-4292-488b-9249-87f65394470e.temp.8880008899962316976/three_step.cwl |
|
[32m- should fail during execution bad_docker_name (2 minutes, 15 seconds)[0m |
|
2018-08-11 03:04:45,888 cromwell-system-akka.dispatchers.api-dispatcher-65 INFO - Unspecified type (Unspecified version) workflow 5e79e206-6475-4bd0-b71a-18ec3e90fd72 submitted |
|
[32m- should fail during execution missing_sub_inputs (45 seconds, 150 milliseconds)[0m |
|
2018-08-11 03:04:46,728 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - MaterializeWorkflowDescriptorActor [UUID(a98c35e2)]: Call-to-Backend assignments: ps -> Papi, cgrep -> Papi, wc -> Papi |
|
2018-08-11 03:04:48,209 cromwell-system-akka.dispatchers.api-dispatcher-68 INFO - Unspecified type (Unspecified version) workflow a6912259-ff00-45de-99cb-7406da4163f8 submitted |
|
2018-08-11 03:04:48,559 cromwell-system-akka.dispatchers.api-dispatcher-68 INFO - Unspecified type (Unspecified version) workflow 8ce72840-3dd0-42e4-872d-f42fd86bf88c submitted |
|
[32m- should successfully run biscayne_as_map_et_al (1 minute, 45 seconds)[0m |
|
2018-08-11 03:04:51,235 ERROR - Test 'successfully run cwl_scatter_wf1' with workflow id 'bcf2af35-0d99-4072-ab0c-5f1a64fac90b' failed on attempt 1 of 3 |
|
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded |
|
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181) |
|
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138) |
|
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304) |
|
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125) |
|
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70) |
|
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43) |
|
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44) |
|
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284) |
|
at scala.concurrent.Promise.complete(Promise.scala:49) |
|
at scala.concurrent.Promise.complete$(Promise.scala:48) |
|
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183) |
|
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
2018-08-11 03:04:51,278 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - CWL (v1.0) workflow 0a8e6122-856b-400f-bfc3-efce791876be submitted |
|
2018-08-11 03:04:53,454 ERROR - Test 'successfully run globbingBehavior' with workflow id 'd3fbad9b-3fb1-4f7c-866e-cf2568ef76e5' failed on attempt 1 of 3 |
|
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded |
|
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181) |
|
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138) |
|
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304) |
|
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125) |
|
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70) |
|
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43) |
|
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44) |
|
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284) |
|
at scala.concurrent.Promise.complete(Promise.scala:49) |
|
at scala.concurrent.Promise.complete$(Promise.scala:48) |
|
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183) |
|
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
2018-08-11 03:04:53,475 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - Unspecified type (Unspecified version) workflow 10910c51-059b-4005-8e2a-df517096a8f2 submitted |
|
2018-08-11 03:04:53,794 cromwell-system-akka.dispatchers.backend-dispatcher-73 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(0303e48f)ifs_in_scatters.init:NA:1]: `echo 1` |
|
Metadata mismatch for 9f289b57-a9fe-4508-b98d-561979521498 - retrying |
|
2018-08-11 03:04:55,357 cromwell-system-akka.dispatchers.backend-dispatcher-63 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(0303e48f)ifs_in_scatters.validate_int:3:1]: `echo $(( 3 % 2 ))` |
|
2018-08-11 03:04:55,372 cromwell-system-akka.dispatchers.backend-dispatcher-83 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(970888c3)array_literal_locations.array_literal_locations_ii:1:1]: ` |
|
echo 1 > out` |
|
2018-08-11 03:04:55,373 cromwell-system-akka.dispatchers.engine-dispatcher-32 ERROR - WorkflowManagerActor Workflow 9885fa07-3820-45d9-8d28-a2c9bcd351f6 failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out |
|
at java.net.PlainSocketImpl.socketConnect(Native Method) |
|
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350) |
|
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206) |
|
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188) |
|
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392) |
|
at java.net.Socket.connect(Socket.java:589) |
|
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673) |
|
at sun.net.NetworkClient.doConnect(NetworkClient.java:175) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558) |
|
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264) |
|
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291) |
|
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250) |
|
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981) |
|
at com.google.api.client.auth.oauth2.TokenRequest.executeUnparsed(TokenRequest.java:283) |
|
at com.google.api.client.auth.oauth2.TokenRequest.execute(TokenRequest.java:307) |
|
at com.google.api.client.googleapis.auth.oauth2.GoogleCredential.executeRefreshToken(GoogleCredential.java:394) |
|
at com.google.api.client.auth.oauth2.Credential.refreshToken(Credential.java:489) |
|
at com.google.api.client.auth.oauth2.Credential.intercept(Credential.java:217) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:868) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469) |
|
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101) |
|
at scala.Option.map(Option.scala:146) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121) |
|
at scala.util.Success.$anonfun$map$1(Try.scala:251) |
|
at scala.util.Success.map(Try.scala:209) |
|
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288) |
|
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29) |
|
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
|
|
2018-08-11 03:04:55,374 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - WorkflowManagerActor WorkflowActor-9885fa07-3820-45d9-8d28-a2c9bcd351f6 is in a terminal state: WorkflowFailedState |
|
2018-08-11 03:04:55,485 cromwell-system-akka.dispatchers.engine-dispatcher-30 ERROR - WorkflowManagerActor Workflow 20e4ae72-496d-4b38-be24-845cea7aadad failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out |
|
at java.net.PlainSocketImpl.socketConnect(Native Method) |
|
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350) |
|
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206) |
|
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188) |
|
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392) |
|
at java.net.Socket.connect(Socket.java:589) |
|
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673) |
|
at sun.net.NetworkClient.doConnect(NetworkClient.java:175) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558) |
|
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264) |
|
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291) |
|
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250) |
|
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981) |
|
at com.google.api.client.auth.oauth2.TokenRequest.executeUnparsed(TokenRequest.java:283) |
|
at com.google.api.client.auth.oauth2.TokenRequest.execute(TokenRequest.java:307) |
|
at com.google.api.client.googleapis.auth.oauth2.GoogleCredential.executeRefreshToken(GoogleCredential.java:394) |
|
at com.google.api.client.auth.oauth2.Credential.refreshToken(Credential.java:489) |
|
at com.google.api.client.auth.oauth2.Credential.intercept(Credential.java:217) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:868) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469) |
|
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101) |
|
at scala.Option.map(Option.scala:146) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121) |
|
at scala.util.Success.$anonfun$map$1(Try.scala:251) |
|
at scala.util.Success.map(Try.scala:209) |
|
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288) |
|
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29) |
|
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
|
|
2018-08-11 03:04:55,485 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor WorkflowActor-20e4ae72-496d-4b38-be24-845cea7aadad is in a terminal state: WorkflowFailedState |
|
2018-08-11 03:04:55,505 cromwell-system-akka.dispatchers.backend-dispatcher-72 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(57af2395)cwl-cache-within-workflow.foo:NA:1]: `echo 16.23381791021144` |
|
2018-08-11 03:04:55,515 cromwell-system-akka.dispatchers.engine-dispatcher-33 ERROR - WorkflowManagerActor Workflow 2a33a921-66f8-4534-ab8d-bb9cbc388882 failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out |
|
at java.net.PlainSocketImpl.socketConnect(Native Method) |
|
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350) |
|
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206) |
|
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188) |
|
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392) |
|
at java.net.Socket.connect(Socket.java:589) |
|
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673) |
|
at sun.net.NetworkClient.doConnect(NetworkClient.java:175) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558) |
|
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264) |
|
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291) |
|
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250) |
|
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981) |
|
at com.google.api.client.auth.oauth2.TokenRequest.executeUnparsed(TokenRequest.java:283) |
|
at com.google.api.client.auth.oauth2.TokenRequest.execute(TokenRequest.java:307) |
|
at com.google.api.client.googleapis.auth.oauth2.GoogleCredential.executeRefreshToken(GoogleCredential.java:394) |
