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A_list_of_ravis_errors_not_addressed_in_PR4000

Description

Cromwell PR #4000 attempts to log and retry a number of issues.

Even as the PR patches other issues, the following have repeatedly popped up in Travis the second week of August 2018.

Attached Test Logs

unknown_status_HealthMonitorServiceActorSpec.txt

The code passed to eventually never returned normally. Attempted 30 times over 20.044225425 seconds. Last failure message: isEmpty was false, and Some(false) did not contain true Instead, a.status.messages = List(Unknown status) and e.status.messages = List(womp womp). (HealthMonitorServiceActorSpec.scala:32)

Transient unit test failure. PR #4000 only currently reports-and-retries centaur tests, not unit tests. This is something that might actually be fixed with a report-and-retry.

sbt_triple_download_attempt_with_not_found.txt

Download failed. Obtain the jar manually and place it at /home/travis/.sbt/launchers/1.1.5/sbt-launch.jar

After seeing multiple builds fail to download sbt-launch.jar, this was an attempt to retry the downloads as a workaround. Even after three attempted downloads via sbt update the travis build still failed to download the jar.

Two suggestions mentioned:

  1. Maybe back-off and hope network heals
  2. Could have sbt launcher in a backup location.

See possibly related issue in stuck_retrying_maven.txt.

stuck_retrying_maven.txt

https://jcenter.bintray.com/org/broadinstitute/dsde/workbench/workbench-model…

Related to the triple download attempt, in this case sbt did download. However then this test still got stuck with repeated messages regarding accessing the same URL. This may indicate that even if sbt-launch.jar is downloaded after a back-off-and-retry that there may be other network errors.

timed_out_centaur_starting_cromwell.txt

Stopping Cromwell... (Timed out waiting for server)

Some sort of timeout while cromwell is restarting. If this isn't an internal network issue it may be worked around with a longer timeout before aborting the centaur suite.

wrong_cache_hit_metadata.txt

-Metadata mismatch for calls.cwl-cache-between-workflows.step-product.callCaching.result - expected: "Cache Hit: 0a1caab8-07ed-454f-9780-a0037f22fe8b:cwl-cache-between-workflows.step-product:-1" but got: "Cache Hit: 0553740f-a7b9-484b-8455-69fb2328cafd:cwl-cache-between-workflows.step-product:-1"

PR #4000 reports-and-retries centaur test failures. But in this case an unexpected original cache hit is reported. There may be other issues to look into here, for example determining why there exists more than one original cache hit.

many_multiple_network_errors.txt

Failed to resolve 'https://raw.githubusercontent.com/broadinstitute/cromwell/develop/centaur/src/main/resources/standardTestCases/wdl_biscayne/biscayne_http_relative_imports/biscayne_http_relative_imports.wdl' using resolver: 'relative to directory / (without escaping None)' (reason 1 of 1): Import file not found: https://raw.githubusercontent.com/broadinstitute/cromwell/develop/centaur/src/main/resources/standardTestCases/wdl_biscayne/biscayne_http_relative_imports/biscayne_http_relative_imports.wdl

During this centaur run there were many different types of network errors to different hosts. The above is just one example where suddenly GitHub was inaccesible.

This file has been truncated, but you can view the full file.
travis_fold:start:step_start_instance
Starting instance
✓ selected image "travis-ci-garnet-trusty-1503972833"
✓ rendered startup script
✓ inserted instance
• sleeping 5s before checking instance insert
• polling for instance insert completion...
✓ instance is ready (6.53s)
travis_fold:end:step_start_instance
travis_fold:start:step_upload_script
Uploading script
• waiting for ssh connectivity..............
✓ ssh connectivity established (31.65s)
✓ uploaded script
travis_fold:end:step_upload_script
travis_fold:start:worker_info
Worker information
hostname: 06905234-2d79-4265-9b56-f42a8e2077a0@1.production-4-worker-org-f-2-gce
version: v4.0.0 https://github.com/travis-ci/worker/tree/e5cb567e10c0eefe380e81c9a2229ac8fb6a16ce
instance: travis-job-16ef79d6-1857-4f7d-8e34-f81e13b933dc travis-ci-garnet-trusty-1503972833 (via amqp)
startup: 6.530903424s
travis_fold:end:worker_info
travis_fold:start:system_info
Build system information
Build language: scala
Build group: deprecated-2017Q4
Build dist: trusty
Build id: 414767656
Job id: 414767660
Runtime kernel version: 4.4.0-93-generic
travis-build version: afa768cd5
Build image provisioning date and time
Tue Aug 29 02:48:34 UTC 2017
Operating System Details
Distributor ID: Ubuntu
Description: Ubuntu 14.04.5 LTS
Release: 14.04
Codename: trusty
Cookbooks Version
4642454 https://github.com/travis-ci/travis-cookbooks/tree/4642454
git version
git version 2.14.1
bash version
GNU bash, version 4.3.11(1)-release (x86_64-pc-linux-gnu)
gcc version
gcc (Ubuntu 4.8.4-2ubuntu1~14.04.3) 4.8.4
Copyright (C) 2013 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
docker version
Client:
Version: 17.03.1-ce
API version: 1.27
Go version: go1.7.5
Git commit: c6d412e
Built: Mon Mar 27 17:10:36 2017
OS/Arch: linux/amd64
Server:
Version: 17.03.1-ce
API version: 1.27 (minimum version 1.12)
Go version: go1.7.5
Git commit: c6d412e
Built: Mon Mar 27 17:10:36 2017
OS/Arch: linux/amd64
Experimental: false
clang version
clang version 3.9.0 (tags/RELEASE_390/final)
Target: x86_64-unknown-linux-gnu
Thread model: posix
InstalledDir: /usr/local/clang-3.9.0/bin
jq version
jq-1.5
bats version
Bats 0.4.0
shellcheck version
0.4.6
shfmt version
v1.3.1
ccache version
ccache version 3.1.9
Copyright (C) 2002-2007 Andrew Tridgell
Copyright (C) 2009-2011 Joel Rosdahl
This program is free software; you can redistribute it and/or modify it under
the terms of the GNU General Public License as published by the Free Software
Foundation; either version 3 of the License, or (at your option) any later
version.
cmake version
cmake version 3.2.2
CMake suite maintained and supported by Kitware (kitware.com/cmake).
heroku version
heroku-cli/6.13.19-6cd27b3 (linux-x64) node-v8.3.0
imagemagick version
Version: ImageMagick 6.7.7-10 2017-07-31 Q16 http://www.imagemagick.org
md5deep version
4.2
mercurial version
Mercurial Distributed SCM (version 4.2.2)
(see https://mercurial-scm.org for more information)
Copyright (C) 2005-2017 Matt Mackall and others
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
mysql version
mysql Ver 14.14 Distrib 5.6.33, for debian-linux-gnu (x86_64) using EditLine wrapper
openssl version
OpenSSL 1.0.1f 6 Jan 2014
packer version
Packer v1.0.2
Your version of Packer is out of date! The latest version
is 1.0.4. You can update by downloading from www.packer.io
postgresql client version
psql (PostgreSQL) 9.6.4
ragel version
Ragel State Machine Compiler version 6.8 Feb 2013
Copyright (c) 2001-2009 by Adrian Thurston
subversion version
svn, version 1.8.8 (r1568071)
compiled Aug 10 2017, 17:20:39 on x86_64-pc-linux-gnu
Copyright (C) 2013 The Apache Software Foundation.
This software consists of contributions made by many people;
see the NOTICE file for more information.
Subversion is open source software, see http://subversion.apache.org/
The following repository access (RA) modules are available:
* ra_svn : Module for accessing a repository using the svn network protocol.
- with Cyrus SASL authentication
- handles 'svn' scheme
* ra_local : Module for accessing a repository on local disk.
- handles 'file' scheme
* ra_serf : Module for accessing a repository via WebDAV protocol using serf.
- using serf 1.3.3
- handles 'http' scheme
- handles 'https' scheme
sudo version
Sudo version 1.8.9p5
Configure options: --prefix=/usr -v --with-all-insults --with-pam --with-fqdn --with-logging=syslog --with-logfac=authpriv --with-env-editor --with-editor=/usr/bin/editor --with-timeout=15 --with-password-timeout=0 --with-passprompt=[sudo] password for %p: --without-lecture --with-tty-tickets --disable-root-mailer --enable-admin-flag --with-sendmail=/usr/sbin/sendmail --with-timedir=/var/lib/sudo --mandir=/usr/share/man --libexecdir=/usr/lib/sudo --with-sssd --with-sssd-lib=/usr/lib/x86_64-linux-gnu --with-selinux
Sudoers policy plugin version 1.8.9p5
Sudoers file grammar version 43
Sudoers path: /etc/sudoers
Authentication methods: 'pam'
Syslog facility if syslog is being used for logging: authpriv
Syslog priority to use when user authenticates successfully: notice
Syslog priority to use when user authenticates unsuccessfully: alert
Send mail if the user is not in sudoers
Use a separate timestamp for each user/tty combo
Lecture user the first time they run sudo
Root may run sudo
Allow some information gathering to give useful error messages
Require fully-qualified hostnames in the sudoers file
Visudo will honor the EDITOR environment variable
Set the LOGNAME and USER environment variables
Length at which to wrap log file lines (0 for no wrap): 80
Authentication timestamp timeout: 15.0 minutes
Password prompt timeout: 0.0 minutes
Number of tries to enter a password: 3
Umask to use or 0777 to use user's: 022
Path to mail program: /usr/sbin/sendmail
Flags for mail program: -t
Address to send mail to: root
Subject line for mail messages: *** SECURITY information for %h ***
Incorrect password message: Sorry, try again.
Path to authentication timestamp dir: /var/lib/sudo
Default password prompt: [sudo] password for %p:
Default user to run commands as: root
Value to override user's $PATH with: /usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin
Path to the editor for use by visudo: /usr/bin/editor
When to require a password for 'list' pseudocommand: any
When to require a password for 'verify' pseudocommand: all
File descriptors >= 3 will be closed before executing a command
Environment variables to check for sanity:
TZ
TERM
LINGUAS
LC_*
LANGUAGE
LANG
COLORTERM
Environment variables to remove:
RUBYOPT
RUBYLIB
PYTHONUSERBASE
PYTHONINSPECT
PYTHONPATH
PYTHONHOME
TMPPREFIX
ZDOTDIR
READNULLCMD
NULLCMD
FPATH
PERL5DB
PERL5OPT
PERL5LIB
PERLLIB
PERLIO_DEBUG
JAVA_TOOL_OPTIONS
SHELLOPTS
GLOBIGNORE
PS4
BASH_ENV
ENV
TERMCAP
TERMPATH
TERMINFO_DIRS
TERMINFO
_RLD*
LD_*
PATH_LOCALE
NLSPATH
HOSTALIASES
RES_OPTIONS
LOCALDOMAIN
CDPATH
IFS
Environment variables to preserve:
JAVA_HOME
TRAVIS
CI
DEBIAN_FRONTEND
XAUTHORIZATION
XAUTHORITY
PS2
PS1
PATH
LS_COLORS
KRB5CCNAME
HOSTNAME
HOME
DISPLAY
COLORS
Locale to use while parsing sudoers: C
Directory in which to store input/output logs: /var/log/sudo-io
File in which to store the input/output log: %{seq}
Add an entry to the utmp/utmpx file when allocating a pty
PAM service name to use
PAM service name to use for login shells
Create a new PAM session for the command to run in
Maximum I/O log sequence number: 0
Local IP address and netmask pairs:
10.240.0.10/255.255.255.255
172.17.0.1/255.255.0.0
Sudoers I/O plugin version 1.8.9p5
gzip version
gzip 1.6
Copyright (C) 2007, 2010, 2011 Free Software Foundation, Inc.
Copyright (C) 1993 Jean-loup Gailly.
This is free software. You may redistribute copies of it under the terms of
the GNU General Public License <http://www.gnu.org/licenses/gpl.html>.
There is NO WARRANTY, to the extent permitted by law.
Written by Jean-loup Gailly.
zip version
Copyright (c) 1990-2008 Info-ZIP - Type 'zip "-L"' for software license.
This is Zip 3.0 (July 5th 2008), by Info-ZIP.
Currently maintained by E. Gordon. Please send bug reports to
the authors using the web page at www.info-zip.org; see README for details.
Latest sources and executables are at ftp://ftp.info-zip.org/pub/infozip,
as of above date; see http://www.info-zip.org/ for other sites.
Compiled with gcc 4.8.2 for Unix (Linux ELF) on Oct 21 2013.
Zip special compilation options:
USE_EF_UT_TIME (store Universal Time)
BZIP2_SUPPORT (bzip2 library version 1.0.6, 6-Sept-2010)
bzip2 code and library copyright (c) Julian R Seward
(See the bzip2 license for terms of use)
SYMLINK_SUPPORT (symbolic links supported)
LARGE_FILE_SUPPORT (can read and write large files on file system)
ZIP64_SUPPORT (use Zip64 to store large files in archives)
UNICODE_SUPPORT (store and read UTF-8 Unicode paths)
STORE_UNIX_UIDs_GIDs (store UID/GID sizes/values using new extra field)
UIDGID_NOT_16BIT (old Unix 16-bit UID/GID extra field not used)
[encryption, version 2.91 of 05 Jan 2007] (modified for Zip 3)
Encryption notice:
The encryption code of this program is not copyrighted and is
put in the public domain. It was originally written in Europe
and, to the best of our knowledge, can be freely distributed
in both source and object forms from any country, including
the USA under License Exception TSU of the U.S. Export
Administration Regulations (section 740.13(e)) of 6 June 2002.
Zip environment options:
ZIP: [none]
ZIPOPT: [none]
vim version
VIM - Vi IMproved 7.4 (2013 Aug 10, compiled Nov 24 2016 16:43:18)
Included patches: 1-52
Extra patches: 8.0.0056
Modified by pkg-vim-maintainers@lists.alioth.debian.org
Compiled by buildd@
Huge version without GUI. Features included (+) or not (-):
+acl +farsi +mouse_netterm +syntax
+arabic +file_in_path +mouse_sgr +tag_binary
+autocmd +find_in_path -mouse_sysmouse +tag_old_static
-balloon_eval +float +mouse_urxvt -tag_any_white
-browse +folding +mouse_xterm -tcl
++builtin_terms -footer +multi_byte +terminfo
+byte_offset +fork() +multi_lang +termresponse
+cindent +gettext -mzscheme +textobjects
-clientserver -hangul_input +netbeans_intg +title
-clipboard +iconv +path_extra -toolbar
+cmdline_compl +insert_expand -perl +user_commands
+cmdline_hist +jumplist +persistent_undo +vertsplit
+cmdline_info +keymap +postscript +virtualedit
+comments +langmap +printer +visual
+conceal +libcall +profile +visualextra
+cryptv +linebreak +python +viminfo
+cscope +lispindent -python3 +vreplace
+cursorbind +listcmds +quickfix +wildignore
+cursorshape +localmap +reltime +wildmenu
+dialog_con -lua +rightleft +windows
+diff +menu -ruby +writebackup
+digraphs +mksession +scrollbind -X11
-dnd +modify_fname +signs -xfontset
-ebcdic +mouse +smartindent -xim
+emacs_tags -mouseshape -sniff -xsmp
+eval +mouse_dec +startuptime -xterm_clipboard
+ex_extra +mouse_gpm +statusline -xterm_save
+extra_search -mouse_jsbterm -sun_workshop -xpm
system vimrc file: "$VIM/vimrc"
user vimrc file: "$HOME/.vimrc"
2nd user vimrc file: "~/.vim/vimrc"
user exrc file: "$HOME/.exrc"
fall-back for $VIM: "/usr/share/vim"
Compilation: gcc -c -I. -Iproto -DHAVE_CONFIG_H -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1
Linking: gcc -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed -o vim -lm -ltinfo -lnsl -lselinux -lacl -lattr -lgpm -ldl -L/usr/lib/python2.7/config-x86_64-linux-gnu -lpython2.7 -lpthread -ldl -lutil -lm -Xlinker -export-dynamic -Wl,-O1 -Wl,-Bsymbolic-functions
iptables version
iptables v1.4.21
curl version
curl 7.35.0 (x86_64-pc-linux-gnu) libcurl/7.35.0 OpenSSL/1.0.1f zlib/1.2.8 libidn/1.28 librtmp/2.3
wget version
GNU Wget 1.15 built on linux-gnu.
rsync version
rsync version 3.1.0 protocol version 31
gimme version
v1.2.0
nvm version
0.33.2
perlbrew version
/home/travis/perl5/perlbrew/bin/perlbrew - App::perlbrew/0.80
phpenv version
rbenv 1.1.1-4-g4ebd1bd
rvm version
rvm 1.29.2 (latest) by Michal Papis, Piotr Kuczynski, Wayne E. Seguin [https://rvm.io/]
default ruby version
ruby 2.4.1p111 (2017-03-22 revision 58053) [x86_64-linux]
CouchDB version
couchdb 1.6.1
ElasticSearch version
5.5.0
Installed Firefox version
firefox 55.0.2
MongoDB version
MongoDB 3.2.16
Pre-installed PostgreSQL versions
9.2.22
9.3.18
9.4.13
9.5.8
9.6.4
RabbitMQ Version
3.6.11
Redis version
redis-server 4.0.1
riak version
2.2.3
Pre-installed Go versions
1.7.4
ant version
Apache Ant(TM) version 1.9.3 compiled on April 8 2014
mvn version
Apache Maven 3.5.0 (ff8f5e7444045639af65f6095c62210b5713f426; 2017-04-03T19:39:06Z)
Maven home: /usr/local/maven-3.5.0
Java version: 1.8.0_144, vendor: Oracle Corporation
Java home: /usr/lib/jvm/java-8-oracle/jre
Default locale: en_US, platform encoding: UTF-8
OS name: "linux", version: "4.4.0-81-generic", arch: "amd64", family: "unix"
gradle version
------------------------------------------------------------
Gradle 4.0.1
------------------------------------------------------------
Build time: 2017-07-07 14:02:41 UTC
Revision: 38e5dc0f772daecca1d2681885d3d85414eb6826
Groovy: 2.4.11
Ant: Apache Ant(TM) version 1.9.6 compiled on June 29 2015
JVM: 1.8.0_144 (Oracle Corporation 25.144-b01)
OS: Linux 4.4.0-81-generic amd64
lein version
WARNING: You're currently running as root; probably by accident.
Press control-C to abort or Enter to continue as root.
Set LEIN_ROOT to disable this warning.
Leiningen 2.7.1 on Java 1.8.0_144 Java HotSpot(TM) 64-Bit Server VM
Pre-installed Node.js versions
v4.8.4
v6.11.2
v6.9.4
v7.4.0
v8.4
phpenv versions
system
5.6
* 5.6.31 (set by /home/travis/.phpenv/version)
7.0
7.0.22
hhvm
hhvm-stable
composer --version
Composer version 1.4.2 2017-05-17 08:17:52
Pre-installed Ruby versions
ruby-2.2.7
ruby-2.3.4
ruby-2.4.1
travis_fold:end:system_info

Network availability confirmed.
$ jdk_switcher use oraclejdk8
Switching to Oracle JDK8 (java-8-oracle), JAVA_HOME will be set to /usr/lib/jvm/java-8-oracle
Updating sbt
travis_fold:start:services
travis_time:start:00e16b6c
$ sudo service docker start
start: Job is already running: docker
travis_time:end:00e16b6c:start=1533955186065736095,finish=1533955186083951628,duration=18215533
travis_time:start:042ab636
$ sudo service mysql start
start: Job is already running: mysql
travis_time:end:042ab636:start=1533955186090949536,finish=1533955186107305138,duration=16355602
travis_fold:end:services

travis_fold:start:git.checkout
travis_time:start:0077355d
$ git clone --depth=50 --branch=ks_retry_centaur https://github.com/broadinstitute/cromwell.git broadinstitute/cromwell
Cloning into 'broadinstitute/cromwell'...
travis_time:end:0077355d:start=1533955189123130492,finish=1533955190575911376,duration=1452780884
$ cd broadinstitute/cromwell
$ git checkout -qf 24a8eb1f3902570da6e701481bce9548ddd95d38
travis_fold:end:git.checkout

Setting environment variables from repository settings
$ export COVERALLS_REPO_TOKEN=[secure]
$ export ARTIFACTORY_USERNAME=[secure]
$ export CROMWELL_SERVICE_ACCOUNT=[secure]
$ export ARTIFACTORY_PASSWORD=[secure]
$ export DOCKER_USERNAME=[secure]
$ export DOCKER_PASSWORD=[secure]
$ export encrypted_5ebd3ff04788_key=[secure]
$ export encrypted_5ebd3ff04788_iv=[secure]
$ export encrypted_5ffc1dec8cd8_key=[secure]
$ export encrypted_5ffc1dec8cd8_iv=[secure]
$ export JES_TOKEN=[secure]
Setting environment variables from .travis.yml
$ export BUILD_TYPE=centaurPapiV2
Disabling Gradle daemon
$ mkdir -p ~/.gradle && echo "org.gradle.daemon=false" >> ~/.gradle/gradle.properties
$ export JVM_OPTS=@/etc/sbt/jvmopts
$ export SBT_OPTS=@/etc/sbt/sbtopts
travis_fold:start:cache.1
Setting up build cache
$ export CASHER_DIR=$HOME/.casher
travis_time:start:15dbb8ef
$ Installing caching utilities
travis_time:end:15dbb8ef:start=1533955195432701538,finish=1533955195575812068,duration=143110530
travis_time:start:078e8924

travis_time:end:078e8924:start=1533955195583697561,finish=1533955195589754857,duration=6057296
travis_time:start:01731eac
attempting to download cache archive
fetching ks_retry_centaur/cache-linux-trusty-7db189fc17976e79bba4f4d0c504ee25c4045fd1a7288ef4df0afbe8479e432e--jdk-oraclejdk8--scala-2.12.6.tgz
fetching ks_retry_centaur/cache--jdk-oraclejdk8--scala-2.12.6.tgz
fetching develop/cache-linux-trusty-7db189fc17976e79bba4f4d0c504ee25c4045fd1a7288ef4df0afbe8479e432e--jdk-oraclejdk8--scala-2.12.6.tgz
found cache
travis_time:end:01731eac:start=1533955195597248394,finish=1533955329827208293,duration=134229959899
travis_time:start:09fb8768