|
at com.google.api.client.auth.oauth2.Credential.refreshToken(Credential.java:489) |
|
at com.google.api.client.auth.oauth2.Credential.intercept(Credential.java:217) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:868) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469) |
|
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101) |
|
at scala.Option.map(Option.scala:146) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121) |
|
at scala.util.Success.$anonfun$map$1(Try.scala:251) |
|
at scala.util.Success.map(Try.scala:209) |
|
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288) |
|
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29) |
|
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
|
|
2018-08-11 03:04:55,515 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowManagerActor WorkflowActor-2a33a921-66f8-4534-ab8d-bb9cbc388882 is in a terminal state: WorkflowFailedState |
|
2018-08-11 03:04:55,520 cromwell-system-akka.dispatchers.backend-dispatcher-72 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(6de9f48d)restart_while_failing.B1:NA:1]: `sleep 600 |
|
exit 0` |
|
2018-08-11 03:04:55,527 cromwell-system-akka.dispatchers.backend-dispatcher-72 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(34970377)subhello.hello:NA:1]: `` |
|
2018-08-11 03:04:55,535 cromwell-system-akka.dispatchers.backend-dispatcher-72 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(1e699359)subhello.hello:NA:1]: `` |
|
2018-08-11 03:04:55,549 cromwell-system-akka.dispatchers.engine-dispatcher-31 ERROR - WorkflowManagerActor Workflow c9359ca2-3b35-46c3-9f8d-69f196f8c234 failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out |
|
at java.net.PlainSocketImpl.socketConnect(Native Method) |
|
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350) |
|
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206) |
|
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188) |
|
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392) |
|
at java.net.Socket.connect(Socket.java:589) |
|
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673) |
|
at sun.net.NetworkClient.doConnect(NetworkClient.java:175) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558) |
|
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264) |
|
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291) |
|
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250) |
|
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981) |
|
at com.google.api.client.auth.oauth2.TokenRequest.executeUnparsed(TokenRequest.java:283) |
|
at com.google.api.client.auth.oauth2.TokenRequest.execute(TokenRequest.java:307) |
|
at com.google.api.client.googleapis.auth.oauth2.GoogleCredential.executeRefreshToken(GoogleCredential.java:394) |
|
at com.google.api.client.auth.oauth2.Credential.refreshToken(Credential.java:489) |
|
at com.google.api.client.auth.oauth2.Credential.intercept(Credential.java:217) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:868) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469) |
|
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101) |
|
at scala.Option.map(Option.scala:146) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121) |
|
at scala.util.Success.$anonfun$map$1(Try.scala:251) |
|
at scala.util.Success.map(Try.scala:209) |
|
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288) |
|
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29) |
|
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
|
|
2018-08-11 03:04:55,549 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor WorkflowActor-c9359ca2-3b35-46c3-9f8d-69f196f8c234 is in a terminal state: WorkflowFailedState |
|
2018-08-11 03:04:55,617 cromwell-system-akka.dispatchers.engine-dispatcher-25 ERROR - WorkflowManagerActor Workflow 36f3b181-a6ca-4bba-8122-5921681f9c30 failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out |
|
at java.net.PlainSocketImpl.socketConnect(Native Method) |
|
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350) |
|
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206) |
|
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188) |
|
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392) |
|
at java.net.Socket.connect(Socket.java:589) |
|
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673) |
|
at sun.net.NetworkClient.doConnect(NetworkClient.java:175) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558) |
|
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264) |
|
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291) |
|
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250) |
|
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981) |
|
at com.google.api.client.auth.oauth2.TokenRequest.executeUnparsed(TokenRequest.java:283) |
|
at com.google.api.client.auth.oauth2.TokenRequest.execute(TokenRequest.java:307) |
|
at com.google.api.client.googleapis.auth.oauth2.GoogleCredential.executeRefreshToken(GoogleCredential.java:394) |
|
at com.google.api.client.auth.oauth2.Credential.refreshToken(Credential.java:489) |
|
at com.google.api.client.auth.oauth2.Credential.intercept(Credential.java:217) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:868) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469) |
|
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101) |
|
at scala.Option.map(Option.scala:146) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121) |
|
at scala.util.Success.$anonfun$map$1(Try.scala:251) |
|
at scala.util.Success.map(Try.scala:209) |
|
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288) |
|
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29) |
|
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
|
|
2018-08-11 03:04:55,622 cromwell-system-akka.dispatchers.backend-dispatcher-72 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(7ec6d290)foo_in_a_box.foo:NA:1]: `echo hi` |
|
2018-08-11 03:04:55,622 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - WorkflowManagerActor WorkflowActor-36f3b181-a6ca-4bba-8122-5921681f9c30 is in a terminal state: WorkflowFailedState |
|
2018-08-11 03:04:55,647 cromwell-system-akka.dispatchers.backend-dispatcher-74 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(0303e48f)ifs_in_scatters.validate_int:2:1]: `echo $(( 2 % 2 ))` |
|
2018-08-11 03:04:55,672 cromwell-system-akka.dispatchers.backend-dispatcher-78 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(468f5a17)simple_if.runMeTrue:NA:1]: `echo "done"` |
|
2018-08-11 03:04:55,732 cromwell-system-akka.dispatchers.backend-dispatcher-39 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(0303e48f)ifs_in_scatters.validate_int:0:1]: `echo $(( 0 % 2 ))` |
|
2018-08-11 03:04:55,759 cromwell-system-akka.dispatchers.engine-dispatcher-6 ERROR - WorkflowManagerActor Workflow e156075b-3665-4f74-a3d6-0e5b0a2c7c14 failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out |
|
at java.net.PlainSocketImpl.socketConnect(Native Method) |
|
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350) |
|
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206) |
|
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188) |
|
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392) |
|
at java.net.Socket.connect(Socket.java:589) |
|
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673) |
|
at sun.net.NetworkClient.doConnect(NetworkClient.java:175) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558) |
|
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264) |
|
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291) |
|
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250) |
|
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469) |
|
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101) |
|
at scala.Option.map(Option.scala:146) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121) |
|
at scala.util.Success.$anonfun$map$1(Try.scala:251) |
|
at scala.util.Success.map(Try.scala:209) |
|
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288) |
|
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29) |
|
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
|
|
2018-08-11 03:04:55,759 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor WorkflowActor-e156075b-3665-4f74-a3d6-0e5b0a2c7c14 is in a terminal state: WorkflowFailedState |
|
2018-08-11 03:04:55,759 cromwell-system-akka.dispatchers.engine-dispatcher-6 ERROR - WorkflowManagerActor Workflow 142ef04d-5716-4eee-9c6d-6450d8b1d241 failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out |
|
at java.net.PlainSocketImpl.socketConnect(Native Method) |
|
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350) |
|
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206) |
|
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188) |
|
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392) |
|
at java.net.Socket.connect(Socket.java:589) |
|
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673) |
|
at sun.net.NetworkClient.doConnect(NetworkClient.java:175) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558) |
|
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264) |
|
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291) |
|
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250) |
|
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981) |
|
at com.google.api.client.auth.oauth2.TokenRequest.executeUnparsed(TokenRequest.java:283) |
|
at com.google.api.client.auth.oauth2.TokenRequest.execute(TokenRequest.java:307) |
|
at com.google.api.client.googleapis.auth.oauth2.GoogleCredential.executeRefreshToken(GoogleCredential.java:394) |
|
at com.google.api.client.auth.oauth2.Credential.refreshToken(Credential.java:489) |
|
at com.google.api.client.auth.oauth2.Credential.intercept(Credential.java:217) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:868) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469) |