travis_time:end:09fb8768:start=1533955329834294432,finish=1533955329839288593,duration=4994161
travis_time:start:2bbc3744
adding /home/travis/.ivy2/cache to cache
creating directory /home/travis/.ivy2/cache
adding /home/travis/.coursier/cache to cache
creating directory /home/travis/.coursier/cache
travis_time:end:2bbc3744:start=1533955329846264090,finish=1533955335731490287,duration=5885226197
travis_fold:end:cache.1
$ java -Xmx32m -version
java version "1.8.0_144"
Java(TM) SE Runtime Environment (build 1.8.0_144-b01)
Java HotSpot(TM) 64-Bit Server VM (build 25.144-b01, mixed mode)
$ javac -J-Xmx32m -version
javac 1.8.0_144
Using Scala 2.12.6
travis_time:start:009f4ff8
$ src/ci/bin/test.sh
CROMWELL_BUILD_IS_CI='true'
CROMWELL_BUILD_IS_CRON='false'
CROMWELL_BUILD_IS_SECURE='true'
CROMWELL_BUILD_REQUIRES_SECURE='false'
CROMWELL_BUILD_TYPE='centaurPapiV2'
CROMWELL_BUILD_BRANCH='ks_retry_centaur'
CROMWELL_BUILD_EVENT='push'
CROMWELL_BUILD_TAG=''
CROMWELL_BUILD_NUMBER='23119.4'
CROMWELL_BUILD_PROVIDER='travis'
CROMWELL_BUILD_OS='linux'
CROMWELL_BUILD_URL='https://travis-ci.org/broadinstitute/cromwell/jobs/414767660'
Unable to find image 'broadinstitute/dsde-toolbox:latest' locally
latest: Pulling from broadinstitute/dsde-toolbox
bdc9008d0fa5: Pulling fs layer
70208da92064: Pulling fs layer
a435800beb4e: Pulling fs layer
9639ad7fa924: Pulling fs layer
0ba8da226d1b: Pulling fs layer
27acbdaf564d: Pulling fs layer
f169f35fc3d9: Pulling fs layer
f25d4b4b67a2: Pulling fs layer
37753684e611: Pulling fs layer
9639ad7fa924: Waiting
0ba8da226d1b: Waiting
27acbdaf564d: Waiting
f169f35fc3d9: Waiting
f25d4b4b67a2: Waiting
37753684e611: Waiting
bdc9008d0fa5: Download complete
bdc9008d0fa5: Pull complete
a435800beb4e: Download complete
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Digest: sha256:1f0982101148148808a791912a4fbd5b3f1b8317e7cb5e6b6856923871b89c8e
Status: Downloaded newer image for broadinstitute/dsde-toolbox:latest
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Using default tag: latest
latest: Pulling from library/ubuntu
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Digest: sha256:3f119dc0737f57f704ebecac8a6d8477b0f6ca1ca0332c7ee1395ed2c6a82be7
Status: Downloaded newer image for ubuntu:latest
Warning: Using a password on the command line interface can be insecure.
find: `/home/travis/build/broadinstitute/cromwell/server/target/scala-2.12': No such file or directory
Please wait, building jars…
Downloading sbt launcher for 1.1.5:
From http://repo.scala-sbt.org/scalasbt/maven-releases/org/scala-sbt/sbt-launch/1.1.5/sbt-launch.jar
To /home/travis/.sbt/launchers/1.1.5/sbt-launch.jar
Java HotSpot(TM) 64-Bit Server VM warning: ignoring option MaxPermSize=512M; support was removed in 8.0
Getting org.scala-sbt sbt 1.1.5 (this may take some time)...
:: retrieving :: org.scala-sbt#boot-app
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Getting Scala 2.12.6 (for sbt)...
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Checked https://repo1.maven.org/maven2/com/google/guava/guava-gwt/maven-metadata.xml.sha1
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……………………………Java HotSpot(TM) 64-Bit Server VM warning: ignoring option MaxPermSize=512M; support was removed in 8.0
[info] Loading project definition from /home/travis/build/broadinstitute/cromwell/project/project
[info] Loading settings from plugins.sbt,swagger2markup.sbt ...
[info] Loading project definition from /home/travis/build/broadinstitute/cromwell/project
[info] Loading settings from build.sbt ...
[info] Resolving key references (38074 settings) ...
[info] Set current project to root (in build file:/home/travis/build/broadinstitute/cromwell/)
[info] Defining ThisBuild / coverageEnabled
[info] The new value will be used by Compile / compile / scalacOptions, awsBackend / Compile / compile / scalacOptions and 93 others.
[info]  Run `last` for details.
[info] Reapplying settings...
…[info] Set current project to root (in build file:/home/travis/build/broadinstitute/cromwell/)
[info] Compiling 1 Scala source to /home/travis/build/broadinstitute/cromwell/languageFactories/language-factory-core/target/scala-2.12/classes ...
[info] [info] Cleaning datadir [/home/travis/build/broadinstitute/cromwell/languageFactories/language-factory-core/target/scala-2.12/scoverage-data]
[info] [info] Beginning coverage instrumentation
[info] [info] Instrumentation completed [10 statements]
[info] [info] Wrote instrumentation file [/home/travis/build/broadinstitute/cromwell/languageFactories/language-factory-core/target/scala-2.12/scoverage-data/scoverage.coverage.xml]
[info] [info] Will write measurement data to [/home/travis/build/broadinstitute/cromwell/languageFactories/language-factory-core/target/scala-2.12/scoverage-data]
[info] Done compiling.
[info] Compiling 12 Scala sources to /home/travis/build/broadinstitute/cromwell/centaur/target/scala-2.12/it-classes ...
[info] Done compiling.
[success] Total time: 47 s, completed Aug 11, 2018 2:59:02 AM
Java HotSpot(TM) 64-Bit Server VM warning: ignoring option MaxPermSize=512M; support was removed in 8.0
……Running Centaur with sbt test excluding localdockertest tests
TEST_COMMAND is java -Dconfig.file=/home/travis/build/broadinstitute/cromwell/src/ci/resources/centaur_application.conf -Dcentaur.log-request-failures=true -Dcentaur.cromwell.mode=jar -Dcentaur.cromwell.jar.path=/home/travis/build/broadinstitute/cromwell/server/target/scala-2.12/cromwell-35-24a8eb1-SNAP.jar -Dcentaur.cromwell.jar.conf=/home/travis/build/broadinstitute/cromwell/src/ci/resources/papi_v2_application.conf -Dcentaur.cromwell.jar.log=/home/travis/build/broadinstitute/cromwell/logs/cromwell.log -Dcentaur.cromwell.jar.withRestart=true -Dcentaur.sendReceiveTimeout='10s' -cp /home/travis/build/broadinstitute/cromwell/centaur/target/scala-2.12/classes:/home/travis/build/broadinstitute/cromwell/cloudSupport/target/scala-2.12/classes:/home/travis/build/broadinstitute/cromwell/common/target/scala-2.12/classes:/home/travis/build/broadinstitute/cromwell/cromwellApiClient/target/scala-2.12/classes:/home/travis/build/broadinstitute/cromwell/wdl/model/draft2/target/scala-2.12/classes:/home/travis/build/broadinstitute/cromwell/wdl/transforms/shared/target/scala-2.12/classes:/home/travis/build/broadinstitute/cromwell/wdl/model/shared/target/scala-2.12/classes:/home/travis/build/broadinstitute/cromwell/wom/target/scala-2.12/classes:/home/travis/build/broadinstitute/cromwell/wdl/transforms/draft2/target/scala-2.12/classes:/home/travis/build/broadinstitute/cromwell/wdl/transforms/draft3/target/scala-2.12/classes:/home/travis/build/broadinstitute/cromwell/wdl/transforms/new-base/target/scala-2.12/classes:/home/travis/build/broadinstitute/cromwell/wdl/model/draft3/target/scala-2.12/classes:/home/travis/build/broadinstitute/cromwell/languageFactories/language-factory-core/target/scala-2.12/classes:/home/travis/build/broadinstitute/cromwell/core/target/scala-2.12/classes:/home/travis/build/broadinstitute/cromwell/womtool/target/scala-2.12/classes:/home/travis/build/broadinstitute/cromwell/languageFactories/wdl-draft2/target/scala-2.12/classes:/home/travis/build/broadinstitute/cromwell/languageFactories/wdl-draft3/target/scala-2.12/classes:/home/travis/build/broadinstitute/cromwell/languageFactories/wdl-biscayne/target/scala-2.12/classes:/home/travis/build/broadinstitute/cromwell/wdl/model/biscayne/target/scala-2.12/classes:/home/travis/build/broadinstitute/cromwell/wdl/transforms/biscayne/target/scala-2.12/classes:/home/travis/build/broadinstitute/cromwell/languageFactories/cwl-v1-0/target/scala-2.12/classes:/home/travis/build/broadinstitute/cromwell/cwl/target/scala-2.12/classes:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/software/amazon/awssdk/ses/2.0.0-preview-9/ses-2.0.0-preview-9.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/com/google/errorprone/error_prone_annotations/2.0.19/error_prone_annotations-2.0.19.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/net/sourceforge/owlapi/owlapi-impl/5.1.4/owlapi-impl-5.1.4.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/com/github/scopt/scopt_2.12/3.6.0/scopt_2.12-3.6.0.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/software/amazon/awssdk/snowball/2.0.0-preview-9/snowball-2.0.0-preview-9.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/io/circe/circe-shapes_2.12/0.9.3/circe-shapes_2.12-0.9.3.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/software/amazon/awssdk/applicationautoscaling/2.0.0-preview-9/applicationautoscaling-2.0.0-preview-9.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/org/ow2/asm/asm-util/5.0.3/asm-util-5.0.3.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/software/amazon/awssdk/opsworkscm/2.0.0-preview-9/opsworkscm-2.0.0-preview-9.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/com/google/guava/guava/22.0/guava-22.0.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/org/scalatest/scalatest_2.12/3.0.2/scalatest_2.12-3.0.2.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/org/scala-lang/modules/scala-parser-combinators_2.12/1.1.0/scala-parser-combinators_2.12-1.1.0.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/com/typesafe/akka/akka-http-core_2.12/10.1.3/akka-http-core_2.12-10.1.3.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/software/amazon/awssdk/kinesis/2.0.0-preview-9/kinesis-2.0.0-preview-9.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/io/circe/circe-jawn_2.12/0.9.3/circe-jawn_2.12-0.9.3.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/com/google/cloud/google-cloud-nio/0.52.0-alpha/google-cloud-nio-0.52.0-alpha.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/io/netty/netty-codec/4.1.22.Final/netty-codec-4.1.22.Final.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/org/scalaz/scalaz-effect_2.12/7.2.7/scalaz-effect_2.12-7.2.7.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/software/amazon/awssdk/cognitosync/2.0.0-preview-9/cognitosync-2.0.0-preview-9.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/software/amazon/awssdk/utils/2.0.0-preview-9/utils-2.0.0-preview-9.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/com/google/apis/google-api-services-compute/v1-rev152-1.22.0/google-api-services-compute-v1-rev152-1.22.0.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/com/github/ben-manes/caffeine/caffeine/2.5.6/caffeine-2.5.6.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/software/amazon/awssdk/cloudfront/2.0.0-preview-9/cloudfront-2.0.0-preview-9.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/com/google/inject/extensions/guice-multibindings/4.1.0/guice-multibindings-4.1.0.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/com/google/apis/google-api-services-servicemanagement/v1-rev359-1.22.0/google-api-services-servicemanagement-v1-rev359-1.22.0.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/software/amazon/awssdk/shield/2.0.0-preview-9/shield-2.0.0-preview-9.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/software/amazon/awssdk/sts/2.0.0-preview-9/sts-2.0.0-preview-9.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/org/scalacheck/scalacheck_2.12/1.13.4/scalacheck_2.12-1.13.4.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/software/amazon/awssdk/directconnect/2.0.0-preview-9/directconnect-2.0.0-preview-9.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/org/pegdown/pegdown/1.6.0/pegdown-1.6.0.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/org/specs2/specs2-core_2.12/3.8.9/specs2-core_2.12-3.8.9.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/org/scalaz/scalaz-core_2.12/7.2.17/scalaz-core_2.12-7.2.17.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/software/amazon/awssdk/dms/2.0.0-preview-9/dms-2.0.0-preview-9.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/io/grpc/grpc-context/1.12.0/grpc-context-1.12.0.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/org/reactivestreams/reactive-streams/1.0.1/reactive-streams-1.0.1.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/org/eclipse/rdf4j/rdf4j-rio-trix/2.2.2/rdf4j-rio-trix-2.2.2.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/software/amazon/awssdk/polly/2.0.0-preview-9/polly-2.0.0-preview-9.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/software/amazon/awssdk/budgets/2.0.0-preview-9/budgets-2.0.0-preview-9.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/io/netty/netty-handler/4.1.22.Final/netty-handler-4.1.22.Final.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/software/amazon/awssdk/rds/2.0.0-preview-9/rds-2.0.0-preview-9.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/software/amazon/awssdk/core/2.0.0-preview-9/core-2.0.0-preview-9.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/software/amazon/awssdk/sns/2.0.0-preview-9/sns-2.0.0-preview-9.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/software/amazon/awssdk/stepfunctions/2.0.0-preview-9/stepfunctions-2.0.0-preview-9.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/org/parboiled/parboiled-java/1.1.7/parboiled-java-1.1.7.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/org/codehaus/janino/commons-compiler/3.0.7/commons-compiler-3.0.7.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/com/google/apis/google-api-services-bigquery/v2-rev367-1.22.0/google-api-services-bigquery-v2-rev367-1.22.0.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/com/github/jsonld-java/jsonld-java/0.11.1/jsonld-java-0.11.1.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/org/eclipse/xtext/org.eclipse.xtext.xbase.lib.gwt/2.13.0/org.eclipse.xtext.xbase.lib.gwt-2.13.0.jar:/home/travis/.coursier/cache/v1/https/[secure]%40broadinstitute.jfrog.io/broadinstitute/libs-release/org/broadinstitute/cromwell-google-api-services-genomics/v1alpha2-rev495-1.23.0/cromwell-google-api-services-genomics-v1alpha2-rev495-1.23.0.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/io/sentry/sentry/1.7.5/sentry-1.7.5.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/org/eclipse/xtext/org.eclipse.xtext.xbase.lib/2.13.0/org.eclipse.xtext.xbase.lib-2.13.0.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/org/eclipse/rdf4j/rdf4j-rio-api/2.2.2/rdf4j-rio-api-2.2.2.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/org/parboiled/parboiled-core/1.1.7/parboiled-core-1.1.7.jar:/home/travis/.coursier/cache/v1/https/[secure]%40broadinstitute.jfrog.io/broadinstitute/libs-release/org/broadinstitute/dsde/workbench/workbench-util_2.12/0.3-2fc79a3/workbench-util_2.12-0.3-2fc79a3.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/org/typelevel/cats-kernel_2.12/1.0.1/cats-kernel_2.12-1.0.1.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/io/opencensus/opencensus-api/0.11.1/opencensus-api-0.11.1.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/com/typesafe/netty/netty-reactive-streams-http/2.0.0/netty-reactive-streams-http-2.0.0.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/org/scalactic/scalactic_2.12/3.0.2/scalactic_2.12-3.0.2.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/net/sourceforge/owlapi/owlapi-api/5.1.4/owlapi-api-5.1.4.jar:/home/travis/.coursier/cache/v1/https/repo1.mave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stream/2.0.0-preview-9/appstream-2.0.0-preview-9.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/com/google/api/grpc/proto-google-iam-v1/0.1.21/proto-google-iam-v1-0.1.21.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/org/specs2/specs2-mock_2.12/3.8.9/specs2-mock_2.12-3.8.9.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/com/google/apis/google-api-services-iam/v1-rev215-1.22.0/google-api-services-iam-v1-rev215-1.22.0.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/eu/timepit/refined_2.12/0.8.3/refined_2.12-0.8.3.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/net/sourceforge/owlapi/owlapi-oboformat/5.1.4/owlapi-oboformat-5.1.4.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/io/circe/circe-refined_2.12/0.9.3/circe-refined_2.12-0.9.3.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/io/grpc/grpc-core/1.12.0/grpc-core-1.12.0.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/com/typesafe/scala-logging/scala-logging_2.12/3.7.1/scala-logging_2.12-3.7.1.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/io/opencensus/opencensus-contrib-grpc-metrics/0.11.0/opencensus-contrib-grpc-metrics-0.11.0.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/com/google/apis/google-api-services-cloudresourcemanager/v1-rev446-1.22.0/google-api-services-cloudresourcemanager-v1-rev446-1.22.0.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/com/google/auth/google-auth-library-credentials/0.8.0/google-auth-library-credentials-0.8.0.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/software/amazon/awssdk/xray/2.0.0-preview-9/xray-2.0.0-preview-9.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/nl/grons/metrics-scala_2.12/3.5.6/metrics-scala_2.12-3.5.6.jar:/home/travis/.coursier/cache/v1/https/[secure]%40broadinstitute.jfrog.io/broadinstitute/libs-release/org/broadinstitute/dsde/workbench/workbench-model_2.12/0.10-2fc79a3/workbench-model_2.12-0.10-2fc79a3.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/software/amazon/awssdk/acm/2.0.0-preview-9/acm-2.0.0-preview-9.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/io/netty/netty-codec-dns/4.1.22.Final/netty-codec-dns-4.1.22.Final.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/io/netty/netty-codec-http/4.1.22.Final/netty-codec-http-4.1.22.Final.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/software/amazon/awssdk/dax/2.0.0-preview-9/dax-2.0.0-preview-9.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/software/amazon/awssdk/clouddirectory/2.0.0-preview-9/clouddirectory-2.0.0-preview-9.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/org/apache/httpcomponents/httpclient/4.5.3/httpclient-4.5.3.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/software/amazon/awssdk/costandusagereport/2.0.0-preview-9/costandusagereport-2.0.0-preview-9.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/com/typesafe/akka/akka-http_2.12/10.1.3/akka-http_2.12-10.1.3.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/com/google/apis/google-api-services-cloudkms/v1-rev26-1.23.0/google-api-services-cloudkms-v1-rev26-1.23.0.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/org/scoverage/scalac-scoverage-runtime_2.12/1.3.1/scalac-scoverage-runtime_2.12-1.3.1.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/software/amazon/awssdk/elasticbeanstalk/2.0.0-preview-9/elasticbeanstalk-2.0.0-preview-9.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/ch/qos/logback/logback-access/1.2.3/logback-access-1.2.3.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/org/tukaani/xz/1.6/xz-1.6.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/com/typesafe/ssl-config-core_2.12/0.2.3/ssl-config-core_2.12-0.2.3.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/software/amazon/awssdk/efs/2.0.0-preview-9/efs-2.0.0-preview-9.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/org/eclipse/rdf4j/rdf4j-rio-datatypes/2.2.2/rdf4j-rio-datatypes-2.2.2.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/org/ow2/asm/asm-tree/5.0.3/asm-tree-5.0.3.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/com/github/kxbmap/configs_2.12/0.4.4/configs_2.12-0.4.4.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/org/typelevel/catalysts-platform_2.12/0.0.5/catalysts-platform_2.12-0.0.5.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/com/google/api-client/google-api-client/1.23.0/google-api-client-1.23.0.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/software/amazon/awssdk/support/2.0.0-preview-9/support-2.0.0-preview-9.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/org/apache/tika/tika-core/1.5/tika-core-1.5.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/org/scala-graph/graph-core_2.12/1.12.0/graph-core_2.12-1.12.0.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/com/google/inject/extensions/guice-assistedinject/4.1.0/guice-assistedinject-4.1.0.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/io/spray/spray-json_2.12/1.3.3/spray-json_2.12-1.3.3.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/org/eclipse/rdf4j/rdf4j-rio-rdfjson/2.2.2/rdf4j-rio-rdfjson-2.2.2.jar:/home/travis/.coursier/cache/v1/https/repo1.maven.org/maven2/software/amazon/awssdk/events/2.0.0-preview-9/events-2.0.0-preview-9.jar org.scalatest.tools.Runner -R centaur/target/scala-2.12/it-classes -oD -u target/test-reports -PS100 -l localdockertest
Discovery starting.
Starting Cromwell...
2018-08-11 03:00:30,822 INFO - Running with database db.url = jdbc:mysql://localhost:3306/cromwell_test?useSSL=false&rewriteBatchedStatements=true
Waiting for Cromwell...
Waiting for Cromwell...
Waiting for Cromwell...
Waiting for Cromwell...
Waiting for Cromwell...
Waiting for Cromwell...
Waiting for Cromwell...
Waiting for Cromwell...
…2018-08-11 03:01:10,220 INFO - Successfully acquired change log lock
Waiting for Cromwell...
Waiting for Cromwell...
Waiting for Cromwell...
2018-08-11 03:01:24,349 INFO - Creating database history table with name: cromwell_test.DATABASECHANGELOG
2018-08-11 03:01:24,393 INFO - Reading from cromwell_test.DATABASECHANGELOG
2018-08-11 03:01:25,848 WARN - modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
2018-08-11 03:01:25,899 WARN - modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
2018-08-11 03:01:25,923 WARN - modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
2018-08-11 03:01:25,931 WARN - modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
2018-08-11 03:01:25,933 WARN - modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
2018-08-11 03:01:25,934 WARN - modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
2018-08-11 03:01:25,935 WARN - modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
2018-08-11 03:01:25,943 WARN - modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
2018-08-11 03:01:25,944 WARN - modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
2018-08-11 03:01:25,945 WARN - modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
2018-08-11 03:01:25,946 WARN - modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
2018-08-11 03:01:25,947 WARN - modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
2018-08-11 03:01:25,948 WARN - modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
2018-08-11 03:01:25,997 INFO - changelog.xml: changesets/db_schema.xml::db_schema_other_table_alldb::scottfrazer: Table WORKFLOW_EXECUTION created
2018-08-11 03:01:26,025 INFO - changelog.xml: changesets/db_schema.xml::db_schema_other_table_alldb::scottfrazer: Table EXECUTION created
2018-08-11 03:01:26,046 INFO - changelog.xml: changesets/db_schema.xml::db_schema_other_table_alldb::scottfrazer: Table JES_JOB created
2018-08-11 03:01:26,063 INFO - changelog.xml: changesets/db_schema.xml::db_schema_other_table_alldb::scottfrazer: Table LOCAL_JOB created
2018-08-11 03:01:26,064 INFO - changelog.xml: changesets/db_schema.xml::db_schema_other_table_alldb::scottfrazer: ChangeSet changesets/db_schema.xml::db_schema_other_table_alldb::scottfrazer ran successfully in 113ms
2018-08-11 03:01:26,222 INFO - changelog.xml: changesets/db_schema.xml::db_schema_symbol_table_mysql::scottfrazer: Table SYMBOL created
2018-08-11 03:01:26,223 INFO - changelog.xml: changesets/db_schema.xml::db_schema_symbol_table_mysql::scottfrazer: ChangeSet changesets/db_schema.xml::db_schema_symbol_table_mysql::scottfrazer ran successfully in 38ms
2018-08-11 03:01:26,284 INFO - changelog.xml: changesets/db_schema.xml::db_schema_constraints::scottfrazer: Index STATUS_IDX created
2018-08-11 03:01:26,332 INFO - changelog.xml: changesets/db_schema.xml::db_schema_constraints::scottfrazer: Foreign key constraint added to SYMBOL (WORKFLOW_EXECUTION_ID)
2018-08-11 03:01:26,360 INFO - changelog.xml: changesets/db_schema.xml::db_schema_constraints::scottfrazer: Foreign key constraint added to EXECUTION (WORKFLOW_EXECUTION_ID)
2018-08-11 03:01:26,384 INFO - changelog.xml: changesets/db_schema.xml::db_schema_constraints::scottfrazer: Foreign key constraint added to JES_JOB (EXECUTION_ID)
2018-08-11 03:01:26,409 INFO - changelog.xml: changesets/db_schema.xml::db_schema_constraints::scottfrazer: Foreign key constraint added to LOCAL_JOB (EXECUTION_ID)
2018-08-11 03:01:26,410 INFO - changelog.xml: changesets/db_schema.xml::db_schema_constraints::scottfrazer: ChangeSet changesets/db_schema.xml::db_schema_constraints::scottfrazer ran successfully in 150ms
2018-08-11 03:01:26,507 INFO - changelog.xml: changesets/symbol_iteration_null.xml::symbol_iteration_null::kshakir: Null constraint dropped from SYMBOL.ITERATION
2018-08-11 03:01:26,508 INFO - changelog.xml: changesets/symbol_iteration_null.xml::symbol_iteration_null::kshakir: ChangeSet changesets/symbol_iteration_null.xml::symbol_iteration_null::kshakir ran successfully in 36ms
2018-08-11 03:01:26,554 INFO - changelog.xml: changesets/wdl_and_inputs.xml::WORKFLOW_EXECUTION_AUX::mcovarr: Table WORKFLOW_EXECUTION_AUX created
2018-08-11 03:01:26,554 INFO - changelog.xml: changesets/wdl_and_inputs.xml::WORKFLOW_EXECUTION_AUX::mcovarr: ChangeSet changesets/wdl_and_inputs.xml::WORKFLOW_EXECUTION_AUX::mcovarr ran successfully in 30ms
2018-08-11 03:01:26,605 INFO - changelog.xml: changesets/wdl_and_inputs.xml::WE_AUX_CONSTRAINTS::mcovarr: Foreign key constraint added to WORKFLOW_EXECUTION_AUX (WORKFLOW_EXECUTION_ID)
2018-08-11 03:01:27,224 INFO - changelog.xml: changesets/wdl_and_inputs.xml::WE_AUX_CONSTRAINTS::mcovarr: Unique constraint added to WORKFLOW_EXECUTION_AUX(WORKFLOW_EXECUTION_ID)
2018-08-11 03:01:27,226 INFO - changelog.xml: changesets/wdl_and_inputs.xml::WE_AUX_CONSTRAINTS::mcovarr: ChangeSet changesets/wdl_and_inputs.xml::WE_AUX_CONSTRAINTS::mcovarr ran successfully in 651ms
2018-08-11 03:01:27,283 INFO - changelog.xml: changesets/drop_workflow_uri_and_local_command.xml::drop_workflow_uri_and_local_command::kshakir: Column WORKFLOW_EXECUTION.WDL_URI dropped
2018-08-11 03:01:27,304 INFO - changelog.xml: changesets/drop_workflow_uri_and_local_command.xml::drop_workflow_uri_and_local_command::kshakir: Column LOCAL_JOB.COMMAND dropped
2018-08-11 03:01:27,306 INFO - changelog.xml: changesets/drop_workflow_uri_and_local_command.xml::drop_workflow_uri_and_local_command::kshakir: ChangeSet changesets/drop_workflow_uri_and_local_command.xml::drop_workflow_uri_and_local_command::kshakir ran successfully in 46ms
2018-08-11 03:01:27,353 INFO - changelog.xml: changesets/local_job_allow_null.xml::local_job_allow_null::kshakir: Null constraint dropped from LOCAL_JOB.PID
2018-08-11 03:01:27,358 INFO - changelog.xml: changesets/local_job_allow_null.xml::local_job_allow_null::kshakir: Null constraint dropped from LOCAL_JOB.RC
2018-08-11 03:01:27,358 INFO - changelog.xml: changesets/local_job_allow_null.xml::local_job_allow_null::kshakir: ChangeSet changesets/local_job_allow_null.xml::local_job_allow_null::kshakir ran successfully in 30ms
2018-08-11 03:01:27,424 INFO - changelog.xml: changesets/symbol_iteration_not_null.xml::symbol_iteration_not_null::kshakir: Null constraint has been added to SYMBOL.ITERATION
2018-08-11 03:01:27,424 INFO - changelog.xml: changesets/symbol_iteration_not_null.xml::symbol_iteration_not_null::kshakir: ChangeSet changesets/symbol_iteration_not_null.xml::symbol_iteration_not_null::kshakir ran successfully in 42ms
2018-08-11 03:01:27,454 INFO - changelog.xml: changesets/add_unique_constraints.xml::add_unique_constraints::kshakir: Unique constraint added to WORKFLOW_EXECUTION(WORKFLOW_EXECUTION_UUID)
2018-08-11 03:01:27,468 INFO - changelog.xml: changesets/add_unique_constraints.xml::add_unique_constraints::kshakir: Unique constraint added to EXECUTION(WORKFLOW_EXECUTION_ID, CALL_FQN)
2018-08-11 03:01:27,485 INFO - changelog.xml: changesets/add_unique_constraints.xml::add_unique_constraints::kshakir: Unique constraint added to SYMBOL(WORKFLOW_EXECUTION_ID, SCOPE, NAME, ITERATION, IO)
2018-08-11 03:01:27,498 INFO - changelog.xml: changesets/add_unique_constraints.xml::add_unique_constraints::kshakir: Unique constraint added to LOCAL_JOB(EXECUTION_ID)
2018-08-11 03:01:27,509 INFO - changelog.xml: changesets/add_unique_constraints.xml::add_unique_constraints::kshakir: Unique constraint added to JES_JOB(EXECUTION_ID)
2018-08-11 03:01:27,510 INFO - changelog.xml: changesets/add_unique_constraints.xml::add_unique_constraints::kshakir: ChangeSet changesets/add_unique_constraints.xml::add_unique_constraints::kshakir ran successfully in 77ms
2018-08-11 03:01:27,574 INFO - changelog.xml: changesets/lengthen_wdl_value.xml::LENGTHEN_WDL_VALUE::sfrazer: SYMBOL.WDL_VALUE datatype was changed to LONGTEXT
2018-08-11 03:01:27,576 INFO - changelog.xml: changesets/lengthen_wdl_value.xml::LENGTHEN_WDL_VALUE::sfrazer: ChangeSet changesets/lengthen_wdl_value.xml::LENGTHEN_WDL_VALUE::sfrazer ran successfully in 35ms
2018-08-11 03:01:27,606 INFO - changelog.xml: changesets/add_index_in_execution.xml::add-index-in-execution::tjeandet: Columns INDEX(INT) added to EXECUTION
2018-08-11 03:01:27,633 INFO - changelog.xml: changesets/add_index_in_execution.xml::add-index-in-execution::tjeandet: Null constraint has been added to EXECUTION.INDEX
2018-08-11 03:01:27,633 INFO - changelog.xml: changesets/add_index_in_execution.xml::add-index-in-execution::tjeandet: ChangeSet changesets/add_index_in_execution.xml::add-index-in-execution::tjeandet ran successfully in 49ms
2018-08-11 03:01:27,660 INFO - changelog.xml: changesets/rename_iteration_to_index.xml::rename-iteration-to-index::tjeandet: Column SYMBOL.ITERATION renamed to INDEX
2018-08-11 03:01:27,661 INFO - changelog.xml: changesets/rename_iteration_to_index.xml::rename-iteration-to-index::tjeandet: ChangeSet changesets/rename_iteration_to_index.xml::rename-iteration-to-index::tjeandet ran successfully in 24ms
2018-08-11 03:01:27,709 INFO - changelog.xml: changesets/sge.xml::sge::scottfrazer: Table SGE_JOB created
2018-08-11 03:01:27,710 INFO - changelog.xml: changesets/sge.xml::sge::scottfrazer: ChangeSet changesets/sge.xml::sge::scottfrazer ran successfully in 24ms
2018-08-11 03:01:27,780 INFO - changelog.xml: changesets/sge.xml::db_schema_constraints::scottfrazer: Foreign key constraint added to SGE_JOB (EXECUTION_ID)
2018-08-11 03:01:27,781 INFO - changelog.xml: changesets/sge.xml::db_schema_constraints::scottfrazer: ChangeSet changesets/sge.xml::db_schema_constraints::scottfrazer ran successfully in 38ms
2018-08-11 03:01:27,821 INFO - changelog.xml: changesets/change_execution_unique_constraint.xml::change_execution_unique_constraint::tjeandet: Foreign key FK_EXECUTION_WORKFLOW_EXECUTION_ID dropped
2018-08-11 03:01:27,853 INFO - changelog.xml: changesets/change_execution_unique_constraint.xml::change_execution_unique_constraint::tjeandet: Unique constraint UK_EX_WORKFLOW_EXECUTION_ID dropped from EXECUTION
2018-08-11 03:01:27,882 INFO - changelog.xml: changesets/change_execution_unique_constraint.xml::change_execution_unique_constraint::tjeandet: Unique constraint added to EXECUTION(WORKFLOW_EXECUTION_ID, CALL_FQN, INDEX)
2018-08-11 03:01:27,916 INFO - changelog.xml: changesets/change_execution_unique_constraint.xml::change_execution_unique_constraint::tjeandet: Foreign key constraint added to EXECUTION (WORKFLOW_EXECUTION_ID)
Waiting for Cromwell...
2018-08-11 03:01:27,938 INFO - changelog.xml: changesets/change_execution_unique_constraint.xml::change_execution_unique_constraint::tjeandet: Column EXECUTION.INDEX renamed to IDX
2018-08-11 03:01:27,948 INFO - changelog.xml: changesets/change_execution_unique_constraint.xml::change_execution_unique_constraint::tjeandet: ChangeSet changesets/change_execution_unique_constraint.xml::change_execution_unique_constraint::tjeandet ran successfully in 144ms
2018-08-11 03:01:27,989 INFO - changelog.xml: changesets/rc.xml::rc::mcovarr: Column LOCAL_JOB.RC dropped
2018-08-11 03:01:28,010 INFO - changelog.xml: changesets/rc.xml::rc::mcovarr: Columns RC(INT) added to EXECUTION
2018-08-11 03:01:28,013 INFO - changelog.xml: changesets/rc.xml::rc::mcovarr: ChangeSet changesets/rc.xml::rc::mcovarr ran successfully in 41ms
2018-08-11 03:01:28,078 INFO - changelog.xml: changesets/workflow_options.xml::workflow-options::sfrazer: Columns WORKFLOW_OPTIONS(LONGTEXT) added to WORKFLOW_EXECUTION_AUX
2018-08-11 03:01:28,079 INFO - changelog.xml: changesets/workflow_options.xml::workflow-options::sfrazer: ChangeSet changesets/workflow_options.xml::workflow-options::sfrazer ran successfully in 24ms
2018-08-11 03:01:28,141 INFO - changelog.xml: changesets/jes_id_update.xml::jes_id_update::chrisl: JES_JOB.JES_ID datatype was changed to VARCHAR(100)
2018-08-11 03:01:28,162 INFO - changelog.xml: changesets/jes_id_update.xml::jes_id_update::chrisl: JES_JOB.JES_STATUS datatype was changed to VARCHAR(100)
2018-08-11 03:01:28,163 INFO - changelog.xml: changesets/jes_id_update.xml::jes_id_update::chrisl: ChangeSet changesets/jes_id_update.xml::jes_id_update::chrisl ran successfully in 50ms
2018-08-11 03:01:28,190 INFO - changelog.xml: changesets/optional_sge_ids.xml::optional_sge_ids::chrisl: SGE_JOB.SGE_JOB_NUMBER datatype was changed to INT
2018-08-11 03:01:28,190 INFO - changelog.xml: changesets/optional_sge_ids.xml::optional_sge_ids::chrisl: ChangeSet changesets/optional_sge_ids.xml::optional_sge_ids::chrisl ran successfully in 23ms
2018-08-11 03:01:28,217 INFO - changelog.xml: changesets/add_start_end_time_in_execution.xml::add-start-end-time-in-execution::jgentry: Columns START_DT(datetime) added to EXECUTION
2018-08-11 03:01:28,242 INFO - changelog.xml: changesets/add_start_end_time_in_execution.xml::add-start-end-time-in-execution::jgentry: Columns END_DT(datetime) added to EXECUTION
2018-08-11 03:01:28,243 INFO - changelog.xml: changesets/add_start_end_time_in_execution.xml::add-start-end-time-in-execution::jgentry: ChangeSet changesets/add_start_end_time_in_execution.xml::add-start-end-time-in-execution::jgentry ran successfully in 46ms
2018-08-11 03:01:28,262 INFO - changelog.xml: changesets/rename_jes_id.xml::rename-jes-id-to-jes-run-id::sfrazer: Column JES_JOB.JES_ID renamed to JES_RUN_ID
2018-08-11 03:01:28,262 INFO - changelog.xml: changesets/rename_jes_id.xml::rename-jes-id-to-jes-run-id::sfrazer: ChangeSet changesets/rename_jes_id.xml::rename-jes-id-to-jes-run-id::sfrazer ran successfully in 15ms
2018-08-11 03:01:28,307 INFO - changelog.xml: changesets/add_workflow_name.xml::workflow-name::mcovarr: Columns WORKFLOW_NAME(VARCHAR(500)) added to WORKFLOW_EXECUTION
2018-08-11 03:01:28,308 INFO - changelog.xml: changesets/add_workflow_name.xml::workflow-name::mcovarr: ChangeSet changesets/add_workflow_name.xml::workflow-name::mcovarr ran successfully in 40ms
2018-08-11 03:01:28,344 INFO - changelog.xml: changesets/top_level_output.xml::top_level_output::chrisl: Columns REPORTABLE_RESULT(TINYINT) added to SYMBOL
2018-08-11 03:01:28,345 INFO - changelog.xml: changesets/top_level_output.xml::top_level_output::chrisl: ChangeSet changesets/top_level_output.xml::top_level_output::chrisl ran successfully in 20ms
2018-08-11 03:01:28,387 INFO - changelog.xml: changesets/workflow_execution_aux_not_null.xml::workflow_execution_aux_not_null::tjeandet: Null constraint has been added to WORKFLOW_EXECUTION_AUX.WORKFLOW_EXECUTION_ID
2018-08-11 03:01:28,403 INFO - changelog.xml: changesets/workflow_execution_aux_not_null.xml::workflow_execution_aux_not_null::tjeandet: Null constraint has been added to WORKFLOW_EXECUTION_AUX.WDL_SOURCE
2018-08-11 03:01:28,425 INFO - changelog.xml: changesets/workflow_execution_aux_not_null.xml::workflow_execution_aux_not_null::tjeandet: Null constraint has been added to WORKFLOW_EXECUTION_AUX.JSON_INPUTS
2018-08-11 03:01:28,442 INFO - changelog.xml: changesets/workflow_execution_aux_not_null.xml::workflow_execution_aux_not_null::tjeandet: Null constraint has been added to WORKFLOW_EXECUTION_AUX.WORKFLOW_OPTIONS
2018-08-11 03:01:28,442 INFO - changelog.xml: changesets/workflow_execution_aux_not_null.xml::workflow_execution_aux_not_null::tjeandet: ChangeSet changesets/workflow_execution_aux_not_null.xml::workflow_execution_aux_not_null::tjeandet ran successfully in 90ms
2018-08-11 03:01:28,483 INFO - changelog.xml: changesets/call_result_caching.xml::call_result_caching::chrisl: Columns ALLOWS_RESULT_REUSE(TINYINT),DOCKER_IMAGE_HASH(VARCHAR(100)),RESULTS_CLONED_FROM(INT),EXECUTION_HASH(VARCHAR(100)) added to EXECUTION
2018-08-11 03:01:28,495 INFO - changelog.xml: changesets/call_result_caching.xml::call_result_caching::chrisl: Index HASH_INDEX created
2018-08-11 03:01:28,515 INFO - changelog.xml: changesets/call_result_caching.xml::call_result_caching::chrisl: Columns HASH(VARCHAR(100)) added to SYMBOL
2018-08-11 03:01:28,551 INFO - changelog.xml: changesets/call_result_caching.xml::call_result_caching::chrisl: Foreign key constraint added to EXECUTION (RESULTS_CLONED_FROM)
2018-08-11 03:01:28,551 INFO - changelog.xml: changesets/call_result_caching.xml::call_result_caching::chrisl: ChangeSet changesets/call_result_caching.xml::call_result_caching::chrisl ran successfully in 90ms
2018-08-11 03:01:28,590 INFO - changelog.xml: changesets/events_table.xml::execution_event_table::chrisl: Table EXECUTION_EVENT created
2018-08-11 03:01:28,616 INFO - changelog.xml: changesets/events_table.xml::execution_event_table::chrisl: Foreign key constraint added to EXECUTION_EVENT (EXECUTION_ID)
2018-08-11 03:01:28,628 INFO - changelog.xml: changesets/events_table.xml::execution_event_table::chrisl: Unique constraint added to EXECUTION_EVENT(EXECUTION_ID, DESCRIPTION)
2018-08-11 03:01:28,629 INFO - changelog.xml: changesets/events_table.xml::execution_event_table::chrisl: ChangeSet changesets/events_table.xml::execution_event_table::chrisl ran successfully in 68ms
2018-08-11 03:01:28,660 INFO - changelog.xml: changesets/events_table.xml::execution_event_table_milliseconds::chrisl: EXECUTION_EVENT.START_DT datatype was changed to DATETIME(6)
2018-08-11 03:01:28,689 INFO - changelog.xml: changesets/events_table.xml::execution_event_table_milliseconds::chrisl: EXECUTION_EVENT.END_DT datatype was changed to DATETIME(6)
2018-08-11 03:01:28,690 INFO - changelog.xml: changesets/events_table.xml::execution_event_table_milliseconds::chrisl: ChangeSet changesets/events_table.xml::execution_event_table_milliseconds::chrisl ran successfully in 57ms
2018-08-11 03:01:28,698 INFO - changelog.xml: changesets/sync_not_null_constraints.xml::job_not_null_columns::kshakir: Null constraint dropped from JES_JOB.JES_RUN_ID
2018-08-11 03:01:28,703 INFO - changelog.xml: changesets/sync_not_null_constraints.xml::job_not_null_columns::kshakir: Null constraint dropped from JES_JOB.JES_STATUS
2018-08-11 03:01:28,710 INFO - changelog.xml: changesets/sync_not_null_constraints.xml::job_not_null_columns::kshakir: Null constraint dropped from SGE_JOB.SGE_JOB_NUMBER
2018-08-11 03:01:28,710 INFO - changelog.xml: changesets/sync_not_null_constraints.xml::job_not_null_columns::kshakir: ChangeSet changesets/sync_not_null_constraints.xml::job_not_null_columns::kshakir ran successfully in 16ms
2018-08-11 03:01:28,748 INFO - changelog.xml: changesets/sync_not_null_constraints.xml::events_end_dt_not_null_milliseconds::kshakir: Null constraint has been added to EXECUTION_EVENT.END_DT
2018-08-11 03:01:28,748 INFO - changelog.xml: changesets/sync_not_null_constraints.xml::events_end_dt_not_null_milliseconds::kshakir: ChangeSet changesets/sync_not_null_constraints.xml::events_end_dt_not_null_milliseconds::kshakir ran successfully in 27ms
2018-08-11 03:01:28,763 INFO - changelog.xml: changesets/sge_job_execution_unique_key.xml::sge_job_execution_unique_key::kshakir: Unique constraint added to SGE_JOB(EXECUTION_ID)
2018-08-11 03:01:28,765 INFO - changelog.xml: changesets/sge_job_execution_unique_key.xml::sge_job_execution_unique_key::kshakir: ChangeSet changesets/sge_job_execution_unique_key.xml::sge_job_execution_unique_key::kshakir ran successfully in 13ms
2018-08-11 03:01:28,805 INFO - changelog.xml: changesets/add_attempt_in_execution.xml::add-attempt-in-execution::tjeandet: Columns ATTEMPT(INT) added to EXECUTION
2018-08-11 03:01:28,831 INFO - changelog.xml: changesets/add_attempt_in_execution.xml::add-attempt-in-execution::tjeandet: Null constraint has been added to EXECUTION.ATTEMPT
2018-08-11 03:01:28,839 INFO - changelog.xml: changesets/add_attempt_in_execution.xml::add-attempt-in-execution::tjeandet: Foreign key FK_EXECUTION_WORKFLOW dropped
2018-08-11 03:01:28,849 INFO - changelog.xml: changesets/add_attempt_in_execution.xml::add-attempt-in-execution::tjeandet: Unique constraint UK_WORKFLOW_CALL_INDEX dropped from EXECUTION
2018-08-11 03:01:28,859 INFO - changelog.xml: changesets/add_attempt_in_execution.xml::add-attempt-in-execution::tjeandet: Unique constraint added to EXECUTION(WORKFLOW_EXECUTION_ID, CALL_FQN, IDX, ATTEMPT)
2018-08-11 03:01:28,896 INFO - changelog.xml: changesets/add_attempt_in_execution.xml::add-attempt-in-execution::tjeandet: Foreign key constraint added to EXECUTION (WORKFLOW_EXECUTION_ID)
2018-08-11 03:01:28,897 INFO - changelog.xml: changesets/add_attempt_in_execution.xml::add-attempt-in-execution::tjeandet: ChangeSet changesets/add_attempt_in_execution.xml::add-attempt-in-execution::tjeandet ran successfully in 117ms
2018-08-11 03:01:28,920 INFO - changelog.xml: changesets/execution_backend_info.xml::CREATE_EXECUTION_INFO::mcovarr: Table EXECUTION_INFO created
2018-08-11 03:01:28,921 INFO - changelog.xml: changesets/execution_backend_info.xml::CREATE_EXECUTION_INFO::mcovarr: ChangeSet changesets/execution_backend_info.xml::CREATE_EXECUTION_INFO::mcovarr ran successfully in 16ms
2018-08-11 03:01:28,974 INFO - changelog.xml: changesets/execution_backend_info.xml::add_foreign_key_constraints::mcovarr: Foreign key constraint added to EXECUTION_INFO (EXECUTION_ID)
2018-08-11 03:01:28,974 INFO - changelog.xml: changesets/execution_backend_info.xml::add_foreign_key_constraints::mcovarr: ChangeSet changesets/execution_backend_info.xml::add_foreign_key_constraints::mcovarr ran successfully in 32ms
2018-08-11 03:01:29,005 INFO - changelog.xml: changesets/execution_backend_info.xml::add_backend_type_column::mcovarr: Columns BACKEND_TYPE(VARCHAR(255)) added to EXECUTION
2018-08-11 03:01:29,005 INFO - changelog.xml: changesets/execution_backend_info.xml::add_backend_type_column::mcovarr: ChangeSet changesets/execution_backend_info.xml::add_backend_type_column::mcovarr ran successfully in 24ms
2018-08-11 03:01:29,063 INFO - changelog.xml: changesets/execution_backend_info.xml::insert_data_from_backend_tables::mcovarr: Custom SQL executed
2018-08-11 03:01:29,064 INFO - changelog.xml: changesets/execution_backend_info.xml::insert_data_from_backend_tables::mcovarr: ChangeSet changesets/execution_backend_info.xml::insert_data_from_backend_tables::mcovarr ran successfully in 56ms
2018-08-11 03:01:29,128 INFO - changelog.xml: changesets/execution_backend_info.xml::set_backend_type::mcovarr: Custom SQL executed
2018-08-11 03:01:29,134 INFO - changelog.xml: changesets/execution_backend_info.xml::set_backend_type::mcovarr: ChangeSet changesets/execution_backend_info.xml::set_backend_type::mcovarr ran successfully in 50ms
2018-08-11 03:01:29,155 INFO - changelog.xml: changesets/execution_backend_info.xml::drop_job_tables::mcovarr: Table JES_JOB dropped
2018-08-11 03:01:29,160 INFO - changelog.xml: changesets/execution_backend_info.xml::drop_job_tables::mcovarr: Table SGE_JOB dropped
2018-08-11 03:01:29,167 INFO - changelog.xml: changesets/execution_backend_info.xml::drop_job_tables::mcovarr: Table LOCAL_JOB dropped
2018-08-11 03:01:29,168 INFO - changelog.xml: changesets/execution_backend_info.xml::drop_job_tables::mcovarr: ChangeSet changesets/execution_backend_info.xml::drop_job_tables::mcovarr ran successfully in 22ms
2018-08-11 03:01:29,198 INFO - changelog.xml: changesets/execution_backend_info.xml::execution_info_uniqueness_constraint::mcovarr: Unique constraint added to EXECUTION_INFO(EXECUTION_ID, INFO_KEY)
2018-08-11 03:01:29,198 INFO - changelog.xml: changesets/execution_backend_info.xml::execution_info_uniqueness_constraint::mcovarr: ChangeSet changesets/execution_backend_info.xml::execution_info_uniqueness_constraint::mcovarr ran successfully in 13ms
2018-08-11 03:01:29,258 INFO - changelog.xml: changesets/execution_backend_info.xml::execution_backend_type_not_null::mcovarr: Null constraint has been added to EXECUTION.BACKEND_TYPE
2018-08-11 03:01:29,259 INFO - changelog.xml: changesets/execution_backend_info.xml::execution_backend_type_not_null::mcovarr: ChangeSet changesets/execution_backend_info.xml::execution_backend_type_not_null::mcovarr ran successfully in 31ms
2018-08-11 03:01:29,292 INFO - changelog.xml: changesets/runtime_attributes_table.xml::runtime-attributes-table::tjeandet: Table RUNTIME_ATTRIBUTES created
2018-08-11 03:01:29,321 INFO - changelog.xml: changesets/runtime_attributes_table.xml::runtime-attributes-table::tjeandet: Foreign key constraint added to RUNTIME_ATTRIBUTES (EXECUTION_ID)
2018-08-11 03:01:29,330 INFO - changelog.xml: changesets/runtime_attributes_table.xml::runtime-attributes-table::tjeandet: Unique constraint added to RUNTIME_ATTRIBUTES(EXECUTION_ID, ATTRIBUTE_NAME)
2018-08-11 03:01:29,332 INFO - changelog.xml: changesets/runtime_attributes_table.xml::runtime-attributes-table::tjeandet: ChangeSet changesets/runtime_attributes_table.xml::runtime-attributes-table::tjeandet ran successfully in 70ms
2018-08-11 03:01:29,385 INFO - changelog.xml: changesets/failure_table.xml::failure_table::chrisl: Table FAILURE_EVENT created
2018-08-11 03:01:29,407 INFO - changelog.xml: changesets/failure_table.xml::failure_table::chrisl: Foreign key constraint added to FAILURE_EVENT (EXECUTION_ID)
2018-08-11 03:01:29,436 INFO - changelog.xml: changesets/failure_table.xml::failure_table::chrisl: Foreign key constraint added to FAILURE_EVENT (WORKFLOW_EXECUTION_ID)
2018-08-11 03:01:29,437 INFO - changelog.xml: changesets/failure_table.xml::failure_table::chrisl: ChangeSet changesets/failure_table.xml::failure_table::chrisl ran successfully in 82ms
2018-08-11 03:01:29,472 INFO - changelog.xml: changesets/failure_table.xml::execution_event_table_milliseconds::chrisl: FAILURE_EVENT.EVENT_TIMESTAMP datatype was changed to DATETIME(6)
2018-08-11 03:01:29,473 INFO - changelog.xml: changesets/failure_table.xml::execution_event_table_milliseconds::chrisl: ChangeSet changesets/failure_table.xml::execution_event_table_milliseconds::chrisl ran successfully in 28ms
2018-08-11 03:01:29,493 INFO - changelog.xml: changesets/metadata_journal.xml::metadata_journal::mcovarr: Table METADATA_JOURNAL created
2018-08-11 03:01:29,493 INFO - changelog.xml: changesets/metadata_journal.xml::metadata_journal::mcovarr: ChangeSet changesets/metadata_journal.xml::metadata_journal::mcovarr ran successfully in 13ms
2018-08-11 03:01:29,513 INFO - changelog.xml: changesets/metadata_journal.xml::metadata_workflow_index::mcovarr: Index METADATA_WORKFLOW_IDX created
2018-08-11 03:01:29,513 INFO - changelog.xml: changesets/metadata_journal.xml::metadata_workflow_index::mcovarr: ChangeSet changesets/metadata_journal.xml::metadata_workflow_index::mcovarr ran successfully in 11ms
2018-08-11 03:01:29,546 INFO - changelog.xml: changesets/metadata_journal.xml::metadata_job_index::mcovarr: Index METADATA_JOB_IDX created
2018-08-11 03:01:29,547 INFO - changelog.xml: changesets/metadata_journal.xml::metadata_job_index::mcovarr: ChangeSet changesets/metadata_journal.xml::metadata_job_index::mcovarr ran successfully in 31ms
2018-08-11 03:01:29,583 INFO - changelog.xml: changesets/metadata_journal.xml::metadata_job_and_key_index::mcovarr: Index METADATA_JOB_AND_KEY_IDX created
2018-08-11 03:01:29,584 INFO - changelog.xml: changesets/metadata_journal.xml::metadata_job_and_key_index::mcovarr: ChangeSet changesets/metadata_journal.xml::metadata_job_and_key_index::mcovarr ran successfully in 22ms
2018-08-11 03:01:29,645 INFO - changelog.xml: changesets/metadata_typed_values.xml::metadata_typed_values::tjeandet: Columns METADATA_VALUE_TYPE(VARCHAR(10)) added to METADATA_JOURNAL
2018-08-11 03:01:29,651 INFO - changelog.xml: changesets/metadata_typed_values.xml::metadata_typed_values::tjeandet: ChangeSet changesets/metadata_typed_values.xml::metadata_typed_values::tjeandet ran successfully in 33ms