|
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101) |
|
at scala.Option.map(Option.scala:146) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121) |
|
at scala.util.Success.$anonfun$map$1(Try.scala:251) |
|
at scala.util.Success.map(Try.scala:209) |
|
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288) |
|
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29) |
|
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
|
|
2018-08-11 03:04:55,762 cromwell-system-akka.dispatchers.backend-dispatcher-84 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(8d1c0d0f)docker_hash_dockerhub.dockerWithoutHost:NA:1]: `echo "hello"` |
|
2018-08-11 03:04:55,762 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowManagerActor WorkflowActor-142ef04d-5716-4eee-9c6d-6450d8b1d241 is in a terminal state: WorkflowFailedState |
|
2018-08-11 03:04:55,771 cromwell-system-akka.dispatchers.engine-dispatcher-33 ERROR - WorkflowManagerActor Workflow 2081df5a-e04e-44d1-927d-922925d318c2 failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out |
|
at java.net.PlainSocketImpl.socketConnect(Native Method) |
|
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350) |
|
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206) |
|
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188) |
|
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392) |
|
at java.net.Socket.connect(Socket.java:589) |
|
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673) |
|
at sun.net.NetworkClient.doConnect(NetworkClient.java:175) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558) |
|
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264) |
|
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291) |
|
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250) |
|
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981) |
|
at com.google.api.client.auth.oauth2.TokenRequest.executeUnparsed(TokenRequest.java:283) |
|
at com.google.api.client.auth.oauth2.TokenRequest.execute(TokenRequest.java:307) |
|
at com.google.api.client.googleapis.auth.oauth2.GoogleCredential.executeRefreshToken(GoogleCredential.java:394) |
|
at com.google.api.client.auth.oauth2.Credential.refreshToken(Credential.java:489) |
|
at com.google.api.client.auth.oauth2.Credential.intercept(Credential.java:217) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:868) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469) |
|
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101) |
|
at scala.Option.map(Option.scala:146) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121) |
|
at scala.util.Success.$anonfun$map$1(Try.scala:251) |
|
at scala.util.Success.map(Try.scala:209) |
|
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288) |
|
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29) |
|
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
|
|
2018-08-11 03:04:55,772 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowManagerActor WorkflowActor-2081df5a-e04e-44d1-927d-922925d318c2 is in a terminal state: WorkflowFailedState |
|
2018-08-11 03:04:55,776 cromwell-system-akka.dispatchers.backend-dispatcher-84 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(0ee37b0c)subhello.hello:NA:1]: `` |
|
2018-08-11 03:04:55,953 cromwell-system-akka.dispatchers.engine-dispatcher-25 ERROR - WorkflowManagerActor Workflow 7956ba9d-3aa5-4817-bbbc-87615e22e697 failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out |
|
at java.net.PlainSocketImpl.socketConnect(Native Method) |
|
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350) |
|
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206) |
|
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188) |
|
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392) |
|
at java.net.Socket.connect(Socket.java:589) |
|
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673) |
|
at sun.net.NetworkClient.doConnect(NetworkClient.java:175) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558) |
|
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264) |
|
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291) |
|
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250) |
|
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469) |
|
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101) |
|
at scala.Option.map(Option.scala:146) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121) |
|
at scala.util.Success.$anonfun$map$1(Try.scala:251) |
|
at scala.util.Success.map(Try.scala:209) |
|
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288) |
|
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29) |
|
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
|
|
2018-08-11 03:04:55,955 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor WorkflowActor-7956ba9d-3aa5-4817-bbbc-87615e22e697 is in a terminal state: WorkflowFailedState |
|
2018-08-11 03:04:55,976 cromwell-system-akka.dispatchers.engine-dispatcher-25 ERROR - WorkflowManagerActor Workflow 7a9803d4-b4f5-45f9-aad9-3193335b7129 failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out |
|
at java.net.PlainSocketImpl.socketConnect(Native Method) |
|
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350) |
|
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206) |
|
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188) |
|
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392) |
|
at java.net.Socket.connect(Socket.java:589) |
|
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673) |
|
at sun.net.NetworkClient.doConnect(NetworkClient.java:175) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558) |
|
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264) |
|
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291) |
|
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250) |
|
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981) |
|
at com.google.api.client.auth.oauth2.TokenRequest.executeUnparsed(TokenRequest.java:283) |
|
at com.google.api.client.auth.oauth2.TokenRequest.execute(TokenRequest.java:307) |
|
at com.google.api.client.googleapis.auth.oauth2.GoogleCredential.executeRefreshToken(GoogleCredential.java:394) |
|
at com.google.api.client.auth.oauth2.Credential.refreshToken(Credential.java:489) |
|
at com.google.api.client.auth.oauth2.Credential.intercept(Credential.java:217) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:868) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469) |
|
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101) |
|
at scala.Option.map(Option.scala:146) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121) |
|
at scala.util.Success.$anonfun$map$1(Try.scala:251) |
|
at scala.util.Success.map(Try.scala:209) |
|
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288) |
|
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29) |
|
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
|
|
2018-08-11 03:04:55,986 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor WorkflowActor-7a9803d4-b4f5-45f9-aad9-3193335b7129 is in a terminal state: WorkflowFailedState |
|
2018-08-11 03:04:56,008 cromwell-system-akka.dispatchers.engine-dispatcher-25 ERROR - WorkflowManagerActor Workflow 3d659be9-2e78-400b-82cf-7bc586b2145e failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out |
|
at java.net.PlainSocketImpl.socketConnect(Native Method) |
|
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350) |
|
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206) |
|
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188) |
|
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392) |
|
at java.net.Socket.connect(Socket.java:589) |
|
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673) |
|
at sun.net.NetworkClient.doConnect(NetworkClient.java:175) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558) |
|
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264) |
|
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291) |
|
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250) |
|
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469) |
|
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101) |
|
at scala.Option.map(Option.scala:146) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121) |
|
at scala.util.Success.$anonfun$map$1(Try.scala:251) |
|
at scala.util.Success.map(Try.scala:209) |
|
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288) |
|
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29) |
|
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
|
|
2018-08-11 03:04:56,009 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor WorkflowActor-3d659be9-2e78-400b-82cf-7bc586b2145e is in a terminal state: WorkflowFailedState |
|
2018-08-11 03:04:56,065 cromwell-system-akka.dispatchers.engine-dispatcher-6 ERROR - WorkflowManagerActor Workflow b70ad92d-5860-45a4-a065-4bbf8cc38519 failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out |
|
at java.net.PlainSocketImpl.socketConnect(Native Method) |
|
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350) |
|
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206) |
|
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188) |
|
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392) |
|
at java.net.Socket.connect(Socket.java:589) |
|
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673) |
|
at sun.net.NetworkClient.doConnect(NetworkClient.java:175) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558) |
|
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264) |
|
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291) |
|
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250) |
|
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981) |
|
at com.google.api.client.auth.oauth2.TokenRequest.executeUnparsed(TokenRequest.java:283) |
|
at com.google.api.client.auth.oauth2.TokenRequest.execute(TokenRequest.java:307) |
|
at com.google.api.client.googleapis.auth.oauth2.GoogleCredential.executeRefreshToken(GoogleCredential.java:394) |
|
at com.google.api.client.auth.oauth2.Credential.refreshToken(Credential.java:489) |
|
at com.google.api.client.auth.oauth2.Credential.intercept(Credential.java:217) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:868) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469) |
|
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101) |
|
at scala.Option.map(Option.scala:146) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121) |
|
at scala.util.Success.$anonfun$map$1(Try.scala:251) |
|
at scala.util.Success.map(Try.scala:209) |
|
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288) |
|
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29) |
|
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
|
|
2018-08-11 03:04:56,066 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowManagerActor WorkflowActor-b70ad92d-5860-45a4-a065-4bbf8cc38519 is in a terminal state: WorkflowFailedState |
|
2018-08-11 03:04:56,178 cromwell-system-akka.dispatchers.engine-dispatcher-31 ERROR - WorkflowManagerActor Workflow 349a0c37-10db-40da-9337-b26ba7d3773a failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out |
|
at java.net.PlainSocketImpl.socketConnect(Native Method) |
|
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350) |
|
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206) |
|
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188) |
|
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392) |
|
at java.net.Socket.connect(Socket.java:589) |
|
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673) |
|
at sun.net.NetworkClient.doConnect(NetworkClient.java:175) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558) |
|
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264) |
|
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291) |
|
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250) |
|
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469) |
|
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101) |
|
at scala.Option.map(Option.scala:146) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121) |
|
at scala.util.Success.$anonfun$map$1(Try.scala:251) |
|
at scala.util.Success.map(Try.scala:209) |
|
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288) |
|
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29) |
|
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
|
|
2018-08-11 03:04:56,179 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor WorkflowActor-349a0c37-10db-40da-9337-b26ba7d3773a is in a terminal state: WorkflowFailedState |
|
2018-08-11 03:04:56,255 cromwell-system-akka.dispatchers.engine-dispatcher-6 ERROR - WorkflowManagerActor Workflow 4f46f274-d37a-4080-b792-f7c7d1e4ec38 failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out |
|
at java.net.PlainSocketImpl.socketConnect(Native Method) |
|
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350) |
|
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206) |
|
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188) |
|
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392) |
|
at java.net.Socket.connect(Socket.java:589) |
|
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673) |
|
at sun.net.NetworkClient.doConnect(NetworkClient.java:175) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558) |
|
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264) |
|
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291) |
|
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250) |
|
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469) |
|
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101) |
|
at scala.Option.map(Option.scala:146) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121) |
|
at scala.util.Success.$anonfun$map$1(Try.scala:251) |
|
at scala.util.Success.map(Try.scala:209) |
|
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288) |
|
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29) |
|
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
|
|
2018-08-11 03:04:56,258 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor WorkflowActor-4f46f274-d37a-4080-b792-f7c7d1e4ec38 is in a terminal state: WorkflowFailedState |
|
2018-08-11 03:04:56,305 cromwell-system-akka.dispatchers.engine-dispatcher-30 ERROR - WorkflowManagerActor Workflow ec50b955-8811-4810-ba70-f44000e9704c failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out |
|
at java.net.PlainSocketImpl.socketConnect(Native Method) |
|
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350) |
|
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206) |
|
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188) |
|
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392) |
|
at java.net.Socket.connect(Socket.java:589) |
|
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673) |
|
at sun.net.NetworkClient.doConnect(NetworkClient.java:175) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558) |
|
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264) |
|
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291) |
|
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250) |
|
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981) |
|
at com.google.api.client.auth.oauth2.TokenRequest.executeUnparsed(TokenRequest.java:283) |
|
at com.google.api.client.auth.oauth2.TokenRequest.execute(TokenRequest.java:307) |
|
at com.google.api.client.googleapis.auth.oauth2.GoogleCredential.executeRefreshToken(GoogleCredential.java:394) |
|
at com.google.api.client.auth.oauth2.Credential.refreshToken(Credential.java:489) |
|
at com.google.api.client.auth.oauth2.Credential.intercept(Credential.java:217) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:868) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469) |
|
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101) |
|
at scala.Option.map(Option.scala:146) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121) |
|
at scala.util.Success.$anonfun$map$1(Try.scala:251) |
|
at scala.util.Success.map(Try.scala:209) |
|
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288) |
|
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29) |
|
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
|
|
2018-08-11 03:04:56,306 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor WorkflowActor-ec50b955-8811-4810-ba70-f44000e9704c is in a terminal state: WorkflowFailedState |
|
2018-08-11 03:04:56,313 cromwell-system-akka.dispatchers.engine-dispatcher-34 ERROR - WorkflowManagerActor Workflow 5aee7025-daea-49ef-97fc-8355f508563d failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out |
|
at java.net.PlainSocketImpl.socketConnect(Native Method) |
|
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350) |
|
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206) |
|
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188) |
|
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392) |
|
at java.net.Socket.connect(Socket.java:589) |
|
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673) |
|
at sun.net.NetworkClient.doConnect(NetworkClient.java:175) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558) |
|
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264) |
|
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291) |
|
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250) |
|
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469) |
|
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101) |
|
at scala.Option.map(Option.scala:146) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121) |
|
at scala.util.Success.$anonfun$map$1(Try.scala:251) |
|
at scala.util.Success.map(Try.scala:209) |
|
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288) |
|
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29) |
|
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
|
|
2018-08-11 03:04:56,313 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor WorkflowActor-5aee7025-daea-49ef-97fc-8355f508563d is in a terminal state: WorkflowFailedState |
|
2018-08-11 03:04:56,551 cromwell-system-akka.dispatchers.engine-dispatcher-33 ERROR - WorkflowManagerActor Workflow 01b6dcd8-938f-4c09-b89c-46c044a5a885 failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out |
|
at java.net.PlainSocketImpl.socketConnect(Native Method) |
|
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350) |
|
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206) |
|
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188) |
|
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392) |
|
at java.net.Socket.connect(Socket.java:589) |
|
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673) |
|
at sun.net.NetworkClient.doConnect(NetworkClient.java:175) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558) |
|
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264) |
|
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291) |
|
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250) |
|
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981) |
|
at com.google.api.client.auth.oauth2.TokenRequest.executeUnparsed(TokenRequest.java:283) |
|
at com.google.api.client.auth.oauth2.TokenRequest.execute(TokenRequest.java:307) |
|
at com.google.api.client.googleapis.auth.oauth2.GoogleCredential.executeRefreshToken(GoogleCredential.java:394) |
|
at com.google.api.client.auth.oauth2.Credential.refreshToken(Credential.java:489) |
|
at com.google.api.client.auth.oauth2.Credential.intercept(Credential.java:217) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:868) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469) |
|
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101) |
|
at scala.Option.map(Option.scala:146) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121) |