2018-08-11 03:01:29,727 INFO - changelog.xml: changesets/workflow_metadata_summary.xml::metadata_journal_id_int_to_big_int::kshakir: METADATA_JOURNAL.METADATA_JOURNAL_ID datatype was changed to BIGINT
2018-08-11 03:01:29,763 INFO - changelog.xml: changesets/workflow_metadata_summary.xml::metadata_journal_id_int_to_big_int::kshakir: Auto-increment added to METADATA_JOURNAL.METADATA_JOURNAL_ID
2018-08-11 03:01:29,763 INFO - changelog.xml: changesets/workflow_metadata_summary.xml::metadata_journal_id_int_to_big_int::kshakir: ChangeSet changesets/workflow_metadata_summary.xml::metadata_journal_id_int_to_big_int::kshakir ran successfully in 87ms
2018-08-11 03:01:29,807 INFO - changelog.xml: changesets/workflow_metadata_summary.xml::workflow_metadata_summary::mcovarr: Table WORKFLOW_METADATA_SUMMARY created
2018-08-11 03:01:29,808 INFO - changelog.xml: changesets/workflow_metadata_summary.xml::workflow_metadata_summary::mcovarr: ChangeSet changesets/workflow_metadata_summary.xml::workflow_metadata_summary::mcovarr ran successfully in 30ms
2018-08-11 03:01:29,840 INFO - changelog.xml: changesets/workflow_metadata_summary.xml::workflow_metadata_uuid_idx::mcovarr: Unique constraint added to WORKFLOW_METADATA_SUMMARY(WORKFLOW_EXECUTION_UUID)
2018-08-11 03:01:29,840 INFO - changelog.xml: changesets/workflow_metadata_summary.xml::workflow_metadata_uuid_idx::mcovarr: ChangeSet changesets/workflow_metadata_summary.xml::workflow_metadata_uuid_idx::mcovarr ran successfully in 11ms
2018-08-11 03:01:29,890 INFO - changelog.xml: changesets/workflow_metadata_summary.xml::workflow_metadata_name_idx::mcovarr: Index WORKFLOW_METADATA_NAME_IDX created
2018-08-11 03:01:29,892 INFO - changelog.xml: changesets/workflow_metadata_summary.xml::workflow_metadata_name_idx::mcovarr: ChangeSet changesets/workflow_metadata_summary.xml::workflow_metadata_name_idx::mcovarr ran successfully in 23ms
2018-08-11 03:01:29,949 INFO - changelog.xml: changesets/workflow_metadata_summary.xml::workflow_metadata_status_idx::mcovarr: Index WORKFLOW_METADATA_STATUS_IDX created
2018-08-11 03:01:29,950 INFO - changelog.xml: changesets/workflow_metadata_summary.xml::workflow_metadata_status_idx::mcovarr: ChangeSet changesets/workflow_metadata_summary.xml::workflow_metadata_status_idx::mcovarr ran successfully in 11ms
2018-08-11 03:01:29,984 INFO - changelog.xml: changesets/metadata_journal_subsecond_timestamp.xml::metadata_journal_subsecond_timestamp::mcovarr: METADATA_JOURNAL.METADATA_TIMESTAMP datatype was changed to DATETIME(6)
2018-08-11 03:01:29,985 INFO - changelog.xml: changesets/metadata_journal_subsecond_timestamp.xml::metadata_journal_subsecond_timestamp::mcovarr: ChangeSet changesets/metadata_journal_subsecond_timestamp.xml::metadata_journal_subsecond_timestamp::mcovarr ran successfully in 33ms
2018-08-11 03:01:30,023 INFO - changelog.xml: changesets/metadata_journal_subsecond_timestamp.xml::metadata_journal_timestamp_not_null::mcovarr: Null constraint has been added to METADATA_JOURNAL.METADATA_TIMESTAMP
2018-08-11 03:01:30,023 INFO - changelog.xml: changesets/metadata_journal_subsecond_timestamp.xml::metadata_journal_timestamp_not_null::mcovarr: ChangeSet changesets/metadata_journal_subsecond_timestamp.xml::metadata_journal_timestamp_not_null::mcovarr ran successfully in 30ms
2018-08-11 03:01:30,074 INFO - changelog.xml: changesets/workflow_store.xml::WORKFLOW_STORE::chrisl: Table WORKFLOW_STORE created
2018-08-11 03:01:30,075 INFO - changelog.xml: changesets/workflow_store.xml::WORKFLOW_STORE::chrisl: ChangeSet changesets/workflow_store.xml::WORKFLOW_STORE::chrisl ran successfully in 32ms
2018-08-11 03:01:30,119 INFO - changelog.xml: changesets/workflow_store.xml::workflow_store_uuid_index::kshakir: Unique constraint added to WORKFLOW_STORE(WORKFLOW_UUID)
2018-08-11 03:01:30,119 INFO - changelog.xml: changesets/workflow_store.xml::workflow_store_uuid_index::kshakir: ChangeSet changesets/workflow_store.xml::workflow_store_uuid_index::kshakir ran successfully in 18ms
2018-08-11 03:01:30,159 INFO - changelog.xml: changesets/workflow_store.xml::workflow_store_state_index::chrisl: Index WORKFLOW_STORE_STATE_IDX created
2018-08-11 03:01:30,159 INFO - changelog.xml: changesets/workflow_store.xml::workflow_store_state_index::chrisl: ChangeSet changesets/workflow_store.xml::workflow_store_state_index::chrisl ran successfully in 16ms
2018-08-11 03:01:30,212 INFO - changelog.xml: changesets/backend_KV_Store.xml::BACKEND_KV_STORE::rmunshi: Table BACKEND_KV_STORE created
2018-08-11 03:01:30,217 INFO - changelog.xml: changesets/backend_KV_Store.xml::BACKEND_KV_STORE::rmunshi: ChangeSet changesets/backend_KV_Store.xml::BACKEND_KV_STORE::rmunshi ran successfully in 38ms
2018-08-11 03:01:30,263 INFO - changelog.xml: changesets/backend_KV_Store.xml::backend_KV_store_job_key_constraint::rmunshi: Unique constraint added to BACKEND_KV_STORE(WORKFLOW_EXECUTION_UUID, CALL_FQN, JOB_SCATTER_INDEX, JOB_RETRY_ATTEMPT, STORE_KEY)
2018-08-11 03:01:30,264 INFO - changelog.xml: changesets/backend_KV_Store.xml::backend_KV_store_job_key_constraint::rmunshi: ChangeSet changesets/backend_KV_Store.xml::backend_KV_store_job_key_constraint::rmunshi ran successfully in 19ms
2018-08-11 03:01:30,296 INFO - changelog.xml: changesets/job_store.xml::JOB_STORE::chrisl: Table JOB_STORE created
2018-08-11 03:01:30,296 INFO - changelog.xml: changesets/job_store.xml::JOB_STORE::chrisl: ChangeSet changesets/job_store.xml::JOB_STORE::chrisl ran successfully in 14ms
2018-08-11 03:01:30,353 INFO - changelog.xml: changesets/job_store.xml::job_store_uuid_index::chrisl: Index JOB_STORE_UUID_IDX created
2018-08-11 03:01:30,353 INFO - changelog.xml: changesets/job_store.xml::job_store_uuid_index::chrisl: ChangeSet changesets/job_store.xml::job_store_uuid_index::chrisl ran successfully in 19ms
2018-08-11 03:01:30,409 INFO - changelog.xml: changesets/job_store.xml::job_store_jobkey_index::chrisl: Unique constraint added to JOB_STORE(WORKFLOW_UUID, CALL_FQN, JOB_SCATTER_INDEX, JOB_RETRY_ATTEMPT)
2018-08-11 03:01:30,409 INFO - changelog.xml: changesets/job_store.xml::job_store_jobkey_index::chrisl: ChangeSet changesets/job_store.xml::job_store_jobkey_index::chrisl ran successfully in 13ms
2018-08-11 03:01:30,439 INFO - changelog.xml: changesets/callcaching.xml::call_caching_result_metainfo::chrisl: Table CALL_CACHING_RESULT_METAINFO created
2018-08-11 03:01:30,440 INFO - changelog.xml: changesets/callcaching.xml::call_caching_result_metainfo::chrisl: ChangeSet changesets/callcaching.xml::call_caching_result_metainfo::chrisl ran successfully in 15ms
2018-08-11 03:01:30,480 INFO - changelog.xml: changesets/callcaching.xml::call_caching_result_metainfo_uniqueness::chrisl: Unique constraint added to CALL_CACHING_RESULT_METAINFO(WORKFLOW_UUID, CALL_FQN, JOB_SCATTER_INDEX)
2018-08-11 03:01:30,482 INFO - changelog.xml: changesets/callcaching.xml::call_caching_result_metainfo_uniqueness::chrisl: ChangeSet changesets/callcaching.xml::call_caching_result_metainfo_uniqueness::chrisl ran successfully in 24ms
2018-08-11 03:01:30,524 INFO - changelog.xml: changesets/callcaching.xml::call_caching_hashes::chrisl: Table CALL_CACHING_HASH created
2018-08-11 03:01:30,525 INFO - changelog.xml: changesets/callcaching.xml::call_caching_hashes::chrisl: ChangeSet changesets/callcaching.xml::call_caching_hashes::chrisl ran successfully in 21ms
2018-08-11 03:01:30,568 INFO - changelog.xml: changesets/callcaching.xml::call_caching_result_hashes_uniqueness::chrisl: Unique constraint added to CALL_CACHING_HASH(HASH_KEY, RESULT_METAINFO_ID)
2018-08-11 03:01:30,568 INFO - changelog.xml: changesets/callcaching.xml::call_caching_result_hashes_uniqueness::chrisl: ChangeSet changesets/callcaching.xml::call_caching_result_hashes_uniqueness::chrisl ran successfully in 20ms
2018-08-11 03:01:30,618 INFO - changelog.xml: changesets/callcaching.xml::call_caching_result_hashes_uniqueness_foreign_key::chrisl: Foreign key constraint added to CALL_CACHING_HASH (RESULT_METAINFO_ID)
2018-08-11 03:01:30,618 INFO - changelog.xml: changesets/callcaching.xml::call_caching_result_hashes_uniqueness_foreign_key::chrisl: ChangeSet changesets/callcaching.xml::call_caching_result_hashes_uniqueness_foreign_key::chrisl ran successfully in 36ms
2018-08-11 03:01:30,634 INFO - changelog.xml: changesets/callcaching.xml::call_caching_result_simpletons::chrisl: Table CALL_CACHING_RESULT_SIMPLETON created
2018-08-11 03:01:30,635 INFO - changelog.xml: changesets/callcaching.xml::call_caching_result_simpletons::chrisl: ChangeSet changesets/callcaching.xml::call_caching_result_simpletons::chrisl ran successfully in 14ms
2018-08-11 03:01:30,685 INFO - changelog.xml: changesets/callcaching.xml::call_caching_result_simpletons_uniqueness::chrisl: Unique constraint added to CALL_CACHING_RESULT_SIMPLETON(SIMPLETON_KEY, RESULT_METAINFO_ID)
2018-08-11 03:01:30,692 INFO - changelog.xml: changesets/callcaching.xml::call_caching_result_simpletons_uniqueness::chrisl: ChangeSet changesets/callcaching.xml::call_caching_result_simpletons_uniqueness::chrisl ran successfully in 17ms
2018-08-11 03:01:30,763 INFO - changelog.xml: changesets/callcaching.xml::call_caching_result_simpletons_foreign_key::chrisl: Foreign key constraint added to CALL_CACHING_RESULT_SIMPLETON (RESULT_METAINFO_ID)
2018-08-11 03:01:30,763 INFO - changelog.xml: changesets/callcaching.xml::call_caching_result_simpletons_foreign_key::chrisl: ChangeSet changesets/callcaching.xml::call_caching_result_simpletons_foreign_key::chrisl ran successfully in 35ms
2018-08-11 03:01:30,791 INFO - changelog.xml: changesets/call_caching_allow_result_reuse_fix.xml::call_caching_fix_boolean::mcovarr: CALL_CACHING_RESULT_METAINFO.ALLOW_RESULT_REUSE datatype was changed to TINYINT
2018-08-11 03:01:30,792 INFO - changelog.xml: changesets/call_caching_allow_result_reuse_fix.xml::call_caching_fix_boolean::mcovarr: ChangeSet changesets/call_caching_allow_result_reuse_fix.xml::call_caching_fix_boolean::mcovarr ran successfully in 26ms
2018-08-11 03:01:30,804 INFO - changelog.xml: changesets/call_caching_allow_result_reuse_fix.xml::call_caching_reuse_default::mcovarr: Default value added to CALL_CACHING_RESULT_METAINFO.ALLOW_RESULT_REUSE
2018-08-11 03:01:30,805 INFO - changelog.xml: changesets/call_caching_allow_result_reuse_fix.xml::call_caching_reuse_default::mcovarr: ChangeSet changesets/call_caching_allow_result_reuse_fix.xml::call_caching_reuse_default::mcovarr ran successfully in 11ms
2018-08-11 03:01:30,861 INFO - changelog.xml: changesets/job_store_simpletons.xml::job_store_result_simpletons::mcovarr: Table JOB_STORE_RESULT_SIMPLETON created
2018-08-11 03:01:30,861 INFO - changelog.xml: changesets/job_store_simpletons.xml::job_store_result_simpletons::mcovarr: ChangeSet changesets/job_store_simpletons.xml::job_store_result_simpletons::mcovarr ran successfully in 20ms
2018-08-11 03:01:30,892 INFO - changelog.xml: changesets/job_store_simpletons.xml::job_store_result_simpletons_uniqueness::mcovarr: Unique constraint added to JOB_STORE_RESULT_SIMPLETON(SIMPLETON_KEY, JOB_STORE_ID)
2018-08-11 03:01:30,893 INFO - changelog.xml: changesets/job_store_simpletons.xml::job_store_result_simpletons_uniqueness::mcovarr: ChangeSet changesets/job_store_simpletons.xml::job_store_result_simpletons_uniqueness::mcovarr ran successfully in 16ms
2018-08-11 03:01:30,952 INFO - changelog.xml: changesets/job_store_simpletons.xml::job_store_result_simpletons_foreign_key::mcovarr: Foreign key constraint added to JOB_STORE_RESULT_SIMPLETON (JOB_STORE_ID)
2018-08-11 03:01:30,955 INFO - changelog.xml: changesets/job_store_simpletons.xml::job_store_result_simpletons_foreign_key::mcovarr: ChangeSet changesets/job_store_simpletons.xml::job_store_result_simpletons_foreign_key::mcovarr ran successfully in 41ms
2018-08-11 03:01:30,987 INFO - changelog.xml: changesets/job_store_simpletons.xml::job_store_remove_job_output::mcovarr: Column JOB_STORE.JOB_OUTPUT dropped
2018-08-11 03:01:30,988 INFO - changelog.xml: changesets/job_store_simpletons.xml::job_store_remove_job_output::mcovarr: ChangeSet changesets/job_store_simpletons.xml::job_store_remove_job_output::mcovarr ran successfully in 24ms
2018-08-11 03:01:31,029 INFO - changelog.xml: changesets/restart_and_recover_migration.xml::WORKFLOW_STORE_MIGRATION::mcovarr: Custom SQL executed
2018-08-11 03:01:31,032 INFO - changelog.xml: changesets/restart_and_recover_migration.xml::WORKFLOW_STORE_MIGRATION::mcovarr: ChangeSet changesets/restart_and_recover_migration.xml::WORKFLOW_STORE_MIGRATION::mcovarr ran successfully in 26ms
2018-08-11 03:01:31,080 INFO - changelog.xml: changesets/restart_and_recover_migration.xml::JOB_STORE_MIGRATION::mcovarr: Custom SQL executed
2018-08-11 03:01:31,089 INFO - changelog.xml: changesets/restart_and_recover_migration.xml::JOB_STORE_MIGRATION::mcovarr: ChangeSet changesets/restart_and_recover_migration.xml::JOB_STORE_MIGRATION::mcovarr ran successfully in 44ms
2018-08-11 03:01:31,228 INFO - changelog.xml: changesets/restart_and_recover_migration.xml::JOB_STORE_RESULT_SIMPLETON_VALUE_NULLABLE::mcovarr: Null constraint dropped from JOB_STORE_RESULT_SIMPLETON.SIMPLETON_VALUE
2018-08-11 03:01:31,229 INFO - changelog.xml: changesets/restart_and_recover_migration.xml::JOB_STORE_RESULT_SIMPLETON_VALUE_NULLABLE::mcovarr: ChangeSet changesets/restart_and_recover_migration.xml::JOB_STORE_RESULT_SIMPLETON_VALUE_NULLABLE::mcovarr ran successfully in 117ms
2018-08-11 03:01:31,252 INFO - changelog.xml: changesets/restart_and_recover_migration.xml::JOB_STORE_RESULT_SIMPLETON_MIGRATION::mcovarr: WORKFLOW_EXECUTION + EXECUTION + SYMBOL + JOB_STORE -> JOB_STORE_RESULT_SIMPLETON migration complete.
2018-08-11 03:01:31,260 INFO - changelog.xml: changesets/restart_and_recover_migration.xml::JOB_STORE_RESULT_SIMPLETON_MIGRATION::mcovarr: ChangeSet changesets/restart_and_recover_migration.xml::JOB_STORE_RESULT_SIMPLETON_MIGRATION::mcovarr ran successfully in 20ms
2018-08-11 03:01:31,285 INFO - changelog.xml: changesets/restart_and_recover_migration.xml::BACKEND_KV_STORE_MIGRATION::mcovarr: Custom SQL executed
2018-08-11 03:01:31,287 INFO - changelog.xml: changesets/restart_and_recover_migration.xml::BACKEND_KV_STORE_MIGRATION::mcovarr: ChangeSet changesets/restart_and_recover_migration.xml::BACKEND_KV_STORE_MIGRATION::mcovarr ran successfully in 17ms
2018-08-11 03:01:31,350 INFO - changelog.xml: changesets/restart_and_recover_migration.xml::WORKFLOW_OPTIONS_RENAME_MIGRATION::mcovarr: Workflow option renaming migration complete.
2018-08-11 03:01:31,351 INFO - changelog.xml: changesets/restart_and_recover_migration.xml::WORKFLOW_OPTIONS_RENAME_MIGRATION::mcovarr: ChangeSet changesets/restart_and_recover_migration.xml::WORKFLOW_OPTIONS_RENAME_MIGRATION::mcovarr ran successfully in 15ms
2018-08-11 03:01:31,384 INFO - changelog.xml: changesets/summary_status_table.xml::summary_status_table::kshakir: Table SUMMARY_STATUS created
2018-08-11 03:01:31,384 INFO - changelog.xml: changesets/summary_status_table.xml::summary_status_table::kshakir: ChangeSet changesets/summary_status_table.xml::summary_status_table::kshakir ran successfully in 18ms
2018-08-11 03:01:31,398 INFO - changelog.xml: changesets/summary_status_table.xml::summary_status_summarized_table_name_index::kshakir: Unique constraint added to SUMMARY_STATUS(SUMMARY_TABLE_NAME, SUMMARIZED_TABLE_NAME)
2018-08-11 03:01:31,398 INFO - changelog.xml: changesets/summary_status_table.xml::summary_status_summarized_table_name_index::kshakir: ChangeSet changesets/summary_status_table.xml::summary_status_summarized_table_name_index::kshakir ran successfully in 11ms
2018-08-11 03:01:31,436 INFO - changelog.xml: changesets/standardize_column_names.xml::workflow_execution_uuid::rmunshi: Column CALL_CACHING_RESULT_METAINFO.WORKFLOW_UUID renamed to WORKFLOW_EXECUTION_UUID
2018-08-11 03:01:31,454 INFO - changelog.xml: changesets/standardize_column_names.xml::workflow_execution_uuid::rmunshi: Column WORKFLOW_STORE.WORKFLOW_UUID renamed to WORKFLOW_EXECUTION_UUID
2018-08-11 03:01:31,472 INFO - changelog.xml: changesets/standardize_column_names.xml::workflow_execution_uuid::rmunshi: Column JOB_STORE.WORKFLOW_UUID renamed to WORKFLOW_EXECUTION_UUID
2018-08-11 03:01:31,472 INFO - changelog.xml: changesets/standardize_column_names.xml::workflow_execution_uuid::rmunshi: ChangeSet changesets/standardize_column_names.xml::workflow_execution_uuid::rmunshi ran successfully in 52ms
2018-08-11 03:01:31,513 INFO - changelog.xml: changesets/standardize_column_names.xml::call_job_identifiers::rmunshi: Column METADATA_JOURNAL.METADATA_CALL_FQN renamed to CALL_FQN
2018-08-11 03:01:31,528 INFO - changelog.xml: changesets/standardize_column_names.xml::call_job_identifiers::rmunshi: Column METADATA_JOURNAL.METADATA_CALL_INDEX renamed to JOB_SCATTER_INDEX
2018-08-11 03:01:31,543 INFO - changelog.xml: changesets/standardize_column_names.xml::call_job_identifiers::rmunshi: Column METADATA_JOURNAL.METADATA_CALL_ATTEMPT renamed to JOB_RETRY_ATTEMPT
2018-08-11 03:01:31,543 INFO - changelog.xml: changesets/standardize_column_names.xml::call_job_identifiers::rmunshi: ChangeSet changesets/standardize_column_names.xml::call_job_identifiers::rmunshi ran successfully in 59ms
2018-08-11 03:01:31,739 INFO - changelog.xml: changesets/embiggen_metadata_value.xml::entry_or_journal_existence_xor::mcovarr: ChangeSet changesets/embiggen_metadata_value.xml::entry_or_journal_existence_xor::mcovarr ran successfully in 171ms
2018-08-11 03:01:31,866 INFO - changelog.xml: changesets/embiggen_metadata_value.xml::embiggen_metadata_entry::mcovarr: Marking ChangeSet: changesets/embiggen_metadata_value.xml::embiggen_metadata_entry::mcovarr ran despite precondition failure due to onFail='MARK_RAN':
changelog.xml : Table cromwell_test.METADATA_ENTRY does not exist
2018-08-11 03:01:31,951 INFO - changelog.xml: changesets/embiggen_metadata_value.xml::embiggen_metadata_journal::mcovarr: METADATA_JOURNAL.METADATA_VALUE datatype was changed to LONGTEXT
2018-08-11 03:01:31,952 INFO - changelog.xml: changesets/embiggen_metadata_value.xml::embiggen_metadata_journal::mcovarr: ChangeSet changesets/embiggen_metadata_value.xml::embiggen_metadata_journal::mcovarr ran successfully in 55ms
2018-08-11 03:01:32,014 INFO - changelog.xml: changesets/metadata_migration.xml::setup_metadata_migration::tjeandet: SQL in file migration/metadata/CreateAndLoadTmpExecutionMigration.sql executed
2018-08-11 03:01:32,014 INFO - changelog.xml: changesets/metadata_migration.xml::setup_metadata_migration::tjeandet: ChangeSet changesets/metadata_migration.xml::setup_metadata_migration::tjeandet ran successfully in 60ms
2018-08-11 03:01:32,074 INFO - changelog.xml: changesets/metadata_migration.xml::create_tmp_symbol_for_inputs::tjeandet: SQL in file migration/metadata/CreateTmpSymbolTable.sql executed
2018-08-11 03:01:32,075 INFO - changelog.xml: changesets/metadata_migration.xml::create_tmp_symbol_for_inputs::tjeandet: ChangeSet changesets/metadata_migration.xml::create_tmp_symbol_for_inputs::tjeandet ran successfully in 44ms
2018-08-11 03:01:32,100 INFO - changelog.xml: changesets/metadata_migration.xml::load_tmp_symbol_for_inputs::tjeandet: SQL in file migration/metadata/LoadInputSymbols.sql executed
2018-08-11 03:01:32,102 INFO - changelog.xml: changesets/metadata_migration.xml::load_tmp_symbol_for_inputs::tjeandet: ChangeSet changesets/metadata_migration.xml::load_tmp_symbol_for_inputs::tjeandet ran successfully in 18ms
2018-08-11 03:01:32,146 INFO - Running migration InputSymbolTableMigration with a read batch size of 100000 and a write batch size of 100000
2018-08-11 03:01:32,319 INFO - [InputSymbolTableMigration] 100%
2018-08-11 03:01:32,321 INFO - changelog.xml: changesets/metadata_migration.xml::input_symbol_table_migration::tjeandet: Inputs from Symbol Table migration complete.
2018-08-11 03:01:32,333 INFO - changelog.xml: changesets/metadata_migration.xml::input_symbol_table_migration::tjeandet: Table TMP_SYMBOL dropped
2018-08-11 03:01:32,333 INFO - changelog.xml: changesets/metadata_migration.xml::input_symbol_table_migration::tjeandet: ChangeSet changesets/metadata_migration.xml::input_symbol_table_migration::tjeandet ran successfully in 195ms
2018-08-11 03:01:32,391 INFO - changelog.xml: changesets/metadata_migration.xml::create_tmp_symbol_for_call_outputs::tjeandet: SQL in file migration/metadata/CreateTmpSymbolTable.sql executed
2018-08-11 03:01:32,392 INFO - changelog.xml: changesets/metadata_migration.xml::create_tmp_symbol_for_call_outputs::tjeandet: ChangeSet changesets/metadata_migration.xml::create_tmp_symbol_for_call_outputs::tjeandet ran successfully in 49ms
2018-08-11 03:01:32,460 INFO - changelog.xml: changesets/metadata_migration.xml::load_tmp_symbol_for_call_outputs::tjeandet: SQL in file migration/metadata/LoadCallOutputSymbols.sql executed
2018-08-11 03:01:32,461 INFO - changelog.xml: changesets/metadata_migration.xml::load_tmp_symbol_for_call_outputs::tjeandet: ChangeSet changesets/metadata_migration.xml::load_tmp_symbol_for_call_outputs::tjeandet ran successfully in 29ms
2018-08-11 03:01:32,516 INFO - Running migration CallOutputSymbolTableMigration with a read batch size of 100000 and a write batch size of 100000
2018-08-11 03:01:32,529 INFO - [CallOutputSymbolTableMigration] 100%
2018-08-11 03:01:32,533 INFO - changelog.xml: changesets/metadata_migration.xml::call_output_symbol_table_migration::tjeandet: Call outputs from Symbol Table migration complete.
2018-08-11 03:01:32,543 INFO - changelog.xml: changesets/metadata_migration.xml::call_output_symbol_table_migration::tjeandet: Table TMP_SYMBOL dropped
2018-08-11 03:01:32,545 INFO - changelog.xml: changesets/metadata_migration.xml::call_output_symbol_table_migration::tjeandet: ChangeSet changesets/metadata_migration.xml::call_output_symbol_table_migration::tjeandet ran successfully in 35ms
2018-08-11 03:01:32,603 INFO - changelog.xml: changesets/metadata_migration.xml::create_tmp_symbol_for_workflow_outputs::tjeandet: SQL in file migration/metadata/CreateTmpSymbolTable.sql executed
2018-08-11 03:01:32,603 INFO - changelog.xml: changesets/metadata_migration.xml::create_tmp_symbol_for_workflow_outputs::tjeandet: ChangeSet changesets/metadata_migration.xml::create_tmp_symbol_for_workflow_outputs::tjeandet ran successfully in 37ms
2018-08-11 03:01:32,630 INFO - changelog.xml: changesets/metadata_migration.xml::load_tmp_symbol_for_workflow_outputs::tjeandet: SQL in file migration/metadata/LoadWorkflowOutputSymbols.sql executed
2018-08-11 03:01:32,631 INFO - changelog.xml: changesets/metadata_migration.xml::load_tmp_symbol_for_workflow_outputs::tjeandet: ChangeSet changesets/metadata_migration.xml::load_tmp_symbol_for_workflow_outputs::tjeandet ran successfully in 3ms
2018-08-11 03:01:32,643 INFO - Running migration WorkflowOutputSymbolTableMigration with a read batch size of 100000 and a write batch size of 100000
2018-08-11 03:01:32,679 INFO - [WorkflowOutputSymbolTableMigration] 100%
2018-08-11 03:01:32,680 INFO - changelog.xml: changesets/metadata_migration.xml::workflow_output_symbol_table_migration::tjeandet: Workflow outputs from Symbol Table migration complete.
2018-08-11 03:01:32,684 INFO - changelog.xml: changesets/metadata_migration.xml::workflow_output_symbol_table_migration::tjeandet: Table TMP_SYMBOL dropped
2018-08-11 03:01:32,684 INFO - changelog.xml: changesets/metadata_migration.xml::workflow_output_symbol_table_migration::tjeandet: ChangeSet changesets/metadata_migration.xml::workflow_output_symbol_table_migration::tjeandet ran successfully in 42ms
2018-08-11 03:01:32,749 INFO - changelog.xml: changesets/metadata_migration.xml::workflow_execution_table_migration::tjeandet: Workflow Execution Table migration complete.
2018-08-11 03:01:32,749 INFO - changelog.xml: changesets/metadata_migration.xml::workflow_execution_table_migration::tjeandet: ChangeSet changesets/metadata_migration.xml::workflow_execution_table_migration::tjeandet ran successfully in 62ms
2018-08-11 03:01:32,754 INFO - changelog.xml: changesets/metadata_migration.xml::workflow_execution_aux_table_migration::tjeandet: SQL in file migration/metadata/WorkflowExecutionAuxTableMigration.sql executed
2018-08-11 03:01:32,755 INFO - changelog.xml: changesets/metadata_migration.xml::workflow_execution_aux_table_migration::tjeandet: ChangeSet changesets/metadata_migration.xml::workflow_execution_aux_table_migration::tjeandet ran successfully in 4ms
2018-08-11 03:01:32,762 INFO - changelog.xml: changesets/metadata_migration.xml::execution_table_migration::tjeandet: Execution Table migration complete.
2018-08-11 03:01:32,763 INFO - changelog.xml: changesets/metadata_migration.xml::execution_table_migration::tjeandet: ChangeSet changesets/metadata_migration.xml::execution_table_migration::tjeandet ran successfully in 5ms
2018-08-11 03:01:32,766 INFO - changelog.xml: changesets/metadata_migration.xml::execution_event_table_migration_start::tjeandet: Execution Event Table (Start field) migration complete.
2018-08-11 03:01:32,767 INFO - changelog.xml: changesets/metadata_migration.xml::execution_event_table_migration_start::tjeandet: ChangeSet changesets/metadata_migration.xml::execution_event_table_migration_start::tjeandet ran successfully in 3ms
2018-08-11 03:01:32,807 INFO - changelog.xml: changesets/metadata_migration.xml::execution_event_table_migration_end::tjeandet: Execution Event Table (End field) migration complete.
2018-08-11 03:01:32,808 INFO - changelog.xml: changesets/metadata_migration.xml::execution_event_table_migration_end::tjeandet: ChangeSet changesets/metadata_migration.xml::execution_event_table_migration_end::tjeandet ran successfully in 40ms
2018-08-11 03:01:32,830 INFO - changelog.xml: changesets/metadata_migration.xml::execution_event_table_migration_description::tjeandet: Execution Event Table (Description field) migration complete.
2018-08-11 03:01:32,853 INFO - changelog.xml: changesets/metadata_migration.xml::execution_event_table_migration_description::tjeandet: ChangeSet changesets/metadata_migration.xml::execution_event_table_migration_description::tjeandet ran successfully in 28ms
2018-08-11 03:01:32,894 INFO - changelog.xml: changesets/metadata_migration.xml::execution_info_table_migration::tjeandet: SQL in file migration/metadata/ExecutionInfoTableMigration.sql executed
2018-08-11 03:01:32,896 INFO - changelog.xml: changesets/metadata_migration.xml::execution_info_table_migration::tjeandet: ChangeSet changesets/metadata_migration.xml::execution_info_table_migration::tjeandet ran successfully in 31ms
2018-08-11 03:01:32,944 INFO - changelog.xml: changesets/metadata_migration.xml::failure_event_table_migration::tjeandet: Failure Table migration complete.
2018-08-11 03:01:32,945 INFO - changelog.xml: changesets/metadata_migration.xml::failure_event_table_migration::tjeandet: ChangeSet changesets/metadata_migration.xml::failure_event_table_migration::tjeandet ran successfully in 11ms
Waiting for Cromwell...
2018-08-11 03:01:32,986 INFO - changelog.xml: changesets/metadata_migration.xml::runtime_attributes_table_migration::tjeandet: SQL in file migration/metadata/RuntimeAttributesTableMigration.sql executed
2018-08-11 03:01:32,990 INFO - changelog.xml: changesets/metadata_migration.xml::runtime_attributes_table_migration::tjeandet: ChangeSet changesets/metadata_migration.xml::runtime_attributes_table_migration::tjeandet ran successfully in 25ms
2018-08-11 03:01:33,017 INFO - changelog.xml: changesets/metadata_migration.xml::cleanup_metadata_migration::tjeandet: Table TMP_EXECUTION_MIGRATION dropped
2018-08-11 03:01:33,026 INFO - changelog.xml: changesets/metadata_migration.xml::cleanup_metadata_migration::tjeandet: ChangeSet changesets/metadata_migration.xml::cleanup_metadata_migration::tjeandet ran successfully in 19ms
2018-08-11 03:01:33,063 INFO - changelog.xml: changesets/call_caching_job_detritus.xml::call_caching_job_detritus::rmunshi: Table CALL_CACHING_JOB_DETRITUS created
2018-08-11 03:01:33,064 INFO - changelog.xml: changesets/call_caching_job_detritus.xml::call_caching_job_detritus::rmunshi: ChangeSet changesets/call_caching_job_detritus.xml::call_caching_job_detritus::rmunshi ran successfully in 20ms
2018-08-11 03:01:33,085 INFO - changelog.xml: changesets/call_caching_job_detritus.xml::call_caching_job_detritus_key_uniqueness::rmunshi: Unique constraint added to CALL_CACHING_JOB_DETRITUS(JOB_DETRITUS_KEY, RESULT_METAINFO_ID)
2018-08-11 03:01:33,087 INFO - changelog.xml: changesets/call_caching_job_detritus.xml::call_caching_job_detritus_key_uniqueness::rmunshi: ChangeSet changesets/call_caching_job_detritus.xml::call_caching_job_detritus_key_uniqueness::rmunshi ran successfully in 14ms
2018-08-11 03:01:33,125 INFO - changelog.xml: changesets/call_caching_job_detritus.xml::call_caching_job_detritus_foreign_key::rmunshi: Foreign key constraint added to CALL_CACHING_JOB_DETRITUS (RESULT_METAINFO_ID)
2018-08-11 03:01:33,125 INFO - changelog.xml: changesets/call_caching_job_detritus.xml::call_caching_job_detritus_foreign_key::rmunshi: ChangeSet changesets/call_caching_job_detritus.xml::call_caching_job_detritus_foreign_key::rmunshi ran successfully in 22ms
2018-08-11 03:01:33,165 INFO - changelog.xml: changesets/job_store_tinyints.xml::job_store_fix_job_successful::mcovarr: JOB_STORE.JOB_SUCCESSFUL datatype was changed to TINYINT
2018-08-11 03:01:33,165 INFO - changelog.xml: changesets/job_store_tinyints.xml::job_store_fix_job_successful::mcovarr: ChangeSet changesets/job_store_tinyints.xml::job_store_fix_job_successful::mcovarr ran successfully in 29ms
2018-08-11 03:01:33,195 INFO - changelog.xml: changesets/job_store_tinyints.xml::job_store_fix_job_retryable_failure::mcovarr: JOB_STORE.RETRYABLE_FAILURE datatype was changed to TINYINT
2018-08-11 03:01:33,196 INFO - changelog.xml: changesets/job_store_tinyints.xml::job_store_fix_job_retryable_failure::mcovarr: ChangeSet changesets/job_store_tinyints.xml::job_store_fix_job_retryable_failure::mcovarr ran successfully in 29ms
2018-08-11 03:01:33,234 INFO - changelog.xml: changesets/job_store_tinyints.xml::job_store_not_nullable_job_successful::mcovarr: Null constraint has been added to JOB_STORE.JOB_SUCCESSFUL
2018-08-11 03:01:33,234 INFO - changelog.xml: changesets/job_store_tinyints.xml::job_store_not_nullable_job_successful::mcovarr: ChangeSet changesets/job_store_tinyints.xml::job_store_not_nullable_job_successful::mcovarr ran successfully in 33ms
2018-08-11 03:01:33,255 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Index JOB_STORE_UUID_IDX dropped from table JOB_STORE
2018-08-11 03:01:33,269 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Index WORKFLOW_METADATA_NAME_IDX dropped from table WORKFLOW_METADATA_SUMMARY
2018-08-11 03:01:33,275 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Index WORKFLOW_METADATA_STATUS_IDX dropped from table WORKFLOW_METADATA_SUMMARY
2018-08-11 03:01:33,280 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Index WORKFLOW_STORE_STATE_IDX dropped from table WORKFLOW_STORE
2018-08-11 03:01:33,295 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Unique constraint UK_CALL_CACHING_JOB_DETRITUS_KEY dropped from CALL_CACHING_JOB_DETRITUS
2018-08-11 03:01:33,305 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Unique constraint UK_CALL_CACHING_RESULT_METAINFO dropped from CALL_CACHING_RESULT_METAINFO
2018-08-11 03:01:33,317 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Unique constraint UK_CALL_CACHING_HASH dropped from CALL_CACHING_HASH
2018-08-11 03:01:33,326 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Unique constraint UK_CALL_CACHING_RESULT_SIMPLETON dropped from CALL_CACHING_RESULT_SIMPLETON
2018-08-11 03:01:33,331 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Unique constraint JOB_STORE_JOBKEY_IDX dropped from JOB_STORE
2018-08-11 03:01:33,338 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Unique constraint UK_BACKEND_KV_STORE_KEY dropped from BACKEND_KV_STORE
2018-08-11 03:01:33,344 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Unique constraint UK_JOB_STORE_RESULT_SIMPLETON dropped from JOB_STORE_RESULT_SIMPLETON
2018-08-11 03:01:33,349 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Unique constraint SUMMARY_STATUS_SUMMARY_TABLE_NAME_SUMMARIZED_TABLE_NAME_INDEX dropped from SUMMARY_STATUS
2018-08-11 03:01:33,357 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Unique constraint WORKFLOW_METADATA_UUID_IDX dropped from WORKFLOW_METADATA_SUMMARY
2018-08-11 03:01:33,364 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Unique constraint WORKFLOW_STORE_UUID_IDX dropped from WORKFLOW_STORE
2018-08-11 03:01:33,371 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Foreign key CCJD_RESULT_METAINFO_ID_FK dropped
2018-08-11 03:01:33,378 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Foreign key CCH_RESULT_METAINFO_ID_FK dropped
2018-08-11 03:01:33,382 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Foreign key CCRS_RESULT_METAINFO_ID_FK dropped
2018-08-11 03:01:33,386 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Foreign key JSRS_JOB_STORE_FK dropped
2018-08-11 03:01:33,390 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Table CALL_CACHING_JOB_DETRITUS renamed to CALL_CACHING_DETRITUS_ENTRY
2018-08-11 03:01:33,394 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Table CALL_CACHING_RESULT_METAINFO renamed to CALL_CACHING_ENTRY
2018-08-11 03:01:33,398 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Table CALL_CACHING_HASH renamed to CALL_CACHING_HASH_ENTRY
2018-08-11 03:01:33,404 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Table CALL_CACHING_RESULT_SIMPLETON renamed to CALL_CACHING_SIMPLETON_ENTRY
2018-08-11 03:01:33,408 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Table BACKEND_KV_STORE renamed to JOB_KEY_VALUE_ENTRY
2018-08-11 03:01:33,411 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Table JOB_STORE renamed to JOB_STORE_ENTRY
2018-08-11 03:01:33,413 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Table JOB_STORE_RESULT_SIMPLETON renamed to JOB_STORE_SIMPLETON_ENTRY
2018-08-11 03:01:33,416 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Table METADATA_JOURNAL renamed to METADATA_ENTRY
2018-08-11 03:01:33,422 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Table SUMMARY_STATUS renamed to SUMMARY_STATUS_ENTRY
2018-08-11 03:01:33,425 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Table WORKFLOW_METADATA_SUMMARY renamed to WORKFLOW_METADATA_SUMMARY_ENTRY
2018-08-11 03:01:33,427 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Table WORKFLOW_STORE renamed to WORKFLOW_STORE_ENTRY
2018-08-11 03:01:33,446 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Column CALL_CACHING_DETRITUS_ENTRY.CALL_CACHING_JOB_DETRITUS_ID renamed to CALL_CACHING_DETRITUS_ENTRY_ID
2018-08-11 03:01:33,458 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Column CALL_CACHING_DETRITUS_ENTRY.JOB_DETRITUS_KEY renamed to DETRITUS_KEY
2018-08-11 03:01:33,470 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Column CALL_CACHING_DETRITUS_ENTRY.JOB_DETRITUS_VALUE renamed to DETRITUS_VALUE
2018-08-11 03:01:33,482 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Column CALL_CACHING_DETRITUS_ENTRY.RESULT_METAINFO_ID renamed to CALL_CACHING_ENTRY_ID
2018-08-11 03:01:33,496 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Column CALL_CACHING_ENTRY.CALL_CACHING_RESULT_METAINFO_ID renamed to CALL_CACHING_ENTRY_ID
2018-08-11 03:01:33,508 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Column CALL_CACHING_ENTRY.JOB_SCATTER_INDEX renamed to JOB_INDEX
2018-08-11 03:01:33,519 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Column CALL_CACHING_ENTRY.CALL_FQN renamed to CALL_FULLY_QUALIFIED_NAME
2018-08-11 03:01:33,533 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Column CALL_CACHING_HASH_ENTRY.RESULT_METAINFO_ID renamed to CALL_CACHING_ENTRY_ID
2018-08-11 03:01:33,555 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Column CALL_CACHING_HASH_ENTRY.CALL_CACHING_HASH_ID renamed to CALL_CACHING_HASH_ENTRY_ID
2018-08-11 03:01:33,569 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Column CALL_CACHING_SIMPLETON_ENTRY.RESULT_METAINFO_ID renamed to CALL_CACHING_ENTRY_ID
2018-08-11 03:01:33,587 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Column CALL_CACHING_SIMPLETON_ENTRY.CALL_CACHING_RESULT_SIMPLETON_ID renamed to CALL_CACHING_SIMPLETON_ENTRY_ID
2018-08-11 03:01:33,600 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Column JOB_KEY_VALUE_ENTRY.JOB_RETRY_ATTEMPT renamed to JOB_ATTEMPT
2018-08-11 03:01:33,612 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Column JOB_KEY_VALUE_ENTRY.JOB_SCATTER_INDEX renamed to JOB_INDEX
2018-08-11 03:01:33,628 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Column JOB_KEY_VALUE_ENTRY.BACKEND_KV_STORE_ID renamed to JOB_KEY_VALUE_ENTRY_ID
2018-08-11 03:01:33,639 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Column JOB_KEY_VALUE_ENTRY.CALL_FQN renamed to CALL_FULLY_QUALIFIED_NAME
2018-08-11 03:01:33,649 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Column JOB_STORE_ENTRY.JOB_RETRY_ATTEMPT renamed to JOB_ATTEMPT
2018-08-11 03:01:33,660 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Column JOB_STORE_ENTRY.JOB_SCATTER_INDEX renamed to JOB_INDEX
2018-08-11 03:01:33,675 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Column JOB_STORE_ENTRY.JOB_STORE_ID renamed to JOB_STORE_ENTRY_ID
2018-08-11 03:01:33,685 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Column JOB_STORE_ENTRY.CALL_FQN renamed to CALL_FULLY_QUALIFIED_NAME
2018-08-11 03:01:33,697 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Column JOB_STORE_SIMPLETON_ENTRY.JOB_STORE_ID renamed to JOB_STORE_ENTRY_ID
2018-08-11 03:01:33,713 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Column JOB_STORE_SIMPLETON_ENTRY.JOB_STORE_RESULT_SIMPLETON_ID renamed to JOB_STORE_SIMPLETON_ENTRY_ID
2018-08-11 03:01:33,728 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Column SUMMARY_STATUS_ENTRY.SUMMARY_STATUS_ID renamed to SUMMARY_STATUS_ENTRY_ID
2018-08-11 03:01:33,748 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Column WORKFLOW_METADATA_SUMMARY_ENTRY.END_DT renamed to END_TIMESTAMP
2018-08-11 03:01:33,764 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Column WORKFLOW_METADATA_SUMMARY_ENTRY.START_DT renamed to START_TIMESTAMP
2018-08-11 03:01:33,788 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Column WORKFLOW_METADATA_SUMMARY_ENTRY.WORKFLOW_METADATA_SUMMARY_ID renamed to WORKFLOW_METADATA_SUMMARY_ENTRY_ID
2018-08-11 03:01:33,809 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Column WORKFLOW_STORE_ENTRY.WORKFLOW_STORE_ID renamed to WORKFLOW_STORE_ENTRY_ID
2018-08-11 03:01:33,825 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Primary key dropped from CALL_CACHING_DETRITUS_ENTRY
2018-08-11 03:01:33,839 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Primary key dropped from CALL_CACHING_ENTRY
2018-08-11 03:01:33,856 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Primary key dropped from CALL_CACHING_HASH_ENTRY
2018-08-11 03:01:33,872 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Primary key dropped from CALL_CACHING_SIMPLETON_ENTRY
2018-08-11 03:01:33,888 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Primary key dropped from JOB_KEY_VALUE_ENTRY
2018-08-11 03:01:33,903 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Primary key dropped from JOB_STORE_ENTRY
2018-08-11 03:01:33,919 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Primary key dropped from JOB_STORE_SIMPLETON_ENTRY
2018-08-11 03:01:33,934 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Primary key dropped from SUMMARY_STATUS_ENTRY
2018-08-11 03:01:33,949 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Primary key dropped from WORKFLOW_METADATA_SUMMARY_ENTRY
2018-08-11 03:01:33,971 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Primary key dropped from WORKFLOW_STORE_ENTRY
2018-08-11 03:01:33,990 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Primary key added to CALL_CACHING_DETRITUS_ENTRY (CALL_CACHING_DETRITUS_ENTRY_ID)
2018-08-11 03:01:34,007 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Primary key added to CALL_CACHING_ENTRY (CALL_CACHING_ENTRY_ID)
2018-08-11 03:01:34,026 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Primary key added to CALL_CACHING_HASH_ENTRY (CALL_CACHING_HASH_ENTRY_ID)
2018-08-11 03:01:34,040 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Primary key added to CALL_CACHING_SIMPLETON_ENTRY (CALL_CACHING_SIMPLETON_ENTRY_ID)
2018-08-11 03:01:34,058 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Primary key added to JOB_KEY_VALUE_ENTRY (JOB_KEY_VALUE_ENTRY_ID)
2018-08-11 03:01:34,071 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Primary key added to JOB_STORE_ENTRY (JOB_STORE_ENTRY_ID)
2018-08-11 03:01:34,087 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Primary key added to JOB_STORE_SIMPLETON_ENTRY (JOB_STORE_SIMPLETON_ENTRY_ID)
2018-08-11 03:01:34,103 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Primary key added to SUMMARY_STATUS_ENTRY (SUMMARY_STATUS_ENTRY_ID)
2018-08-11 03:01:34,118 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Primary key added to WORKFLOW_METADATA_SUMMARY_ENTRY (WORKFLOW_METADATA_SUMMARY_ENTRY_ID)
2018-08-11 03:01:34,130 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Primary key added to WORKFLOW_STORE_ENTRY (WORKFLOW_STORE_ENTRY_ID)
2018-08-11 03:01:34,155 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Auto-increment added to CALL_CACHING_DETRITUS_ENTRY.CALL_CACHING_DETRITUS_ENTRY_ID
2018-08-11 03:01:34,178 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Auto-increment added to CALL_CACHING_ENTRY.CALL_CACHING_ENTRY_ID
2018-08-11 03:01:34,203 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Auto-increment added to CALL_CACHING_HASH_ENTRY.CALL_CACHING_HASH_ENTRY_ID
2018-08-11 03:01:34,233 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Auto-increment added to CALL_CACHING_SIMPLETON_ENTRY.CALL_CACHING_SIMPLETON_ENTRY_ID
2018-08-11 03:01:34,257 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Auto-increment added to JOB_KEY_VALUE_ENTRY.JOB_KEY_VALUE_ENTRY_ID
2018-08-11 03:01:34,276 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Auto-increment added to JOB_STORE_ENTRY.JOB_STORE_ENTRY_ID
2018-08-11 03:01:34,299 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Auto-increment added to JOB_STORE_SIMPLETON_ENTRY.JOB_STORE_SIMPLETON_ENTRY_ID
2018-08-11 03:01:34,316 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Auto-increment added to SUMMARY_STATUS_ENTRY.SUMMARY_STATUS_ENTRY_ID
2018-08-11 03:01:34,333 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Auto-increment added to WORKFLOW_METADATA_SUMMARY_ENTRY.WORKFLOW_METADATA_SUMMARY_ENTRY_ID
2018-08-11 03:01:34,349 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Auto-increment added to WORKFLOW_STORE_ENTRY.WORKFLOW_STORE_ENTRY_ID
2018-08-11 03:01:34,369 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Foreign key constraint added to CALL_CACHING_DETRITUS_ENTRY (CALL_CACHING_ENTRY_ID)
2018-08-11 03:01:34,392 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Foreign key constraint added to CALL_CACHING_HASH_ENTRY (CALL_CACHING_ENTRY_ID)
2018-08-11 03:01:34,426 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Foreign key constraint added to CALL_CACHING_SIMPLETON_ENTRY (CALL_CACHING_ENTRY_ID)
2018-08-11 03:01:34,454 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Foreign key constraint added to JOB_STORE_SIMPLETON_ENTRY (JOB_STORE_ENTRY_ID)
2018-08-11 03:01:34,470 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Unique constraint added to CALL_CACHING_DETRITUS_ENTRY(CALL_CACHING_ENTRY_ID, DETRITUS_KEY)
2018-08-11 03:01:34,481 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Unique constraint added to CALL_CACHING_ENTRY(WORKFLOW_EXECUTION_UUID, CALL_FULLY_QUALIFIED_NAME, JOB_INDEX)
2018-08-11 03:01:34,493 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Unique constraint added to CALL_CACHING_HASH_ENTRY(CALL_CACHING_ENTRY_ID, HASH_KEY)
2018-08-11 03:01:34,507 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Unique constraint added to CALL_CACHING_SIMPLETON_ENTRY(CALL_CACHING_ENTRY_ID, SIMPLETON_KEY)
2018-08-11 03:01:34,519 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Unique constraint added to JOB_KEY_VALUE_ENTRY(WORKFLOW_EXECUTION_UUID, CALL_FULLY_QUALIFIED_NAME, JOB_INDEX, JOB_ATTEMPT, STORE_KEY)
2018-08-11 03:01:34,541 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Unique constraint added to JOB_STORE_ENTRY(WORKFLOW_EXECUTION_UUID, CALL_FULLY_QUALIFIED_NAME, JOB_INDEX, JOB_ATTEMPT)
2018-08-11 03:01:34,551 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Unique constraint added to JOB_STORE_SIMPLETON_ENTRY(JOB_STORE_ENTRY_ID, SIMPLETON_KEY)
2018-08-11 03:01:34,563 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Unique constraint added to SUMMARY_STATUS_ENTRY(SUMMARY_TABLE_NAME, SUMMARIZED_TABLE_NAME)
2018-08-11 03:01:34,572 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Unique constraint added to WORKFLOW_METADATA_SUMMARY_ENTRY(WORKFLOW_EXECUTION_UUID)
2018-08-11 03:01:34,581 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Unique constraint added to WORKFLOW_STORE_ENTRY(WORKFLOW_EXECUTION_UUID)
2018-08-11 03:01:34,589 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Index IX_JOB_STORE_ENTRY_WEU created
2018-08-11 03:01:34,597 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Index IX_WORKFLOW_METADATA_SUMMARY_ENTRY_WN created
2018-08-11 03:01:34,606 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Index IX_WORKFLOW_METADATA_SUMMARY_ENTRY_WS created
2018-08-11 03:01:34,614 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Index IX_WORKFLOW_STORE_ENTRY_WS created
2018-08-11 03:01:34,615 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Data updated in SUMMARY_STATUS_ENTRY
2018-08-11 03:01:34,616 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: Data updated in SUMMARY_STATUS_ENTRY
2018-08-11 03:01:34,617 INFO - changelog.xml: changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir: ChangeSet changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir ran successfully in 1372ms
2018-08-11 03:01:34,869 INFO - Running migration RenameWorkflowOptionsInMetadata with a read batch size of 100000 and a write batch size of 100000
2018-08-11 03:01:34,875 INFO - [RenameWorkflowOptionsInMetadata] 100%
2018-08-11 03:01:34,876 INFO - changelog.xml: changesets/rename_workflow_options_in_metadata.xml::rename_workflow_options_in_metadata::tjeandet: RenameWorkflowOptionsInMetadata complete.
2018-08-11 03:01:34,879 INFO - changelog.xml: changesets/rename_workflow_options_in_metadata.xml::rename_workflow_options_in_metadata::tjeandet: ChangeSet changesets/rename_workflow_options_in_metadata.xml::rename_workflow_options_in_metadata::tjeandet ran successfully in 12ms
2018-08-11 03:01:34,882 INFO - Running migration EncryptWorkflowStoreEntryWorkflowOptions with a read batch size of 100000 and a write batch size of 100000
2018-08-11 03:01:34,920 INFO - [EncryptWorkflowStoreEntryWorkflowOptions] 100%
2018-08-11 03:01:34,935 INFO - changelog.xml: changesets/encrypt_and_clear_workflow_options.xml::encrypt_workflow_store_entry_workflow_options::kshakir: EncryptWorkflowStoreEntryWorkflowOptions complete.
2018-08-11 03:01:34,937 INFO - changelog.xml: changesets/encrypt_and_clear_workflow_options.xml::encrypt_workflow_store_entry_workflow_options::kshakir: ChangeSet changesets/encrypt_and_clear_workflow_options.xml::encrypt_workflow_store_entry_workflow_options::kshakir ran successfully in 56ms
2018-08-11 03:01:34,955 INFO - Running migration ClearMetadataEntryWorkflowOptions with a read batch size of 100000 and a write batch size of 100000
2018-08-11 03:01:34,965 INFO - [ClearMetadataEntryWorkflowOptions] 100%
2018-08-11 03:01:34,967 INFO - changelog.xml: changesets/encrypt_and_clear_workflow_options.xml::clear_metadata_entry_workflow_options::kshakir: ClearMetadataEntryWorkflowOptions complete.
2018-08-11 03:01:34,969 INFO - changelog.xml: changesets/encrypt_and_clear_workflow_options.xml::clear_metadata_entry_workflow_options::kshakir: ChangeSet changesets/encrypt_and_clear_workflow_options.xml::clear_metadata_entry_workflow_options::kshakir ran successfully in 19ms
2018-08-11 03:01:35,014 INFO - changelog.xml: changesets/sub_workflow_store.xml::SUB_WORKFLOW_STORE_ENTRY::tjeandet: Table SUB_WORKFLOW_STORE_ENTRY created
2018-08-11 03:01:35,017 INFO - changelog.xml: changesets/sub_workflow_store.xml::SUB_WORKFLOW_STORE_ENTRY::tjeandet: ChangeSet changesets/sub_workflow_store.xml::SUB_WORKFLOW_STORE_ENTRY::tjeandet ran successfully in 32ms
2018-08-11 03:01:35,036 INFO - changelog.xml: changesets/sub_workflow_store.xml::sub_workflow_store_uuid_index::tjeandet: Index IX_SUB_WORKFLOW_STORE_ENTRY_PWEU created
2018-08-11 03:01:35,037 INFO - changelog.xml: changesets/sub_workflow_store.xml::sub_workflow_store_uuid_index::tjeandet: ChangeSet changesets/sub_workflow_store.xml::sub_workflow_store_uuid_index::tjeandet ran successfully in 12ms
2018-08-11 03:01:35,137 INFO - changelog.xml: changesets/sub_workflow_store.xml::sub_workflow_store_jobkey_index::tjeandet: Unique constraint added to SUB_WORKFLOW_STORE_ENTRY(PARENT_WORKFLOW_EXECUTION_UUID, CALL_FULLY_QUALIFIED_NAME, CALL_INDEX, CALL_ATTEMPT)
2018-08-11 03:01:35,138 INFO - changelog.xml: changesets/sub_workflow_store.xml::sub_workflow_store_jobkey_index::tjeandet: ChangeSet changesets/sub_workflow_store.xml::sub_workflow_store_jobkey_index::tjeandet ran successfully in 12ms
2018-08-11 03:01:35,169 INFO - changelog.xml: changesets/sub_workflow_store.xml::sub_workflow_store_root_workflow_fk::tjeandet: Foreign key constraint added to SUB_WORKFLOW_STORE_ENTRY (ROOT_WORKFLOW_ID)
2018-08-11 03:01:35,169 INFO - changelog.xml: changesets/sub_workflow_store.xml::sub_workflow_store_root_workflow_fk::tjeandet: ChangeSet changesets/sub_workflow_store.xml::sub_workflow_store_root_workflow_fk::tjeandet ran successfully in 29ms
2018-08-11 03:01:35,191 INFO - changelog.xml: changesets/workflow_store_imports_file.xml::workflow-store-imports-file::cjllanwarne: Columns IMPORTS_ZIP(LONGBLOB) added to WORKFLOW_STORE_ENTRY
2018-08-11 03:01:35,191 INFO - changelog.xml: changesets/workflow_store_imports_file.xml::workflow-store-imports-file::cjllanwarne: ChangeSet changesets/workflow_store_imports_file.xml::workflow-store-imports-file::cjllanwarne ran successfully in 20ms
2018-08-11 03:01:35,215 INFO - changelog.xml: changesets/workflow_store_labels_file.xml::workflow-store-labels-file::cjllanwarne: Columns CUSTOM_LABELS(LONGTEXT) added to WORKFLOW_STORE_ENTRY
2018-08-11 03:01:35,215 INFO - changelog.xml: changesets/workflow_store_labels_file.xml::workflow-store-labels-file::cjllanwarne: ChangeSet changesets/workflow_store_labels_file.xml::workflow-store-labels-file::cjllanwarne ran successfully in 21ms
2018-08-11 03:01:35,265 INFO - changelog.xml: changesets/embiggen_detritus_value.xml::embiggen_call_caching_detritus_entry::rmunshi: CALL_CACHING_DETRITUS_ENTRY.DETRITUS_VALUE datatype was changed to LONGTEXT
2018-08-11 03:01:35,266 INFO - changelog.xml: changesets/embiggen_detritus_value.xml::embiggen_call_caching_detritus_entry::rmunshi: ChangeSet changesets/embiggen_detritus_value.xml::embiggen_call_caching_detritus_entry::rmunshi ran successfully in 44ms
2018-08-11 03:01:35,291 INFO - changelog.xml: changesets/standardize_column_names_patches.xml::standardize_column_names_patches::kshakir: Foreign key FK_CALL_CACHING_HASH_ENTRY_CALL_CACHING_ENTRY_ID dropped
2018-08-11 03:01:35,297 INFO - changelog.xml: changesets/standardize_column_names_patches.xml::standardize_column_names_patches::kshakir: Foreign key FK_JOB_STORE_RESULT_SIMPLETON_JOB_STORE_ENTRY_ID dropped
2018-08-11 03:01:35,303 INFO - changelog.xml: changesets/standardize_column_names_patches.xml::standardize_column_names_patches::kshakir: Foreign key FK_SUB_WORKFLOW_STORE_ROOT_WORKFLOW_ID_WORKFLOW_STORE_ENTRY_ID dropped
2018-08-11 03:01:35,308 INFO - changelog.xml: changesets/standardize_column_names_patches.xml::standardize_column_names_patches::kshakir: Unique constraint UC_CALL_CACHING_ENTRY_WEU_CQFN_JI dropped from CALL_CACHING_ENTRY
2018-08-11 03:01:35,314 INFO - changelog.xml: changesets/standardize_column_names_patches.xml::standardize_column_names_patches::kshakir: Unique constraint UC_CALL_CACHING_HASH_ENTRY_CCEI dropped from CALL_CACHING_HASH_ENTRY
2018-08-11 03:01:35,321 INFO - changelog.xml: changesets/standardize_column_names_patches.xml::standardize_column_names_patches::kshakir: Unique constraint added to CALL_CACHING_ENTRY(WORKFLOW_EXECUTION_UUID, CALL_FULLY_QUALIFIED_NAME, JOB_INDEX)
2018-08-11 03:01:35,327 INFO - changelog.xml: changesets/standardize_column_names_patches.xml::standardize_column_names_patches::kshakir: Unique constraint added to CALL_CACHING_HASH_ENTRY(CALL_CACHING_ENTRY_ID, HASH_KEY)
2018-08-11 03:01:35,351 INFO - changelog.xml: changesets/standardize_column_names_patches.xml::standardize_column_names_patches::kshakir: Foreign key constraint added to CALL_CACHING_HASH_ENTRY (CALL_CACHING_ENTRY_ID)
2018-08-11 03:01:35,373 INFO - changelog.xml: changesets/standardize_column_names_patches.xml::standardize_column_names_patches::kshakir: Foreign key constraint added to JOB_STORE_SIMPLETON_ENTRY (JOB_STORE_ENTRY_ID)
2018-08-11 03:01:35,403 INFO - changelog.xml: changesets/standardize_column_names_patches.xml::standardize_column_names_patches::kshakir: Foreign key constraint added to SUB_WORKFLOW_STORE_ENTRY (ROOT_WORKFLOW_ID)
2018-08-11 03:01:35,403 INFO - changelog.xml: changesets/standardize_column_names_patches.xml::standardize_column_names_patches::kshakir: ChangeSet changesets/standardize_column_names_patches.xml::standardize_column_names_patches::kshakir ran successfully in 125ms
2018-08-11 03:01:35,430 INFO - changelog.xml: changesets/nullable_lobs.xml::nullable_lobs::kshakir: Null constraint dropped from CALL_CACHING_DETRITUS_ENTRY.DETRITUS_VALUE
2018-08-11 03:01:35,447 INFO - changelog.xml: changesets/nullable_lobs.xml::nullable_lobs::kshakir: Null constraint dropped from CALL_CACHING_SIMPLETON_ENTRY.SIMPLETON_VALUE
2018-08-11 03:01:35,456 INFO - changelog.xml: changesets/nullable_lobs.xml::nullable_lobs::kshakir: Null constraint dropped from JOB_STORE_SIMPLETON_ENTRY.SIMPLETON_VALUE
2018-08-11 03:01:35,474 INFO - changelog.xml: changesets/nullable_lobs.xml::nullable_lobs::kshakir: Null constraint dropped from WORKFLOW_STORE_ENTRY.WORKFLOW_DEFINITION
2018-08-11 03:01:35,493 INFO - changelog.xml: changesets/nullable_lobs.xml::nullable_lobs::kshakir: Null constraint dropped from WORKFLOW_STORE_ENTRY.WORKFLOW_INPUTS
2018-08-11 03:01:35,514 INFO - changelog.xml: changesets/nullable_lobs.xml::nullable_lobs::kshakir: Null constraint dropped from WORKFLOW_STORE_ENTRY.WORKFLOW_OPTIONS
2018-08-11 03:01:35,535 INFO - changelog.xml: changesets/nullable_lobs.xml::nullable_lobs::kshakir: Null constraint dropped from WORKFLOW_STORE_ENTRY.CUSTOM_LABELS
2018-08-11 03:01:35,537 INFO - changelog.xml: changesets/nullable_lobs.xml::nullable_lobs::kshakir: ChangeSet changesets/nullable_lobs.xml::nullable_lobs::kshakir ran successfully in 119ms
2018-08-11 03:01:35,584 INFO - changelog.xml: changesets/add_attempt_in_call_caching_entry.xml::add_attempt_in_call_caching_entry::tjeandet: Columns JOB_ATTEMPT(INT) added to CALL_CACHING_ENTRY
2018-08-11 03:01:35,584 INFO - changelog.xml: changesets/add_attempt_in_call_caching_entry.xml::add_attempt_in_call_caching_entry::tjeandet: ChangeSet changesets/add_attempt_in_call_caching_entry.xml::add_attempt_in_call_caching_entry::tjeandet ran successfully in 21ms
2018-08-11 03:01:35,588 INFO - changelog.xml: changesets/replace_empty_custom_labels.xml::replace_empty_custom_labels::rmunshi: SQL in file migration/workflow_store/replace_empty_custom_labels.sql executed
2018-08-11 03:01:35,588 INFO - changelog.xml: changesets/replace_empty_custom_labels.xml::replace_empty_custom_labels::rmunshi: ChangeSet changesets/replace_empty_custom_labels.xml::replace_empty_custom_labels::rmunshi ran successfully in 2ms
2018-08-11 03:01:35,630 INFO - changelog.xml: changesets/replace_empty_custom_labels.xml::custom_labels_not_null::rmunshi: Null constraint has been added to WORKFLOW_STORE_ENTRY.CUSTOM_LABELS
2018-08-11 03:01:35,631 INFO - changelog.xml: changesets/replace_empty_custom_labels.xml::custom_labels_not_null::rmunshi: ChangeSet changesets/replace_empty_custom_labels.xml::custom_labels_not_null::rmunshi ran successfully in 40ms
2018-08-11 03:01:35,653 INFO - changelog.xml: changesets/failure_metadata.xml::failure_to_message::cjllanwarne: SQL in file failure_metadata_scripts/failure_to_message.sql executed
2018-08-11 03:01:35,657 INFO - changelog.xml: changesets/failure_metadata.xml::failure_to_message::cjllanwarne: ChangeSet changesets/failure_metadata.xml::failure_to_message::cjllanwarne ran successfully in 10ms
2018-08-11 03:01:35,683 INFO - changelog.xml: changesets/failure_metadata.xml::remove_failure_timestamp::cjllanwarne: Data deleted from METADATA_ENTRY
2018-08-11 03:01:35,685 INFO - changelog.xml: changesets/failure_metadata.xml::remove_failure_timestamp::cjllanwarne: ChangeSet changesets/failure_metadata.xml::remove_failure_timestamp::cjllanwarne ran successfully in 4ms
2018-08-11 03:01:35,718 INFO - changelog.xml: changesets/failure_metadata.xml::causedByLists::cjllanwarne: SQL in file failure_metadata_scripts/causedBy_lists.sql executed
2018-08-11 03:01:35,719 INFO - changelog.xml: changesets/failure_metadata.xml::causedByLists::cjllanwarne: ChangeSet changesets/failure_metadata.xml::causedByLists::cjllanwarne ran successfully in 23ms
2018-08-11 03:01:35,759 INFO - Running migration DeduplicateFailureMessageIds with a read batch size of 100000 and a write batch size of 100000
2018-08-11 03:01:35,789 INFO - [DeduplicateFailureMessageIds] 100%
2018-08-11 03:01:35,791 INFO - changelog.xml: changesets/failure_metadata.xml::deduplicate_failure_messages::cjllanwarne: DeduplicateFailureMessageIds complete.
2018-08-11 03:01:35,795 INFO - changelog.xml: changesets/failure_metadata.xml::deduplicate_failure_messages::cjllanwarne: ChangeSet changesets/failure_metadata.xml::deduplicate_failure_messages::cjllanwarne ran successfully in 39ms
2018-08-11 03:01:35,834 INFO - changelog.xml: changesets/failure_metadata.xml::guaranteed_caused_bys::cjllanwarne: SQL in file failure_metadata_scripts/guarantee_causedBy.sql executed
2018-08-11 03:01:35,838 INFO - changelog.xml: changesets/failure_metadata.xml::guaranteed_caused_bys::cjllanwarne: ChangeSet changesets/failure_metadata.xml::guaranteed_caused_bys::cjllanwarne ran successfully in 27ms
2018-08-11 03:01:35,862 INFO - Running migration ExpandSingleFailureStrings with a read batch size of 100000 and a write batch size of 100000
2018-08-11 03:01:35,881 INFO - [ExpandSingleFailureStrings] 100%
2018-08-11 03:01:35,892 INFO - changelog.xml: changesets/failure_metadata_2.xml::expand_single_failure_strings::cjllanwarne: ExpandSingleFailureStrings complete.
2018-08-11 03:01:35,893 INFO - changelog.xml: changesets/failure_metadata_2.xml::expand_single_failure_strings::cjllanwarne: ChangeSet changesets/failure_metadata_2.xml::expand_single_failure_strings::cjllanwarne ran successfully in 33ms
2018-08-11 03:01:35,926 INFO - changelog.xml: changesets/call_caching_aggregated_hashes.xml::call_caching_aggregation_entry::tjeandet: Table CALL_CACHING_AGGREGATION_ENTRY created
2018-08-11 03:01:35,927 INFO - changelog.xml: changesets/call_caching_aggregated_hashes.xml::call_caching_aggregation_entry::tjeandet: ChangeSet changesets/call_caching_aggregated_hashes.xml::call_caching_aggregation_entry::tjeandet ran successfully in 26ms
2018-08-11 03:01:35,985 INFO - changelog.xml: changesets/call_caching_aggregated_hashes.xml::call_caching_aggregation_entry_keys_and_indexes::tjeandet: Foreign key constraint added to CALL_CACHING_AGGREGATION_ENTRY (CALL_CACHING_ENTRY_ID)
2018-08-11 03:01:35,994 INFO - changelog.xml: changesets/call_caching_aggregated_hashes.xml::call_caching_aggregation_entry_keys_and_indexes::tjeandet: Index IX_CALL_CACHING_AGGREGATION_ENTRY_BA_IFA created
2018-08-11 03:01:35,994 INFO - changelog.xml: changesets/call_caching_aggregated_hashes.xml::call_caching_aggregation_entry_keys_and_indexes::tjeandet: ChangeSet changesets/call_caching_aggregated_hashes.xml::call_caching_aggregation_entry_keys_and_indexes::tjeandet ran successfully in 60ms
2018-08-11 03:01:36,009 INFO - changelog.xml: changesets/call_caching_aggregated_hashes.xml::call_caching_aggregation_entry_populate_aggregation::tjeandet: SQL in file call_caching_aggregation/call_caching_base_aggregation.sql executed
2018-08-11 03:01:36,020 INFO - changelog.xml: changesets/call_caching_aggregated_hashes.xml::call_caching_aggregation_entry_populate_aggregation::tjeandet: SQL in file call_caching_aggregation/call_caching_input_files_aggregation.sql executed
2018-08-11 03:01:36,020 INFO - changelog.xml: changesets/call_caching_aggregated_hashes.xml::call_caching_aggregation_entry_populate_aggregation::tjeandet: ChangeSet changesets/call_caching_aggregated_hashes.xml::call_caching_aggregation_entry_populate_aggregation::tjeandet ran successfully in 21ms
2018-08-11 03:01:36,077 INFO - changelog.xml: changesets/custom_label_entry.xml::custom_LABEL_entry::rmunshi: Table CUSTOM_LABEL_ENTRY created
2018-08-11 03:01:36,078 INFO - changelog.xml: changesets/custom_label_entry.xml::custom_LABEL_entry::rmunshi: ChangeSet changesets/custom_label_entry.xml::custom_LABEL_entry::rmunshi ran successfully in 24ms
2018-08-11 03:01:36,106 INFO - changelog.xml: changesets/custom_label_entry.xml::WMSE_workflow_execution_uuid_foreign_key::rmunshi: Foreign key constraint added to CUSTOM_LABEL_ENTRY (WORKFLOW_EXECUTION_UUID)
2018-08-11 03:01:36,107 INFO - changelog.xml: changesets/custom_label_entry.xml::WMSE_workflow_execution_uuid_foreign_key::rmunshi: ChangeSet changesets/custom_label_entry.xml::WMSE_workflow_execution_uuid_foreign_key::rmunshi ran successfully in 27ms
2018-08-11 03:01:36,118 INFO - changelog.xml: changesets/custom_label_entry.xml::custom_label_entry_index::rmunshi: Unique constraint added to CUSTOM_LABEL_ENTRY(CUSTOM_LABEL_KEY, CUSTOM_LABEL_VALUE, WORKFLOW_EXECUTION_UUID)
2018-08-11 03:01:36,119 INFO - changelog.xml: changesets/custom_label_entry.xml::custom_label_entry_index::rmunshi: ChangeSet changesets/custom_label_entry.xml::custom_label_entry_index::rmunshi ran successfully in 10ms
2018-08-11 03:01:36,157 INFO - changelog.xml: changesets/custom_label_entry.xml::modify label key/value data types::rmunshi: CUSTOM_LABEL_ENTRY.CUSTOM_LABEL_KEY datatype was changed to VARCHAR(63)
2018-08-11 03:01:36,184 INFO - changelog.xml: changesets/custom_label_entry.xml::modify label key/value data types::rmunshi: CUSTOM_LABEL_ENTRY.CUSTOM_LABEL_VALUE datatype was changed to VARCHAR(63)
2018-08-11 03:01:36,185 INFO - changelog.xml: changesets/custom_label_entry.xml::modify label key/value data types::rmunshi: ChangeSet changesets/custom_label_entry.xml::modify label key/value data types::rmunshi ran successfully in 58ms
2018-08-11 03:01:36,206 INFO - changelog.xml: changesets/docker_hash_store.xml::DOCKER_HASH_STORE_ENTRY::tjeandet: Table DOCKER_HASH_STORE_ENTRY created
2018-08-11 03:01:36,214 INFO - changelog.xml: changesets/docker_hash_store.xml::DOCKER_HASH_STORE_ENTRY::tjeandet: ChangeSet changesets/docker_hash_store.xml::DOCKER_HASH_STORE_ENTRY::tjeandet ran successfully in 26ms
2018-08-11 03:01:36,263 INFO - changelog.xml: changesets/docker_hash_store.xml::docker_hash_store_uuid_unique_constraint::tjeandet: Unique constraint added to DOCKER_HASH_STORE_ENTRY(WORKFLOW_EXECUTION_UUID, DOCKER_TAG)
2018-08-11 03:01:36,263 INFO - changelog.xml: changesets/docker_hash_store.xml::docker_hash_store_uuid_unique_constraint::tjeandet: ChangeSet changesets/docker_hash_store.xml::docker_hash_store_uuid_unique_constraint::tjeandet ran successfully in 27ms
2018-08-11 03:01:36,310 INFO - changelog.xml: changesets/workflow_store_type_and_version.xml::workflow-store-type-and-version::mcovarr: Columns WORKFLOW_TYPE(VARCHAR(30)),WORKFLOW_TYPE_VERSION(VARCHAR(255)) added to WORKFLOW_STORE_ENTRY
2018-08-11 03:01:36,310 INFO - changelog.xml: changesets/workflow_store_type_and_version.xml::workflow-store-type-and-version::mcovarr: ChangeSet changesets/workflow_store_type_and_version.xml::workflow-store-type-and-version::mcovarr ran successfully in 29ms
2018-08-11 03:01:36,325 INFO - Running migration PreemptedIsABackendStatus with a read batch size of 100000 and a write batch size of 100000
2018-08-11 03:01:36,365 INFO - [PreemptedIsABackendStatus] 100%
2018-08-11 03:01:36,374 INFO - changelog.xml: changesets/preempted_is_a_backend_status.xml::preempted_is_a_backend_status::cjllanwarne: PreemptedIsABackendStatus complete.
2018-08-11 03:01:36,381 INFO - changelog.xml: changesets/preempted_is_a_backend_status.xml::preempted_is_a_backend_status::cjllanwarne: ChangeSet changesets/preempted_is_a_backend_status.xml::preempted_is_a_backend_status::cjllanwarne ran successfully in 63ms
2018-08-11 03:01:36,394 INFO - changelog.xml: changesets/remove_pre_pbe_tables.xml::drop-pre-pbe-tables::mcovarr: Table EXECUTION_INFO dropped
2018-08-11 03:01:36,399 INFO - changelog.xml: changesets/remove_pre_pbe_tables.xml::drop-pre-pbe-tables::mcovarr: Table EXECUTION_EVENT dropped
2018-08-11 03:01:36,403 INFO - changelog.xml: changesets/remove_pre_pbe_tables.xml::drop-pre-pbe-tables::mcovarr: Table FAILURE_EVENT dropped
2018-08-11 03:01:36,407 INFO - changelog.xml: changesets/remove_pre_pbe_tables.xml::drop-pre-pbe-tables::mcovarr: Table RUNTIME_ATTRIBUTES dropped
2018-08-11 03:01:36,411 INFO - changelog.xml: changesets/remove_pre_pbe_tables.xml::drop-pre-pbe-tables::mcovarr: Table SYMBOL dropped
2018-08-11 03:01:36,415 INFO - changelog.xml: changesets/remove_pre_pbe_tables.xml::drop-pre-pbe-tables::mcovarr: Table EXECUTION dropped
2018-08-11 03:01:36,418 INFO - changelog.xml: changesets/remove_pre_pbe_tables.xml::drop-pre-pbe-tables::mcovarr: Table WORKFLOW_EXECUTION_AUX dropped
2018-08-11 03:01:36,422 INFO - changelog.xml: changesets/remove_pre_pbe_tables.xml::drop-pre-pbe-tables::mcovarr: Table WORKFLOW_EXECUTION dropped
2018-08-11 03:01:36,423 INFO - changelog.xml: changesets/remove_pre_pbe_tables.xml::drop-pre-pbe-tables::mcovarr: ChangeSet changesets/remove_pre_pbe_tables.xml::drop-pre-pbe-tables::mcovarr ran successfully in 34ms
2018-08-11 03:01:36,431 INFO - changelog.xml: changesets/move_sql_metadata_changelog.xml::move_metadata_changelog::kshakir: Foreign key FK_CUSTOM_LABEL_ENTRY_WORKFLOW_EXECUTION_UUID dropped
2018-08-11 03:01:36,436 INFO - changelog.xml: changesets/move_sql_metadata_changelog.xml::move_metadata_changelog::kshakir: Unique constraint UC_CUSTOM_LABEL_ENTRY_CLK_CLV_WEU dropped from CUSTOM_LABEL_ENTRY
2018-08-11 03:01:36,443 INFO - changelog.xml: changesets/move_sql_metadata_changelog.xml::move_metadata_changelog::kshakir: Unique constraint UC_SUMMARY_STATUS_ENTRY_STN_STN dropped from SUMMARY_STATUS_ENTRY
2018-08-11 03:01:36,449 INFO - changelog.xml: changesets/move_sql_metadata_changelog.xml::move_metadata_changelog::kshakir: Unique constraint UC_WORKFLOW_METADATA_SUMMARY_ENTRY_WEU dropped from WORKFLOW_METADATA_SUMMARY_ENTRY
2018-08-11 03:01:36,453 INFO - changelog.xml: changesets/move_sql_metadata_changelog.xml::move_metadata_changelog::kshakir: Table CUSTOM_LABEL_ENTRY dropped
2018-08-11 03:01:36,458 INFO - changelog.xml: changesets/move_sql_metadata_changelog.xml::move_metadata_changelog::kshakir: Table METADATA_ENTRY dropped
2018-08-11 03:01:36,461 INFO - changelog.xml: changesets/move_sql_metadata_changelog.xml::move_metadata_changelog::kshakir: Table SUMMARY_STATUS_ENTRY dropped
2018-08-11 03:01:36,469 INFO - changelog.xml: changesets/move_sql_metadata_changelog.xml::move_metadata_changelog::kshakir: Table WORKFLOW_METADATA_SUMMARY_ENTRY dropped
2018-08-11 03:01:36,470 INFO - changelog.xml: changesets/move_sql_metadata_changelog.xml::move_metadata_changelog::kshakir: ChangeSet changesets/move_sql_metadata_changelog.xml::move_metadata_changelog::kshakir ran successfully in 45ms
2018-08-11 03:01:36,546 INFO - changelog.xml: changesets/workflow_store_state_widening.xml::workflow-store-state-widening::tjeandet: WORKFLOW_STORE_ENTRY.WORKFLOW_STATE datatype was changed to varchar(20)
2018-08-11 03:01:36,547 INFO - changelog.xml: changesets/workflow_store_state_widening.xml::workflow-store-state-widening::tjeandet: ChangeSet changesets/workflow_store_state_widening.xml::workflow-store-state-widening::tjeandet ran successfully in 40ms
2018-08-11 03:01:36,582 INFO - changelog.xml: changesets/workflow_store_restarted_column.xml::workflow-store-restarted-column::tjeandet: Columns RESTARTED(BOOLEAN) added to WORKFLOW_STORE_ENTRY
2018-08-11 03:01:36,582 INFO - changelog.xml: changesets/workflow_store_restarted_column.xml::workflow-store-restarted-column::tjeandet: ChangeSet changesets/workflow_store_restarted_column.xml::workflow-store-restarted-column::tjeandet ran successfully in 33ms
2018-08-11 03:01:36,585 INFO - changelog.xml: changesets/workflow_store_restarted_column.xml::update-restartable::tjeandet: Data updated in WORKFLOW_STORE_ENTRY
2018-08-11 03:01:36,585 INFO - changelog.xml: changesets/workflow_store_restarted_column.xml::update-restartable::tjeandet: Data updated in WORKFLOW_STORE_ENTRY
2018-08-11 03:01:36,585 INFO - changelog.xml: changesets/workflow_store_restarted_column.xml::update-restartable::tjeandet: ChangeSet changesets/workflow_store_restarted_column.xml::update-restartable::tjeandet ran successfully in 1ms
2018-08-11 03:01:36,628 INFO - changelog.xml: changesets/workflow_store_workflow_root_column.xml::workflow-store-workflow-root-column::tjeandet: Columns WORKFLOW_ROOT(VARCHAR(100)) added to WORKFLOW_STORE_ENTRY
2018-08-11 03:01:36,629 INFO - changelog.xml: changesets/workflow_store_workflow_root_column.xml::workflow-store-workflow-root-column::tjeandet: ChangeSet changesets/workflow_store_workflow_root_column.xml::workflow-store-workflow-root-column::tjeandet ran successfully in 24ms
2018-08-11 03:01:36,664 INFO - changelog.xml: changesets/workflow_store_horizontal_db.xml::workflow-store-horizontal-db::mcovarr: Column WORKFLOW_STORE_ENTRY.RESTARTED dropped
2018-08-11 03:01:36,692 INFO - changelog.xml: changesets/workflow_store_horizontal_db.xml::workflow-store-horizontal-db::mcovarr: Columns CROMWELL_ID(VARCHAR(100)) added to WORKFLOW_STORE_ENTRY
2018-08-11 03:01:36,712 INFO - changelog.xml: changesets/workflow_store_horizontal_db.xml::workflow-store-horizontal-db::mcovarr: Columns HEARTBEAT_TIMESTAMP(TIMESTAMP) added to WORKFLOW_STORE_ENTRY
2018-08-11 03:01:36,713 INFO - changelog.xml: changesets/workflow_store_horizontal_db.xml::workflow-store-horizontal-db::mcovarr: ChangeSet changesets/workflow_store_horizontal_db.xml::workflow-store-horizontal-db::mcovarr ran successfully in 72ms
2018-08-11 03:01:36,736 INFO - changelog.xml: changesets/add_workflow_url_in_workflow_store_entry.xml::add_workflow_url_in_workflow_store_entry::sshah: Columns WORKFLOW_URL(VARCHAR(255)) added to WORKFLOW_STORE_ENTRY
2018-08-11 03:01:36,737 INFO - changelog.xml: changesets/add_workflow_url_in_workflow_store_entry.xml::add_workflow_url_in_workflow_store_entry::sshah: ChangeSet changesets/add_workflow_url_in_workflow_store_entry.xml::add_workflow_url_in_workflow_store_entry::sshah ran successfully in 21ms
2018-08-11 03:01:36,739 INFO - Successfully released change log lock
2018-08-11 03:01:36,803 INFO - Running with database db.url = jdbc:mysql://localhost:3306/cromwell_test?useSSL=false&rewriteBatchedStatements=true
2018-08-11 03:01:37,237 INFO - Successfully acquired change log lock
2018-08-11 03:01:37,625 INFO - Creating database history table with name: cromwell_test.SQLMETADATADATABASECHANGELOG
2018-08-11 03:01:37,663 INFO - Reading from cromwell_test.SQLMETADATADATABASECHANGELOG
2018-08-11 03:01:37,903 INFO - sql_metadata_changelog.xml: metadata_changesets/move_sql_metadata_changelog.xml::move_metadata_changelog::kshakir: Table CUSTOM_LABEL_ENTRY created
2018-08-11 03:01:37,936 INFO - sql_metadata_changelog.xml: metadata_changesets/move_sql_metadata_changelog.xml::move_metadata_changelog::kshakir: Table METADATA_ENTRY created
2018-08-11 03:01:37,950 INFO - sql_metadata_changelog.xml: metadata_changesets/move_sql_metadata_changelog.xml::move_metadata_changelog::kshakir: Table SUMMARY_STATUS_ENTRY created
2018-08-11 03:01:37,971 INFO - sql_metadata_changelog.xml: metadata_changesets/move_sql_metadata_changelog.xml::move_metadata_changelog::kshakir: Table WORKFLOW_METADATA_SUMMARY_ENTRY created
2018-08-11 03:01:37,984 INFO - sql_metadata_changelog.xml: metadata_changesets/move_sql_metadata_changelog.xml::move_metadata_changelog::kshakir: Unique constraint added to CUSTOM_LABEL_ENTRY(CUSTOM_LABEL_KEY, CUSTOM_LABEL_VALUE, WORKFLOW_EXECUTION_UUID)
2018-08-11 03:01:37,998 INFO - sql_metadata_changelog.xml: metadata_changesets/move_sql_metadata_changelog.xml::move_metadata_changelog::kshakir: Unique constraint added to SUMMARY_STATUS_ENTRY(SUMMARY_TABLE_NAME, SUMMARIZED_TABLE_NAME)
Waiting for Cromwell...
2018-08-11 03:01:38,011 INFO - sql_metadata_changelog.xml: metadata_changesets/move_sql_metadata_changelog.xml::move_metadata_changelog::kshakir: Unique constraint added to WORKFLOW_METADATA_SUMMARY_ENTRY(WORKFLOW_EXECUTION_UUID)
2018-08-11 03:01:38,045 INFO - sql_metadata_changelog.xml: metadata_changesets/move_sql_metadata_changelog.xml::move_metadata_changelog::kshakir: Foreign key constraint added to CUSTOM_LABEL_ENTRY (WORKFLOW_EXECUTION_UUID)
2018-08-11 03:01:38,055 INFO - sql_metadata_changelog.xml: metadata_changesets/move_sql_metadata_changelog.xml::move_metadata_changelog::kshakir: Index IX_WORKFLOW_METADATA_SUMMARY_ENTRY_WN created
2018-08-11 03:01:38,066 INFO - sql_metadata_changelog.xml: metadata_changesets/move_sql_metadata_changelog.xml::move_metadata_changelog::kshakir: Index IX_WORKFLOW_METADATA_SUMMARY_ENTRY_WS created
2018-08-11 03:01:38,075 INFO - sql_metadata_changelog.xml: metadata_changesets/move_sql_metadata_changelog.xml::move_metadata_changelog::kshakir: Index METADATA_JOB_AND_KEY_IDX created
2018-08-11 03:01:38,084 INFO - sql_metadata_changelog.xml: metadata_changesets/move_sql_metadata_changelog.xml::move_metadata_changelog::kshakir: Index METADATA_JOB_IDX created
2018-08-11 03:01:38,096 INFO - sql_metadata_changelog.xml: metadata_changesets/move_sql_metadata_changelog.xml::move_metadata_changelog::kshakir: Index METADATA_WORKFLOW_IDX created
2018-08-11 03:01:38,106 INFO - sql_metadata_changelog.xml: metadata_changesets/move_sql_metadata_changelog.xml::move_metadata_changelog::kshakir: Index SYS_IDX_11226 created
2018-08-11 03:01:38,107 INFO - sql_metadata_changelog.xml: metadata_changesets/move_sql_metadata_changelog.xml::move_metadata_changelog::kshakir: ChangeSet metadata_changesets/move_sql_metadata_changelog.xml::move_metadata_changelog::kshakir ran successfully in 338ms
2018-08-11 03:01:38,185 INFO - sql_metadata_changelog.xml: changesets/change_max_size_label_entry.xml::change_max_size_for_key_and_value_in_label::sshah: CUSTOM_LABEL_ENTRY.CUSTOM_LABEL_KEY datatype was changed to VARCHAR(255)
2018-08-11 03:01:38,220 INFO - sql_metadata_changelog.xml: changesets/change_max_size_label_entry.xml::change_max_size_for_key_and_value_in_label::sshah: CUSTOM_LABEL_ENTRY.CUSTOM_LABEL_VALUE datatype was changed to VARCHAR(255)
2018-08-11 03:01:38,220 INFO - sql_metadata_changelog.xml: changesets/change_max_size_label_entry.xml::change_max_size_for_key_and_value_in_label::sshah: ChangeSet changesets/change_max_size_label_entry.xml::change_max_size_for_key_and_value_in_label::sshah ran successfully in 65ms
2018-08-11 03:01:38,233 INFO - sql_metadata_changelog.xml: metadata_changesets/delete_duplicate_custom_labels.xml::delete_duplicate_custom_labels::kshakir: Data deleted from CUSTOM_LABEL_ENTRY
2018-08-11 03:01:38,241 INFO - sql_metadata_changelog.xml: metadata_changesets/delete_duplicate_custom_labels.xml::delete_duplicate_custom_labels::kshakir: Unique constraint UC_CUSTOM_LABEL_ENTRY_CLK_CLV_WEU dropped from CUSTOM_LABEL_ENTRY
2018-08-11 03:01:38,251 INFO - sql_metadata_changelog.xml: metadata_changesets/delete_duplicate_custom_labels.xml::delete_duplicate_custom_labels::kshakir: Unique constraint added to CUSTOM_LABEL_ENTRY(CUSTOM_LABEL_KEY, WORKFLOW_EXECUTION_UUID)
2018-08-11 03:01:38,252 INFO - sql_metadata_changelog.xml: metadata_changesets/delete_duplicate_custom_labels.xml::delete_duplicate_custom_labels::kshakir: ChangeSet metadata_changesets/delete_duplicate_custom_labels.xml::delete_duplicate_custom_labels::kshakir ran successfully in 22ms
2018-08-11 03:01:38,282 INFO - sql_metadata_changelog.xml: metadata_changesets/add_submission_timestamp_metadata_summary.xml::add_submission_timestamp_in_metadata_entry::sshah: Columns SUBMISSION_TIMESTAMP(DATETIME(6)) added to WORKFLOW_METADATA_SUMMARY_ENTRY
2018-08-11 03:01:38,283 INFO - sql_metadata_changelog.xml: metadata_changesets/add_submission_timestamp_metadata_summary.xml::add_submission_timestamp_in_metadata_entry::sshah: ChangeSet metadata_changesets/add_submission_timestamp_metadata_summary.xml::add_submission_timestamp_in_metadata_entry::sshah ran successfully in 27ms
2018-08-11 03:01:38,285 INFO - Successfully released change log lock
2018-08-11 03:01:39,772 WARN - Unrecognized configuration key(s) for Jes: dockerhub.auth, dockerhub.key-name, filesystems.gcs.project
2018-08-11 03:01:40,374 WARN - Unrecognized configuration key(s) for Jes: filesystems.gcs.project
2018-08-11 03:01:40,388 WARN - Unrecognized configuration key(s) for Jes: filesystems.gcs.project
2018-08-11 03:01:40,403 WARN - Unrecognized configuration key(s) for Jes: dockerhub.auth, dockerhub.key-name, filesystems.gcs.project
2018-08-11 03:01:40,442 WARN - Unrecognized configuration key(s) for Jes: dockerhub.auth, dockerhub.key-name, filesystems.gcs.project
Waiting for Cromwell...
2018-08-11 03:01:43,064 INFO - Slf4jLogger started
2018-08-11 03:01:44,210 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - Workflow heartbeat configuration:
{
"cromwellId" : "cromid-4ed3d08",
"heartbeatInterval" : "2 minutes",
"ttl" : "10 minutes",
"writeBatchSize" : 10000,
"writeThreshold" : 10000
}
2018-08-11 03:01:44,601 cromwell-system-akka.dispatchers.service-dispatcher-12 INFO - Metadata summary refreshing every 2 seconds.
2018-08-11 03:01:44,735 cromwell-system-akka.actor.default-dispatcher-5 INFO - KvWriteActor configured to flush with batch size 200 and process rate 5 seconds.
2018-08-11 03:01:44,742 cromwell-system-akka.dispatchers.service-dispatcher-10 INFO - WriteMetadataActor configured to flush with batch size 200 and process rate 5 seconds.
2018-08-11 03:01:44,846 cromwell-system-akka.dispatchers.engine-dispatcher-9 INFO - JobStoreWriterActor configured to flush with batch size 1000 and process rate 1 second.
2018-08-11 03:01:44,919 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - CallCacheWriteActor configured to flush with batch size 100 and process rate 3 seconds.
Waiting for Cromwell...
2018-08-11 03:01:48,761 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - JobExecutionTokenDispenser - Distribution rate: 50 per 1 seconds.
2018-08-11 03:01:49,027 cromwell-system-akka.dispatchers.backend-dispatcher-42 INFO - JES batch polling interval is 33333 milliseconds
2018-08-11 03:01:49,038 cromwell-system-akka.dispatchers.backend-dispatcher-43 INFO - JES batch polling interval is 33333 milliseconds
2018-08-11 03:01:49,066 cromwell-system-akka.dispatchers.backend-dispatcher-40 INFO - JES batch polling interval is 33333 milliseconds
2018-08-11 03:01:49,072 cromwell-system-akka.dispatchers.backend-dispatcher-42 INFO - JES batch polling interval is 33333 milliseconds
2018-08-11 03:01:49,073 cromwell-system-akka.dispatchers.backend-dispatcher-42 INFO - JES batch polling interval is 33333 milliseconds
2018-08-11 03:01:49,073 cromwell-system-akka.dispatchers.backend-dispatcher-42 INFO - JES batch polling interval is 33333 milliseconds
2018-08-11 03:01:49,073 cromwell-system-akka.dispatchers.backend-dispatcher-42 INFO - JES batch polling interval is 33333 milliseconds
2018-08-11 03:01:49,074 cromwell-system-akka.dispatchers.backend-dispatcher-42 INFO - JES batch polling interval is 33333 milliseconds
2018-08-11 03:01:49,074 cromwell-system-akka.dispatchers.backend-dispatcher-42 INFO - JES batch polling interval is 33333 milliseconds
2018-08-11 03:01:49,084 cromwell-system-akka.dispatchers.backend-dispatcher-42 INFO - JES batch polling interval is 33333 milliseconds
2018-08-11 03:01:49,084 cromwell-system-akka.dispatchers.backend-dispatcher-42 INFO - JES batch polling interval is 33333 milliseconds
2018-08-11 03:01:49,085 cromwell-system-akka.dispatchers.backend-dispatcher-42 INFO - JES batch polling interval is 33333 milliseconds
2018-08-11 03:01:49,085 cromwell-system-akka.dispatchers.backend-dispatcher-42 INFO - JES batch polling interval is 33333 milliseconds
2018-08-11 03:01:49,085 cromwell-system-akka.dispatchers.backend-dispatcher-42 INFO - JES batch polling interval is 33333 milliseconds
2018-08-11 03:01:49,086 cromwell-system-akka.dispatchers.backend-dispatcher-42 INFO - JES batch polling interval is 33333 milliseconds
2018-08-11 03:01:49,142 cromwell-system-akka.dispatchers.backend-dispatcher-41 INFO - PAPIQueryManager Running with 3 workers
2018-08-11 03:01:49,144 cromwell-system-akka.dispatchers.backend-dispatcher-38 INFO - PAPIQueryManager Running with 3 workers
2018-08-11 03:01:49,145 cromwell-system-akka.dispatchers.backend-dispatcher-37 INFO - PAPIQueryManager Running with 3 workers
2018-08-11 03:01:49,145 cromwell-system-akka.dispatchers.backend-dispatcher-39 INFO - PAPIQueryManager Running with 3 workers
2018-08-11 03:01:49,145 cromwell-system-akka.dispatchers.backend-dispatcher-40 INFO - PAPIQueryManager Running with 3 workers
2018-08-11 03:01:50,587 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - Cromwell 35-24a8eb1-SNAP service started on 0.0.0.0:8008...
Cromwell is running
2018-08-11 03:01:54,604 INFO - Error reporter loaded: sentry to https://sentry.io
2018-08-11 03:01:54,613 INFO - Error reporter loaded: slf4j to error
2018-08-11 03:01:54,616 INFO - Error retry count: 2
Discovery completed in 1 minute, 29 seconds.
Run starting. Expected test count is: 214
2018-08-11 03:01:57,237 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - Unspecified type (Unspecified version) workflow 6de9f48d-48df-41b7-be56-a22257793872 submitted
2018-08-11 03:01:57,247 cromwell-system-akka.dispatchers.api-dispatcher-58 INFO - CWL (v1.0) workflow d3618ad6-432e-4dac-963e-541cb77de944 submitted
2018-08-11 03:01:57,696 cromwell-system-akka.dispatchers.api-dispatcher-58 INFO - WDL (1.0) workflow 7ca193a0-b723-485e-ade2-c2fa8d115f5d submitted
2018-08-11 03:01:57,929 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - 3 new workflows fetched
2018-08-11 03:01:57,929 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(d3618ad6-432e-4dac-963e-541cb77de944)
2018-08-11 03:01:57,956 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-d3618ad6-432e-4dac-963e-541cb77de944
2018-08-11 03:01:57,973 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(6de9f48d-48df-41b7-be56-a22257793872)
2018-08-11 03:01:57,991 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-6de9f48d-48df-41b7-be56-a22257793872
2018-08-11 03:01:57,991 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(7ca193a0-b723-485e-ade2-c2fa8d115f5d)
2018-08-11 03:01:57,991 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-7ca193a0-b723-485e-ade2-c2fa8d115f5d
2018-08-11 03:01:57,992 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - Retrieved 3 workflows from the WorkflowStoreActor
2018-08-11 03:01:58,020 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - WorkflowStoreHeartbeatWriteActor configured to flush with batch size 10000 and process rate 2 minutes.
2018-08-11 03:01:58,027 cromwell-system-akka.dispatchers.api-dispatcher-58 INFO - CWL (v1.0) workflow 12d310ee-65df-4ed3-9ac8-8ed5316f7722 submitted
2018-08-11 03:01:58,697 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - Unspecified type (Unspecified version) workflow 9ba48877-5476-478c-8343-e7cfecccf1b7 submitted
2018-08-11 03:01:58,787 cromwell-system-akka.dispatchers.engine-dispatcher-9 INFO - MaterializeWorkflowDescriptorActor [UUID(7ca193a0)]: Parsing workflow as WDL 1.0
2018-08-11 03:01:58,824 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(d3618ad6)]: Parsing workflow as CWL v1.0
2018-08-11 03:01:58,850 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(6de9f48d)]: Parsing workflow as WDL draft-2
2018-08-11 03:01:58,991 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - 2 new workflows fetched
2018-08-11 03:01:58,992 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowManagerActor Starting workflow UUID(12d310ee-65df-4ed3-9ac8-8ed5316f7722)
2018-08-11 03:01:58,992 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowManagerActor Successfully started WorkflowActor-12d310ee-65df-4ed3-9ac8-8ed5316f7722
2018-08-11 03:01:58,992 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowManagerActor Starting workflow UUID(9ba48877-5476-478c-8343-e7cfecccf1b7)
2018-08-11 03:01:58,992 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowManagerActor Successfully started WorkflowActor-9ba48877-5476-478c-8343-e7cfecccf1b7
2018-08-11 03:01:58,992 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - Retrieved 2 workflows from the WorkflowStoreActor
2018-08-11 03:01:59,000 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - MaterializeWorkflowDescriptorActor [UUID(9ba48877)]: Parsing workflow as WDL draft-2
2018-08-11 03:01:59,004 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - MaterializeWorkflowDescriptorActor [UUID(12d310ee)]: Parsing workflow as CWL v1.0
2018-08-11 03:01:59,043 INFO - Pre-Processing /tmp/d3618ad6-432e-4dac-963e-541cb77de944.temp.1434139329128154575/d3618ad6-432e-4dac-963e-541cb77de944.cwl
2018-08-11 03:01:59,043 INFO - Pre-Processing /tmp/12d310ee-65df-4ed3-9ac8-8ed5316f7722.temp.4363090322790382598/12d310ee-65df-4ed3-9ac8-8ed5316f7722.cwl
2018-08-11 03:01:59,512 cromwell-system-akka.dispatchers.api-dispatcher-58 INFO - WDL (1.0) workflow bfe074e7-60eb-4d8b-9212-d001d9f8cef6 submitted
2018-08-11 03:02:00,022 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - 1 new workflows fetched
2018-08-11 03:02:00,023 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor Starting workflow UUID(bfe074e7-60eb-4d8b-9212-d001d9f8cef6)
2018-08-11 03:02:00,023 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor Successfully started WorkflowActor-bfe074e7-60eb-4d8b-9212-d001d9f8cef6
2018-08-11 03:02:00,023 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - Retrieved 1 workflows from the WorkflowStoreActor
2018-08-11 03:02:00,032 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(bfe074e7)]: Parsing workflow as WDL 1.0
2018-08-11 03:02:00,594 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - Unspecified type (Unspecified version) workflow dbaaf524-3e51-42a4-a4a3-acabad947aae submitted
2018-08-11 03:02:01,053 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - 1 new workflows fetched
2018-08-11 03:02:01,053 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor Starting workflow UUID(dbaaf524-3e51-42a4-a4a3-acabad947aae)
2018-08-11 03:02:01,053 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor Successfully started WorkflowActor-dbaaf524-3e51-42a4-a4a3-acabad947aae
2018-08-11 03:02:01,053 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - Retrieved 1 workflows from the WorkflowStoreActor
2018-08-11 03:02:01,695 cromwell-system-akka.dispatchers.api-dispatcher-58 INFO - Unspecified type (Unspecified version) workflow 1fc6af14-ab85-453d-b6dc-297f3cf9cf65 submitted
2018-08-11 03:02:01,956 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(bfe074e7)]: Call-to-Backend assignments: draft3_read_file_limits.readMap -> Papi, draft3_read_file_limits.readInt -> Papi, draft3_read_file_limits.readFloat -> Papi, draft3_read_file_limits.readString -> Papi, draft3_read_file_limits.readObject -> Papi, draft3_read_file_limits.readLines -> Papi, draft3_read_file_limits.readTsv -> Papi, draft3_read_file_limits.readBoolean -> Papi, draft3_read_file_limits.readJson -> Papi, draft3_read_file_limits.readObjects -> Papi
2018-08-11 03:02:01,990 cromwell-system-akka.dispatchers.engine-dispatcher-9 INFO - MaterializeWorkflowDescriptorActor [UUID(7ca193a0)]: Call-to-Backend assignments:
2018-08-11 03:02:01,993 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - MaterializeWorkflowDescriptorActor [UUID(9ba48877)]: Call-to-Backend assignments: floating_tags.findAgain -> Papi, floating_tags.echoAgain -> Papi, floating_tags.echo -> Papi, floating_tags.find -> Papi
2018-08-11 03:02:02,083 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(6de9f48d)]: Call-to-Backend assignments: restart_while_failing.B1 -> Papi, restart_while_failing.A -> Papi, restart_while_failing.sleep_exit -> Papi, restart_while_failing.B -> Papi, restart_while_failing.B2 -> Papi
2018-08-11 03:02:02,088 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - 1 new workflows fetched
2018-08-11 03:02:02,090 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor Starting workflow UUID(1fc6af14-ab85-453d-b6dc-297f3cf9cf65)
2018-08-11 03:02:02,095 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor Successfully started WorkflowActor-1fc6af14-ab85-453d-b6dc-297f3cf9cf65
2018-08-11 03:02:02,095 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - Retrieved 1 workflows from the WorkflowStoreActor
SequentialTestCaseSpec:
2018-08-11 03:02:02,855 cromwell-system-akka.dispatchers.api-dispatcher-61 INFO - Unspecified type (Unspecified version) workflow 819450a6-f9d2-4e8b-a136-27fb84f46077 submitted
2018-08-11 03:02:03,140 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - 1 new workflows fetched
2018-08-11 03:02:03,140 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowManagerActor Starting workflow UUID(819450a6-f9d2-4e8b-a136-27fb84f46077)
2018-08-11 03:02:03,140 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowManagerActor Successfully started WorkflowActor-819450a6-f9d2-4e8b-a136-27fb84f46077
2018-08-11 03:02:03,140 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - Retrieved 1 workflows from the WorkflowStoreActor
2018-08-11 03:02:03,144 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(819450a6)]: Parsing workflow as WDL draft-2
2018-08-11 03:02:03,379 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(819450a6)]: Call-to-Backend assignments: length.lens -> Papi
2018-08-11 03:02:04,025 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - Unspecified type (Unspecified version) workflow 62091ef4-05a2-4b3d-83d6-c084fd798833 submitted
2018-08-11 03:02:04,162 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - 1 new workflows fetched
2018-08-11 03:02:04,162 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor Starting workflow UUID(62091ef4-05a2-4b3d-83d6-c084fd798833)
2018-08-11 03:02:04,162 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor Successfully started WorkflowActor-62091ef4-05a2-4b3d-83d6-c084fd798833
2018-08-11 03:02:04,162 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - Retrieved 1 workflows from the WorkflowStoreActor
2018-08-11 03:02:04,168 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(62091ef4)]: Parsing workflow as WDL draft-2
2018-08-11 03:02:04,449 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - MaterializeWorkflowDescriptorActor [UUID(dbaaf524)]: Parsing workflow as WDL Biscayne
2018-08-11 03:02:04,455 cromwell-system-akka.dispatchers.engine-dispatcher-9 INFO - MaterializeWorkflowDescriptorActor [UUID(1fc6af14)]: Parsing workflow as WDL Biscayne
2018-08-11 03:02:04,825 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(62091ef4)]: Call-to-Backend assignments: selection_functions.makeStringTrue -> Papi, selection_functions.makeStringFalse -> Papi
2018-08-11 03:02:05,111 cromwell-system-akka.dispatchers.api-dispatcher-61 INFO - Unspecified type (Unspecified version) workflow fdc9eff4-89c2-4454-8ac9-c29c0caa4598 submitted
2018-08-11 03:02:05,184 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - 1 new workflows fetched
2018-08-11 03:02:05,184 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Starting workflow UUID(fdc9eff4-89c2-4454-8ac9-c29c0caa4598)
2018-08-11 03:02:05,184 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Successfully started WorkflowActor-fdc9eff4-89c2-4454-8ac9-c29c0caa4598
2018-08-11 03:02:05,184 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - Retrieved 1 workflows from the WorkflowStoreActor
2018-08-11 03:02:05,189 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(fdc9eff4)]: Parsing workflow as WDL draft-2
2018-08-11 03:02:05,316 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - MaterializeWorkflowDescriptorActor [UUID(dbaaf524)]: Call-to-Backend assignments: foo_wf.add5 -> Papi
2018-08-11 03:02:05,355 cromwell-system-akka.dispatchers.engine-dispatcher-9 INFO - MaterializeWorkflowDescriptorActor [UUID(1fc6af14)]: Call-to-Backend assignments: foo_wf.add5 -> Papi
2018-08-11 03:02:05,540 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(fdc9eff4)]: Call-to-Backend assignments: space.goodbye -> Papi, space.hello -> Papi
2018-08-11 03:02:05,593 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowExecutionActor-819450a6-f9d2-4e8b-a136-27fb84f46077 [UUID(819450a6)]: Starting length.lens
2018-08-11 03:02:05,607 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowExecutionActor-bfe074e7-60eb-4d8b-9212-d001d9f8cef6 [UUID(bfe074e7)]: Starting draft3_read_file_limits.readMap, draft3_read_file_limits.readInt, draft3_read_file_limits.readFloat, draft3_read_file_limits.readString, draft3_read_file_limits.readObject, draft3_read_file_limits.readLines, draft3_read_file_limits.readTsv, draft3_read_file_limits.readBoolean, draft3_read_file_limits.readJson, draft3_read_file_limits.readObjects
2018-08-11 03:02:06,179 cromwell-system-akka.dispatchers.api-dispatcher-61 INFO - WDL (1.0) workflow ff0330d6-d054-44e3-a5dd-cd0212b91595 submitted
2018-08-11 03:02:06,220 cromwell-system-akka.dispatchers.engine-dispatcher-9 INFO - 1 new workflows fetched
2018-08-11 03:02:06,220 cromwell-system-akka.dispatchers.engine-dispatcher-9 INFO - WorkflowManagerActor Starting workflow UUID(ff0330d6-d054-44e3-a5dd-cd0212b91595)
2018-08-11 03:02:06,220 cromwell-system-akka.dispatchers.engine-dispatcher-9 INFO - WorkflowManagerActor Successfully started WorkflowActor-ff0330d6-d054-44e3-a5dd-cd0212b91595
2018-08-11 03:02:06,220 cromwell-system-akka.dispatchers.engine-dispatcher-9 INFO - Retrieved 1 workflows from the WorkflowStoreActor
2018-08-11 03:02:06,227 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - MaterializeWorkflowDescriptorActor [UUID(ff0330d6)]: Parsing workflow as WDL 1.0
2018-08-11 03:02:06,404 cromwell-system-akka.dispatchers.engine-dispatcher-9 INFO - WorkflowExecutionActor-7ca193a0-b723-485e-ade2-c2fa8d115f5d [UUID(7ca193a0)]: Workflow passthrough_value complete. Final Outputs:
{
"passthrough_value.z": 25
}
StandardTestCaseSpec:
- should successfully run super_massive_array_output !!! IGNORED !!!
- should fail during execution missing_input_failure_papiv1 !!! IGNORED !!!
2018-08-11 03:02:06,564 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - MaterializeWorkflowDescriptorActor [UUID(ff0330d6)]: Call-to-Backend assignments: requester_pays_engine_functions.functions -> Papi
2018-08-11 03:02:06,618 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowExecutionActor-6de9f48d-48df-41b7-be56-a22257793872 [UUID(6de9f48d)]: Starting restart_while_failing.A, restart_while_failing.B
2018-08-11 03:02:06,802 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor WorkflowActor-7ca193a0-b723-485e-ade2-c2fa8d115f5d is in a terminal state: WorkflowSucceededState
2018-08-11 03:02:07,346 cromwell-system-akka.dispatchers.api-dispatcher-61 INFO - WDL (1.0) workflow 059afb47-b7a6-45d0-bf55-f1ce03def37b submitted
2018-08-11 03:02:08,002 cromwell-system-akka.dispatchers.api-dispatcher-61 INFO - Unspecified type (Unspecified version) workflow 45af4273-a746-45ac-9f31-1fd0c6421ea5 submitted