|
at scala.util.Success.$anonfun$map$1(Try.scala:251) |
|
at scala.util.Success.map(Try.scala:209) |
|
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288) |
|
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29) |
|
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
|
|
2018-08-11 03:04:56,551 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowManagerActor WorkflowActor-01b6dcd8-938f-4c09-b89c-46c044a5a885 is in a terminal state: WorkflowFailedState |
|
Metadata mismatch for 9f289b57-a9fe-4508-b98d-561979521498 - retrying |
|
[32m- should successfully run input_expressions (1 minute, 55 seconds)[0m |
|
2018-08-11 03:04:56,557 cromwell-system-akka.dispatchers.engine-dispatcher-31 ERROR - WorkflowManagerActor Workflow 3be432f1-c4f3-4e1e-ad60-dbf04d97e1bf failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out |
|
at java.net.PlainSocketImpl.socketConnect(Native Method) |
|
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350) |
|
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206) |
|
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188) |
|
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392) |
|
at java.net.Socket.connect(Socket.java:589) |
|
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673) |
|
at sun.net.NetworkClient.doConnect(NetworkClient.java:175) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558) |
|
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264) |
|
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291) |
|
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250) |
|
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981) |
|
at com.google.api.client.auth.oauth2.TokenRequest.executeUnparsed(TokenRequest.java:283) |
|
at com.google.api.client.auth.oauth2.TokenRequest.execute(TokenRequest.java:307) |
|
at com.google.api.client.googleapis.auth.oauth2.GoogleCredential.executeRefreshToken(GoogleCredential.java:394) |
|
at com.google.api.client.auth.oauth2.Credential.refreshToken(Credential.java:489) |
|
at com.google.api.client.auth.oauth2.Credential.intercept(Credential.java:217) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:868) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469) |
|
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101) |
|
at scala.Option.map(Option.scala:146) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121) |
|
at scala.util.Success.$anonfun$map$1(Try.scala:251) |
|
at scala.util.Success.map(Try.scala:209) |
|
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288) |
|
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29) |
|
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
|
|
2018-08-11 03:04:56,557 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor WorkflowActor-3be432f1-c4f3-4e1e-ad60-dbf04d97e1bf is in a terminal state: WorkflowFailedState |
|
2018-08-11 03:04:56,583 cromwell-system-akka.dispatchers.engine-dispatcher-32 ERROR - WorkflowManagerActor Workflow b89dd9bd-74c6-4f6e-8487-844be5fb23d9 failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out |
|
at java.net.PlainSocketImpl.socketConnect(Native Method) |
|
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350) |
|
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206) |
|
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188) |
|
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392) |
|
at java.net.Socket.connect(Socket.java:589) |
|
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673) |
|
at sun.net.NetworkClient.doConnect(NetworkClient.java:175) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558) |
|
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264) |
|
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291) |
|
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250) |
|
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981) |
|
at com.google.api.client.auth.oauth2.TokenRequest.executeUnparsed(TokenRequest.java:283) |
|
at com.google.api.client.auth.oauth2.TokenRequest.execute(TokenRequest.java:307) |
|
at com.google.api.client.googleapis.auth.oauth2.GoogleCredential.executeRefreshToken(GoogleCredential.java:394) |
|
at com.google.api.client.auth.oauth2.Credential.refreshToken(Credential.java:489) |
|
at com.google.api.client.auth.oauth2.Credential.intercept(Credential.java:217) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:868) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469) |
|
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101) |
|
at scala.Option.map(Option.scala:146) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121) |
|
at scala.util.Success.$anonfun$map$1(Try.scala:251) |
|
at scala.util.Success.map(Try.scala:209) |
|
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288) |
|
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29) |
|
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
|
|
2018-08-11 03:04:56,589 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - WorkflowManagerActor WorkflowActor-b89dd9bd-74c6-4f6e-8487-844be5fb23d9 is in a terminal state: WorkflowFailedState |
|
2018-08-11 03:04:56,713 cromwell-system-akka.dispatchers.backend-dispatcher-90 WARN - 1 failures (from 4 requests) fetching JES statuses: connect timed out |
|
2018-08-11 03:04:56,742 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowExecutionActor-179eedca-a4f0-4362-8f01-937e31577ffd [UUID(179eedca)]: Starting wf.blah |
|
2018-08-11 03:04:57,109 cromwell-system-akka.dispatchers.engine-dispatcher-31 ERROR - WorkflowManagerActor Workflow 0e656752-aaad-4e45-9121-5b4c13ad7568 failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out |
|
at java.net.PlainSocketImpl.socketConnect(Native Method) |
|
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350) |
|
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206) |
|
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188) |
|
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392) |
|
at java.net.Socket.connect(Socket.java:589) |
|
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673) |
|
at sun.net.NetworkClient.doConnect(NetworkClient.java:175) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558) |
|
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264) |
|
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291) |
|
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250) |
|
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469) |
|
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101) |
|
at scala.Option.map(Option.scala:146) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121) |
|
at scala.util.Success.$anonfun$map$1(Try.scala:251) |
|
at scala.util.Success.map(Try.scala:209) |
|
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288) |
|
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29) |
|
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
|
|
2018-08-11 03:04:57,110 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor WorkflowActor-0e656752-aaad-4e45-9121-5b4c13ad7568 is in a terminal state: WorkflowFailedState |
|
2018-08-11 03:04:57,201 ERROR - Test 'successfully run draft3_custom_mount_point' with workflow id '20e4ae72-496d-4b38-be24-845cea7aadad' failed on attempt 1 of 3 |
|
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded |
|
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181) |
|
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138) |
|
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304) |
|
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125) |
|
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70) |
|
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43) |
|
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44) |
|
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284) |
|
at scala.concurrent.Promise.complete(Promise.scala:49) |
|
at scala.concurrent.Promise.complete$(Promise.scala:48) |
|
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183) |
|
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
2018-08-11 03:04:57,231 cromwell-system-akka.dispatchers.api-dispatcher-64 INFO - Unspecified type (Unspecified version) workflow cb1e96d3-dec2-464d-bb08-8a8dd384e63b submitted |
|
2018-08-11 03:04:58,395 ERROR - Test 'successfully run continue_on_return_code' with workflow id 'b89dd9bd-74c6-4f6e-8487-844be5fb23d9' failed on attempt 1 of 3 |
|
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded |
|
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181) |
|
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138) |
|
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304) |
|
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125) |
|
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70) |
|
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43) |
|
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44) |
|
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284) |
|
at scala.concurrent.Promise.complete(Promise.scala:49) |
|
at scala.concurrent.Promise.complete$(Promise.scala:48) |
|
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183) |
|
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
2018-08-11 03:04:58,418 cromwell-system-akka.dispatchers.api-dispatcher-68 INFO - Unspecified type (Unspecified version) workflow b308af86-310a-40b9-b3b6-16f78d40daf5 submitted |
|
2018-08-11 03:04:58,565 ERROR - Test 'successfully run read_write_json' with workflow id '36f3b181-a6ca-4bba-8122-5921681f9c30' failed on attempt 2 of 3 |
|
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded |
|
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181) |
|
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138) |
|
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304) |
|
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125) |
|
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70) |
|
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43) |