2018-08-11 03:02:08,151 cromwell-system-akka.dispatchers.backend-dispatcher-43 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(bfe074e7)draft3_read_file_limits.readString:NA:1]: `dd if=/dev/zero of=file_256k bs=256k count=1`
2018-08-11 03:02:08,171 cromwell-system-akka.dispatchers.backend-dispatcher-38 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(819450a6)length.lens:NA:1]: `echo whatevs`
2018-08-11 03:02:08,172 cromwell-system-akka.dispatchers.backend-dispatcher-39 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(bfe074e7)draft3_read_file_limits.readMap:NA:1]: `dd if=/dev/zero of=file_256k bs=256k count=1`
2018-08-11 03:02:08,271 cromwell-system-akka.dispatchers.engine-dispatcher-9 INFO - 2 new workflows fetched
2018-08-11 03:02:08,271 cromwell-system-akka.dispatchers.engine-dispatcher-9 INFO - WorkflowManagerActor Starting workflow UUID(059afb47-b7a6-45d0-bf55-f1ce03def37b)
2018-08-11 03:02:08,271 cromwell-system-akka.dispatchers.engine-dispatcher-9 INFO - WorkflowManagerActor Successfully started WorkflowActor-059afb47-b7a6-45d0-bf55-f1ce03def37b
2018-08-11 03:02:08,271 cromwell-system-akka.dispatchers.engine-dispatcher-9 INFO - WorkflowManagerActor Starting workflow UUID(45af4273-a746-45ac-9f31-1fd0c6421ea5)
2018-08-11 03:02:08,272 cromwell-system-akka.dispatchers.engine-dispatcher-9 INFO - WorkflowManagerActor Successfully started WorkflowActor-45af4273-a746-45ac-9f31-1fd0c6421ea5
2018-08-11 03:02:08,272 cromwell-system-akka.dispatchers.engine-dispatcher-9 INFO - Retrieved 2 workflows from the WorkflowStoreActor
2018-08-11 03:02:08,279 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - MaterializeWorkflowDescriptorActor [UUID(45af4273)]: Parsing workflow as WDL draft-2
2018-08-11 03:02:08,298 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(059afb47)]: Parsing workflow as WDL 1.0
2018-08-11 03:02:08,701 cromwell-system-akka.dispatchers.backend-dispatcher-38 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(bfe074e7)draft3_read_file_limits.readInt:NA:1]: `dd if=/dev/zero of=file_256k bs=256k count=1`
2018-08-11 03:02:08,715 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(059afb47)]: Call-to-Backend assignments: optional_declarations.strings2 -> Papi, optional_declarations.strings -> Papi
2018-08-11 03:02:08,797 cromwell-system-akka.dispatchers.engine-dispatcher-9 INFO - WorkflowExecutionActor-6de9f48d-48df-41b7-be56-a22257793872 [UUID(6de9f48d)]: Starting restart_while_failing.sleep_exit (5 shards)
2018-08-11 03:02:08,827 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - MaterializeWorkflowDescriptorActor [UUID(45af4273)]: Call-to-Backend assignments: ifs_in_scatters.mirror -> Papi, ifs_in_scatters.init -> Papi, ifs_in_scatters.validate_int -> Papi
2018-08-11 03:02:09,038 cromwell-system-akka.dispatchers.backend-dispatcher-43 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(bfe074e7)draft3_read_file_limits.readObject:NA:1]: `dd if=/dev/zero of=file_256k bs=256k count=1`
…2018-08-11 03:02:09,128 cromwell-system-akka.dispatchers.backend-dispatcher-39 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(6de9f48d)restart_while_failing.B:NA:1]: `sleep 1
exit 0`
2018-08-11 03:02:09,154 cromwell-system-akka.dispatchers.backend-dispatcher-39 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(bfe074e7)draft3_read_file_limits.readLines:NA:1]: `dd if=/dev/zero of=file_256k bs=256k count=1`
2018-08-11 03:02:09,203 cromwell-system-akka.dispatchers.api-dispatcher-61 INFO - Unspecified type (Unspecified version) workflow c09bd460-da85-453c-a23a-3662f815d33d submitted
2018-08-11 03:02:09,468 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - 1 new workflows fetched
2018-08-11 03:02:09,469 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowManagerActor Starting workflow UUID(c09bd460-da85-453c-a23a-3662f815d33d)
2018-08-11 03:02:09,469 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowManagerActor Successfully started WorkflowActor-c09bd460-da85-453c-a23a-3662f815d33d
2018-08-11 03:02:09,469 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - Retrieved 1 workflows from the WorkflowStoreActor
2018-08-11 03:02:09,560 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - MaterializeWorkflowDescriptorActor [UUID(c09bd460)]: Parsing workflow as WDL draft-2
2018-08-11 03:02:09,661 cromwell-system-akka.dispatchers.backend-dispatcher-43 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(bfe074e7)draft3_read_file_limits.readBoolean:NA:1]: `dd if=/dev/zero of=file_256k bs=256k count=1`
2018-08-11 03:02:09,669 cromwell-system-akka.dispatchers.backend-dispatcher-39 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(bfe074e7)draft3_read_file_limits.readFloat:NA:1]: `dd if=/dev/zero of=file_256k bs=256k count=1`
2018-08-11 03:02:09,696 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - MaterializeWorkflowDescriptorActor [UUID(c09bd460)]: Call-to-Backend assignments: filearrayoutput.createFileArray -> Papi, filearrayoutput.combiner -> Papi
2018-08-11 03:02:09,946 cromwell-system-akka.dispatchers.backend-dispatcher-43 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(bfe074e7)draft3_read_file_limits.readObjects:NA:1]: `dd if=/dev/zero of=file_256k bs=256k count=1`
2018-08-11 03:02:09,956 cromwell-system-akka.dispatchers.backend-dispatcher-39 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(bfe074e7)draft3_read_file_limits.readJson:NA:1]: `dd if=/dev/zero of=file_256k bs=256k count=1`
2018-08-11 03:02:10,065 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - Unspecified type (Unspecified version) workflow bcfc89df-a09b-4366-b3fd-9ca3ad53437a submitted
2018-08-11 03:02:10,721 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - 1 new workflows fetched
2018-08-11 03:02:10,722 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowManagerActor Starting workflow UUID(bcfc89df-a09b-4366-b3fd-9ca3ad53437a)
2018-08-11 03:02:10,722 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowManagerActor Successfully started WorkflowActor-bcfc89df-a09b-4366-b3fd-9ca3ad53437a
2018-08-11 03:02:10,722 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - Retrieved 1 workflows from the WorkflowStoreActor
2018-08-11 03:02:10,722 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - Unspecified type (Unspecified version) workflow 78f788f6-f7be-411b-b507-87d36e8c153b submitted
2018-08-11 03:02:10,795 cromwell-system-akka.dispatchers.api-dispatcher-61 INFO - Unspecified type (Unspecified version) workflow 26d179c7-8d97-4707-8a5b-ae99587aad82 submitted
2018-08-11 03:02:10,859 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - MaterializeWorkflowDescriptorActor [UUID(bcfc89df)]: Parsing workflow as WDL draft-2
2018-08-11 03:02:10,876 cromwell-system-akka.dispatchers.backend-dispatcher-43 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(bfe074e7)draft3_read_file_limits.readTsv:NA:1]: `dd if=/dev/zero of=file_256k bs=256k count=1`
2018-08-11 03:02:11,171 cromwell-system-akka.dispatchers.backend-dispatcher-39 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(6de9f48d)restart_while_failing.A:NA:1]: `sleep 300
exit 1`
2018-08-11 03:02:11,186 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - MaterializeWorkflowDescriptorActor [UUID(bcfc89df)]: Call-to-Backend assignments: chain_fail.conditional_fail -> Papi, chain_fail.fail -> Papi, chain_fail.scatter_fail -> Papi, wf_hello.hello -> Papi
2018-08-11 03:02:11,210 cromwell-system-akka.dispatchers.backend-dispatcher-43 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(6de9f48d)restart_while_failing.sleep_exit:3:1]: `sleep 60
exit 0`
2018-08-11 03:02:11,267 cromwell-system-akka.dispatchers.backend-dispatcher-43 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(6de9f48d)restart_while_failing.sleep_exit:2:1]: `sleep 20
exit 0`
2018-08-11 03:02:11,426 cromwell-system-akka.dispatchers.api-dispatcher-61 INFO - Unspecified type (Unspecified version) workflow 4fe7437b-4df5-479d-9ae5-ecf3a0261322 submitted
2018-08-11 03:02:11,590 cromwell-system-akka.dispatchers.backend-dispatcher-39 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(6de9f48d)restart_while_failing.sleep_exit:1:1]: `sleep 60
exit 0`
2018-08-11 03:02:11,724 cromwell-system-akka.dispatchers.backend-dispatcher-39 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(6de9f48d)restart_while_failing.sleep_exit:0:1]: `sleep 1
exit 0`
2018-08-11 03:02:11,742 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - 3 new workflows fetched
2018-08-11 03:02:11,742 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowManagerActor Starting workflow UUID(78f788f6-f7be-411b-b507-87d36e8c153b)
2018-08-11 03:02:11,743 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowManagerActor Successfully started WorkflowActor-78f788f6-f7be-411b-b507-87d36e8c153b
2018-08-11 03:02:11,743 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowManagerActor Starting workflow UUID(26d179c7-8d97-4707-8a5b-ae99587aad82)
2018-08-11 03:02:11,743 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowManagerActor Successfully started WorkflowActor-26d179c7-8d97-4707-8a5b-ae99587aad82
2018-08-11 03:02:11,743 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowManagerActor Starting workflow UUID(4fe7437b-4df5-479d-9ae5-ecf3a0261322)
2018-08-11 03:02:11,743 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowManagerActor Successfully started WorkflowActor-4fe7437b-4df5-479d-9ae5-ecf3a0261322
2018-08-11 03:02:11,743 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - Retrieved 3 workflows from the WorkflowStoreActor
2018-08-11 03:02:11,756 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(4fe7437b)]: Parsing workflow as WDL draft-2
2018-08-11 03:02:11,757 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - MaterializeWorkflowDescriptorActor [UUID(78f788f6)]: Parsing workflow as WDL draft-2
2018-08-11 03:02:11,761 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(26d179c7)]: Parsing workflow as WDL draft-2
2018-08-11 03:02:11,833 cromwell-system-akka.dispatchers.backend-dispatcher-39 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(6de9f48d)restart_while_failing.sleep_exit:4:1]: `sleep 30
exit 0`
2018-08-11 03:02:11,903 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - MaterializeWorkflowDescriptorActor [UUID(78f788f6)]: Call-to-Backend assignments: wdl_function_locations.wdl_function_locations_i -> Papi, wdl_function_locations.wdl_function_locations_ii -> Papi
2018-08-11 03:02:11,908 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(4fe7437b)]: Call-to-Backend assignments: arrays_scatters_ifs.printInt -> Papi
2018-08-11 03:02:11,972 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(26d179c7)]: Call-to-Backend assignments: cacheWithinWF.one -> Papi, cacheWithinWF.two -> Papi, cacheWithinWF.twoAgain -> Papi
2018-08-11 03:02:12,096 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - CWL (v1.0) workflow 80b836dc-2a63-49dd-86ee-b065c6e08cf0 submitted
2018-08-11 03:02:12,563 cromwell-system-akka.dispatchers.api-dispatcher-61 INFO - Unspecified type (Unspecified version) workflow 80bcbca9-d880-4e50-ad3c-a8353a8efe64 submitted
2018-08-11 03:02:12,730 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - MaterializeWorkflowDescriptorActor [UUID(12d310ee)]: Call-to-Backend assignments: iwdr_inline_file -> Papi
2018-08-11 03:02:12,731 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(d3618ad6)]: Call-to-Backend assignments: iwdr_input_string_function -> Papi
2018-08-11 03:02:12,769 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - 2 new workflows fetched
2018-08-11 03:02:12,769 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(80b836dc-2a63-49dd-86ee-b065c6e08cf0)
2018-08-11 03:02:12,769 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-80b836dc-2a63-49dd-86ee-b065c6e08cf0
2018-08-11 03:02:12,769 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(80bcbca9-d880-4e50-ad3c-a8353a8efe64)
2018-08-11 03:02:12,769 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-80bcbca9-d880-4e50-ad3c-a8353a8efe64
2018-08-11 03:02:12,770 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - Retrieved 2 workflows from the WorkflowStoreActor
2018-08-11 03:02:12,776 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - MaterializeWorkflowDescriptorActor [UUID(80bcbca9)]: Parsing workflow as WDL draft-2
2018-08-11 03:02:12,778 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(80b836dc)]: Parsing workflow as CWL v1.0
2018-08-11 03:02:12,785 INFO - Pre-Processing /tmp/80b836dc-2a63-49dd-86ee-b065c6e08cf0.temp.9014579877211659533/80b836dc-2a63-49dd-86ee-b065c6e08cf0.cwl
2018-08-11 03:02:12,844 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - MaterializeWorkflowDescriptorActor [UUID(80bcbca9)]: Call-to-Backend assignments: woot.notroot -> Papi
- should successfully run draft3_passthrough_value (15 seconds, 621 milliseconds)
2018-08-11 03:02:13,164 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowExecutionActor-c09bd460-da85-453c-a23a-3662f815d33d [UUID(c09bd460)]: Starting filearrayoutput.createFileArray
2018-08-11 03:02:13,173 cromwell-system-akka.dispatchers.api-dispatcher-61 INFO - Unspecified type (Unspecified version) workflow 1649355b-fec9-427b-b442-9f30b829b457 submitted
2018-08-11 03:02:13,482 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowExecutionActor-45af4273-a746-45ac-9f31-1fd0c6421ea5 [UUID(45af4273)]: Starting ifs_in_scatters.init
2018-08-11 03:02:13,629 cromwell-system-akka.dispatchers.api-dispatcher-61 INFO - Unspecified type (Unspecified version) workflow 18d037d0-63d7-4ff3-a7c1-4dbdc20ce058 submitted
2018-08-11 03:02:13,789 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - 2 new workflows fetched
2018-08-11 03:02:13,789 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor Starting workflow UUID(1649355b-fec9-427b-b442-9f30b829b457)
2018-08-11 03:02:13,796 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor Successfully started WorkflowActor-1649355b-fec9-427b-b442-9f30b829b457
2018-08-11 03:02:13,796 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor Starting workflow UUID(18d037d0-63d7-4ff3-a7c1-4dbdc20ce058)
2018-08-11 03:02:13,796 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor Successfully started WorkflowActor-18d037d0-63d7-4ff3-a7c1-4dbdc20ce058
2018-08-11 03:02:13,796 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - Retrieved 2 workflows from the WorkflowStoreActor
2018-08-11 03:02:13,812 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - MaterializeWorkflowDescriptorActor [UUID(1649355b)]: Parsing workflow as WDL draft-2
2018-08-11 03:02:13,825 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(18d037d0)]: Parsing workflow as WDL draft-2
2018-08-11 03:02:13,845 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(18d037d0)]: Call-to-Backend assignments: retry_for_me.broken_task -> Papi
2018-08-11 03:02:13,924 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - MaterializeWorkflowDescriptorActor [UUID(1649355b)]: Call-to-Backend assignments: mirror_mirror_on_the_wall.mkFile -> Papi, mirror_mirror_on_the_wall.mirror1 -> Papi, mirror_mirror_on_the_wall.mirror2 -> Papi
2018-08-11 03:02:14,103 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - Unspecified type (Unspecified version) workflow ec4559df-aab4-4384-b86f-03a82e94823d submitted
2018-08-11 03:02:14,420 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowExecutionActor-26d179c7-8d97-4707-8a5b-ae99587aad82 [UUID(26d179c7)]: Starting cacheWithinWF.one
2018-08-11 03:02:14,435 cromwell-system-akka.dispatchers.api-dispatcher-61 INFO - Unspecified type (Unspecified version) workflow 8efa7bd2-6c41-40fc-bdf8-d8a1929c99c0 submitted
2018-08-11 03:02:14,809 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - 2 new workflows fetched
2018-08-11 03:02:14,809 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Starting workflow UUID(ec4559df-aab4-4384-b86f-03a82e94823d)
2018-08-11 03:02:14,809 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Successfully started WorkflowActor-ec4559df-aab4-4384-b86f-03a82e94823d
2018-08-11 03:02:14,812 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Starting workflow UUID(8efa7bd2-6c41-40fc-bdf8-d8a1929c99c0)
2018-08-11 03:02:14,815 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Successfully started WorkflowActor-8efa7bd2-6c41-40fc-bdf8-d8a1929c99c0
2018-08-11 03:02:14,820 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - Retrieved 2 workflows from the WorkflowStoreActor
2018-08-11 03:02:14,820 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(8efa7bd2)]: Parsing workflow as WDL draft-2
2018-08-11 03:02:14,838 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - MaterializeWorkflowDescriptorActor [UUID(ec4559df)]: Parsing workflow as WDL draft-2
2018-08-11 03:02:14,850 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - MaterializeWorkflowDescriptorActor [UUID(ec4559df)]: Call-to-Backend assignments: docker_hash_gcr.gcr -> Papi
2018-08-11 03:02:14,872 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(8efa7bd2)]: Call-to-Backend assignments: badExample.bad -> Papi
2018-08-11 03:02:14,876 cromwell-system-akka.dispatchers.api-dispatcher-61 INFO - CWL (v1.0) workflow 5c60a694-7d57-4f86-ba3a-c22de94c935a submitted
2018-08-11 03:02:15,364 cromwell-system-akka.dispatchers.api-dispatcher-61 INFO - Unspecified type (Unspecified version) workflow 88801cb6-a7aa-44a3-94ac-55a8c5dc39aa submitted
2018-08-11 03:02:15,542 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowExecutionActor-45af4273-a746-45ac-9f31-1fd0c6421ea5 [UUID(45af4273)]: Starting ifs_in_scatters.validate_int (5 shards)
2018-08-11 03:02:15,632 cromwell-system-akka.dispatchers.api-dispatcher-61 INFO - Unspecified type (Unspecified version) workflow 8610dbc7-7492-4141-ab1a-ce7cb9c4b73f submitted
2018-08-11 03:02:15,831 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - 3 new workflows fetched
2018-08-11 03:02:15,831 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowManagerActor Starting workflow UUID(5c60a694-7d57-4f86-ba3a-c22de94c935a)
2018-08-11 03:02:15,831 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowManagerActor Successfully started WorkflowActor-5c60a694-7d57-4f86-ba3a-c22de94c935a
2018-08-11 03:02:15,832 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowManagerActor Starting workflow UUID(88801cb6-a7aa-44a3-94ac-55a8c5dc39aa)
2018-08-11 03:02:15,832 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowManagerActor Successfully started WorkflowActor-88801cb6-a7aa-44a3-94ac-55a8c5dc39aa
2018-08-11 03:02:15,832 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowManagerActor Starting workflow UUID(8610dbc7-7492-4141-ab1a-ce7cb9c4b73f)
2018-08-11 03:02:15,832 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowManagerActor Successfully started WorkflowActor-8610dbc7-7492-4141-ab1a-ce7cb9c4b73f
2018-08-11 03:02:15,832 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - Retrieved 3 workflows from the WorkflowStoreActor
2018-08-11 03:02:15,835 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - MaterializeWorkflowDescriptorActor [UUID(8610dbc7)]: Parsing workflow as WDL draft-2
2018-08-11 03:02:15,838 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - MaterializeWorkflowDescriptorActor [UUID(5c60a694)]: Parsing workflow as CWL v1.0
2018-08-11 03:02:15,847 INFO - Pre-Processing /tmp/5c60a694-7d57-4f86-ba3a-c22de94c935a.temp.7801505479184996304/5c60a694-7d57-4f86-ba3a-c22de94c935a.cwl
2018-08-11 03:02:15,873 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - MaterializeWorkflowDescriptorActor [UUID(88801cb6)]: Parsing workflow as WDL draft-2
2018-08-11 03:02:16,123 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - MaterializeWorkflowDescriptorActor [UUID(8610dbc7)]: Call-to-Backend assignments: wf_hello.hello -> Papi
2018-08-11 03:02:16,201 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - MaterializeWorkflowDescriptorActor [UUID(88801cb6)]: Call-to-Backend assignments: test.echo_str_2 -> Papi, test.echo_str -> Papi
2018-08-11 03:02:16,207 cromwell-system-akka.dispatchers.api-dispatcher-61 INFO - Unspecified type (Unspecified version) workflow 4e18e509-c682-4276-9543-e1ea9f7a58dc submitted
2018-08-11 03:02:16,583 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - Unspecified type (Unspecified version) workflow 88a6fda1-fa5d-456b-8ebd-057a921d230e submitted
2018-08-11 03:02:16,731 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(80b836dc)]: Call-to-Backend assignments: 80b836dc-2a63-49dd-86ee-b065c6e08cf0.cwl -> Papi
2018-08-11 03:02:16,852 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - 2 new workflows fetched
2018-08-11 03:02:16,852 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowManagerActor Starting workflow UUID(4e18e509-c682-4276-9543-e1ea9f7a58dc)
2018-08-11 03:02:16,853 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowManagerActor Successfully started WorkflowActor-4e18e509-c682-4276-9543-e1ea9f7a58dc
2018-08-11 03:02:16,853 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowManagerActor Starting workflow UUID(88a6fda1-fa5d-456b-8ebd-057a921d230e)
2018-08-11 03:02:16,853 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowManagerActor Successfully started WorkflowActor-88a6fda1-fa5d-456b-8ebd-057a921d230e
2018-08-11 03:02:16,853 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - Retrieved 2 workflows from the WorkflowStoreActor
2018-08-11 03:02:16,860 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(88a6fda1)]: Parsing workflow as WDL draft-2
2018-08-11 03:02:16,880 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(4e18e509)]: Parsing workflow as WDL draft-2
2018-08-11 03:02:16,962 cromwell-system-akka.dispatchers.api-dispatcher-61 INFO - Unspecified type (Unspecified version) workflow 6508de0e-3a2a-41fa-9b02-b92212090765 submitted
2018-08-11 03:02:16,975 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(4e18e509)]: Call-to-Backend assignments: scoping_wf.scoping_task -> Papi
2018-08-11 03:02:17,167 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(88a6fda1)]: Call-to-Backend assignments: read_write_json.make_some_json -> Papi, read_write_json.success -> Papi, read_write_json.round_trip -> Papi
2018-08-11 03:02:17,317 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - WDL (1.0) workflow 8985f7c2-eee4-486d-9c02-f367b943e683 submitted
2018-08-11 03:02:17,630 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - Unspecified type (Unspecified version) workflow f8901107-48c1-427d-a503-d1b399a14673 submitted
2018-08-11 03:02:17,872 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - 3 new workflows fetched
2018-08-11 03:02:17,873 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowManagerActor Starting workflow UUID(6508de0e-3a2a-41fa-9b02-b92212090765)
2018-08-11 03:02:17,873 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowManagerActor Successfully started WorkflowActor-6508de0e-3a2a-41fa-9b02-b92212090765
2018-08-11 03:02:17,873 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowManagerActor Starting workflow UUID(8985f7c2-eee4-486d-9c02-f367b943e683)
2018-08-11 03:02:17,873 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowManagerActor Successfully started WorkflowActor-8985f7c2-eee4-486d-9c02-f367b943e683
2018-08-11 03:02:17,873 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowManagerActor Starting workflow UUID(f8901107-48c1-427d-a503-d1b399a14673)
2018-08-11 03:02:17,873 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowManagerActor Successfully started WorkflowActor-f8901107-48c1-427d-a503-d1b399a14673
2018-08-11 03:02:17,873 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - Retrieved 3 workflows from the WorkflowStoreActor
2018-08-11 03:02:17,881 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - MaterializeWorkflowDescriptorActor [UUID(f8901107)]: Parsing workflow as WDL draft-2
2018-08-11 03:02:17,885 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - MaterializeWorkflowDescriptorActor [UUID(6508de0e)]: Parsing workflow as WDL draft-2
2018-08-11 03:02:17,885 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(8985f7c2)]: Parsing workflow as WDL 1.0
2018-08-11 03:02:18,089 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - Unspecified type (Unspecified version) workflow 23085617-abc7-4261-bb3f-66220da5f115 submitted
2018-08-11 03:02:18,173 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - MaterializeWorkflowDescriptorActor [UUID(6508de0e)]: Call-to-Backend assignments: gpu_on_papi.task_with_tesla_p100 -> Papi, gpu_on_papi.task_with_tesla_k80 -> Papi
2018-08-11 03:02:18,217 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(8985f7c2)]: Call-to-Backend assignments:
2018-08-11 03:02:18,400 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - MaterializeWorkflowDescriptorActor [UUID(f8901107)]: Call-to-Backend assignments: nested_lookups.m2 -> Papi, nested_lookups.needs_wf_input -> Papi, nested_lookups.m1 -> Papi, nested_lookups.throwaway2 -> Papi, nested_lookups.throwaway1 -> Papi
2018-08-11 03:02:18,577 cromwell-system-akka.dispatchers.api-dispatcher-61 INFO - Unspecified type (Unspecified version) workflow 1073fc07-2e07-49c7-8053-7a35a0dd0ec9 submitted
2018-08-11 03:02:18,887 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - 2 new workflows fetched
2018-08-11 03:02:18,887 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowManagerActor Starting workflow UUID(23085617-abc7-4261-bb3f-66220da5f115)
2018-08-11 03:02:18,887 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowManagerActor Successfully started WorkflowActor-23085617-abc7-4261-bb3f-66220da5f115
2018-08-11 03:02:18,887 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowManagerActor Starting workflow UUID(1073fc07-2e07-49c7-8053-7a35a0dd0ec9)
2018-08-11 03:02:18,887 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowManagerActor Successfully started WorkflowActor-1073fc07-2e07-49c7-8053-7a35a0dd0ec9
2018-08-11 03:02:18,887 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - Retrieved 2 workflows from the WorkflowStoreActor
2018-08-11 03:02:18,892 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - MaterializeWorkflowDescriptorActor [UUID(1073fc07)]: Parsing workflow as WDL draft-2
2018-08-11 03:02:18,895 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(23085617)]: Parsing workflow as WDL draft-2
2018-08-11 03:02:19,010 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - MaterializeWorkflowDescriptorActor [UUID(1073fc07)]: Call-to-Backend assignments: scattergather.prepare -> Papi, scattergather.analysis -> Papi, scattergather.gather -> Papi
2018-08-11 03:02:19,021 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(23085617)]: Call-to-Backend assignments: simple_if.runMeTrue -> Papi, simple_if.runMeFalse -> Papi
2018-08-11 03:02:19,196 cromwell-system-akka.dispatchers.api-dispatcher-61 INFO - Unspecified type (Unspecified version) workflow df597859-2612-4fb7-acc2-40bfef9dfe69 submitted
2018-08-11 03:02:19,662 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - Unspecified type (Unspecified version) workflow 86bc228d-cda7-4609-b7fb-c4c4dae25137 submitted
2018-08-11 03:02:19,917 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - 2 new workflows fetched
2018-08-11 03:02:19,917 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(df597859-2612-4fb7-acc2-40bfef9dfe69)
2018-08-11 03:02:19,917 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-df597859-2612-4fb7-acc2-40bfef9dfe69
2018-08-11 03:02:19,918 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(86bc228d-cda7-4609-b7fb-c4c4dae25137)
2018-08-11 03:02:19,918 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-86bc228d-cda7-4609-b7fb-c4c4dae25137
2018-08-11 03:02:19,918 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - Retrieved 2 workflows from the WorkflowStoreActor
2018-08-11 03:02:19,920 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - MaterializeWorkflowDescriptorActor [UUID(86bc228d)]: Parsing workflow as WDL draft-2
2018-08-11 03:02:19,939 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(df597859)]: Parsing workflow as WDL draft-2
2018-08-11 03:02:19,949 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - WDL (1.0) workflow df304bdb-3f07-487a-bb05-6214943d9d79 submitted
2018-08-11 03:02:20,054 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(df597859)]: Call-to-Backend assignments: size_wf.size_task -> Papi
2018-08-11 03:02:20,147 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - MaterializeWorkflowDescriptorActor [UUID(86bc228d)]: Call-to-Backend assignments: declarations_in_ifs.double_j -> Papi, declarations_in_ifs.double_i -> Papi
2018-08-11 03:02:20,403 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - WDL (1.0) workflow 3605344c-9aa4-49b2-93fe-0c234ec969c0 submitted
2018-08-11 03:02:20,693 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - Unspecified type (Unspecified version) workflow da0a3242-9e47-4ffc-9b50-da4fe1997414 submitted
2018-08-11 03:02:20,877 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - MaterializeWorkflowDescriptorActor [UUID(5c60a694)]: Call-to-Backend assignments: machineTypeTool -> Papi
2018-08-11 03:02:20,927 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - CWL (v1.0) workflow 6bd00416-4477-42d8-8ad9-6f8104a6b9b0 submitted
2018-08-11 03:02:20,943 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - 4 new workflows fetched
2018-08-11 03:02:20,943 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Starting workflow UUID(df304bdb-3f07-487a-bb05-6214943d9d79)
2018-08-11 03:02:20,943 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Successfully started WorkflowActor-df304bdb-3f07-487a-bb05-6214943d9d79
2018-08-11 03:02:20,943 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Starting workflow UUID(3605344c-9aa4-49b2-93fe-0c234ec969c0)
2018-08-11 03:02:20,943 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Successfully started WorkflowActor-3605344c-9aa4-49b2-93fe-0c234ec969c0
2018-08-11 03:02:20,943 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Starting workflow UUID(da0a3242-9e47-4ffc-9b50-da4fe1997414)
2018-08-11 03:02:20,944 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Successfully started WorkflowActor-da0a3242-9e47-4ffc-9b50-da4fe1997414
2018-08-11 03:02:20,944 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Starting workflow UUID(6bd00416-4477-42d8-8ad9-6f8104a6b9b0)
2018-08-11 03:02:20,944 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Successfully started WorkflowActor-6bd00416-4477-42d8-8ad9-6f8104a6b9b0
2018-08-11 03:02:20,945 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - Retrieved 4 workflows from the WorkflowStoreActor
2018-08-11 03:02:20,947 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(6bd00416)]: Parsing workflow as CWL v1.0
2018-08-11 03:02:20,951 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - MaterializeWorkflowDescriptorActor [UUID(df304bdb)]: Parsing workflow as WDL 1.0
2018-08-11 03:02:20,952 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(3605344c)]: Parsing workflow as WDL 1.0
2018-08-11 03:02:20,957 INFO - Pre-Processing /tmp/6bd00416-4477-42d8-8ad9-6f8104a6b9b0.temp.7201781026225546149/6bd00416-4477-42d8-8ad9-6f8104a6b9b0.cwl
2018-08-11 03:02:20,968 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - MaterializeWorkflowDescriptorActor [UUID(da0a3242)]: Parsing workflow as WDL draft-2
2018-08-11 03:02:21,029 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - MaterializeWorkflowDescriptorActor [UUID(df304bdb)]: Call-to-Backend assignments:
2018-08-11 03:02:21,072 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(3605344c)]: Call-to-Backend assignments: requester_pays_localization.localize -> Papi
2018-08-11 03:02:21,170 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - MaterializeWorkflowDescriptorActor [UUID(da0a3242)]: Call-to-Backend assignments: globbingindex.glob_task -> Papi
2018-08-11 03:02:21,302 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowExecutionActor-8985f7c2-eee4-486d-9c02-f367b943e683 [UUID(8985f7c2)]: Workflow array_indexing complete. Final Outputs:
{
"array_indexing.string_map_deref": 101,
"array_indexing.struct_deref": 55,
"array_indexing.int_map_deref": "int_value",
"array_indexing.array_deref": 25
}
2018-08-11 03:02:21,309 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor WorkflowActor-8985f7c2-eee4-486d-9c02-f367b943e683 is in a terminal state: WorkflowSucceededState
2018-08-11 03:02:21,560 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - Unspecified type (Unspecified version) workflow 9a862b7e-13d0-4b63-a747-4c17104b4918 submitted
- should successfully run refresh_token_sub_workflow !!! IGNORED !!!
2018-08-11 03:02:21,850 cromwell-system-akka.dispatchers.api-dispatcher-61 INFO - CWL (v1.0) workflow 888d0319-3bb4-422c-b4ec-ad5c23729330 submitted
2018-08-11 03:02:21,963 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - 2 new workflows fetched
2018-08-11 03:02:21,963 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - WorkflowManagerActor Starting workflow UUID(9a862b7e-13d0-4b63-a747-4c17104b4918)
2018-08-11 03:02:21,963 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - WorkflowManagerActor Successfully started WorkflowActor-9a862b7e-13d0-4b63-a747-4c17104b4918
2018-08-11 03:02:21,964 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - WorkflowManagerActor Starting workflow UUID(888d0319-3bb4-422c-b4ec-ad5c23729330)
2018-08-11 03:02:21,964 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - WorkflowManagerActor Successfully started WorkflowActor-888d0319-3bb4-422c-b4ec-ad5c23729330
2018-08-11 03:02:21,964 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - Retrieved 2 workflows from the WorkflowStoreActor
2018-08-11 03:02:21,980 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - MaterializeWorkflowDescriptorActor [UUID(888d0319)]: Parsing workflow as CWL v1.0
2018-08-11 03:02:21,985 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - MaterializeWorkflowDescriptorActor [UUID(9a862b7e)]: Parsing workflow as WDL draft-2
2018-08-11 03:02:22,036 INFO - Pre-Processing /tmp/888d0319-3bb4-422c-b4ec-ad5c23729330.temp.2973283434048042376/888d0319-3bb4-422c-b4ec-ad5c23729330.cwl
2018-08-11 03:02:22,175 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - MaterializeWorkflowDescriptorActor [UUID(9a862b7e)]: Call-to-Backend assignments: declarations_as_nodes.t1 -> Papi, declarations_as_nodes.t4 -> Papi, declarations_as_nodes.t3 -> Papi, declarations_as_nodes.t2 -> Papi
2018-08-11 03:02:22,304 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - Unspecified type (Unspecified version) workflow 106ab6ed-a8de-45e3-aaf2-f8136ed1c50e submitted
2018-08-11 03:02:22,764 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - WDL (1.0) workflow b60dbf01-8ac7-4207-b0b5-58b664b6768b submitted
2018-08-11 03:02:22,979 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - 2 new workflows fetched
2018-08-11 03:02:22,979 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Starting workflow UUID(106ab6ed-a8de-45e3-aaf2-f8136ed1c50e)
2018-08-11 03:02:22,979 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Successfully started WorkflowActor-106ab6ed-a8de-45e3-aaf2-f8136ed1c50e
2018-08-11 03:02:22,979 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Starting workflow UUID(b60dbf01-8ac7-4207-b0b5-58b664b6768b)
2018-08-11 03:02:22,979 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Successfully started WorkflowActor-b60dbf01-8ac7-4207-b0b5-58b664b6768b
2018-08-11 03:02:22,979 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - Retrieved 2 workflows from the WorkflowStoreActor
2018-08-11 03:02:22,988 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - MaterializeWorkflowDescriptorActor [UUID(106ab6ed)]: Parsing workflow as WDL draft-2
2018-08-11 03:02:23,002 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - MaterializeWorkflowDescriptorActor [UUID(b60dbf01)]: Parsing workflow as WDL 1.0
2018-08-11 03:02:23,023 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - MaterializeWorkflowDescriptorActor [UUID(106ab6ed)]: Call-to-Backend assignments: invalid_runtime_attributes_wf.invalid_runtime_attributes -> Papi
2018-08-11 03:02:23,086 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowExecutionActor-df304bdb-3f07-487a-bb05-6214943d9d79 [UUID(df304bdb)]: Workflow struct_output complete. Final Outputs:
{
"struct_output.myFoo": {
"simple": 5,
"complex": {
"left": [5],
"right": {
"t": true
}
}
}
}
2018-08-11 03:02:23,112 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor WorkflowActor-df304bdb-3f07-487a-bb05-6214943d9d79 is in a terminal state: WorkflowSucceededState
- should fail during execution refresh_token_no_auth_bucket !!! IGNORED !!!
2018-08-11 03:02:23,335 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - WDL (1.0) workflow 0bae37d3-2ac8-4d79-b78f-ce91108498d6 submitted
2018-08-11 03:02:23,589 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - MaterializeWorkflowDescriptorActor [UUID(b60dbf01)]: Call-to-Backend assignments: draft3_nio_file.non_cc_nio_file -> Papi, draft3_nio_file.mk_files -> Papi, draft3_nio_file.nio_file -> Papi, draft3_nio_file.cc_nio_file -> Papi, draft3_nio_file.mk_more_files -> Papi
2018-08-11 03:02:23,995 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - 1 new workflows fetched
2018-08-11 03:02:23,995 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - WorkflowManagerActor Starting workflow UUID(0bae37d3-2ac8-4d79-b78f-ce91108498d6)
2018-08-11 03:02:23,995 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - WorkflowManagerActor Successfully started WorkflowActor-0bae37d3-2ac8-4d79-b78f-ce91108498d6
2018-08-11 03:02:23,995 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - Retrieved 1 workflows from the WorkflowStoreActor
2018-08-11 03:02:24,018 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(0bae37d3)]: Parsing workflow as WDL 1.0
2018-08-11 03:02:24,438 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(0bae37d3)]: Call-to-Backend assignments: draft3_optional_addition.call_me -> Papi
2018-08-11 03:02:24,573 cromwell-system-akka.dispatchers.api-dispatcher-61 INFO - Unspecified type (Unspecified version) workflow f5fda0a4-41e1-4831-8b31-d217e968a68c submitted
2018-08-11 03:02:24,997 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - WDL (1.0) workflow 78e47c58-72a5-4b86-94ac-c9cb17b39ae3 submitted
2018-08-11 03:02:25,017 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - 2 new workflows fetched
2018-08-11 03:02:25,018 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - WorkflowManagerActor Starting workflow UUID(f5fda0a4-41e1-4831-8b31-d217e968a68c)
2018-08-11 03:02:25,018 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - WorkflowManagerActor Successfully started WorkflowActor-f5fda0a4-41e1-4831-8b31-d217e968a68c
2018-08-11 03:02:25,018 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - WorkflowManagerActor Starting workflow UUID(78e47c58-72a5-4b86-94ac-c9cb17b39ae3)
2018-08-11 03:02:25,018 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - WorkflowManagerActor Successfully started WorkflowActor-78e47c58-72a5-4b86-94ac-c9cb17b39ae3
2018-08-11 03:02:25,018 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - Retrieved 2 workflows from the WorkflowStoreActor
2018-08-11 03:02:25,024 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - MaterializeWorkflowDescriptorActor [UUID(f5fda0a4)]: Parsing workflow as WDL draft-2
2018-08-11 03:02:25,027 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - MaterializeWorkflowDescriptorActor [UUID(78e47c58)]: Parsing workflow as WDL 1.0
2018-08-11 03:02:25,098 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - MaterializeWorkflowDescriptorActor [UUID(f5fda0a4)]: Call-to-Backend assignments: missing_input_failure.hello -> Papi
2018-08-11 03:02:25,152 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - MaterializeWorkflowDescriptorActor [UUID(78e47c58)]: Call-to-Backend assignments: draft3_omitting_outputs.foo -> Papi, foo_in_a_box.foo -> Papi
2018-08-11 03:02:25,228 cromwell-system-akka.dispatchers.backend-dispatcher-42 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(c09bd460)filearrayoutput.createFileArray:NA:1]: `mkdir out
echo "hullo" > out/hello.txt
echo "buh-bye" > out/ciao.txt`
2018-08-11 03:02:25,512 cromwell-system-akka.dispatchers.backend-dispatcher-44 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(45af4273)ifs_in_scatters.validate_int:4:1]: `echo $(( 4 % 2 ))`
2018-08-11 03:02:25,518 cromwell-system-akka.dispatchers.backend-dispatcher-63 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(45af4273)ifs_in_scatters.init:NA:1]: `echo 1`
2018-08-11 03:02:25,589 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - Unspecified type (Unspecified version) workflow 78f81e80-c730-4d1a-9d08-9442d3181a21 submitted
2018-08-11 03:02:25,658 cromwell-system-akka.dispatchers.backend-dispatcher-63 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(45af4273)ifs_in_scatters.validate_int:1:1]: `echo $(( 1 % 2 ))`
2018-08-11 03:02:25,742 cromwell-system-akka.dispatchers.backend-dispatcher-41 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(45af4273)ifs_in_scatters.validate_int:0:1]: `echo $(( 0 % 2 ))`
2018-08-11 03:02:26,041 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - 1 new workflows fetched
2018-08-11 03:02:26,042 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(78f81e80-c730-4d1a-9d08-9442d3181a21)
2018-08-11 03:02:26,042 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-78f81e80-c730-4d1a-9d08-9442d3181a21
2018-08-11 03:02:26,042 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - Retrieved 1 workflows from the WorkflowStoreActor
2018-08-11 03:02:26,057 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(78f81e80)]: Parsing workflow as WDL draft-2
2018-08-11 03:02:26,178 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(78f81e80)]: Call-to-Backend assignments:
2018-08-11 03:02:26,183 cromwell-system-akka.dispatchers.api-dispatcher-61 INFO - Unspecified type (Unspecified version) workflow cfb9aa54-ed98-4960-b457-3b6411e60a67 submitted
2018-08-11 03:02:26,255 cromwell-system-akka.dispatchers.backend-dispatcher-63 WARN - Papi [UUID(5c60a694)]: Key/s [memoryMax, cpuMax] is/are not supported by backend. Unsupported attributes will not be part of job executions.
2018-08-11 03:02:26,304 cromwell-system-akka.dispatchers.backend-dispatcher-63 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(45af4273)ifs_in_scatters.validate_int:3:1]: `echo $(( 3 % 2 ))`
- should call cache the second run of backendWithNoDocker !!! IGNORED !!!
2018-08-11 03:02:26,614 cromwell-system-akka.dispatchers.api-dispatcher-61 INFO - Unspecified type (Unspecified version) workflow 989e9d1f-384e-4b14-9ffa-511c6f4f461b submitted
2018-08-11 03:02:26,896 cromwell-system-akka.dispatchers.engine-dispatcher-32 ERROR - WorkflowManagerActor Workflow dbaaf524-3e51-42a4-a4a3-acabad947aae failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673)
at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264)
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291)
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250)
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981)
at com.google.api.client.auth.oauth2.TokenRequest.executeUnparsed(TokenRequest.java:283)
at com.google.api.client.auth.oauth2.TokenRequest.execute(TokenRequest.java:307)
at com.google.api.client.googleapis.auth.oauth2.GoogleCredential.executeRefreshToken(GoogleCredential.java:394)
at com.google.api.client.auth.oauth2.Credential.refreshToken(Credential.java:489)
at com.google.api.client.auth.oauth2.Credential.intercept(Credential.java:217)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:868)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469)
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101)
at scala.Option.map(Option.scala:146)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121)
at scala.util.Success.$anonfun$map$1(Try.scala:251)
at scala.util.Success.map(Try.scala:209)
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288)
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29)
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:02:26,911 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - WorkflowManagerActor WorkflowActor-dbaaf524-3e51-42a4-a4a3-acabad947aae is in a terminal state: WorkflowFailedState
2018-08-11 03:02:26,933 cromwell-system-akka.dispatchers.backend-dispatcher-63 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(45af4273)ifs_in_scatters.validate_int:2:1]: `echo $(( 2 % 2 ))`
2018-08-11 03:02:27,163 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - 2 new workflows fetched
2018-08-11 03:02:27,163 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(cfb9aa54-ed98-4960-b457-3b6411e60a67)
2018-08-11 03:02:27,164 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-cfb9aa54-ed98-4960-b457-3b6411e60a67
2018-08-11 03:02:27,164 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(989e9d1f-384e-4b14-9ffa-511c6f4f461b)
2018-08-11 03:02:27,164 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-989e9d1f-384e-4b14-9ffa-511c6f4f461b
2018-08-11 03:02:27,164 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - Retrieved 2 workflows from the WorkflowStoreActor
2018-08-11 03:02:27,173 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(989e9d1f)]: Parsing workflow as WDL draft-2
2018-08-11 03:02:27,176 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - MaterializeWorkflowDescriptorActor [UUID(cfb9aa54)]: Parsing workflow as WDL draft-2
2018-08-11 03:02:27,608 cromwell-system-akka.dispatchers.engine-dispatcher-31 ERROR - WorkflowManagerActor Workflow 62091ef4-05a2-4b3d-83d6-c084fd798833 failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673)
at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264)
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291)
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250)
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981)
at com.google.api.client.auth.oauth2.TokenRequest.executeUnparsed(TokenRequest.java:283)
at com.google.api.client.auth.oauth2.TokenRequest.execute(TokenRequest.java:307)
at com.google.api.client.googleapis.auth.oauth2.GoogleCredential.executeRefreshToken(GoogleCredential.java:394)
at com.google.api.client.auth.oauth2.Credential.refreshToken(Credential.java:489)
at com.google.api.client.auth.oauth2.Credential.intercept(Credential.java:217)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:868)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469)
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101)
at scala.Option.map(Option.scala:146)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121)
at scala.util.Success.$anonfun$map$1(Try.scala:251)
at scala.util.Success.map(Try.scala:209)
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288)
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29)
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:02:27,635 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor WorkflowActor-62091ef4-05a2-4b3d-83d6-c084fd798833 is in a terminal state: WorkflowFailedState
2018-08-11 03:02:27,650 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(989e9d1f)]: Call-to-Backend assignments: read_file_limits.readFloat -> Papi, read_file_limits.readInt -> Papi, read_file_limits.readObjects -> Papi, read_file_limits.readObject -> Papi, read_file_limits.readLines -> Papi, read_file_limits.readBoolean -> Papi, read_file_limits.readTsv -> Papi, read_file_limits.readString -> Papi, read_file_limits.readJson -> Papi, read_file_limits.readMap -> Papi
2018-08-11 03:02:27,749 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - MaterializeWorkflowDescriptorActor [UUID(cfb9aa54)]: Call-to-Backend assignments: subhello.hello -> Papi, subhello.hello -> Papi, subhello.hello -> Papi
2018-08-11 03:02:27,837 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(6bd00416)]: Call-to-Backend assignments: hello -> Papi
2018-08-11 03:02:28,422 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - WorkflowExecutionActor-4fe7437b-4df5-479d-9ae5-ecf3a0261322 [UUID(4fe7437b)]: Condition met: 'length(row) == 2'. Running conditional section
2018-08-11 03:02:28,439 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - WorkflowExecutionActor-4fe7437b-4df5-479d-9ae5-ecf3a0261322 [UUID(4fe7437b)]: Condition met: 'length(row) == 2'. Running conditional section
2018-08-11 03:02:29,029 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - WDL (1.0) workflow 2081df5a-e04e-44d1-927d-922925d318c2 submitted
2018-08-11 03:02:29,196 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - 1 new workflows fetched
2018-08-11 03:02:29,197 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor Starting workflow UUID(2081df5a-e04e-44d1-927d-922925d318c2)
2018-08-11 03:02:29,197 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor Successfully started WorkflowActor-2081df5a-e04e-44d1-927d-922925d318c2
2018-08-11 03:02:29,197 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - Retrieved 1 workflows from the WorkflowStoreActor
2018-08-11 03:02:29,200 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(2081df5a)]: Parsing workflow as WDL 1.0
2018-08-11 03:02:29,280 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(2081df5a)]: Call-to-Backend assignments: requester_pays_engine_functions.functions -> Papiv2RequesterPays
2018-08-11 03:02:29,438 cromwell-system-akka.dispatchers.api-dispatcher-66 INFO - WDL (1.0) workflow 5e287608-d4be-4014-b70e-625ea2002073 submitted
2018-08-11 03:02:29,648 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowExecutionActor-23085617-abc7-4261-bb3f-66220da5f115 [UUID(23085617)]: Condition met: 'true'. Running conditional section
2018-08-11 03:02:29,648 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowExecutionActor-23085617-abc7-4261-bb3f-66220da5f115 [UUID(23085617)]: Condition NOT met: 'false'. Bypassing conditional section
2018-08-11 03:02:29,751 cromwell-system-akka.dispatchers.api-dispatcher-66 INFO - Unspecified type (Unspecified version) workflow 268b462a-3fec-4474-9073-5b81e5c97cf5 submitted
2018-08-11 03:02:30,069 cromwell-system-akka.dispatchers.api-dispatcher-66 INFO - Unspecified type (Unspecified version) workflow 8afdcac0-73fb-40c8-b234-594ab8972f1f submitted
2018-08-11 03:02:30,224 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - 3 new workflows fetched
2018-08-11 03:02:30,225 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor Starting workflow UUID(5e287608-d4be-4014-b70e-625ea2002073)
2018-08-11 03:02:30,225 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor Successfully started WorkflowActor-5e287608-d4be-4014-b70e-625ea2002073
2018-08-11 03:02:30,225 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor Starting workflow UUID(268b462a-3fec-4474-9073-5b81e5c97cf5)
2018-08-11 03:02:30,226 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor Successfully started WorkflowActor-268b462a-3fec-4474-9073-5b81e5c97cf5
2018-08-11 03:02:30,227 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor Starting workflow UUID(8afdcac0-73fb-40c8-b234-594ab8972f1f)
2018-08-11 03:02:30,228 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor Successfully started WorkflowActor-8afdcac0-73fb-40c8-b234-594ab8972f1f
2018-08-11 03:02:30,228 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - Retrieved 3 workflows from the WorkflowStoreActor
2018-08-11 03:02:30,230 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(8afdcac0)]: Parsing workflow as WDL draft-2
2018-08-11 03:02:30,241 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(5e287608)]: Parsing workflow as WDL 1.0
2018-08-11 03:02:30,267 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - MaterializeWorkflowDescriptorActor [UUID(268b462a)]: Parsing workflow as WDL draft-2
2018-08-11 03:02:30,377 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(8afdcac0)]: Call-to-Backend assignments: local_gcs.readGcsFileFromLocal -> Local, local_gcs.makeGcsFileInJes -> Papi
2018-08-11 03:02:30,422 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(5e287608)]: Call-to-Backend assignments: forkjoin.mkFile -> Papi, forkjoin.join -> Papi, forkjoin.wc -> Papi, forkjoin.grep -> Papi
2018-08-11 03:02:30,422 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - MaterializeWorkflowDescriptorActor [UUID(268b462a)]: Call-to-Backend assignments: wf_hello.hello -> Papi
2018-08-11 03:02:30,467 cromwell-system-akka.dispatchers.api-dispatcher-66 INFO - Unspecified type (Unspecified version) workflow 29014d92-e9bf-4cf3-895e-7b6da6733b7f submitted
2018-08-11 03:02:30,578 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - MaterializeWorkflowDescriptorActor [UUID(888d0319)]: Call-to-Backend assignments: cgrep -> Papi, ps -> Papi, wc -> Papi
2018-08-11 03:02:30,664 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowExecutionActor-23085617-abc7-4261-bb3f-66220da5f115 [UUID(23085617)]: Starting simple_if.runMeTrue
2018-08-11 03:02:30,726 cromwell-system-akka.dispatchers.api-dispatcher-66 INFO - Unspecified type (Unspecified version) workflow d017c0dd-f210-431f-907a-a2b7b899101b submitted
2018-08-11 03:02:30,934 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - Unspecified type (Unspecified version) workflow 5040d120-3eb9-4c03-af9c-1b950c866c55 submitted
- should successfully run inter_scatter_dependencies !!! IGNORED !!!
2018-08-11 03:02:31,098 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - CWL (v1.0) workflow 05f3189b-60be-4251-a662-4a7130e3db57 submitted
2018-08-11 03:02:31,252 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - 4 new workflows fetched
2018-08-11 03:02:31,252 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Starting workflow UUID(29014d92-e9bf-4cf3-895e-7b6da6733b7f)
2018-08-11 03:02:31,256 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Successfully started WorkflowActor-29014d92-e9bf-4cf3-895e-7b6da6733b7f
2018-08-11 03:02:31,256 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Starting workflow UUID(d017c0dd-f210-431f-907a-a2b7b899101b)
2018-08-11 03:02:31,256 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Successfully started WorkflowActor-d017c0dd-f210-431f-907a-a2b7b899101b
2018-08-11 03:02:31,256 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Starting workflow UUID(5040d120-3eb9-4c03-af9c-1b950c866c55)
2018-08-11 03:02:31,256 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Successfully started WorkflowActor-5040d120-3eb9-4c03-af9c-1b950c866c55
2018-08-11 03:02:31,256 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Starting workflow UUID(05f3189b-60be-4251-a662-4a7130e3db57)
2018-08-11 03:02:31,256 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Successfully started WorkflowActor-05f3189b-60be-4251-a662-4a7130e3db57
2018-08-11 03:02:31,256 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - Retrieved 4 workflows from the WorkflowStoreActor
2018-08-11 03:02:31,260 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - MaterializeWorkflowDescriptorActor [UUID(5040d120)]: Parsing workflow as WDL draft-2
2018-08-11 03:02:31,261 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - MaterializeWorkflowDescriptorActor [UUID(05f3189b)]: Parsing workflow as CWL v1.0
2018-08-11 03:02:31,271 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(29014d92)]: Parsing workflow as WDL draft-2
2018-08-11 03:02:31,275 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(d017c0dd)]: Parsing workflow as WDL draft-2
2018-08-11 03:02:31,283 INFO - Pre-Processing /tmp/05f3189b-60be-4251-a662-4a7130e3db57.temp.5990880680797181481/05f3189b-60be-4251-a662-4a7130e3db57.cwl
2018-08-11 03:02:31,330 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(d017c0dd)]: Call-to-Backend assignments: wf_hello.hello -> Papi
2018-08-11 03:02:31,390 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - MaterializeWorkflowDescriptorActor [UUID(5040d120)]: Call-to-Backend assignments: two_step.make_a_file -> Papi, two_step.cat -> Papi, two_step.cgrep -> Papi
2018-08-11 03:02:31,429 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(29014d92)]: Call-to-Backend assignments: multplesourcedarray.source2 -> Papi, multplesourcedarray.source1 -> Papi, multplesourcedarray.source6 -> Papi, multplesourcedarray.source3 -> Papi, multplesourcedarray.source7 -> Papi, multplesourcedarray.source4 -> Papi, multplesourcedarray.consumeFiles -> Papi, multplesourcedarray.consume -> Papi, multplesourcedarray.source5 -> Papi
2018-08-11 03:02:31,489 cromwell-system-akka.dispatchers.api-dispatcher-66 INFO - Unspecified type (Unspecified version) workflow 17529c55-58df-45ff-bd0b-b100d1d903b9 submitted
2018-08-11 03:02:31,850 cromwell-system-akka.dispatchers.engine-dispatcher-33 ERROR - WorkflowManagerActor Workflow 9ba48877-5476-478c-8343-e7cfecccf1b7 failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673)
at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264)
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291)
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250)
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469)
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101)
at scala.Option.map(Option.scala:146)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121)
at scala.util.Success.$anonfun$map$1(Try.scala:251)
at scala.util.Success.map(Try.scala:209)
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288)
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29)
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:02:31,851 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowManagerActor WorkflowActor-9ba48877-5476-478c-8343-e7cfecccf1b7 is in a terminal state: WorkflowFailedState
2018-08-11 03:02:32,013 cromwell-system-akka.dispatchers.api-dispatcher-68 INFO - WDL (1.0) workflow 7269bc5a-c965-45e3-9c16-51fcb0e0d714 submitted
2018-08-11 03:02:32,074 cromwell-system-akka.dispatchers.engine-dispatcher-6 ERROR - WorkflowManagerActor Workflow 1fc6af14-ab85-453d-b6dc-297f3cf9cf65 failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673)
at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264)
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291)
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250)
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981)
at com.google.api.client.auth.oauth2.TokenRequest.executeUnparsed(TokenRequest.java:283)
at com.google.api.client.auth.oauth2.TokenRequest.execute(TokenRequest.java:307)
at com.google.api.client.googleapis.auth.oauth2.GoogleCredential.executeRefreshToken(GoogleCredential.java:394)
at com.google.api.client.auth.oauth2.Credential.refreshToken(Credential.java:489)
at com.google.api.client.auth.oauth2.Credential.intercept(Credential.java:217)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:868)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469)
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101)
at scala.Option.map(Option.scala:146)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121)
at scala.util.Success.$anonfun$map$1(Try.scala:251)
at scala.util.Success.map(Try.scala:209)
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288)
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29)
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:02:32,074 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor WorkflowActor-1fc6af14-ab85-453d-b6dc-297f3cf9cf65 is in a terminal state: WorkflowFailedState
2018-08-11 03:02:32,075 cromwell-system-akka.dispatchers.engine-dispatcher-6 ERROR - WorkflowManagerActor Workflow fdc9eff4-89c2-4454-8ac9-c29c0caa4598 failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673)
at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264)
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291)
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250)
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981)
at com.google.api.client.auth.oauth2.TokenRequest.executeUnparsed(TokenRequest.java:283)
at com.google.api.client.auth.oauth2.TokenRequest.execute(TokenRequest.java:307)
at com.google.api.client.googleapis.auth.oauth2.GoogleCredential.executeRefreshToken(GoogleCredential.java:394)
at com.google.api.client.auth.oauth2.Credential.refreshToken(Credential.java:489)
at com.google.api.client.auth.oauth2.Credential.intercept(Credential.java:217)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:868)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469)
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101)
at scala.Option.map(Option.scala:146)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121)
at scala.util.Success.$anonfun$map$1(Try.scala:251)
at scala.util.Success.map(Try.scala:209)
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288)
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29)
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:02:32,075 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor WorkflowActor-fdc9eff4-89c2-4454-8ac9-c29c0caa4598 is in a terminal state: WorkflowFailedState
2018-08-11 03:02:32,103 cromwell-system-akka.dispatchers.backend-dispatcher-43 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(26d179c7)cacheWithinWF.one:NA:1]: `echo 3844`
2018-08-11 03:02:32,277 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - 2 new workflows fetched
2018-08-11 03:02:32,277 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - WorkflowManagerActor Starting workflow UUID(17529c55-58df-45ff-bd0b-b100d1d903b9)
2018-08-11 03:02:32,277 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - WorkflowManagerActor Successfully started WorkflowActor-17529c55-58df-45ff-bd0b-b100d1d903b9
2018-08-11 03:02:32,277 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - WorkflowManagerActor Starting workflow UUID(7269bc5a-c965-45e3-9c16-51fcb0e0d714)
2018-08-11 03:02:32,277 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - WorkflowManagerActor Successfully started WorkflowActor-7269bc5a-c965-45e3-9c16-51fcb0e0d714
2018-08-11 03:02:32,277 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - Retrieved 2 workflows from the WorkflowStoreActor
2018-08-11 03:02:32,290 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - MaterializeWorkflowDescriptorActor [UUID(17529c55)]: Parsing workflow as WDL draft-2
2018-08-11 03:02:32,300 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - MaterializeWorkflowDescriptorActor [UUID(7269bc5a)]: Parsing workflow as WDL 1.0
2018-08-11 03:02:32,335 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowExecutionActor-78f81e80-c730-4d1a-9d08-9442d3181a21 [UUID(78f81e80)]: Workflow square complete. Final Outputs:
{
"square.doubled": [1, 4]
}
2018-08-11 03:02:32,358 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - MaterializeWorkflowDescriptorActor [UUID(17529c55)]: Call-to-Backend assignments: custom_mount_point.t -> Papi
2018-08-11 03:02:32,373 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor WorkflowActor-78f81e80-c730-4d1a-9d08-9442d3181a21 is in a terminal state: WorkflowSucceededState
2018-08-11 03:02:32,522 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - WorkflowExecutionActor-4fe7437b-4df5-479d-9ae5-ecf3a0261322 [UUID(4fe7437b)]: Starting arrays_scatters_ifs.printInt (2 shards)
2018-08-11 03:02:32,837 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - WDL (1.0) workflow 8f3163de-44c1-42a5-8355-f942d2bb2138 submitted
2018-08-11 03:02:33,081 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowExecutionActor-1073fc07-2e07-49c7-8053-7a35a0dd0ec9 [UUID(1073fc07)]: Starting scattergather.prepare
2018-08-11 03:02:33,150 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - MaterializeWorkflowDescriptorActor [UUID(7269bc5a)]: Call-to-Backend assignments: draft3_call_cache_capoeira.read_files_failOnStderr_expression -> Papi, draft3_call_cache_capoeira.read_files_new_command -> Papi, draft3_call_cache_capoeira.read_copied_files -> Papi, draft3_call_cache_capoeira.make_files_cached -> Papi, draft3_call_cache_capoeira.read_files_without_failOnStderr -> Papi, draft3_call_cache_capoeira.read_files_different_failOnStderr -> Papi, draft3_call_cache_capoeira.read_files -> Papi, draft3_call_cache_capoeira.read_files_non_file_input_switcheroo -> Papi, draft3_call_cache_capoeira.read_files_after_modify -> Papi, draft3_call_cache_capoeira.read_files_inputs_renamed -> Papi, draft3_call_cache_capoeira.read_array_files_rearranged -> Papi, draft3_call_cache_capoeira.modify_file_gcs -> Papi, draft3_call_cache_capoeira.read_files_different_continueOnReturnCode_2 -> Papi, draft3_call_cache_capoeira.read_files_different_docker -> Papi, draft3_call_cache_capoeira.read_files_new_output_expressions -> Papi, draft3_call_cache_capoeira.read_files_without_continueOnReturnCode -> Papi, draft3_call_cache_capoeira.read_files_new_output_names -> Papi, draft3_call_cache_capoeira.read_files_different_continueOnReturnCode -> Papi, draft3_call_cache_capoeira.read_files_whitespace -> Papi, draft3_call_cache_capoeira.make_files -> Papi, draft3_call_cache_capoeira.sleep_some_more -> Papi, draft3_call_cache_capoeira.read_files_swapped -> Papi, draft3_call_cache_capoeira.sleep -> Papi, draft3_call_cache_capoeira.read_array_files -> Papi
2018-08-11 03:02:33,286 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - 1 new workflows fetched
2018-08-11 03:02:33,286 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowManagerActor Starting workflow UUID(8f3163de-44c1-42a5-8355-f942d2bb2138)
2018-08-11 03:02:33,286 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowManagerActor Successfully started WorkflowActor-8f3163de-44c1-42a5-8355-f942d2bb2138
2018-08-11 03:02:33,286 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - Retrieved 1 workflows from the WorkflowStoreActor
2018-08-11 03:02:33,290 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(8f3163de)]: Parsing workflow as WDL 1.0
2018-08-11 03:02:33,479 cromwell-system-akka.dispatchers.api-dispatcher-68 INFO - Unspecified type (Unspecified version) workflow c29e23a5-326d-4527-acee-75f831bfcc7d submitted
2018-08-11 03:02:33,571 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowExecutionActor-ec4559df-aab4-4384-b86f-03a82e94823d [UUID(ec4559df)]: Starting docker_hash_gcr.gcr
2018-08-11 03:02:33,596 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(8f3163de)]: Call-to-Backend assignments:
2018-08-11 03:02:34,119 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - Unspecified type (Unspecified version) workflow b3b9e784-da75-4ce1-a627-40eaeb4a0c65 submitted
2018-08-11 03:02:34,309 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - 2 new workflows fetched
2018-08-11 03:02:34,309 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor Starting workflow UUID(c29e23a5-326d-4527-acee-75f831bfcc7d)
2018-08-11 03:02:34,309 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor Successfully started WorkflowActor-c29e23a5-326d-4527-acee-75f831bfcc7d
2018-08-11 03:02:34,309 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor Starting workflow UUID(b3b9e784-da75-4ce1-a627-40eaeb4a0c65)
2018-08-11 03:02:34,309 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor Successfully started WorkflowActor-b3b9e784-da75-4ce1-a627-40eaeb4a0c65
2018-08-11 03:02:34,309 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - Retrieved 2 workflows from the WorkflowStoreActor
2018-08-11 03:02:34,316 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(b3b9e784)]: Parsing workflow as WDL draft-2
2018-08-11 03:02:34,333 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - MaterializeWorkflowDescriptorActor [UUID(c29e23a5)]: Parsing workflow as WDL draft-2
2018-08-11 03:02:34,454 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - MaterializeWorkflowDescriptorActor [UUID(c29e23a5)]: Call-to-Backend assignments: echo_wf.echo -> Papi
2018-08-11 03:02:34,593 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(b3b9e784)]: Call-to-Backend assignments: optional_declarations.strings -> Papi
2018-08-11 03:02:34,657 cromwell-system-akka.dispatchers.api-dispatcher-68 INFO - Unspecified type (Unspecified version) workflow 180d67b5-fabb-480f-8676-d2eea500799b submitted
2018-08-11 03:02:34,892 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowExecutionActor-3605344c-9aa4-49b2-93fe-0c234ec969c0 [UUID(3605344c)]: Starting requester_pays_localization.localize
2018-08-11 03:02:35,161 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - Unspecified type (Unspecified version) workflow 7f63eea1-9295-4060-aca6-b2dc353c9494 submitted
2018-08-11 03:02:35,329 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - 2 new workflows fetched
2018-08-11 03:02:35,329 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor Starting workflow UUID(180d67b5-fabb-480f-8676-d2eea500799b)
2018-08-11 03:02:35,329 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor Successfully started WorkflowActor-180d67b5-fabb-480f-8676-d2eea500799b
2018-08-11 03:02:35,329 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor Starting workflow UUID(7f63eea1-9295-4060-aca6-b2dc353c9494)
2018-08-11 03:02:35,329 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor Successfully started WorkflowActor-7f63eea1-9295-4060-aca6-b2dc353c9494
2018-08-11 03:02:35,329 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - Retrieved 2 workflows from the WorkflowStoreActor
2018-08-11 03:02:35,336 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - MaterializeWorkflowDescriptorActor [UUID(7f63eea1)]: Parsing workflow as WDL draft-2
2018-08-11 03:02:35,336 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(180d67b5)]: Parsing workflow as WDL draft-2
2018-08-11 03:02:35,378 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - MaterializeWorkflowDescriptorActor [UUID(7f63eea1)]: Call-to-Backend assignments: cont_while_possible_scatter.odd_numbers_only -> Papi
2018-08-11 03:02:35,440 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(180d67b5)]: Call-to-Backend assignments: writeToCache.grepAgain -> Papi, writeToCache.print -> Papi, writeToCache.grep -> Papi
2018-08-11 03:02:35,594 cromwell-system-akka.dispatchers.api-dispatcher-68 INFO - CWL (v1.0) workflow 224c1de6-3524-4568-9f2a-7e254ce0348d submitted
2018-08-11 03:02:36,042 cromwell-system-akka.dispatchers.api-dispatcher-68 INFO - CWL (v1.0) workflow bcf2af35-0d99-4072-ab0c-5f1a64fac90b submitted
2018-08-11 03:02:36,345 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - 2 new workflows fetched
2018-08-11 03:02:36,345 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(224c1de6-3524-4568-9f2a-7e254ce0348d)
2018-08-11 03:02:36,345 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-224c1de6-3524-4568-9f2a-7e254ce0348d
2018-08-11 03:02:36,345 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(bcf2af35-0d99-4072-ab0c-5f1a64fac90b)
2018-08-11 03:02:36,345 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-bcf2af35-0d99-4072-ab0c-5f1a64fac90b
2018-08-11 03:02:36,345 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - Retrieved 2 workflows from the WorkflowStoreActor
2018-08-11 03:02:36,356 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - MaterializeWorkflowDescriptorActor [UUID(224c1de6)]: Parsing workflow as CWL v1.0
2018-08-11 03:02:36,358 INFO - Pre-Processing /tmp/224c1de6-3524-4568-9f2a-7e254ce0348d.temp.66356291548725016/224c1de6-3524-4568-9f2a-7e254ce0348d.cwl
2018-08-11 03:02:36,361 INFO - Pre-Processing /tmp/bcf2af35-0d99-4072-ab0c-5f1a64fac90b.temp.8542738005229085690/bcf2af35-0d99-4072-ab0c-5f1a64fac90b.cwl
2018-08-11 03:02:36,361 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - MaterializeWorkflowDescriptorActor [UUID(bcf2af35)]: Parsing workflow as CWL v1.0
2018-08-11 03:02:36,459 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - WDL (1.0) workflow e1d30b20-1660-4ed6-93df-6455c2ca6573 submitted
- should fail during execution refresh_token_failure !!! IGNORED !!!
2018-08-11 03:02:37,103 WARN - Graceful shutdown took too much time, forcing the shutdown.
2018-08-11 03:02:37,132 WARN - 0 tasks failed to execute before shutdown.
2018-08-11 03:02:37,103 WARN - Graceful shutdown took too much time, forcing the shutdown.
2018-08-11 03:02:37,133 WARN - 0 tasks failed to execute before shutdown.
2018-08-11 03:02:37,155 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - Unspecified type (Unspecified version) workflow 848807ee-0436-4356-aece-177756972877 submitted
2018-08-11 03:02:37,162 ERROR - Test 'successfully run workflow_url_biscayne_sub_wfs' with workflow id 'dbaaf524-3e51-42a4-a4a3-acabad947aae' failed on attempt 1 of 3
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26)
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183)
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181)
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138)
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304)
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125)
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70)
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36)
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93)
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93)
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43)
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44)
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284)
at scala.concurrent.Promise.complete(Promise.scala:49)
at scala.concurrent.Promise.complete$(Promise.scala:48)
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183)
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:02:37,165 ERROR - Test 'call cache the second run of floating_tags' with workflow id '9ba48877-5476-478c-8343-e7cfecccf1b7' failed on attempt 1 of 3
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26)
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183)
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181)
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138)
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304)
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125)
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70)
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36)
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93)
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93)
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43)
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44)
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284)
at scala.concurrent.Promise.complete(Promise.scala:49)
at scala.concurrent.Promise.complete$(Promise.scala:48)
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183)
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:02:37,212 cromwell-system-akka.dispatchers.api-dispatcher-68 INFO - Unspecified type (Unspecified version) workflow 4ce7acb7-1ae4-462d-a95e-ffec8e13ace8 submitted
2018-08-11 03:02:37,218 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - Unspecified type (Unspecified version) workflow 91d6d48d-3a01-4ce3-ac67-f6b6f22a059c submitted
2018-08-11 03:02:37,372 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - 4 new workflows fetched
2018-08-11 03:02:37,372 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(e1d30b20-1660-4ed6-93df-6455c2ca6573)
2018-08-11 03:02:37,372 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-e1d30b20-1660-4ed6-93df-6455c2ca6573
2018-08-11 03:02:37,372 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(848807ee-0436-4356-aece-177756972877)
2018-08-11 03:02:37,373 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-848807ee-0436-4356-aece-177756972877
2018-08-11 03:02:37,373 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(4ce7acb7-1ae4-462d-a95e-ffec8e13ace8)
2018-08-11 03:02:37,373 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-4ce7acb7-1ae4-462d-a95e-ffec8e13ace8
2018-08-11 03:02:37,373 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(91d6d48d-3a01-4ce3-ac67-f6b6f22a059c)
2018-08-11 03:02:37,373 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-91d6d48d-3a01-4ce3-ac67-f6b6f22a059c
2018-08-11 03:02:37,373 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - Retrieved 4 workflows from the WorkflowStoreActor
2018-08-11 03:02:37,376 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(848807ee)]: Parsing workflow as WDL draft-2
2018-08-11 03:02:37,384 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - MaterializeWorkflowDescriptorActor [UUID(4ce7acb7)]: Parsing workflow as WDL draft-2
2018-08-11 03:02:37,389 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(e1d30b20)]: Parsing workflow as WDL 1.0
2018-08-11 03:02:37,431 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(848807ee)]: Call-to-Backend assignments: dont_cache_to_failed_jobs.failing_task -> Papi
2018-08-11 03:02:37,480 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(91d6d48d)]: Parsing workflow as WDL Biscayne
2018-08-11 03:02:37,586 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - MaterializeWorkflowDescriptorActor [UUID(4ce7acb7)]: Call-to-Backend assignments: floating_tags.findAgain -> Papi, floating_tags.echo -> Papi, floating_tags.find -> Papi, floating_tags.echoAgain -> Papi
2018-08-11 03:02:37,695 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(e1d30b20)]: Call-to-Backend assignments: array_io.concat -> Papi, array_io.count_lines -> Papi, array_io.count_lines_array -> Papi, array_io.mk_file -> Papi, array_io.serialize -> Papi
2018-08-11 03:02:37,708 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(91d6d48d)]: Call-to-Backend assignments: foo_wf.add5 -> Papi
2018-08-11 03:02:38,165 WARN - Initiated a temporary lockdown because of exception: An exception occurred while submitting the event to the Sentry server.
2018-08-11 03:02:38,165 ERROR - An exception occurred while sending the event to Sentry.
io.sentry.connection.ConnectionException: An exception occurred while submitting the event to the Sentry server.
at io.sentry.connection.HttpConnection.doSend(HttpConnection.java:216)
at io.sentry.connection.AbstractConnection.send(AbstractConnection.java:76)
at io.sentry.connection.AsyncConnection$EventSubmitter.run(AsyncConnection.java:185)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Caused by: java.net.SocketTimeoutException: connect timed out
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673)
at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264)
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177)
at sun.net.www.protocol.https.HttpsURLConnectionImpl.connect(HttpsURLConnectionImpl.java:153)
at io.sentry.connection.HttpConnection.doSend(HttpConnection.java:168)
... 5 common frames omitted
2018-08-11 03:02:38,624 cromwell-system-akka.dispatchers.api-dispatcher-68 INFO - CWL (v1.0) workflow 57af2395-af84-4d67-9146-27bd93d745f9 submitted
2018-08-11 03:02:38,712 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowExecutionActor-8f3163de-44c1-42a5-8355-f942d2bb2138 [UUID(8f3163de)]: Workflow default_input_overrides complete. Final Outputs:
{
"default_input_overrides.z_out": 50505,
"default_input_overrides.b2_out": 20202,
"default_input_overrides.b_out": 20202,
"default_input_overrides.a2_out": 30303,
"default_input_overrides.d_out": 75,
"default_input_overrides.c2_out": 40404,
"default_input_overrides.c_out": 75,
"default_input_overrides.a_out": 10101,
"default_input_overrides.z2_out": 50505,
"default_input_overrides.d2_out": 75
}
2018-08-11 03:02:38,718 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor WorkflowActor-8f3163de-44c1-42a5-8355-f942d2bb2138 is in a terminal state: WorkflowSucceededState
2018-08-11 03:02:38,980 ERROR - Test 'successfully run workflow_url_http_relative_imports' with workflow id '1fc6af14-ab85-453d-b6dc-297f3cf9cf65' failed on attempt 1 of 3
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26)
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183)
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181)
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138)
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304)
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125)
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70)
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36)
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93)
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93)
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43)
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44)
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284)
at scala.concurrent.Promise.complete(Promise.scala:49)
at scala.concurrent.Promise.complete$(Promise.scala:48)
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183)
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:02:39,000 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - Unspecified type (Unspecified version) workflow e3f1efd0-a097-4103-92fa-0a888f1c39ab submitted
2018-08-11 03:02:39,196 ERROR - Test 'successfully run select_functions' with workflow id '62091ef4-05a2-4b3d-83d6-c084fd798833' failed on attempt 1 of 3
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26)
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183)
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181)
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138)
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304)
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125)
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70)
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36)
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93)
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93)
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43)
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44)
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284)
at scala.concurrent.Promise.complete(Promise.scala:49)
at scala.concurrent.Promise.complete$(Promise.scala:48)
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183)
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:02:39,219 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - Unspecified type (Unspecified version) workflow 2a33a921-66f8-4534-ab8d-bb9cbc388882 submitted
2018-08-11 03:02:39,393 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - MaterializeWorkflowDescriptorActor [UUID(05f3189b)]: Call-to-Backend assignments: iwdr_input_string -> Papi
2018-08-11 03:02:39,409 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - 3 new workflows fetched
2018-08-11 03:02:39,409 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor Starting workflow UUID(57af2395-af84-4d67-9146-27bd93d745f9)
2018-08-11 03:02:39,409 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor Successfully started WorkflowActor-57af2395-af84-4d67-9146-27bd93d745f9
2018-08-11 03:02:39,409 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor Starting workflow UUID(e3f1efd0-a097-4103-92fa-0a888f1c39ab)
2018-08-11 03:02:39,409 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor Successfully started WorkflowActor-e3f1efd0-a097-4103-92fa-0a888f1c39ab
2018-08-11 03:02:39,409 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor Starting workflow UUID(2a33a921-66f8-4534-ab8d-bb9cbc388882)
2018-08-11 03:02:39,409 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor Successfully started WorkflowActor-2a33a921-66f8-4534-ab8d-bb9cbc388882
2018-08-11 03:02:39,409 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - Retrieved 3 workflows from the WorkflowStoreActor
2018-08-11 03:02:39,418 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(2a33a921)]: Parsing workflow as WDL draft-2
2018-08-11 03:02:39,428 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - MaterializeWorkflowDescriptorActor [UUID(57af2395)]: Parsing workflow as CWL v1.0
2018-08-11 03:02:39,453 INFO - Pre-Processing /tmp/57af2395-af84-4d67-9146-27bd93d745f9.temp.4689439469116823829/57af2395-af84-4d67-9146-27bd93d745f9.cwl
2018-08-11 03:02:39,496 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(e3f1efd0)]: Parsing workflow as WDL Biscayne
2018-08-11 03:02:39,792 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(2a33a921)]: Call-to-Backend assignments: selection_functions.makeStringTrue -> Papi, selection_functions.makeStringFalse -> Papi
2018-08-11 03:02:39,794 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(e3f1efd0)]: Call-to-Backend assignments: foo_wf.add5 -> Papi
2018-08-11 03:02:40,052 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - Unspecified type (Unspecified version) workflow 142ef04d-5716-4eee-9c6d-6450d8b1d241 submitted
2018-08-11 03:02:40,432 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - 1 new workflows fetched
2018-08-11 03:02:40,438 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor Starting workflow UUID(142ef04d-5716-4eee-9c6d-6450d8b1d241)
2018-08-11 03:02:40,438 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor Successfully started WorkflowActor-142ef04d-5716-4eee-9c6d-6450d8b1d241
2018-08-11 03:02:40,438 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - Retrieved 1 workflows from the WorkflowStoreActor
2018-08-11 03:02:40,441 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(142ef04d)]: Parsing workflow as WDL draft-2
2018-08-11 03:02:40,688 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(142ef04d)]: Call-to-Backend assignments: complex_types_files.make_true -> Papi, complex_types_files.map_cat -> Papi, complex_types_files.maybe_cats -> Papi, complex_types_files.make_false -> Papi, complex_types_files.make_file -> Papi, complex_types_files.array_cat -> Papi
2018-08-11 03:02:40,841 ERROR - Test 'successfully run space' with workflow id 'fdc9eff4-89c2-4454-8ac9-c29c0caa4598' failed on attempt 1 of 3
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26)
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183)
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181)
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138)
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304)
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125)
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70)
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36)
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93)
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93)
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43)
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44)
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284)
at scala.concurrent.Promise.complete(Promise.scala:49)
at scala.concurrent.Promise.complete$(Promise.scala:48)
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183)
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:02:40,862 cromwell-system-akka.dispatchers.api-dispatcher-67 INFO - Unspecified type (Unspecified version) workflow 3d659be9-2e78-400b-82cf-7bc586b2145e submitted
2018-08-11 03:02:40,893 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - Unspecified type (Unspecified version) workflow 01b6dcd8-938f-4c09-b89c-46c044a5a885 submitted
2018-08-11 03:02:41,448 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - WDL (1.0) workflow c73d78d1-6fd7-4a94-a7fe-95ddfed4aa4b submitted
2018-08-11 03:02:41,449 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - 2 new workflows fetched
2018-08-11 03:02:41,449 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(3d659be9-2e78-400b-82cf-7bc586b2145e)
2018-08-11 03:02:41,449 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-3d659be9-2e78-400b-82cf-7bc586b2145e
2018-08-11 03:02:41,449 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(01b6dcd8-938f-4c09-b89c-46c044a5a885)
2018-08-11 03:02:41,450 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-01b6dcd8-938f-4c09-b89c-46c044a5a885
2018-08-11 03:02:41,450 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - Retrieved 2 workflows from the WorkflowStoreActor
2018-08-11 03:02:41,460 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(01b6dcd8)]: Parsing workflow as WDL draft-2
2018-08-11 03:02:41,463 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - MaterializeWorkflowDescriptorActor [UUID(3d659be9)]: Parsing workflow as WDL draft-2
2018-08-11 03:02:41,551 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(01b6dcd8)]: Call-to-Backend assignments: dot_dir_stuck_running.read_path_that_succeeds_but_does_not_go_to_next_call -> Papi, dot_dir_stuck_running.write_path -> Papi
2018-08-11 03:02:41,608 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - MaterializeWorkflowDescriptorActor [UUID(3d659be9)]: Call-to-Backend assignments: space.goodbye -> Papi, space.hello -> Papi
2018-08-11 03:02:42,075 cromwell-system-akka.dispatchers.api-dispatcher-68 INFO - WDL (1.0) workflow 509baaba-9260-416c-9ee9-b3dc29276eb3 submitted
2018-08-11 03:02:42,469 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - 2 new workflows fetched
2018-08-11 03:02:42,469 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(c73d78d1-6fd7-4a94-a7fe-95ddfed4aa4b)
2018-08-11 03:02:42,469 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-c73d78d1-6fd7-4a94-a7fe-95ddfed4aa4b
2018-08-11 03:02:42,469 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(509baaba-9260-416c-9ee9-b3dc29276eb3)
2018-08-11 03:02:42,469 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-509baaba-9260-416c-9ee9-b3dc29276eb3
2018-08-11 03:02:42,469 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - Retrieved 2 workflows from the WorkflowStoreActor
2018-08-11 03:02:42,482 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(509baaba)]: Parsing workflow as WDL 1.0
2018-08-11 03:02:42,488 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(c73d78d1)]: Parsing workflow as WDL 1.0
2018-08-11 03:02:42,516 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - Unspecified type (Unspecified version) workflow d85656f8-b4f6-4254-877f-67eaf205ca61 submitted
2018-08-11 03:02:42,587 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(509baaba)]: Call-to-Backend assignments: struct_localize_delocalize.struct_delocalize -> Papi, struct_localize_delocalize.struct_localize -> Papi
2018-08-11 03:02:42,589 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(c73d78d1)]: Call-to-Backend assignments:
2018-08-11 03:02:43,065 cromwell-system-akka.dispatchers.api-dispatcher-68 INFO - Unspecified type (Unspecified version) workflow 468f5a17-28ba-48a3-b3cc-61a3d1ab7fe3 submitted
2018-08-11 03:02:43,486 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - 2 new workflows fetched
2018-08-11 03:02:43,487 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor Starting workflow UUID(d85656f8-b4f6-4254-877f-67eaf205ca61)
2018-08-11 03:02:43,487 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor Successfully started WorkflowActor-d85656f8-b4f6-4254-877f-67eaf205ca61
2018-08-11 03:02:43,487 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor Starting workflow UUID(468f5a17-28ba-48a3-b3cc-61a3d1ab7fe3)
2018-08-11 03:02:43,487 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor Successfully started WorkflowActor-468f5a17-28ba-48a3-b3cc-61a3d1ab7fe3
2018-08-11 03:02:43,487 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - Retrieved 2 workflows from the WorkflowStoreActor
2018-08-11 03:02:43,492 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(d85656f8)]: Parsing workflow as WDL draft-2
2018-08-11 03:02:43,494 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(468f5a17)]: Parsing workflow as WDL draft-2
2018-08-11 03:02:43,567 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(468f5a17)]: Call-to-Backend assignments: simple_if.runMeFalse -> Papi, simple_if.runMeTrue -> Papi
2018-08-11 03:02:43,601 cromwell-system-akka.dispatchers.api-dispatcher-68 INFO - Unspecified type (Unspecified version) workflow 970888c3-bda2-4314-9f29-97b938e0da7b submitted
2018-08-11 03:02:44,052 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(d85656f8)]: Call-to-Backend assignments: sub_decls.first_task -> Papi, sub_decls.second_task -> Papi
2018-08-11 03:02:44,471 cromwell-system-akka.dispatchers.api-dispatcher-68 INFO - WDL (1.0) workflow 5f61c4de-3e98-4c84-92e2-559be38bc189 submitted
2018-08-11 03:02:44,506 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - 2 new workflows fetched
2018-08-11 03:02:44,506 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowManagerActor Starting workflow UUID(970888c3-bda2-4314-9f29-97b938e0da7b)
2018-08-11 03:02:44,506 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowManagerActor Successfully started WorkflowActor-970888c3-bda2-4314-9f29-97b938e0da7b
2018-08-11 03:02:44,506 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowManagerActor Starting workflow UUID(5f61c4de-3e98-4c84-92e2-559be38bc189)
2018-08-11 03:02:44,506 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowManagerActor Successfully started WorkflowActor-5f61c4de-3e98-4c84-92e2-559be38bc189
2018-08-11 03:02:44,507 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - Retrieved 2 workflows from the WorkflowStoreActor
2018-08-11 03:02:44,508 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(5f61c4de)]: Parsing workflow as WDL 1.0
2018-08-11 03:02:44,510 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(970888c3)]: Parsing workflow as WDL draft-2
2018-08-11 03:02:44,679 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(970888c3)]: Call-to-Backend assignments: array_literal_locations.array_literal_locations_i -> Papi, array_literal_locations.array_literal_locations_ii -> Papi
2018-08-11 03:02:44,837 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(5f61c4de)]: Call-to-Backend assignments:
2018-08-11 03:02:44,963 cromwell-system-akka.dispatchers.engine-dispatcher-31 ERROR - WorkflowManagerActor Workflow 106ab6ed-a8de-45e3-aaf2-f8136ed1c50e failed (during InitializingWorkflowState): Task invalid_runtime_attributes has an invalid runtime attribute continueOnReturnCode = Valid(WomString(oops))
2018-08-11 03:02:44,965 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor WorkflowActor-106ab6ed-a8de-45e3-aaf2-f8136ed1c50e is in a terminal state: WorkflowFailedState
2018-08-11 03:02:45,256 cromwell-system-akka.dispatchers.api-dispatcher-68 INFO - Unspecified type (Unspecified version) workflow 43c43725-29a7-474d-9f13-77b498af8eb8 submitted
2018-08-11 03:02:45,437 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - MaterializeWorkflowDescriptorActor [UUID(224c1de6)]: Call-to-Backend assignments: interpolatedStrings -> Papi
2018-08-11 03:02:45,525 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - 1 new workflows fetched
2018-08-11 03:02:45,525 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(43c43725-29a7-474d-9f13-77b498af8eb8)
2018-08-11 03:02:45,525 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-43c43725-29a7-474d-9f13-77b498af8eb8
2018-08-11 03:02:45,526 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - Retrieved 1 workflows from the WorkflowStoreActor
2018-08-11 03:02:45,532 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(43c43725)]: Parsing workflow as WDL draft-2
2018-08-11 03:02:45,540 cromwell-system-akka.dispatchers.engine-dispatcher-31 ERROR - WorkflowManagerActor Workflow 43c43725-29a7-474d-9f13-77b498af8eb8 failed (during MaterializingWorkflowDescriptorState): cromwell.engine.workflow.lifecycle.materialization.MaterializeWorkflowDescriptorActor$$anon$1: Workflow input processing failed:
ERROR: Unexpected symbol (line 1, col 15) when parsing 'task'.
Expected lbrace, got }.
task blahblah }{
^
$task = :task :identifier :lbrace $_gen3 $_gen4 :rbrace -> Task( name=$1, declarations=$3, sections=$4 )
at cromwell.engine.workflow.lifecycle.materialization.MaterializeWorkflowDescriptorActor.cromwell$engine$workflow$lifecycle$materialization$MaterializeWorkflowDescriptorActor$$workflowInitializationFailed(MaterializeWorkflowDescriptorActor.scala:209)
at cromwell.engine.workflow.lifecycle.materialization.MaterializeWorkflowDescriptorActor$$anonfun$2.applyOrElse(MaterializeWorkflowDescriptorActor.scala:179)
at cromwell.engine.workflow.lifecycle.materialization.MaterializeWorkflowDescriptorActor$$anonfun$2.applyOrElse(MaterializeWorkflowDescriptorActor.scala:174)
at scala.runtime.AbstractPartialFunction.apply(AbstractPartialFunction.scala:34)
at akka.actor.FSM.processEvent(FSM.scala:670)
at akka.actor.FSM.processEvent$(FSM.scala:667)
at cromwell.engine.workflow.lifecycle.materialization.MaterializeWorkflowDescriptorActor.akka$actor$LoggingFSM$$super$processEvent(MaterializeWorkflowDescriptorActor.scala:132)
at akka.actor.LoggingFSM.processEvent(FSM.scala:806)
at akka.actor.LoggingFSM.processEvent$(FSM.scala:788)
at cromwell.engine.workflow.lifecycle.materialization.MaterializeWorkflowDescriptorActor.processEvent(MaterializeWorkflowDescriptorActor.scala:132)
at akka.actor.FSM.akka$actor$FSM$$processMsg(FSM.scala:664)
at akka.actor.FSM$$anonfun$receive$1.applyOrElse(FSM.scala:658)
at akka.actor.Actor.aroundReceive(Actor.scala:517)
at akka.actor.Actor.aroundReceive$(Actor.scala:515)