|
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44) |
|
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284) |
|
at scala.concurrent.Promise.complete(Promise.scala:49) |
|
at scala.concurrent.Promise.complete$(Promise.scala:48) |
|
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183) |
|
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
2018-08-11 03:04:58,586 cromwell-system-akka.dispatchers.api-dispatcher-67 INFO - Unspecified type (Unspecified version) workflow 8d81cea7-e7ab-4323-a430-5b63f88ec250 submitted |
|
Metadata mismatch for 9f289b57-a9fe-4508-b98d-561979521498 - retrying |
|
2018-08-11 03:04:59,632 cromwell-system-akka.dispatchers.engine-dispatcher-34 ERROR - WorkflowManagerActor Workflow 4045c6cf-7886-4c5b-b4ee-de418b52c5e0 failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out |
|
at java.net.PlainSocketImpl.socketConnect(Native Method) |
|
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350) |
|
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206) |
|
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188) |
|
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392) |
|
at java.net.Socket.connect(Socket.java:589) |
|
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673) |
|
at sun.net.NetworkClient.doConnect(NetworkClient.java:175) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558) |
|
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264) |
|
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291) |
|
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250) |
|
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469) |
|
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101) |
|
at scala.Option.map(Option.scala:146) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121) |
|
at scala.util.Success.$anonfun$map$1(Try.scala:251) |
|
at scala.util.Success.map(Try.scala:209) |
|
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288) |
|
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29) |
|
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
|
|
2018-08-11 03:04:59,632 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowManagerActor WorkflowActor-4045c6cf-7886-4c5b-b4ee-de418b52c5e0 is in a terminal state: WorkflowFailedState |
|
2018-08-11 03:04:59,754 cromwell-system-akka.dispatchers.backend-dispatcher-90 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(e7ee3d80)invalidate_bad_caches.make_file:NA:1]: job id: projects/broad-dsde-cromwell-dev/operations/14897655148719503925 |
|
Metadata mismatch for 9f289b57-a9fe-4508-b98d-561979521498 - retrying |
|
2018-08-11 03:05:00,977 cromwell-system-akka.dispatchers.engine-dispatcher-34 ERROR - WorkflowManagerActor Workflow e237159a-ed02-4493-9dc3-d6dad533a21c failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out |
|
at java.net.PlainSocketImpl.socketConnect(Native Method) |
|
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350) |
|
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206) |
|
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188) |
|
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392) |
|
at java.net.Socket.connect(Socket.java:589) |
|
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673) |
|
at sun.net.NetworkClient.doConnect(NetworkClient.java:175) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558) |
|
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264) |
|
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291) |
|
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250) |
|
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469) |
|
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101) |
|
at scala.Option.map(Option.scala:146) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121) |
|
at scala.util.Success.$anonfun$map$1(Try.scala:251) |
|
at scala.util.Success.map(Try.scala:209) |
|
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288) |
|
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29) |
|
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
|
|
2018-08-11 03:05:00,978 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowManagerActor WorkflowActor-e237159a-ed02-4493-9dc3-d6dad533a21c is in a terminal state: WorkflowFailedState |
|
2018-08-11 03:05:01,033 ERROR - Test 'successfully run monitoring_log' with workflow id '9885fa07-3820-45d9-8d28-a2c9bcd351f6' failed on attempt 1 of 3 |
|
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded |
|
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181) |
|
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138) |
|
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304) |
|
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125) |
|
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70) |
|
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43) |
|
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44) |
|
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284) |
|
at scala.concurrent.Promise.complete(Promise.scala:49) |
|
at scala.concurrent.Promise.complete$(Promise.scala:48) |
|
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183) |
|
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
2018-08-11 03:05:01,034 cromwell-system-akka.dispatchers.engine-dispatcher-25 ERROR - WorkflowManagerActor Workflow eb2bbf62-e6c4-4864-a109-55b70b728ff0 failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out |
|
at java.net.PlainSocketImpl.socketConnect(Native Method) |
|
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350) |
|
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206) |
|
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188) |
|
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392) |
|
at java.net.Socket.connect(Socket.java:589) |
|
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673) |
|
at sun.net.NetworkClient.doConnect(NetworkClient.java:175) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558) |
|
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264) |
|
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291) |
|
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250) |
|
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469) |
|
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101) |
|
at scala.Option.map(Option.scala:146) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121) |
|
at scala.util.Success.$anonfun$map$1(Try.scala:251) |
|
at scala.util.Success.map(Try.scala:209) |
|
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288) |
|
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29) |
|
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
|
|
2018-08-11 03:05:01,035 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor WorkflowActor-eb2bbf62-e6c4-4864-a109-55b70b728ff0 is in a terminal state: WorkflowFailedState |
|
2018-08-11 03:05:01,078 cromwell-system-akka.dispatchers.api-dispatcher-61 INFO - Unspecified type (Unspecified version) workflow ac058ce0-c67f-4652-9530-b7647780146d submitted |
|
2018-08-11 03:05:01,327 ERROR - Test 'successfully run declarations' with workflow id '4f46f274-d37a-4080-b792-f7c7d1e4ec38' failed on attempt 2 of 3 |
|
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded |
|
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181) |
|
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138) |
|
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304) |
|
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125) |
|
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70) |
|
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43) |
|
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44) |
|
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284) |
|
at scala.concurrent.Promise.complete(Promise.scala:49) |
|
at scala.concurrent.Promise.complete$(Promise.scala:48) |
|
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183) |
|
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
2018-08-11 03:05:01,369 cromwell-system-akka.dispatchers.api-dispatcher-61 INFO - Unspecified type (Unspecified version) workflow f9be5e27-22a0-43a3-89b2-61c0fe27cb02 submitted |
|
2018-08-11 03:05:01,445 ERROR - Test 'successfully run hello_cwl' with workflow id '4045c6cf-7886-4c5b-b4ee-de418b52c5e0' failed on attempt 2 of 3 |
|
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded |
|
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181) |
|
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138) |
|
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304) |
|
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125) |
|
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70) |
|
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43) |
|
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44) |
|
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284) |
|
at scala.concurrent.Promise.complete(Promise.scala:49) |
|
at scala.concurrent.Promise.complete$(Promise.scala:48) |
|
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183) |
|
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
2018-08-11 03:05:01,488 cromwell-system-akka.dispatchers.engine-dispatcher-30 ERROR - WorkflowManagerActor Workflow 2d13b86b-b39f-4bd1-bbbc-861fe998bf3b failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out |
|
at java.net.PlainSocketImpl.socketConnect(Native Method) |
|
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350) |
|
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206) |
|
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188) |
|
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392) |
|
at java.net.Socket.connect(Socket.java:589) |
|
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673) |
|
at sun.net.NetworkClient.doConnect(NetworkClient.java:175) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558) |
|
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264) |