at cromwell.engine.workflow.lifecycle.materialization.MaterializeWorkflowDescriptorActor.aroundReceive(MaterializeWorkflowDescriptorActor.scala:132)
at akka.actor.ActorCell.receiveMessage(ActorCell.scala:588)
at akka.actor.ActorCell.invoke(ActorCell.scala:557)
at akka.dispatch.Mailbox.processMailbox(Mailbox.scala:258)
at akka.dispatch.Mailbox.run(Mailbox.scala:225)
at akka.dispatch.Mailbox.exec(Mailbox.scala:235)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:02:45,550 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowManagerActor WorkflowActor-43c43725-29a7-474d-9f13-77b498af8eb8 is in a terminal state: WorkflowFailedState
2018-08-11 03:02:45,789 cromwell-system-akka.dispatchers.api-dispatcher-68 INFO - Unspecified type (Unspecified version) workflow 3e3717bf-63ed-4398-a812-6236dc6a5c9d submitted
2018-08-11 03:02:45,841 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - 338cdc07-5917-4db5-a7dd-96dc6e37615c-SubWorkflowActor-SubWorkflow-draft3_infer_version:-1:1 [UUID(338cdc07)]: Workflow draft3_infer_version complete. Final Outputs:
{
"draft3_infer_version.j": 660
}
2018-08-11 03:02:46,457 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - MaterializeWorkflowDescriptorActor [UUID(bcf2af35)]: Call-to-Backend assignments: step1 -> Papi
2018-08-11 03:02:46,462 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowExecutionActor-989e9d1f-384e-4b14-9ffa-511c6f4f461b [UUID(989e9d1f)]: Starting read_file_limits.readFloat, read_file_limits.readInt, read_file_limits.readObjects, read_file_limits.readObject, read_file_limits.readLines, read_file_limits.readBoolean, read_file_limits.readTsv, read_file_limits.readString, read_file_limits.readJson, read_file_limits.readMap
2018-08-11 03:02:46,548 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - 1 new workflows fetched
2018-08-11 03:02:46,549 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowManagerActor Starting workflow UUID(3e3717bf-63ed-4398-a812-6236dc6a5c9d)
2018-08-11 03:02:46,549 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowManagerActor Successfully started WorkflowActor-3e3717bf-63ed-4398-a812-6236dc6a5c9d
2018-08-11 03:02:46,549 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - Retrieved 1 workflows from the WorkflowStoreActor
2018-08-11 03:02:46,552 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(3e3717bf)]: Parsing workflow as WDL draft-2
2018-08-11 03:02:46,763 cromwell-system-akka.dispatchers.api-dispatcher-67 INFO - WDL (1.0) workflow d224abcb-8f46-4c3d-b78d-af3614e67e64 submitted
2018-08-11 03:02:46,987 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(3e3717bf)]: Call-to-Backend assignments: ifs_in_scatters.mirror -> Papi, ifs_in_scatters.init -> Papi, ifs_in_scatters.validate_int -> Papi, ifs_in_scatters.init -> Papi, ifs_in_scatters.mirror -> Papi, ifs_in_scatters.validate_int -> Papi
2018-08-11 03:02:47,152 cromwell-system-akka.dispatchers.api-dispatcher-68 INFO - Unspecified type (Unspecified version) workflow c0cc1872-5be8-43aa-b059-6d154162648b submitted
2018-08-11 03:02:47,175 cromwell-system-akka.dispatchers.engine-dispatcher-25 ERROR - WorkflowManagerActor Workflow 78f788f6-f7be-411b-b507-87d36e8c153b failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673)
at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264)
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291)
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250)
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469)
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101)
at scala.Option.map(Option.scala:146)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121)
at scala.util.Success.$anonfun$map$1(Try.scala:251)
at scala.util.Success.map(Try.scala:209)
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288)
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29)
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:02:47,175 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor WorkflowActor-78f788f6-f7be-411b-b507-87d36e8c153b is in a terminal state: WorkflowFailedState
2018-08-11 03:02:47,500 cromwell-system-akka.dispatchers.api-dispatcher-67 INFO - Unspecified type (Unspecified version) workflow 9f289b57-a9fe-4508-b98d-561979521498 submitted
2018-08-11 03:02:47,568 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - 3 new workflows fetched
2018-08-11 03:02:47,568 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor Starting workflow UUID(d224abcb-8f46-4c3d-b78d-af3614e67e64)
2018-08-11 03:02:47,568 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor Successfully started WorkflowActor-d224abcb-8f46-4c3d-b78d-af3614e67e64
2018-08-11 03:02:47,568 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor Starting workflow UUID(c0cc1872-5be8-43aa-b059-6d154162648b)
2018-08-11 03:02:47,568 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor Successfully started WorkflowActor-c0cc1872-5be8-43aa-b059-6d154162648b
2018-08-11 03:02:47,568 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor Starting workflow UUID(9f289b57-a9fe-4508-b98d-561979521498)
2018-08-11 03:02:47,568 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor Successfully started WorkflowActor-9f289b57-a9fe-4508-b98d-561979521498
2018-08-11 03:02:47,568 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - Retrieved 3 workflows from the WorkflowStoreActor
2018-08-11 03:02:47,571 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - MaterializeWorkflowDescriptorActor [UUID(d224abcb)]: Parsing workflow as WDL 1.0
2018-08-11 03:02:47,572 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(c0cc1872)]: Parsing workflow as WDL draft-2
2018-08-11 03:02:47,577 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - MaterializeWorkflowDescriptorActor [UUID(9f289b57)]: Parsing workflow as WDL draft-2
2018-08-11 03:02:47,731 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowExecutionActor-c73d78d1-6fd7-4a94-a7fe-95ddfed4aa4b [UUID(c73d78d1)]: Workflow draft3_http_imports complete. Final Outputs:
{
"draft3_http_imports.j": 660
}
2018-08-11 03:02:47,757 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowManagerActor WorkflowActor-c73d78d1-6fd7-4a94-a7fe-95ddfed4aa4b is in a terminal state: WorkflowSucceededState
2018-08-11 03:02:47,771 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(c0cc1872)]: Call-to-Backend assignments: file_outputs_from_input_wf.file_outputs_from_input -> Papi
2018-08-11 03:02:47,776 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - MaterializeWorkflowDescriptorActor [UUID(9f289b57)]: Call-to-Backend assignments: cont_while_possible.delayedTask -> Papi, cont_while_possible.shouldNotStart -> Papi, cont_while_possible.boundToFail -> Papi, cont_while_possible.shouldSucceed -> Papi
2018-08-11 03:02:47,936 cromwell-system-akka.dispatchers.api-dispatcher-67 INFO - Unspecified type (Unspecified version) workflow 5aee7025-daea-49ef-97fc-8355f508563d submitted
2018-08-11 03:02:47,978 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - MaterializeWorkflowDescriptorActor [UUID(d224abcb)]: Call-to-Backend assignments: sizeenginefunction.make_a_file -> Papi, sizeenginefunction.size -> Papi
2018-08-11 03:02:48,030 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowExecutionActor-12d310ee-65df-4ed3-9ac8-8ed5316f7722 [UUID(12d310ee)]: Starting iwdr_inline_file
2018-08-11 03:02:48,086 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - MaterializeWorkflowDescriptorActor [UUID(57af2395)]: Call-to-Backend assignments: cwl-cache-within-workflow.bar -> Papi, cwl-cache-within-workflow.foo -> Papi, cwl-cache-within-workflow.re-bar -> Papi
2018-08-11 03:02:48,227 cromwell-system-akka.dispatchers.api-dispatcher-68 INFO - Unspecified type (Unspecified version) workflow d3fbad9b-3fb1-4f7c-866e-cf2568ef76e5 submitted
2018-08-11 03:02:48,397 cromwell-system-akka.dispatchers.api-dispatcher-67 INFO - WDL (1.0) workflow 4506a204-53c2-42a1-95d8-0ca23ad2a44e submitted
2018-08-11 03:02:48,505 cromwell-system-akka.dispatchers.api-dispatcher-68 INFO - Unspecified type (Unspecified version) workflow 5b027489-94b7-4705-a43c-e68ff1e0ef52 submitted
2018-08-11 03:02:48,592 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - 4 new workflows fetched
2018-08-11 03:02:48,592 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor Starting workflow UUID(5aee7025-daea-49ef-97fc-8355f508563d)
2018-08-11 03:02:48,592 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor Successfully started WorkflowActor-5aee7025-daea-49ef-97fc-8355f508563d
2018-08-11 03:02:48,592 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor Starting workflow UUID(d3fbad9b-3fb1-4f7c-866e-cf2568ef76e5)
2018-08-11 03:02:48,594 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor Successfully started WorkflowActor-d3fbad9b-3fb1-4f7c-866e-cf2568ef76e5
2018-08-11 03:02:48,595 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor Starting workflow UUID(4506a204-53c2-42a1-95d8-0ca23ad2a44e)
2018-08-11 03:02:48,595 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor Successfully started WorkflowActor-4506a204-53c2-42a1-95d8-0ca23ad2a44e
2018-08-11 03:02:48,595 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor Starting workflow UUID(5b027489-94b7-4705-a43c-e68ff1e0ef52)
2018-08-11 03:02:48,595 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor Successfully started WorkflowActor-5b027489-94b7-4705-a43c-e68ff1e0ef52
2018-08-11 03:02:48,595 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - Retrieved 4 workflows from the WorkflowStoreActor
2018-08-11 03:02:48,603 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - MaterializeWorkflowDescriptorActor [UUID(5b027489)]: Parsing workflow as WDL draft-2
2018-08-11 03:02:48,603 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - MaterializeWorkflowDescriptorActor [UUID(4506a204)]: Parsing workflow as WDL 1.0
2018-08-11 03:02:48,603 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(d3fbad9b)]: Parsing workflow as WDL draft-2
2018-08-11 03:02:48,612 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(5aee7025)]: Parsing workflow as WDL draft-2
2018-08-11 03:02:48,691 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - MaterializeWorkflowDescriptorActor [UUID(4506a204)]: Call-to-Backend assignments:
2018-08-11 03:02:48,701 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - WorkflowExecutionActor-b60dbf01-8ac7-4207-b0b5-58b664b6768b [UUID(b60dbf01)]: Starting draft3_nio_file.mk_files, draft3_nio_file.mk_more_files
2018-08-11 03:02:48,741 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(5aee7025)]: Call-to-Backend assignments: dontglobinputs.length -> Papi, dontglobinputs.createfile -> Papi, dontglobinputs.globtask -> Papi
2018-08-11 03:02:48,846 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - MaterializeWorkflowDescriptorActor [UUID(5b027489)]: Call-to-Backend assignments: array_io.count_lines_array -> Papi, array_io.serialize -> Papi, array_io.count_lines -> Papi, array_io.concat -> Papi, array_io.mk_file -> Papi
2018-08-11 03:02:48,997 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(d3fbad9b)]: Call-to-Backend assignments: globbingBehavior.writeFiles -> Papi, globbingBehavior.unexpectedReturnCode -> Papi, globbingBehavior.writeLinks -> Papi
2018-08-11 03:02:49,040 cromwell-system-akka.dispatchers.api-dispatcher-67 INFO - WDL (1.0) workflow 35961b0c-6e06-4d55-8dac-6f62ccea217b submitted
2018-08-11 03:02:49,211 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowExecutionActor-f8901107-48c1-427d-a503-d1b399a14673 [UUID(f8901107)]: Condition met: 'true'. Running conditional section
2018-08-11 03:02:49,244 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowExecutionActor-f8901107-48c1-427d-a503-d1b399a14673 [UUID(f8901107)]: Condition met: 'true'. Running conditional section
2018-08-11 03:02:49,244 cromwell-system-akka.dispatchers.api-dispatcher-68 INFO - Unspecified type (Unspecified version) workflow 2fb6debd-2af2-4054-8b2f-868061c6c4e9 submitted
2018-08-11 03:02:49,445 cromwell-system-akka.dispatchers.api-dispatcher-67 INFO - Unspecified type (Unspecified version) workflow 08ce6481-a38f-4406-b3a1-6b44c21695dd submitted
2018-08-11 03:02:49,613 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - 3 new workflows fetched
2018-08-11 03:02:49,613 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowManagerActor Starting workflow UUID(35961b0c-6e06-4d55-8dac-6f62ccea217b)
2018-08-11 03:02:49,613 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowManagerActor Successfully started WorkflowActor-35961b0c-6e06-4d55-8dac-6f62ccea217b
2018-08-11 03:02:49,613 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowManagerActor Starting workflow UUID(2fb6debd-2af2-4054-8b2f-868061c6c4e9)
2018-08-11 03:02:49,613 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowManagerActor Successfully started WorkflowActor-2fb6debd-2af2-4054-8b2f-868061c6c4e9
2018-08-11 03:02:49,613 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowManagerActor Starting workflow UUID(08ce6481-a38f-4406-b3a1-6b44c21695dd)
2018-08-11 03:02:49,613 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowManagerActor Successfully started WorkflowActor-08ce6481-a38f-4406-b3a1-6b44c21695dd
2018-08-11 03:02:49,613 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - Retrieved 3 workflows from the WorkflowStoreActor
2018-08-11 03:02:49,617 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(35961b0c)]: Parsing workflow as WDL 1.0
2018-08-11 03:02:49,621 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - MaterializeWorkflowDescriptorActor [UUID(08ce6481)]: Parsing workflow as WDL draft-2
2018-08-11 03:02:49,626 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(2fb6debd)]: Parsing workflow as WDL 1.0
2018-08-11 03:02:49,659 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(2fb6debd)]: Call-to-Backend assignments:
2018-08-11 03:02:49,736 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(35961b0c)]: Call-to-Backend assignments: globs.summer -> Papi, globs.int_reader -> Papi, globs.glob_output -> Papi
2018-08-11 03:02:49,828 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - MaterializeWorkflowDescriptorActor [UUID(08ce6481)]: Call-to-Backend assignments: countEvens.countTo -> Papi, sub_workflow_interactions_scatter.secondHelloInScatter -> Papi, sub_workflow_interactions_scatter.helloInScatter -> Papi, sub_workflow_interactions_scatter.read -> Papi, countEvens.filterEvens -> Papi
2018-08-11 03:02:49,930 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - Unspecified type (Unspecified version) workflow 8f4fec30-a485-4bcf-968e-565012cc9eb9 submitted
2018-08-11 03:02:49,951 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowExecutionActor-5f61c4de-3e98-4c84-92e2-559be38bc189 [UUID(5f61c4de)]: Condition NOT met: '(i > 1)'. Bypassing conditional section
2018-08-11 03:02:49,959 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowExecutionActor-5f61c4de-3e98-4c84-92e2-559be38bc189 [UUID(5f61c4de)]: Condition met: '(i > 1)'. Running conditional section
2018-08-11 03:02:49,959 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowExecutionActor-5f61c4de-3e98-4c84-92e2-559be38bc189 [UUID(5f61c4de)]: Condition met: '(i > 1)'. Running conditional section
2018-08-11 03:02:50,423 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - WDL (1.0) workflow b70ad92d-5860-45a4-a065-4bbf8cc38519 submitted
2018-08-11 03:02:50,601 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowExecutionActor-8610dbc7-7492-4141-ab1a-ce7cb9c4b73f [UUID(8610dbc7)]: Starting wf_hello.hello
2018-08-11 03:02:50,630 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - Unspecified type (Unspecified version) workflow a2d48a30-a2d8-466f-9b5c-524998b51391 submitted
2018-08-11 03:02:50,638 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - 3 new workflows fetched
2018-08-11 03:02:50,639 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - WorkflowManagerActor Starting workflow UUID(8f4fec30-a485-4bcf-968e-565012cc9eb9)
2018-08-11 03:02:50,639 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - WorkflowManagerActor Successfully started WorkflowActor-8f4fec30-a485-4bcf-968e-565012cc9eb9
2018-08-11 03:02:50,639 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - WorkflowManagerActor Starting workflow UUID(b70ad92d-5860-45a4-a065-4bbf8cc38519)
2018-08-11 03:02:50,639 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - WorkflowManagerActor Successfully started WorkflowActor-b70ad92d-5860-45a4-a065-4bbf8cc38519
2018-08-11 03:02:50,639 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - WorkflowManagerActor Starting workflow UUID(a2d48a30-a2d8-466f-9b5c-524998b51391)
2018-08-11 03:02:50,639 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - WorkflowManagerActor Successfully started WorkflowActor-a2d48a30-a2d8-466f-9b5c-524998b51391
2018-08-11 03:02:50,639 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - Retrieved 3 workflows from the WorkflowStoreActor
2018-08-11 03:02:50,646 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - MaterializeWorkflowDescriptorActor [UUID(8f4fec30)]: Parsing workflow as WDL draft-2
2018-08-11 03:02:50,647 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(a2d48a30)]: Parsing workflow as WDL draft-2
2018-08-11 03:02:50,650 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - MaterializeWorkflowDescriptorActor [UUID(b70ad92d)]: Parsing workflow as WDL 1.0
2018-08-11 03:02:50,668 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(a2d48a30)]: Call-to-Backend assignments: I_hope_nobody_names_workflows_like_this_as_it_seems_very_unnecessary_.my_task_aliased -> Papi
2018-08-11 03:02:50,770 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - MaterializeWorkflowDescriptorActor [UUID(8f4fec30)]: Call-to-Backend assignments: prefix.pfx -> Papi
2018-08-11 03:02:50,836 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - MaterializeWorkflowDescriptorActor [UUID(b70ad92d)]: Call-to-Backend assignments: draft3_optional_input_from_scatter.input_default_not_used -> Papi
2018-08-11 03:02:50,920 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - 120f534f-d36e-4739-a06f-856a74422cc1-SubWorkflowActor-SubWorkflow-oo:-1:1 [UUID(120f534f)]: Starting subhello.hello
2018-08-11 03:02:50,922 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - 6a39077e-7572-451a-9fe8-4725adf95c04-SubWorkflowActor-SubWorkflow-noib:-1:1 [UUID(6a39077e)]: Starting subhello.hello
2018-08-11 03:02:50,947 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - 30ebe86b-0413-4d85-a660-f93985f57a9f-SubWorkflowActor-SubWorkflow-nob:-1:1 [UUID(30ebe86b)]: Starting subhello.hello
2018-08-11 03:02:51,080 cromwell-system-akka.dispatchers.engine-dispatcher-30 ERROR - WorkflowManagerActor Workflow bcfc89df-a09b-4366-b3fd-9ca3ad53437a failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673)
at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264)
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291)
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250)
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469)
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101)
at scala.Option.map(Option.scala:146)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121)
at scala.util.Success.$anonfun$map$1(Try.scala:251)
at scala.util.Success.map(Try.scala:209)
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288)
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29)
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:02:51,081 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor WorkflowActor-bcfc89df-a09b-4366-b3fd-9ca3ad53437a is in a terminal state: WorkflowFailedState
2018-08-11 03:02:51,112 cromwell-system-akka.dispatchers.engine-dispatcher-30 ERROR - WorkflowManagerActor Workflow 059afb47-b7a6-45d0-bf55-f1ce03def37b failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673)
at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264)
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291)
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250)
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469)
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101)
at scala.Option.map(Option.scala:146)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121)
at scala.util.Success.$anonfun$map$1(Try.scala:251)
at scala.util.Success.map(Try.scala:209)
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288)
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29)
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:02:51,113 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor WorkflowActor-059afb47-b7a6-45d0-bf55-f1ce03def37b is in a terminal state: WorkflowFailedState
2018-08-11 03:02:51,113 cromwell-system-akka.dispatchers.backend-dispatcher-63 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(989e9d1f)read_file_limits.readFloat:NA:1]: `dd if=/dev/zero of=file_256k bs=256k count=1`
2018-08-11 03:02:51,126 cromwell-system-akka.dispatchers.engine-dispatcher-34 ERROR - WorkflowManagerActor Workflow 80bcbca9-d880-4e50-ad3c-a8353a8efe64 failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673)
at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264)
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291)
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250)
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469)
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101)
at scala.Option.map(Option.scala:146)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121)
at scala.util.Success.$anonfun$map$1(Try.scala:251)
at scala.util.Success.map(Try.scala:209)
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288)
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29)
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:02:51,126 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowManagerActor WorkflowActor-80bcbca9-d880-4e50-ad3c-a8353a8efe64 is in a terminal state: WorkflowFailedState
2018-08-11 03:02:51,132 cromwell-system-akka.dispatchers.api-dispatcher-67 INFO - Unspecified type (Unspecified version) workflow 4c8e6262-97b0-44ce-9c03-88729f6d29b8 submitted
2018-08-11 03:02:51,212 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowExecutionActor-5c60a694-7d57-4f86-ba3a-c22de94c935a [UUID(5c60a694)]: Starting machineTypeTool
2018-08-11 03:02:51,282 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowExecutionActor-f8901107-48c1-427d-a503-d1b399a14673 [UUID(f8901107)]: Starting nested_lookups.throwaway2, nested_lookups.throwaway1
2018-08-11 03:02:51,283 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowExecutionActor-f8901107-48c1-427d-a503-d1b399a14673 [UUID(f8901107)]: Condition met: 'true'. Running conditional section
2018-08-11 03:02:51,285 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowExecutionActor-f8901107-48c1-427d-a503-d1b399a14673 [UUID(f8901107)]: Condition met: 'true'. Running conditional section
2018-08-11 03:02:51,286 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowExecutionActor-f8901107-48c1-427d-a503-d1b399a14673 [UUID(f8901107)]: Condition met: 'true'. Running conditional section
2018-08-11 03:02:51,318 cromwell-system-akka.dispatchers.backend-dispatcher-63 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(4fe7437b)arrays_scatters_ifs.printInt:1:1]: `echo "1" > out.txt`
2018-08-11 03:02:51,371 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowExecutionActor-da0a3242-9e47-4ffc-9b50-da4fe1997414 [UUID(da0a3242)]: Starting globbingindex.glob_task
2018-08-11 03:02:51,419 cromwell-system-akka.dispatchers.api-dispatcher-58 INFO - Unspecified type (Unspecified version) workflow e7ee3d80-1371-462a-b9e4-7f47b3d3e72a submitted
2018-08-11 03:02:51,721 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowExecutionActor-2fb6debd-2af2-4054-8b2f-868061c6c4e9 [UUID(2fb6debd)]: Workflow draft3_infer_version complete. Final Outputs:
{
"draft3_infer_version.j": 660
}
2018-08-11 03:02:51,753 cromwell-system-akka.dispatchers.api-dispatcher-64 INFO - Unspecified type (Unspecified version) workflow ba32f0ef-94ca-47fa-8da2-cfc2b5b36b01 submitted
2018-08-11 03:02:51,759 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - WorkflowExecutionActor-4506a204-53c2-42a1-95d8-0ca23ad2a44e [UUID(4506a204)]: Workflow nested_struct complete. Final Outputs:
{
"nested_struct.f": 5.5
}
2018-08-11 03:02:52,003 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowExecutionActor-86bc228d-cda7-4609-b7fb-c4c4dae25137 [UUID(86bc228d)]: Condition NOT met: 'false'. Bypassing conditional section
2018-08-11 03:02:52,003 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowExecutionActor-86bc228d-cda7-4609-b7fb-c4c4dae25137 [UUID(86bc228d)]: Condition met: 'true'. Running conditional section
2018-08-11 03:02:52,025 cromwell-system-akka.dispatchers.api-dispatcher-64 INFO - Unspecified type (Unspecified version) workflow 20e4ae72-496d-4b38-be24-845cea7aadad submitted
2018-08-11 03:02:52,072 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowExecutionActor-8efa7bd2-6c41-40fc-bdf8-d8a1929c99c0 [UUID(8efa7bd2)]: Starting badExample.bad
2018-08-11 03:02:52,195 cromwell-system-akka.dispatchers.api-dispatcher-64 INFO - Unspecified type (Unspecified version) workflow af95ce90-ac96-4235-8254-98dd5f53878d submitted
2018-08-11 03:02:52,427 cromwell-system-akka.dispatchers.api-dispatcher-64 INFO - Unspecified type (Unspecified version) workflow 3be432f1-c4f3-4e1e-ad60-dbf04d97e1bf submitted
2018-08-11 03:02:52,540 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowExecutionActor-9a862b7e-13d0-4b63-a747-4c17104b4918 [UUID(9a862b7e)]: Starting declarations_as_nodes.t1
2018-08-11 03:02:52,627 cromwell-system-akka.dispatchers.api-dispatcher-66 INFO - Unspecified type (Unspecified version) workflow 7a9803d4-b4f5-45f9-aad9-3193335b7129 submitted
2018-08-11 03:02:52,793 cromwell-system-akka.dispatchers.api-dispatcher-64 INFO - Unspecified type (Unspecified version) workflow 171b1387-b7a4-416d-aa63-86829d8039dd submitted
2018-08-11 03:02:52,835 cromwell-system-akka.dispatchers.backend-dispatcher-43 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(989e9d1f)read_file_limits.readInt:NA:1]: `dd if=/dev/zero of=file_256k bs=256k count=1`
2018-08-11 03:02:52,949 cromwell-system-akka.dispatchers.api-dispatcher-66 INFO - WDL (1.0) workflow 7c349a44-4eca-448d-9a02-114da3e0cd45 submitted
2018-08-11 03:02:53,100 cromwell-system-akka.dispatchers.api-dispatcher-64 INFO - Unspecified type (Unspecified version) workflow cd413a7b-1835-4a8f-87c7-7df351a5c649 submitted
2018-08-11 03:02:53,235 cromwell-system-akka.dispatchers.api-dispatcher-66 INFO - Unspecified type (Unspecified version) workflow b89dd9bd-74c6-4f6e-8487-844be5fb23d9 submitted
2018-08-11 03:02:53,322 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowExecutionActor-f8901107-48c1-427d-a503-d1b399a14673 [UUID(f8901107)]: Condition met: 'true'. Running conditional section
2018-08-11 03:02:53,322 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowExecutionActor-f8901107-48c1-427d-a503-d1b399a14673 [UUID(f8901107)]: Condition NOT met: 'false'. Bypassing conditional section
2018-08-11 03:02:53,322 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowExecutionActor-f8901107-48c1-427d-a503-d1b399a14673 [UUID(f8901107)]: Condition met: 'true'. Running conditional section
- should successfully run final_call_logs_dir_tes !!! IGNORED !!!
2018-08-11 03:02:53,951 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowExecutionActor-5e287608-d4be-4014-b70e-625ea2002073 [UUID(5e287608)]: Starting forkjoin.mkFile
2018-08-11 03:02:54,342 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - WorkflowExecutionActor-f8901107-48c1-427d-a503-d1b399a14673 [UUID(f8901107)]: Starting nested_lookups.needs_wf_input
- should successfully run monitoring_log_papiv1 !!! IGNORED !!!
2018-08-11 03:02:54,831 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowExecutionActor-0bae37d3-2ac8-4d79-b78f-ce91108498d6 [UUID(0bae37d3)]: Condition NOT met: '((x % 2) == 0)'. Bypassing conditional section
2018-08-11 03:02:54,831 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowExecutionActor-0bae37d3-2ac8-4d79-b78f-ce91108498d6 [UUID(0bae37d3)]: Condition met: '((x % 2) == 0)'. Running conditional section
2018-08-11 03:02:55,062 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - WorkflowExecutionActor-86bc228d-cda7-4609-b7fb-c4c4dae25137 [UUID(86bc228d)]: Starting declarations_in_ifs.double_i
2018-08-11 03:02:55,372 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowExecutionActor-f8901107-48c1-427d-a503-d1b399a14673 [UUID(f8901107)]: Starting nested_lookups.m1
- should fail during execution chainfail (45 seconds, 834 milliseconds)
2018-08-11 03:02:55,782 cromwell-system-akka.dispatchers.api-dispatcher-64 INFO - Unspecified type (Unspecified version) workflow 9885fa07-3820-45d9-8d28-a2c9bcd351f6 submitted
2018-08-11 03:02:56,515 cromwell-system-akka.dispatchers.api-dispatcher-68 INFO - Unspecified type (Unspecified version) workflow 6648fdb1-fdf1-4996-82c5-4b8ef24674a7 submitted
- should successfully run draft3_array_indexing (15 seconds, 114 milliseconds)
2018-08-11 03:02:56,859 WARN - Graceful shutdown took too much time, forcing the shutdown.
2018-08-11 03:02:56,860 WARN - 0 tasks failed to execute before shutdown.
2018-08-11 03:02:56,860 ERROR - Test 'successfully run wdl_function_locations' with workflow id '78f788f6-f7be-411b-b507-87d36e8c153b' failed on attempt 1 of 3
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26)
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183)
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181)
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138)
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304)
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125)
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70)
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36)
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93)
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93)
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43)
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44)
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284)
at scala.concurrent.Promise.complete(Promise.scala:49)
at scala.concurrent.Promise.complete$(Promise.scala:48)
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183)
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:02:56,873 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowExecutionActor-0bae37d3-2ac8-4d79-b78f-ce91108498d6 [UUID(0bae37d3)]: Starting draft3_optional_addition.call_me
2018-08-11 03:02:56,878 cromwell-system-akka.dispatchers.api-dispatcher-64 INFO - Unspecified type (Unspecified version) workflow c9359ca2-3b35-46c3-9f8d-69f196f8c234 submitted
2018-08-11 03:02:56,917 WARN - Initiated a temporary lockdown because of exception: {"error":"No JSON data was found"}
2018-08-11 03:02:56,918 ERROR - An exception occurred while sending the event to Sentry.
io.sentry.connection.ConnectionException: {"error":"No JSON data was found"}
at io.sentry.connection.HttpConnection.doSend(HttpConnection.java:216)
at io.sentry.connection.AbstractConnection.send(AbstractConnection.java:76)
at io.sentry.connection.AsyncConnection$EventSubmitter.run(AsyncConnection.java:185)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Caused by: java.net.SocketTimeoutException: connect timed out
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673)
at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264)
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177)
at sun.net.www.protocol.https.HttpsURLConnectionImpl.connect(HttpsURLConnectionImpl.java:153)
at io.sentry.connection.HttpConnection.doSend(HttpConnection.java:168)
... 5 common frames omitted
- should fail during execution circular_dependencies !!! IGNORED !!!
2018-08-11 03:02:58,153 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - 52ea3e89-114f-4aaa-880e-b5651badd13b-SubWorkflowActor-SubWorkflow-ScatterAt11_15:0:1 [UUID(52ea3e89)]: Workflow ScatterAt11_15 complete. Final Outputs:
{
"j": [7, 8, 9]
}
2018-08-11 03:02:58,160 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - 28e53c49-037b-4ad9-a35f-da78fb4b199c-SubWorkflowActor-SubWorkflow-ScatterAt11_15:2:1 [UUID(28e53c49)]: Workflow ScatterAt11_15 complete. Final Outputs:
{
"j": [11, 12, 13]
}
2018-08-11 03:02:58,186 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - 85a05be9-3bdd-4eeb-bf86-4c124160a79d-SubWorkflowActor-SubWorkflow-ScatterAt11_15:2:1 [UUID(85a05be9)]: Workflow ScatterAt11_15 complete. Final Outputs:
{
"j": [13, 14, 15]
}
2018-08-11 03:02:58,186 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - 607e8d7d-6ab4-4ce9-9c6c-028121529ad3-SubWorkflowActor-SubWorkflow-ScatterAt11_15:1:1 [UUID(607e8d7d)]: Workflow ScatterAt11_15 complete. Final Outputs:
{
"j": [7, 8, 9]
}
2018-08-11 03:02:58,186 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - 038d23ba-fc10-4df7-9da0-6dbdcd3e15ab-SubWorkflowActor-SubWorkflow-ScatterAt11_15:1:1 [UUID(038d23ba)]: Workflow ScatterAt11_15 complete. Final Outputs:
{
"j": [11, 12, 13]
}
2018-08-11 03:02:58,186 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - 86325a08-3e5b-49a9-9a6c-e1726b7cd517-SubWorkflowActor-SubWorkflow-ScatterAt11_15:1:1 [UUID(86325a08)]: Workflow ScatterAt11_15 complete. Final Outputs:
{
"j": [9, 10, 11]
}
2018-08-11 03:02:58,186 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - 89842ecc-fd4b-4686-9d76-cc023be4481d-SubWorkflowActor-SubWorkflow-ScatterAt11_15:0:1 [UUID(89842ecc)]: Workflow ScatterAt11_15 complete. Final Outputs:
{
"j": [9, 10, 11]
}
2018-08-11 03:02:58,186 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - 2e0649ca-d1b6-48e3-b9d9-81e2d3430eab-SubWorkflowActor-SubWorkflow-ScatterAt11_15:0:1 [UUID(2e0649ca)]: Workflow ScatterAt11_15 complete. Final Outputs:
{
"j": [5, 6, 7]
}
2018-08-11 03:02:58,186 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - 8f10796f-b7a4-4e8f-973f-ea0368a1d355-SubWorkflowActor-SubWorkflow-ScatterAt11_15:2:1 [UUID(8f10796f)]: Workflow ScatterAt11_15 complete. Final Outputs:
{
"j": [9, 10, 11]
}
- should successfully run refresh_token !!! IGNORED !!!
- should successfully run cwl_resources_papiv1 !!! IGNORED !!!
2018-08-11 03:02:58,911 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowExecutionActor-0bae37d3-2ac8-4d79-b78f-ce91108498d6 [UUID(0bae37d3)]: Starting draft3_optional_addition.call_me
2018-08-11 03:02:59,221 cromwell-system-akka.dispatchers.backend-dispatcher-38 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(989e9d1f)read_file_limits.readObject:NA:1]: `dd if=/dev/zero of=file_256k bs=256k count=1`
- should successfully run workflow_type_and_version_cwl !!! IGNORED !!!
2018-08-11 03:02:59,883 WARN - Graceful shutdown took too much time, forcing the shutdown.
2018-08-11 03:02:59,883 WARN - 0 tasks failed to execute before shutdown.
2018-08-11 03:02:59,883 ERROR - Test 'successfully run non_root_default_user' with workflow id '80bcbca9-d880-4e50-ad3c-a8353a8efe64' failed on attempt 1 of 3
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26)
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183)
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181)
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138)
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304)
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125)
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70)
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36)
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93)
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93)
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43)
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44)
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284)
at scala.concurrent.Promise.complete(Promise.scala:49)
at scala.concurrent.Promise.complete$(Promise.scala:48)
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183)
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:02:59,929 cromwell-system-akka.dispatchers.api-dispatcher-66 INFO - Unspecified type (Unspecified version) workflow 0e656752-aaad-4e45-9121-5b4c13ad7568 submitted
- should successfully run input_from_bucket_with_requester_pays !!! IGNORED !!!
2018-08-11 03:03:00,898 WARN - Initiated a temporary lockdown because of exception: An exception occurred while submitting the event to the Sentry server.
2018-08-11 03:03:00,898 ERROR - An exception occurred while sending the event to Sentry.
io.sentry.connection.ConnectionException: An exception occurred while submitting the event to the Sentry server.
at io.sentry.connection.HttpConnection.doSend(HttpConnection.java:216)
at io.sentry.connection.AbstractConnection.send(AbstractConnection.java:76)
at io.sentry.connection.AsyncConnection$EventSubmitter.run(AsyncConnection.java:185)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Caused by: java.net.SocketTimeoutException: connect timed out
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673)
at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264)
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177)
at sun.net.www.protocol.https.HttpsURLConnectionImpl.connect(HttpsURLConnectionImpl.java:153)
at io.sentry.connection.HttpConnection.doSend(HttpConnection.java:168)
... 5 common frames omitted
2018-08-11 03:03:02,608 ERROR - Test 'successfully run draft3_optional_declarations' with workflow id '059afb47-b7a6-45d0-bf55-f1ce03def37b' failed on attempt 1 of 3
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26)
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183)
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181)
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138)
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304)
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125)
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70)
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36)
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93)
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93)
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43)
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44)
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284)
at scala.concurrent.Promise.complete(Promise.scala:49)
at scala.concurrent.Promise.complete$(Promise.scala:48)
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183)
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:03:02,643 cromwell-system-akka.dispatchers.api-dispatcher-58 INFO - WDL (1.0) workflow 12075b5a-0b94-4d41-9c8d-a7296ca9c123 submitted
2018-08-11 03:03:04,285 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - 54a73c35-fde6-46ee-ba2a-1a6e61759a26-SubWorkflowActor-SubWorkflow-ScatterAt14_15:0:1 [UUID(54a73c35)]: Workflow ScatterAt14_15 complete. Final Outputs:
{
"k": [62, 63, 64]
}
2018-08-11 03:03:04,285 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - d325858e-f656-486f-a2f2-4c0e0cb75c14-SubWorkflowActor-SubWorkflow-ScatterAt14_15:2:1 [UUID(d325858e)]: Workflow ScatterAt14_15 complete. Final Outputs:
{
"k": [66, 67, 68]
}
2018-08-11 03:03:04,290 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - 5871a901-f2a3-4563-bd73-ceebfecc97f7-SubWorkflowActor-SubWorkflow-ScatterAt14_15:1:1 [UUID(5871a901)]: Workflow ScatterAt14_15 complete. Final Outputs:
{
"k": [66, 67, 68]
}
2018-08-11 03:03:04,291 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - ccf00a0a-7acc-4ee2-bb93-cd9141e756c3-SubWorkflowActor-SubWorkflow-ScatterAt14_15:0:1 [UUID(ccf00a0a)]: Workflow ScatterAt14_15 complete. Final Outputs:
{
"k": [64, 65, 66]
}
2018-08-11 03:03:04,291 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - 28aa9308-2afa-4118-bb40-5baaac1ce7ef-SubWorkflowActor-SubWorkflow-ScatterAt14_15:0:1 [UUID(28aa9308)]: Workflow ScatterAt14_15 complete. Final Outputs:
{
"k": [60, 61, 62]
}
2018-08-11 03:03:04,292 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - 75bd06c3-09c6-4399-b886-d8e75ba485ba-SubWorkflowActor-SubWorkflow-ScatterAt14_15:2:1 [UUID(75bd06c3)]: Workflow ScatterAt14_15 complete. Final Outputs:
{
"k": [68, 69, 70]
}
2018-08-11 03:03:04,294 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - b0aee6d8-8ad7-4ac1-8499-09f4a7fdc8f2-SubWorkflowActor-SubWorkflow-ScatterAt14_15:2:1 [UUID(b0aee6d8)]: Workflow ScatterAt14_15 complete. Final Outputs:
{
"k": [64, 65, 66]
}
2018-08-11 03:03:04,300 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - e4f7f582-e138-44fa-8264-e79b1357fcfc-SubWorkflowActor-SubWorkflow-ScatterAt14_15:1:1 [UUID(e4f7f582)]: Workflow ScatterAt14_15 complete. Final Outputs:
{
"k": [62, 63, 64]
}
2018-08-11 03:03:04,304 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - e46fd8cc-9399-4391-8c24-a94a4ae18bb3-SubWorkflowActor-SubWorkflow-ScatterAt14_15:1:1 [UUID(e46fd8cc)]: Workflow ScatterAt14_15 complete. Final Outputs:
{
"k": [64, 65, 66]
}
2018-08-11 03:03:04,822 cromwell-system-akka.dispatchers.api-dispatcher-67 INFO - WDL (1.0) workflow 03623b51-49d1-4dd1-a156-75c8afdb3ba3 submitted
2018-08-11 03:03:05,631 cromwell-system-akka.dispatchers.backend-dispatcher-42 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(ec4559df)docker_hash_gcr.gcr:NA:1]: `echo "hello"`
2018-08-11 03:03:05,636 cromwell-system-akka.dispatchers.backend-dispatcher-42 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(1073fc07)scattergather.prepare:NA:1]: `python3 -c "print('one\ntwo\nthree\nfour')"`
Aug 11, 2018 3:03:06 AM com.google.api.client.http.HttpRequest execute
WARNING: exception thrown while executing request
java.net.SocketTimeoutException: connect timed out
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673)
at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264)
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291)
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250)
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981)
at com.google.auth.oauth2.ServiceAccountCredentials.refreshAccessToken(ServiceAccountCredentials.java:378)
at com.google.auth.oauth2.OAuth2Credentials.refresh(OAuth2Credentials.java:160)
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode.$anonfun$credentialValidation$1(GoogleAuthMode.scala:112)
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode.$anonfun$credentialValidation$1$adapted(GoogleAuthMode.scala:112)
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode.$anonfun$validateCredential$1(GoogleAuthMode.scala:115)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.util.Try$.apply(Try.scala:209)
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode.validateCredential(GoogleAuthMode.scala:115)
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode.validateCredential$(GoogleAuthMode.scala:114)
at cromwell.cloudsupport.gcp.auth.ServiceAccountMode.validateCredential(GoogleAuthMode.scala:150)
at cromwell.cloudsupport.gcp.auth.ServiceAccountMode._credential$lzycompute(GoogleAuthMode.scala:169)
at cromwell.cloudsupport.gcp.auth.ServiceAccountMode._credential(GoogleAuthMode.scala:158)
at cromwell.cloudsupport.gcp.auth.ServiceAccountMode.credential(GoogleAuthMode.scala:172)
at cromwell.filesystems.gcs.GoogleUtil$EnhancedGoogleAuthMode$.credential$1(GoogleUtil.scala:33)
at cromwell.filesystems.gcs.GoogleUtil$EnhancedGoogleAuthMode$.$anonfun$retryCredential$4(GoogleUtil.scala:49)
at scala.concurrent.Future$.$anonfun$apply$1(Future.scala:654)
at scala.util.Success.$anonfun$map$1(Try.scala:251)
at scala.util.Success.map(Try.scala:209)
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288)
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29)
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:03:06,269 cromwell-system-akka.dispatchers.engine-dispatcher-32 ERROR - WorkflowManagerActor Workflow 18d037d0-63d7-4ff3-a7c1-4dbdc20ce058 failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673)
at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264)
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291)
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250)
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981)
at com.google.api.client.auth.oauth2.TokenRequest.executeUnparsed(TokenRequest.java:283)
at com.google.api.client.auth.oauth2.TokenRequest.execute(TokenRequest.java:307)
at com.google.api.client.googleapis.auth.oauth2.GoogleCredential.executeRefreshToken(GoogleCredential.java:394)
at com.google.api.client.auth.oauth2.Credential.refreshToken(Credential.java:489)
at com.google.api.client.auth.oauth2.Credential.intercept(Credential.java:217)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:868)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469)
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101)
at scala.Option.map(Option.scala:146)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121)
at scala.util.Success.$anonfun$map$1(Try.scala:251)
at scala.util.Success.map(Try.scala:209)
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288)
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29)
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:03:06,270 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - WorkflowManagerActor WorkflowActor-18d037d0-63d7-4ff3-a7c1-4dbdc20ce058 is in a terminal state: WorkflowFailedState
2018-08-11 03:03:06,289 cromwell-system-akka.dispatchers.backend-dispatcher-37 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(989e9d1f)read_file_limits.readObjects:NA:1]: `dd if=/dev/zero of=file_256k bs=256k count=1`
2018-08-11 03:03:06,305 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - 5ec5953e-6a4a-4f16-8707-50194d466197-SubWorkflowActor-SubWorkflow-ScatterAt9_13:2:1 [UUID(5ec5953e)]: Workflow ScatterAt9_13 complete. Final Outputs:
{
"k": [[64, 65, 66], [66, 67, 68], [68, 69, 70]],
"x": [4, 5, 6],
"j": [[9, 10, 11], [11, 12, 13], [13, 14, 15]]
}
2018-08-11 03:03:06,322 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - 542b8489-37bb-45ff-aa01-331594fd3218-SubWorkflowActor-SubWorkflow-ScatterAt9_13:0:1 [UUID(542b8489)]: Workflow ScatterAt9_13 complete. Final Outputs:
{
"x": [2, 3, 4],
"j": [[5, 6, 7], [7, 8, 9], [9, 10, 11]],
"k": [[60, 61, 62], [62, 63, 64], [64, 65, 66]]
}
2018-08-11 03:03:06,324 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - 356b1bc7-9dba-40b4-bd4a-7c3f8780d924-SubWorkflowActor-SubWorkflow-ScatterAt9_13:1:1 [UUID(356b1bc7)]: Workflow ScatterAt9_13 complete. Final Outputs:
{
"x": [3, 4, 5],
"j": [[7, 8, 9], [9, 10, 11], [11, 12, 13]],
"k": [[62, 63, 64], [64, 65, 66], [66, 67, 68]]
}
- should successfully run draft3_struct_output (15 seconds, 128 milliseconds)
2018-08-11 03:03:07,273 cromwell-system-akka.dispatchers.backend-dispatcher-41 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(989e9d1f)read_file_limits.readMap:NA:1]: `dd if=/dev/zero of=file_256k bs=256k count=1`
2018-08-11 03:03:07,356 cromwell-system-akka.dispatchers.api-dispatcher-66 INFO - CWL (v1.0) workflow f2920645-5e3b-4310-825c-50f1225cf9b7 submitted
…2018-08-11 03:03:09,344 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowExecutionActor-5f61c4de-3e98-4c84-92e2-559be38bc189 [UUID(5f61c4de)]: Workflow nested_scatter complete. Final Outputs:
{
"nested_scatter.strings_in_if_in_scatter": [null, "hello 2", "hello 3"],
"nested_scatter.ks": [[[60, 61, 62], [62, 63, 64], [64, 65, 66]], [[62, 63, 64], [64, 65, 66], [66, 67, 68]], [[64, 65, 66], [66, 67, 68], [68, 69, 70]]]
}
Metadata mismatch for 18d037d0-63d7-4ff3-a7c1-4dbdc20ce058 - retrying
Metadata mismatch for 18d037d0-63d7-4ff3-a7c1-4dbdc20ce058 - retrying
2018-08-11 03:03:13,003 cromwell-system-akka.dispatchers.backend-dispatcher-39 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(989e9d1f)read_file_limits.readTsv:NA:1]: `dd if=/dev/zero of=file_256k bs=256k count=1`
2018-08-11 03:03:13,013 cromwell-system-akka.dispatchers.backend-dispatcher-70 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(989e9d1f)read_file_limits.readLines:NA:1]: `dd if=/dev/zero of=file_256k bs=256k count=1`
2018-08-11 03:03:13,016 cromwell-system-akka.dispatchers.backend-dispatcher-71 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(989e9d1f)read_file_limits.readJson:NA:1]: `dd if=/dev/zero of=file_256k bs=256k count=1`
2018-08-11 03:03:13,035 cromwell-system-akka.dispatchers.engine-dispatcher-30 ERROR - WorkflowManagerActor Workflow 78e47c58-72a5-4b86-94ac-c9cb17b39ae3 failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673)
at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264)