|
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316) |
|
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291) |
|
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250) |
|
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981) |
|
at com.google.api.client.auth.oauth2.TokenRequest.executeUnparsed(TokenRequest.java:283) |
|
at com.google.api.client.auth.oauth2.TokenRequest.execute(TokenRequest.java:307) |
|
at com.google.api.client.googleapis.auth.oauth2.GoogleCredential.executeRefreshToken(GoogleCredential.java:394) |
|
at com.google.api.client.auth.oauth2.Credential.refreshToken(Credential.java:489) |
|
at com.google.api.client.auth.oauth2.Credential.intercept(Credential.java:217) |
|
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:868) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352) |
|
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469) |
|
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101) |
|
at scala.Option.map(Option.scala:146) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98) |
|
at scala.Option.flatMap(Option.scala:171) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65) |
|
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121) |
|
at scala.util.Success.$anonfun$map$1(Try.scala:251) |
|
at scala.util.Success.map(Try.scala:209) |
|
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288) |
|
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29) |
|
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
|
|
2018-08-11 03:05:01,489 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor WorkflowActor-2d13b86b-b39f-4bd1-bbbc-861fe998bf3b is in a terminal state: WorkflowFailedState |
|
2018-08-11 03:05:01,510 cromwell-system-akka.dispatchers.api-dispatcher-61 INFO - CWL (v1.0) workflow ff49e311-498b-48f0-958a-ee4d4a1c58ce submitted |
|
2018-08-11 03:05:02,498 ERROR - Test 'successfully run wdl_function_locations' with workflow id 'c9359ca2-3b35-46c3-9f8d-69f196f8c234' failed on attempt 2 of 3 |
|
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded |
|
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181) |
|
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138) |
|
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304) |
|
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125) |
|
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70) |
|
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43) |
|
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44) |
|
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284) |
|
at scala.concurrent.Promise.complete(Promise.scala:49) |
|
at scala.concurrent.Promise.complete$(Promise.scala:48) |
|
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183) |
|
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
2018-08-11 03:05:02,521 cromwell-system-akka.dispatchers.api-dispatcher-64 INFO - Unspecified type (Unspecified version) workflow 75347614-6bcf-484c-96bd-f68f4d579ac4 submitted |
|
[32m- should successfully run draft3_taskless_engine_functions (1 minute, 35 seconds)[0m |
|
Metadata mismatch for 9f289b57-a9fe-4508-b98d-561979521498 - retrying |
|
2018-08-11 03:05:03,111 ERROR - Test 'successfully run dontglobinputs' with workflow id '5aee7025-daea-49ef-97fc-8355f508563d' failed on attempt 1 of 3 |
|
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded |
|
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181) |
|
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138) |
|
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304) |
|
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125) |
|
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70) |
|
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43) |
|
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44) |
|
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284) |
|
at scala.concurrent.Promise.complete(Promise.scala:49) |
|
at scala.concurrent.Promise.complete$(Promise.scala:48) |
|
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183) |
|
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
2018-08-11 03:05:03,143 cromwell-system-akka.dispatchers.api-dispatcher-64 INFO - Unspecified type (Unspecified version) workflow 8aed7387-8dcb-45a3-9634-3704415925e1 submitted |
|
2018-08-11 03:05:04,212 ERROR - Test 'successfully run requester_pays_engine_functions' with workflow id '2081df5a-e04e-44d1-927d-922925d318c2' failed on attempt 1 of 3 |
|
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded |
|
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181) |
|
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138) |
|
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304) |
|
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125) |
|
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70) |
|
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43) |
|
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44) |
|
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284) |
|
at scala.concurrent.Promise.complete(Promise.scala:49) |
|
at scala.concurrent.Promise.complete$(Promise.scala:48) |
|
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183) |
|
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
2018-08-11 03:05:04,256 cromwell-system-akka.dispatchers.api-dispatcher-61 INFO - WDL (1.0) workflow 0d8d3933-0db2-40a6-ba3f-b625511969a8 submitted |
|
2018-08-11 03:05:04,437 ERROR - Test 'successfully run select_functions' with workflow id '2a33a921-66f8-4534-ab8d-bb9cbc388882' failed on attempt 2 of 3 |
|
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded |
|
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181) |
|
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138) |
|
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304) |
|
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125) |
|
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70) |
|
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43) |
|
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44) |
|
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284) |
|
at scala.concurrent.Promise.complete(Promise.scala:49) |
|
at scala.concurrent.Promise.complete$(Promise.scala:48) |
|
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183) |
|
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
2018-08-11 03:05:04,458 cromwell-system-akka.dispatchers.api-dispatcher-64 INFO - Unspecified type (Unspecified version) workflow bdcbabaa-bf2c-4daf-a886-69004f8aa99e submitted |
|
[32m- should fail during execution valid_labels (1 minute, 5 seconds)[0m |
|
Metadata mismatch for 9f289b57-a9fe-4508-b98d-561979521498 - retrying |
|
2018-08-11 03:05:05,003 ERROR - Test 'successfully run expression_lib_cwl' with workflow id '7956ba9d-3aa5-4817-bbbc-87615e22e697' failed on attempt 2 of 3 |
|
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded |
|
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181) |
|
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138) |
|
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304) |
|
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125) |
|
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70) |
|
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43) |
|
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44) |
|
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284) |
|
at scala.concurrent.Promise.complete(Promise.scala:49) |
|
at scala.concurrent.Promise.complete$(Promise.scala:48) |
|
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183) |
|
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
2018-08-11 03:05:05,038 cromwell-system-akka.dispatchers.api-dispatcher-64 INFO - CWL (v1.0) workflow 22408e97-19b5-429d-bd4d-dc10cc86a34c submitted |
|
2018-08-11 03:05:05,137 ERROR - Test 'successfully run non_root_default_user' with workflow id '0e656752-aaad-4e45-9121-5b4c13ad7568' failed on attempt 2 of 3 |
|
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded |
|
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181) |
|
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138) |
|
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304) |
|
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125) |
|
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70) |
|
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43) |
|
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44) |
|
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284) |
|
at scala.concurrent.Promise.complete(Promise.scala:49) |
|
at scala.concurrent.Promise.complete$(Promise.scala:48) |
|
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183) |
|
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
2018-08-11 03:05:05,185 cromwell-system-akka.dispatchers.api-dispatcher-64 INFO - Unspecified type (Unspecified version) workflow def15f7e-b065-4444-be5f-c7170e966b22 submitted |
|
2018-08-11 03:05:05,273 ERROR - Test 'successfully run complex_types_files' with workflow id '142ef04d-5716-4eee-9c6d-6450d8b1d241' failed on attempt 1 of 3 |
|
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded |
|
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181) |
|
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138) |
|
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304) |
|
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125) |
|
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70) |
|
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43) |
|
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44) |
|
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284) |
|
at scala.concurrent.Promise.complete(Promise.scala:49) |
|
at scala.concurrent.Promise.complete$(Promise.scala:48) |
|
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183) |
|
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
2018-08-11 03:05:05,329 cromwell-system-akka.dispatchers.api-dispatcher-64 INFO - Unspecified type (Unspecified version) workflow 5548765e-baf9-43a4-b9fa-d25138d9e09e submitted |
|
2018-08-11 03:05:05,607 WARN - Initiated a temporary lockdown because of exception: Too many requests to Sentry: https://docs.sentry.io/learn/quotas/ |
|
2018-08-11 03:05:05,608 ERROR - Test 'successfully run draft3_optional_input_from_scatter' with workflow id 'b70ad92d-5860-45a4-a065-4bbf8cc38519' failed on attempt 1 of 3 |
|
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded |
|
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181) |
|
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138) |
|
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304) |
|
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125) |
|
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70) |
|
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43) |
|
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44) |
|
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284) |
|
at scala.concurrent.Promise.complete(Promise.scala:49) |
|
at scala.concurrent.Promise.complete$(Promise.scala:48) |
|
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183) |
|
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
2018-08-11 03:05:05,641 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - WDL (1.0) workflow ceaa7b7f-ec98-4811-b4d6-ceb869464874 submitted |
|
2018-08-11 03:05:05,974 WARN - Graceful shutdown took too much time, forcing the shutdown. |
|
2018-08-11 03:05:05,975 WARN - 0 tasks failed to execute before shutdown. |
|
2018-08-11 03:05:05,976 ERROR - Test 'successfully run input_mirror' with workflow id 'ec50b955-8811-4810-ba70-f44000e9704c' failed on attempt 2 of 3 |
|
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded |
|
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181) |
|
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138) |
|
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304) |
|
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125) |
|
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70) |
|
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43) |
|
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44) |
|
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284) |
|
at scala.concurrent.Promise.complete(Promise.scala:49) |
|
at scala.concurrent.Promise.complete$(Promise.scala:48) |
|
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183) |
|
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
2018-08-11 03:05:06,008 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - Unspecified type (Unspecified version) workflow b06b19be-ef5e-4f29-a338-9b7299086fe5 submitted |
|
2018-08-11 03:05:06,071 WARN - Initiated a temporary lockdown because of exception: {"error":"No JSON data was found"} |
|
2018-08-11 03:05:06,071 ERROR - An exception occurred while sending the event to Sentry. |
|
io.sentry.connection.ConnectionException: {"error":"No JSON data was found"} |
|
at io.sentry.connection.HttpConnection.doSend(HttpConnection.java:216) |
|
at io.sentry.connection.AbstractConnection.send(AbstractConnection.java:76) |
|
at io.sentry.connection.AsyncConnection$EventSubmitter.run(AsyncConnection.java:185) |
|
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) |
|
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) |
|
at java.lang.Thread.run(Thread.java:748) |
|
Caused by: java.net.SocketTimeoutException: connect timed out |
|
at java.net.PlainSocketImpl.socketConnect(Native Method) |
|
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350) |
|
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206) |
|
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188) |
|
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392) |
|
at java.net.Socket.connect(Socket.java:589) |
|
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673) |
|
at sun.net.NetworkClient.doConnect(NetworkClient.java:175) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558) |
|
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264) |
|
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177) |
|
at sun.net.www.protocol.https.HttpsURLConnectionImpl.connect(HttpsURLConnectionImpl.java:153) |
|
at io.sentry.connection.HttpConnection.doSend(HttpConnection.java:168) |
|
... 5 common frames omitted |
|
2018-08-11 03:05:06,234 WARN - Initiated a temporary lockdown because of exception: Too many requests to Sentry: https://docs.sentry.io/learn/quotas/ |
|
2018-08-11 03:05:06,235 ERROR - Test 'successfully run space' with workflow id '3d659be9-2e78-400b-82cf-7bc586b2145e' failed on attempt 2 of 3 |
|
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded |
|
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181) |
|
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138) |
|
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304) |
|
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125) |
|
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70) |
|
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43) |
|
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44) |
|
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284) |
|
at scala.concurrent.Promise.complete(Promise.scala:49) |
|
at scala.concurrent.Promise.complete$(Promise.scala:48) |
|
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183) |
|
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
2018-08-11 03:05:06,252 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - Unspecified type (Unspecified version) workflow 83833cfd-d2cf-49b1-91e2-f481e832b5d7 submitted |
|
[32m- should successfully run draft3_declaration_chain (1 minute, 5 seconds)[0m |
|
Metadata mismatch for 9f289b57-a9fe-4508-b98d-561979521498 - retrying |
|
2018-08-11 03:05:07,136 WARN - Graceful shutdown took too much time, forcing the shutdown. |
|
2018-08-11 03:05:07,136 WARN - 0 tasks failed to execute before shutdown. |
|
2018-08-11 03:05:07,136 ERROR - Test 'successfully run dot_dir_stuck_running' with workflow id '01b6dcd8-938f-4c09-b89c-46c044a5a885' failed on attempt 1 of 3 |
|
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded |
|
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183) |
|
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181) |
|
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138) |
|
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356) |
|
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304) |
|
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125) |
|
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70) |
|
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93) |
|
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43) |
|
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44) |
|
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284) |
|
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284) |
|
at scala.concurrent.Promise.complete(Promise.scala:49) |
|
at scala.concurrent.Promise.complete$(Promise.scala:48) |
|
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183) |
|
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38) |
|
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60) |
|
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91) |
|
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12) |
|
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81) |
|
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91) |
|
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) |
|
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44) |
|
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) |
|
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) |
|
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) |
|
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
|
2018-08-11 03:05:07,182 cromwell-system-akka.dispatchers.api-dispatcher-68 INFO - Unspecified type (Unspecified version) workflow 163fa5b0-ed5d-49ad-9a8f-1c536d2a2d66 submitted |
|
2018-08-11 03:05:07,270 WARN - Initiated a temporary lockdown because of exception: {"error":"No JSON data was found"} |
|
2018-08-11 03:05:07,271 ERROR - An exception occurred while sending the event to Sentry. |
|
io.sentry.connection.ConnectionException: {"error":"No JSON data was found"} |
|
at io.sentry.connection.HttpConnection.doSend(HttpConnection.java:216) |
|
at io.sentry.connection.AbstractConnection.send(AbstractConnection.java:76) |
|
at io.sentry.connection.AsyncConnection$EventSubmitter.run(AsyncConnection.java:185) |
|
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) |
|
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) |
|
at java.lang.Thread.run(Thread.java:748) |
|
Caused by: java.net.SocketTimeoutException: connect timed out |
|
at java.net.PlainSocketImpl.socketConnect(Native Method) |
|
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350) |
|
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206) |
|
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188) |
|
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392) |
|
at java.net.Socket.connect(Socket.java:589) |
|
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673) |
|
at sun.net.NetworkClient.doConnect(NetworkClient.java:175) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463) |
|
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558) |
|
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264) |
|
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138) |
|
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032) |
|
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177) |
|
at sun.net.www.protocol.https.HttpsURLConnectionImpl.connect(HttpsURLConnectionImpl.java:153) |
|
at io.sentry.connection.HttpConnection.doSend(HttpConnection.java:168) |
|
... 5 common frames omitted |
|
2018-08-11 03:05:07,614 ERROR - Test 'successfu |