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291)
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250)
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469)
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101)
at scala.Option.map(Option.scala:146)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121)
at scala.util.Success.$anonfun$map$1(Try.scala:251)
at scala.util.Success.map(Try.scala:209)
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288)
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29)
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:03:13,035 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor WorkflowActor-78e47c58-72a5-4b86-94ac-c9cb17b39ae3 is in a terminal state: WorkflowFailedState
2018-08-11 03:03:13,053 cromwell-system-akka.dispatchers.backend-dispatcher-72 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(8610dbc7)wf_hello.hello:NA:1]: `echo "Hello " > test.out
echo "Hello " > array.out
echo "Hello " > map.out
echo "Hello " > left.out
echo "Hello " > right.out`
2018-08-11 03:03:13,055 cromwell-system-akka.dispatchers.engine-dispatcher-30 ERROR - WorkflowManagerActor Workflow 4e18e509-c682-4276-9543-e1ea9f7a58dc failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673)
at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264)
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291)
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250)
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981)
at com.google.api.client.auth.oauth2.TokenRequest.executeUnparsed(TokenRequest.java:283)
at com.google.api.client.auth.oauth2.TokenRequest.execute(TokenRequest.java:307)
at com.google.api.client.googleapis.auth.oauth2.GoogleCredential.executeRefreshToken(GoogleCredential.java:394)
at com.google.api.client.auth.oauth2.Credential.refreshToken(Credential.java:489)
at com.google.api.client.auth.oauth2.Credential.intercept(Credential.java:217)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:868)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469)
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101)
at scala.Option.map(Option.scala:146)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121)
at scala.util.Success.$anonfun$map$1(Try.scala:251)
at scala.util.Success.map(Try.scala:209)
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288)
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29)
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:03:13,058 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor WorkflowActor-4e18e509-c682-4276-9543-e1ea9f7a58dc is in a terminal state: WorkflowFailedState
2018-08-11 03:03:13,139 cromwell-system-akka.dispatchers.backend-dispatcher-72 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(4fe7437b)arrays_scatters_ifs.printInt:0:1]: `echo "0" > out.txt`
2018-08-11 03:03:13,197 cromwell-system-akka.dispatchers.backend-dispatcher-73 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(3605344c)requester_pays_localization.localize:NA:1]: `cat "/cromwell_root/cromwell_bucket_with_requester_pays/lorem ipsum.txt" > out.txt`
2018-08-11 03:03:13,225 cromwell-system-akka.dispatchers.backend-dispatcher-74 WARN - Local [UUID(8afdcac0)]: Key/s [backend] is/are not supported by backend. Unsupported attributes will not be part of job executions.
2018-08-11 03:03:13,912 cromwell-system-akka.dispatchers.engine-dispatcher-33 ERROR - WorkflowManagerActor Workflow 80b836dc-2a63-49dd-86ee-b065c6e08cf0 failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673)
at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264)
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291)
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250)
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981)
at com.google.api.client.auth.oauth2.TokenRequest.executeUnparsed(TokenRequest.java:283)
at com.google.api.client.auth.oauth2.TokenRequest.execute(TokenRequest.java:307)
at com.google.api.client.googleapis.auth.oauth2.GoogleCredential.executeRefreshToken(GoogleCredential.java:394)
at com.google.api.client.auth.oauth2.Credential.refreshToken(Credential.java:489)
at com.google.api.client.auth.oauth2.Credential.intercept(Credential.java:217)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:868)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469)
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101)
at scala.Option.map(Option.scala:146)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121)
at scala.util.Success.$anonfun$map$1(Try.scala:251)
at scala.util.Success.map(Try.scala:209)
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288)
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29)
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:03:13,916 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowManagerActor WorkflowActor-80b836dc-2a63-49dd-86ee-b065c6e08cf0 is in a terminal state: WorkflowFailedState
2018-08-11 03:03:13,923 cromwell-system-akka.dispatchers.backend-dispatcher-74 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(23085617)simple_if.runMeTrue:NA:1]: `echo "done"`
2018-08-11 03:03:13,943 cromwell-system-akka.dispatchers.engine-dispatcher-33 ERROR - WorkflowManagerActor Workflow 88a6fda1-fa5d-456b-8ebd-057a921d230e failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673)
at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264)
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291)
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250)
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981)
at com.google.api.client.auth.oauth2.TokenRequest.executeUnparsed(TokenRequest.java:283)
at com.google.api.client.auth.oauth2.TokenRequest.execute(TokenRequest.java:307)
at com.google.api.client.googleapis.auth.oauth2.GoogleCredential.executeRefreshToken(GoogleCredential.java:394)
at com.google.api.client.auth.oauth2.Credential.refreshToken(Credential.java:489)
at com.google.api.client.auth.oauth2.Credential.intercept(Credential.java:217)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:868)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469)
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101)
at scala.Option.map(Option.scala:146)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121)
at scala.util.Success.$anonfun$map$1(Try.scala:251)
at scala.util.Success.map(Try.scala:209)
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288)
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29)
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:03:13,944 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowManagerActor WorkflowActor-88a6fda1-fa5d-456b-8ebd-057a921d230e is in a terminal state: WorkflowFailedState
2018-08-11 03:03:13,952 cromwell-system-akka.dispatchers.backend-dispatcher-75 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(989e9d1f)read_file_limits.readString:NA:1]: `dd if=/dev/zero of=file_256k bs=256k count=1`
2018-08-11 03:03:13,979 cromwell-system-akka.dispatchers.backend-dispatcher-76 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(989e9d1f)read_file_limits.readBoolean:NA:1]: `dd if=/dev/zero of=file_256k bs=256k count=1`
2018-08-11 03:03:14,197 cromwell-system-akka.dispatchers.backend-dispatcher-77 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(b60dbf01)draft3_nio_file.mk_more_files:NA:1]: `echo "f1" > f
echo "h1" > h
echo "x01" > x0
echo "x11" > x1
echo "y01" > y0
echo "y11" > y1`
2018-08-11 03:03:14,237 cromwell-system-akka.dispatchers.engine-dispatcher-6 ERROR - WorkflowManagerActor Workflow 88801cb6-a7aa-44a3-94ac-55a8c5dc39aa failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673)
at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264)
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291)
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250)
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469)
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101)
at scala.Option.map(Option.scala:146)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121)
at scala.util.Success.$anonfun$map$1(Try.scala:251)
at scala.util.Success.map(Try.scala:209)
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288)
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29)
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:03:14,238 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor WorkflowActor-88801cb6-a7aa-44a3-94ac-55a8c5dc39aa is in a terminal state: WorkflowFailedState
2018-08-11 03:03:14,240 cromwell-system-akka.dispatchers.backend-dispatcher-77 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(b60dbf01)draft3_nio_file.mk_files:NA:1]: `echo "f0" > f
echo "h0" > h
echo "x00" > x0
echo "x10" > x1
echo "y00" > y0
echo "y10" > y1`
2018-08-11 03:03:14,418 cromwell-system-akka.dispatchers.engine-dispatcher-30 ERROR - WorkflowManagerActor Workflow d3618ad6-432e-4dac-963e-541cb77de944 failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673)
at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264)
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291)
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250)
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469)
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101)
at scala.Option.map(Option.scala:146)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121)
at scala.util.Success.$anonfun$map$1(Try.scala:251)
at scala.util.Success.map(Try.scala:209)
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288)
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29)
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:03:14,419 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor WorkflowActor-d3618ad6-432e-4dac-963e-541cb77de944 is in a terminal state: WorkflowFailedState
2018-08-11 03:03:14,429 cromwell-system-akka.dispatchers.engine-dispatcher-32 ERROR - WorkflowManagerActor Workflow 1649355b-fec9-427b-b442-9f30b829b457 failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673)
at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264)
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291)
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250)
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981)
at com.google.api.client.auth.oauth2.TokenRequest.executeUnparsed(TokenRequest.java:283)
at com.google.api.client.auth.oauth2.TokenRequest.execute(TokenRequest.java:307)
at com.google.api.client.googleapis.auth.oauth2.GoogleCredential.executeRefreshToken(GoogleCredential.java:394)
at com.google.api.client.auth.oauth2.Credential.refreshToken(Credential.java:489)
at com.google.api.client.auth.oauth2.Credential.intercept(Credential.java:217)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:868)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469)
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101)
at scala.Option.map(Option.scala:146)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121)
at scala.util.Success.$anonfun$map$1(Try.scala:251)
at scala.util.Success.map(Try.scala:209)
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288)
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29)
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:03:14,429 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - WorkflowManagerActor WorkflowActor-1649355b-fec9-427b-b442-9f30b829b457 is in a terminal state: WorkflowFailedState
2018-08-11 03:03:14,435 cromwell-system-akka.dispatchers.engine-dispatcher-6 ERROR - WorkflowManagerActor Workflow 5040d120-3eb9-4c03-af9c-1b950c866c55 failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673)
at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264)
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291)
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250)
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981)
at com.google.api.client.auth.oauth2.TokenRequest.executeUnparsed(TokenRequest.java:283)
at com.google.api.client.auth.oauth2.TokenRequest.execute(TokenRequest.java:307)
at com.google.api.client.googleapis.auth.oauth2.GoogleCredential.executeRefreshToken(GoogleCredential.java:394)
at com.google.api.client.auth.oauth2.Credential.refreshToken(Credential.java:489)
at com.google.api.client.auth.oauth2.Credential.intercept(Credential.java:217)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:868)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469)
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101)
at scala.Option.map(Option.scala:146)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121)
at scala.util.Success.$anonfun$map$1(Try.scala:251)
at scala.util.Success.map(Try.scala:209)
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288)
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29)
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:03:14,438 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor WorkflowActor-5040d120-3eb9-4c03-af9c-1b950c866c55 is in a terminal state: WorkflowFailedState
2018-08-11 03:03:14,788 cromwell-system-akka.dispatchers.backend-dispatcher-78 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(819450a6)length.lens:NA:1]: job id: projects/broad-dsde-cromwell-dev/operations/2323117015046795106
2018-08-11 03:03:14,789 cromwell-system-akka.dispatchers.backend-dispatcher-78 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(6de9f48d)restart_while_failing.B:NA:1]: job id: projects/broad-dsde-cromwell-dev/operations/7749985327767873962
2018-08-11 03:03:14,789 cromwell-system-akka.dispatchers.backend-dispatcher-78 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(bfe074e7)draft3_read_file_limits.readObject:NA:1]: job id: projects/broad-dsde-cromwell-dev/operations/16366677853240197533
2018-08-11 03:03:14,789 cromwell-system-akka.dispatchers.backend-dispatcher-78 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(bfe074e7)draft3_read_file_limits.readObjects:NA:1]: job id: projects/broad-dsde-cromwell-dev/operations/17634617218353971958
2018-08-11 03:03:14,789 cromwell-system-akka.dispatchers.backend-dispatcher-78 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(bfe074e7)draft3_read_file_limits.readLines:NA:1]: job id: projects/broad-dsde-cromwell-dev/operations/6847339217058538290
2018-08-11 03:03:14,789 cromwell-system-akka.dispatchers.backend-dispatcher-78 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(6de9f48d)restart_while_failing.A:NA:1]: job id: projects/broad-dsde-cromwell-dev/operations/12792575911540457082
2018-08-11 03:03:14,790 cromwell-system-akka.dispatchers.backend-dispatcher-78 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(6de9f48d)restart_while_failing.sleep_exit:3:1]: job id: projects/broad-dsde-cromwell-dev/operations/7954629919722642460
2018-08-11 03:03:14,790 cromwell-system-akka.dispatchers.backend-dispatcher-78 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(bfe074e7)draft3_read_file_limits.readString:NA:1]: job id: projects/broad-dsde-cromwell-dev/operations/17500553026403664309
2018-08-11 03:03:14,790 cromwell-system-akka.dispatchers.backend-dispatcher-78 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(bfe074e7)draft3_read_file_limits.readMap:NA:1]: job id: projects/broad-dsde-cromwell-dev/operations/1715228930686435600
2018-08-11 03:03:14,790 cromwell-system-akka.dispatchers.backend-dispatcher-78 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(6de9f48d)restart_while_failing.sleep_exit:2:1]: job id: projects/broad-dsde-cromwell-dev/operations/6434396342822686685
2018-08-11 03:03:14,790 cromwell-system-akka.dispatchers.backend-dispatcher-78 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(bfe074e7)draft3_read_file_limits.readJson:NA:1]: job id: projects/broad-dsde-cromwell-dev/operations/16187183263758846125
2018-08-11 03:03:14,790 cromwell-system-akka.dispatchers.backend-dispatcher-78 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(bfe074e7)draft3_read_file_limits.readTsv:NA:1]: job id: projects/broad-dsde-cromwell-dev/operations/9470179827111088689
2018-08-11 03:03:14,791 cromwell-system-akka.dispatchers.backend-dispatcher-78 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(bfe074e7)draft3_read_file_limits.readBoolean:NA:1]: job id: projects/broad-dsde-cromwell-dev/operations/3247760554571008785
2018-08-11 03:03:14,791 cromwell-system-akka.dispatchers.backend-dispatcher-78 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(bfe074e7)draft3_read_file_limits.readFloat:NA:1]: job id: projects/broad-dsde-cromwell-dev/operations/9485286380334209562
2018-08-11 03:03:14,791 cromwell-system-akka.dispatchers.backend-dispatcher-78 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(6de9f48d)restart_while_failing.sleep_exit:4:1]: job id: projects/broad-dsde-cromwell-dev/operations/17136297073419861849
2018-08-11 03:03:14,791 cromwell-system-akka.dispatchers.backend-dispatcher-78 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(6de9f48d)restart_while_failing.sleep_exit:1:1]: job id: projects/broad-dsde-cromwell-dev/operations/1686947474927712373
2018-08-11 03:03:14,792 cromwell-system-akka.dispatchers.backend-dispatcher-78 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(6de9f48d)restart_while_failing.sleep_exit:0:1]: job id: projects/broad-dsde-cromwell-dev/operations/7185019787516367886
2018-08-11 03:03:14,792 cromwell-system-akka.dispatchers.backend-dispatcher-78 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(bfe074e7)draft3_read_file_limits.readInt:NA:1]: job id: projects/broad-dsde-cromwell-dev/operations/15824158814299951924
2018-08-11 03:03:14,830 cromwell-system-akka.dispatchers.backend-dispatcher-78 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(c09bd460)filearrayoutput.createFileArray:NA:1]: job id: projects/broad-dsde-cromwell-dev/operations/7661581386736703595
2018-08-11 03:03:14,831 cromwell-system-akka.dispatchers.backend-dispatcher-78 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(45af4273)ifs_in_scatters.init:NA:1]: job id: projects/broad-dsde-cromwell-dev/operations/13451082472147865103
2018-08-11 03:03:14,833 cromwell-system-akka.dispatchers.backend-dispatcher-78 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(45af4273)ifs_in_scatters.validate_int:1:1]: job id: projects/broad-dsde-cromwell-dev/operations/7122565360595063624
2018-08-11 03:03:14,833 cromwell-system-akka.dispatchers.backend-dispatcher-78 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(45af4273)ifs_in_scatters.validate_int:2:1]: job id: projects/broad-dsde-cromwell-dev/operations/17228939490472717699
Metadata mismatch for 18d037d0-63d7-4ff3-a7c1-4dbdc20ce058 - retrying
2018-08-11 03:03:16,220 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowExecutionActor-29014d92-e9bf-4cf3-895e-7b6da6733b7f [UUID(29014d92)]: Starting multplesourcedarray.source2, multplesourcedarray.source1, multplesourcedarray.source6, multplesourcedarray.source3, multplesourcedarray.source7, multplesourcedarray.source4, multplesourcedarray.source5
- should fail during execution invalid_runtime_attributes (26 seconds, 524 milliseconds)
Metadata mismatch for 18d037d0-63d7-4ff3-a7c1-4dbdc20ce058 - retrying
Metadata mismatch for 18d037d0-63d7-4ff3-a7c1-4dbdc20ce058 - retrying
2018-08-11 03:03:19,817 WARN - Graceful shutdown took too much time, forcing the shutdown.
2018-08-11 03:03:19,818 WARN - 0 tasks failed to execute before shutdown.
2018-08-11 03:03:19,818 ERROR - Test 'successfully run expression_lib_cwl' with workflow id '80b836dc-2a63-49dd-86ee-b065c6e08cf0' failed on attempt 1 of 3
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26)
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183)
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181)
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138)
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304)
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125)
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70)
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36)
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93)
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93)
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43)
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44)
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284)
at scala.concurrent.Promise.complete(Promise.scala:49)
at scala.concurrent.Promise.complete$(Promise.scala:48)
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183)
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:03:19,823 WARN - Graceful shutdown took too much time, forcing the shutdown.
2018-08-11 03:03:19,825 WARN - 0 tasks failed to execute before shutdown.
2018-08-11 03:03:19,826 ERROR - Test 'successfully run input_mirror' with workflow id '1649355b-fec9-427b-b442-9f30b829b457' failed on attempt 1 of 3
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26)
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183)
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181)
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138)
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304)
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125)
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70)
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36)
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93)
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93)
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43)
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44)
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284)
at scala.concurrent.Promise.complete(Promise.scala:49)
at scala.concurrent.Promise.complete$(Promise.scala:48)
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183)
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:03:19,853 cromwell-system-akka.dispatchers.api-dispatcher-67 INFO - Unspecified type (Unspecified version) workflow ec50b955-8811-4810-ba70-f44000e9704c submitted
2018-08-11 03:03:19,853 cromwell-system-akka.dispatchers.api-dispatcher-67 INFO - CWL (v1.0) workflow 7956ba9d-3aa5-4817-bbbc-87615e22e697 submitted
2018-08-11 03:03:20,005 WARN - Initiated a temporary lockdown because of exception: {"error":"No JSON data was found"}
2018-08-11 03:03:20,005 ERROR - An exception occurred while sending the event to Sentry.
io.sentry.connection.ConnectionException: {"error":"No JSON data was found"}
at io.sentry.connection.HttpConnection.doSend(HttpConnection.java:216)
at io.sentry.connection.AbstractConnection.send(AbstractConnection.java:76)
at io.sentry.connection.AsyncConnection$EventSubmitter.run(AsyncConnection.java:185)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Caused by: java.net.SocketTimeoutException: connect timed out
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673)
at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264)
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177)
at sun.net.www.protocol.https.HttpsURLConnectionImpl.connect(HttpsURLConnectionImpl.java:153)
at io.sentry.connection.HttpConnection.doSend(HttpConnection.java:168)
... 5 common frames omitted
2018-08-11 03:03:20,009 WARN - Initiated a temporary lockdown because of exception: {"error":"No JSON data was found"}
2018-08-11 03:03:20,009 ERROR - An exception occurred while sending the event to Sentry.
io.sentry.connection.ConnectionException: {"error":"No JSON data was found"}
at io.sentry.connection.HttpConnection.doSend(HttpConnection.java:216)
at io.sentry.connection.AbstractConnection.send(AbstractConnection.java:76)
at io.sentry.connection.AsyncConnection$EventSubmitter.run(AsyncConnection.java:185)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Caused by: java.net.SocketTimeoutException: connect timed out
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673)
at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264)
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177)
at sun.net.www.protocol.https.HttpsURLConnectionImpl.connect(HttpsURLConnectionImpl.java:153)
at io.sentry.connection.HttpConnection.doSend(HttpConnection.java:168)
... 5 common frames omitted
2018-08-11 03:03:20,341 ERROR - Test 'successfully run draft3_omitting_outputs' with workflow id '78e47c58-72a5-4b86-94ac-c9cb17b39ae3' failed on attempt 1 of 3
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26)
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183)
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181)
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138)
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304)
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125)
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70)
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36)
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93)
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93)
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43)
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44)
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284)
at scala.concurrent.Promise.complete(Promise.scala:49)
at scala.concurrent.Promise.complete$(Promise.scala:48)
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183)
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:03:20,405 cromwell-system-akka.dispatchers.api-dispatcher-65 INFO - WDL (1.0) workflow 6dff21b8-2de9-4cd4-94a7-3217ea2dade1 submitted
2018-08-11 03:03:20,547 ERROR - Test 'successfully run member_access' with workflow id '88801cb6-a7aa-44a3-94ac-55a8c5dc39aa' failed on attempt 1 of 3
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26)
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183)
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181)
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138)
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304)
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125)
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70)
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36)
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93)
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93)
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43)
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44)
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284)
at scala.concurrent.Promise.complete(Promise.scala:49)
at scala.concurrent.Promise.complete$(Promise.scala:48)
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183)
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:03:20,566 cromwell-system-akka.dispatchers.api-dispatcher-65 INFO - Unspecified type (Unspecified version) workflow 1522d1c5-a39b-4ad6-a2a2-4291d4b968e1 submitted
- should fail to submit invalid_inputs_json (20 seconds, 394 milliseconds)
Metadata mismatch for 18d037d0-63d7-4ff3-a7c1-4dbdc20ce058 - retrying
2018-08-11 03:03:22,380 ERROR - Test 'successfully run variable_scoping' with workflow id '4e18e509-c682-4276-9543-e1ea9f7a58dc' failed on attempt 1 of 3
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26)
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183)
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181)
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138)
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304)
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125)
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70)
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36)
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93)
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93)
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43)
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44)
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284)
at scala.concurrent.Promise.complete(Promise.scala:49)
at scala.concurrent.Promise.complete$(Promise.scala:48)
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183)
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:03:22,411 cromwell-system-akka.dispatchers.api-dispatcher-65 INFO - Unspecified type (Unspecified version) workflow e156075b-3665-4f74-a3d6-0e5b0a2c7c14 submitted
2018-08-11 03:03:22,903 ERROR - Test 'successfully run iwdr_input_string_function' with workflow id 'd3618ad6-432e-4dac-963e-541cb77de944' failed on attempt 1 of 3
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26)
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183)
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181)
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138)
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304)
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125)
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70)
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36)
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93)
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93)
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43)
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44)
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284)
at scala.concurrent.Promise.complete(Promise.scala:49)
at scala.concurrent.Promise.complete$(Promise.scala:48)
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183)
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
Metadata mismatch for 18d037d0-63d7-4ff3-a7c1-4dbdc20ce058 - retrying
2018-08-11 03:03:22,931 cromwell-system-akka.dispatchers.api-dispatcher-67 INFO - CWL (v1.0) workflow 349a0c37-10db-40da-9337-b26ba7d3773a submitted
2018-08-11 03:03:23,349 WARN - Graceful shutdown took too much time, forcing the shutdown.
2018-08-11 03:03:23,349 WARN - 0 tasks failed to execute before shutdown.
2018-08-11 03:03:23,349 ERROR - Test 'successfully run read_write_json' with workflow id '88a6fda1-fa5d-456b-8ebd-057a921d230e' failed on attempt 1 of 3
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26)
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183)
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181)
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138)
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304)
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125)
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70)
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36)
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93)
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93)
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43)
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44)
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284)
at scala.concurrent.Promise.complete(Promise.scala:49)
at scala.concurrent.Promise.complete$(Promise.scala:48)
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183)
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:03:23,387 WARN - Initiated a temporary lockdown because of exception: {"error":"No JSON data was found"}
2018-08-11 03:03:23,388 ERROR - An exception occurred while sending the event to Sentry.
io.sentry.connection.ConnectionException: {"error":"No JSON data was found"}
at io.sentry.connection.HttpConnection.doSend(HttpConnection.java:216)
at io.sentry.connection.AbstractConnection.send(AbstractConnection.java:76)
at io.sentry.connection.AsyncConnection$EventSubmitter.run(AsyncConnection.java:185)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Caused by: java.net.SocketTimeoutException: connect timed out
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673)
at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264)
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177)
at sun.net.www.protocol.https.HttpsURLConnectionImpl.connect(HttpsURLConnectionImpl.java:153)
at io.sentry.connection.HttpConnection.doSend(HttpConnection.java:168)
... 5 common frames omitted
2018-08-11 03:03:23,441 cromwell-system-akka.dispatchers.api-dispatcher-65 INFO - Unspecified type (Unspecified version) workflow 36f3b181-a6ca-4bba-8122-5921681f9c30 submitted
- should successfully run square (15 seconds, 81 milliseconds)
Metadata mismatch for 18d037d0-63d7-4ff3-a7c1-4dbdc20ce058 - retrying
2018-08-11 03:03:26,080 ERROR - Test 'successfully run declarations' with workflow id '5040d120-3eb9-4c03-af9c-1b950c866c55' failed on attempt 1 of 3
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26)
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183)
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181)
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138)
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304)
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125)
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70)
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36)
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93)
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93)
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43)
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44)
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284)
at scala.concurrent.Promise.complete(Promise.scala:49)
at scala.concurrent.Promise.complete$(Promise.scala:48)
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183)
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:03:26,105 cromwell-system-akka.dispatchers.api-dispatcher-65 INFO - Unspecified type (Unspecified version) workflow 4f46f274-d37a-4080-b792-f7c7d1e4ec38 submitted
Metadata mismatch for 18d037d0-63d7-4ff3-a7c1-4dbdc20ce058 - retrying
Metadata mismatch for 18d037d0-63d7-4ff3-a7c1-4dbdc20ce058 - retrying
Metadata mismatch for 18d037d0-63d7-4ff3-a7c1-4dbdc20ce058 - retrying
2018-08-11 03:03:31,380 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - 26 new workflows fetched
2018-08-11 03:03:31,381 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(4c8e6262-97b0-44ce-9c03-88729f6d29b8)
2018-08-11 03:03:31,381 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-4c8e6262-97b0-44ce-9c03-88729f6d29b8
2018-08-11 03:03:31,381 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(e7ee3d80-1371-462a-b9e4-7f47b3d3e72a)
2018-08-11 03:03:31,401 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-e7ee3d80-1371-462a-b9e4-7f47b3d3e72a
2018-08-11 03:03:31,401 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(ba32f0ef-94ca-47fa-8da2-cfc2b5b36b01)
2018-08-11 03:03:31,401 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-ba32f0ef-94ca-47fa-8da2-cfc2b5b36b01
2018-08-11 03:03:31,401 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(20e4ae72-496d-4b38-be24-845cea7aadad)
2018-08-11 03:03:31,401 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-20e4ae72-496d-4b38-be24-845cea7aadad
2018-08-11 03:03:31,401 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(af95ce90-ac96-4235-8254-98dd5f53878d)
2018-08-11 03:03:31,401 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-af95ce90-ac96-4235-8254-98dd5f53878d
2018-08-11 03:03:31,401 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(3be432f1-c4f3-4e1e-ad60-dbf04d97e1bf)
2018-08-11 03:03:31,401 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-3be432f1-c4f3-4e1e-ad60-dbf04d97e1bf
2018-08-11 03:03:31,401 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(7a9803d4-b4f5-45f9-aad9-3193335b7129)
2018-08-11 03:03:31,402 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-7a9803d4-b4f5-45f9-aad9-3193335b7129
2018-08-11 03:03:31,402 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(171b1387-b7a4-416d-aa63-86829d8039dd)
2018-08-11 03:03:31,402 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-171b1387-b7a4-416d-aa63-86829d8039dd
2018-08-11 03:03:31,402 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(7c349a44-4eca-448d-9a02-114da3e0cd45)
2018-08-11 03:03:31,402 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-7c349a44-4eca-448d-9a02-114da3e0cd45
2018-08-11 03:03:31,402 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(cd413a7b-1835-4a8f-87c7-7df351a5c649)
2018-08-11 03:03:31,402 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-cd413a7b-1835-4a8f-87c7-7df351a5c649
2018-08-11 03:03:31,402 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(b89dd9bd-74c6-4f6e-8487-844be5fb23d9)
2018-08-11 03:03:31,402 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-b89dd9bd-74c6-4f6e-8487-844be5fb23d9
2018-08-11 03:03:31,402 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(9885fa07-3820-45d9-8d28-a2c9bcd351f6)
2018-08-11 03:03:31,402 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-9885fa07-3820-45d9-8d28-a2c9bcd351f6
2018-08-11 03:03:31,402 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(6648fdb1-fdf1-4996-82c5-4b8ef24674a7)
2018-08-11 03:03:31,402 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-6648fdb1-fdf1-4996-82c5-4b8ef24674a7
2018-08-11 03:03:31,402 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(c9359ca2-3b35-46c3-9f8d-69f196f8c234)
2018-08-11 03:03:31,402 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-c9359ca2-3b35-46c3-9f8d-69f196f8c234
2018-08-11 03:03:31,402 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(0e656752-aaad-4e45-9121-5b4c13ad7568)
2018-08-11 03:03:31,402 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-0e656752-aaad-4e45-9121-5b4c13ad7568
2018-08-11 03:03:31,402 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(12075b5a-0b94-4d41-9c8d-a7296ca9c123)
2018-08-11 03:03:31,402 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-12075b5a-0b94-4d41-9c8d-a7296ca9c123
2018-08-11 03:03:31,402 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(03623b51-49d1-4dd1-a156-75c8afdb3ba3)
2018-08-11 03:03:31,402 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-03623b51-49d1-4dd1-a156-75c8afdb3ba3
2018-08-11 03:03:31,402 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(f2920645-5e3b-4310-825c-50f1225cf9b7)
2018-08-11 03:03:31,402 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-f2920645-5e3b-4310-825c-50f1225cf9b7
2018-08-11 03:03:31,402 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(ec50b955-8811-4810-ba70-f44000e9704c)
2018-08-11 03:03:31,402 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-ec50b955-8811-4810-ba70-f44000e9704c
2018-08-11 03:03:31,403 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(7956ba9d-3aa5-4817-bbbc-87615e22e697)
2018-08-11 03:03:31,403 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-7956ba9d-3aa5-4817-bbbc-87615e22e697
2018-08-11 03:03:31,403 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(6dff21b8-2de9-4cd4-94a7-3217ea2dade1)
2018-08-11 03:03:31,403 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-6dff21b8-2de9-4cd4-94a7-3217ea2dade1
2018-08-11 03:03:31,403 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(1522d1c5-a39b-4ad6-a2a2-4291d4b968e1)
2018-08-11 03:03:31,403 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-1522d1c5-a39b-4ad6-a2a2-4291d4b968e1
2018-08-11 03:03:31,403 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(e156075b-3665-4f74-a3d6-0e5b0a2c7c14)
2018-08-11 03:03:31,403 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-e156075b-3665-4f74-a3d6-0e5b0a2c7c14
2018-08-11 03:03:31,403 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(349a0c37-10db-40da-9337-b26ba7d3773a)
2018-08-11 03:03:31,403 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-349a0c37-10db-40da-9337-b26ba7d3773a
2018-08-11 03:03:31,404 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(36f3b181-a6ca-4bba-8122-5921681f9c30)
2018-08-11 03:03:31,404 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-36f3b181-a6ca-4bba-8122-5921681f9c30
2018-08-11 03:03:31,404 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(4f46f274-d37a-4080-b792-f7c7d1e4ec38)
2018-08-11 03:03:31,404 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-4f46f274-d37a-4080-b792-f7c7d1e4ec38
2018-08-11 03:03:31,404 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - Retrieved 26 workflows from the WorkflowStoreActor
2018-08-11 03:03:31,681 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - MaterializeWorkflowDescriptorActor [UUID(af95ce90)]: Parsing workflow as WDL Biscayne
2018-08-11 03:03:31,681 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(7a9803d4)]: Parsing workflow as WDL draft-2
2018-08-11 03:03:31,701 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - MaterializeWorkflowDescriptorActor [UUID(3be432f1)]: Parsing workflow as WDL draft-2
2018-08-11 03:03:31,704 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - MaterializeWorkflowDescriptorActor [UUID(12075b5a)]: Parsing workflow as WDL 1.0
2018-08-11 03:03:31,720 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - MaterializeWorkflowDescriptorActor [UUID(b89dd9bd)]: Parsing workflow as WDL draft-2
2018-08-11 03:03:31,761 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(171b1387)]: Parsing workflow as WDL draft-2
2018-08-11 03:03:31,780 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(7c349a44)]: Parsing workflow as WDL 1.0
2018-08-11 03:03:31,780 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(7a9803d4)]: Call-to-Backend assignments: terminal_status.echo_sleep_exit -> Papi
2018-08-11 03:03:31,787 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - MaterializeWorkflowDescriptorActor [UUID(3be432f1)]: Call-to-Backend assignments: lots_of_inputs.do_nothing -> Papi, lots_of_inputs.make_array -> Papi
2018-08-11 03:03:31,805 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - MaterializeWorkflowDescriptorActor [UUID(6648fdb1)]: Parsing workflow as WDL draft-2
2018-08-11 03:03:31,805 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(6dff21b8)]: Parsing workflow as WDL 1.0
2018-08-11 03:03:31,819 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - MaterializeWorkflowDescriptorActor [UUID(b89dd9bd)]: Call-to-Backend assignments: runtime_continueOnRC.continueOnRC2 -> Papi, runtime_continueOnRC.continueOnRC1 -> Papi, runtime_continueOnRC.finisher -> Papi, runtime_continueOnRC.continueOnRC3 -> Papi
2018-08-11 03:03:31,833 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - MaterializeWorkflowDescriptorActor [UUID(12075b5a)]: Call-to-Backend assignments: optional_declarations.strings2 -> Papi, optional_declarations.strings -> Papi
2018-08-11 03:03:31,838 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - MaterializeWorkflowDescriptorActor [UUID(349a0c37)]: Parsing workflow as CWL v1.0
2018-08-11 03:03:31,839 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - MaterializeWorkflowDescriptorActor [UUID(cd413a7b)]: Parsing workflow as WDL draft-2
2018-08-11 03:03:31,860 INFO - Pre-Processing /tmp/349a0c37-10db-40da-9337-b26ba7d3773a.temp.2005326509091381200/349a0c37-10db-40da-9337-b26ba7d3773a.cwl
2018-08-11 03:03:31,873 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(7c349a44)]: Call-to-Backend assignments: callable_imports.my_task -> Papi
2018-08-11 03:03:31,874 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(36f3b181)]: Parsing workflow as WDL draft-2
2018-08-11 03:03:31,874 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(6dff21b8)]: Call-to-Backend assignments: draft3_omitting_outputs.foo -> Papi, foo_in_a_box.foo -> Papi
2018-08-11 03:03:31,879 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(ec50b955)]: Parsing workflow as WDL draft-2
2018-08-11 03:03:31,915 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - MaterializeWorkflowDescriptorActor [UUID(6648fdb1)]: Call-to-Backend assignments: curl_wf.newsgrab -> Papi, curl_wf.news_reader -> Papi
2018-08-11 03:03:31,922 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - MaterializeWorkflowDescriptorActor [UUID(f2920645)]: Parsing workflow as CWL v1.0
2018-08-11 03:03:31,937 INFO - Pre-Processing /tmp/f2920645-5e3b-4310-825c-50f1225cf9b7.temp.7408926811979967929/f2920645-5e3b-4310-825c-50f1225cf9b7.cwl
2018-08-11 03:03:31,948 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - MaterializeWorkflowDescriptorActor [UUID(af95ce90)]: Call-to-Backend assignments:
2018-08-11 03:03:31,979 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(ec50b955)]: Call-to-Backend assignments: mirror_mirror_on_the_wall.mirror1 -> Papi, mirror_mirror_on_the_wall.mirror2 -> Papi, mirror_mirror_on_the_wall.mkFile -> Papi
2018-08-11 03:03:31,989 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(171b1387)]: Call-to-Backend assignments: subhello.hello -> Papi
2018-08-11 03:03:31,991 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(e156075b)]: Parsing workflow as WDL draft-2
2018-08-11 03:03:32,022 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(7956ba9d)]: Parsing workflow as CWL v1.0
2018-08-11 03:03:32,024 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor WorkflowActor-4506a204-53c2-42a1-95d8-0ca23ad2a44e is in a terminal state: WorkflowSucceededState
2018-08-11 03:03:32,024 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - MaterializeWorkflowDescriptorActor [UUID(0e656752)]: Parsing workflow as WDL draft-2
2018-08-11 03:03:32,030 INFO - Pre-Processing /tmp/7956ba9d-3aa5-4817-bbbc-87615e22e697.temp.7159836909039717642/7956ba9d-3aa5-4817-bbbc-87615e22e697.cwl
2018-08-11 03:03:32,050 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(36f3b181)]: Call-to-Backend assignments: read_write_json.round_trip -> Papi, read_write_json.make_some_json -> Papi, read_write_json.success -> Papi
2018-08-11 03:03:32,059 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(ba32f0ef)]: Parsing workflow as WDL draft-2
2018-08-11 03:03:32,066 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - MaterializeWorkflowDescriptorActor [UUID(0e656752)]: Call-to-Backend assignments: woot.notroot -> Papi
2018-08-11 03:03:32,069 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - MaterializeWorkflowDescriptorActor [UUID(9885fa07)]: Parsing workflow as WDL draft-2
2018-08-11 03:03:32,110 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(e156075b)]: Call-to-Backend assignments: scoping_wf.scoping_task -> Papi
2018-08-11 03:03:32,114 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(4f46f274)]: Parsing workflow as WDL draft-2
2018-08-11 03:03:32,117 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - MaterializeWorkflowDescriptorActor [UUID(9885fa07)]: Call-to-Backend assignments: monitoring_log.get_stats -> Papi
2018-08-11 03:03:32,124 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - MaterializeWorkflowDescriptorActor [UUID(c9359ca2)]: Parsing workflow as WDL draft-2
2018-08-11 03:03:32,138 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(03623b51)]: Parsing workflow as WDL 1.0
2018-08-11 03:03:32,262 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - MaterializeWorkflowDescriptorActor [UUID(c9359ca2)]: Call-to-Backend assignments: wdl_function_locations.wdl_function_locations_ii -> Papi, wdl_function_locations.wdl_function_locations_i -> Papi
2018-08-11 03:03:32,293 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - MaterializeWorkflowDescriptorActor [UUID(e7ee3d80)]: Parsing workflow as WDL draft-2
2018-08-11 03:03:32,345 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(4f46f274)]: Call-to-Backend assignments: two_step.cat -> Papi, two_step.make_a_file -> Papi, two_step.cgrep -> Papi
2018-08-11 03:03:32,356 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(1522d1c5)]: Parsing workflow as WDL draft-2
2018-08-11 03:03:32,379 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(03623b51)]: Call-to-Backend assignments:
2018-08-11 03:03:32,386 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(20e4ae72)]: Parsing workflow as WDL 1.0
2018-08-11 03:03:32,449 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(20e4ae72)]: Call-to-Backend assignments: custom_mount_point.t -> Papi
2018-08-11 03:03:32,482 cromwell-system-akka.dispatchers.engine-dispatcher-25 ERROR - WorkflowManagerActor Workflow ba32f0ef-94ca-47fa-8da2-cfc2b5b36b01 failed (during MaterializingWorkflowDescriptorState): cromwell.engine.workflow.lifecycle.materialization.MaterializeWorkflowDescriptorActor$$anon$1: Workflow input processing failed:
ERROR: Call references a task (sub_inputs) that doesn't exist (line 19, col 9)
call sub_inputs {}
^
at cromwell.engine.workflow.lifecycle.materialization.MaterializeWorkflowDescriptorActor.cromwell$engine$workflow$lifecycle$materialization$MaterializeWorkflowDescriptorActor$$workflowInitializationFailed(MaterializeWorkflowDescriptorActor.scala:209)
at cromwell.engine.workflow.lifecycle.materialization.MaterializeWorkflowDescriptorActor$$anonfun$2.applyOrElse(MaterializeWorkflowDescriptorActor.scala:179)
at cromwell.engine.workflow.lifecycle.materialization.MaterializeWorkflowDescriptorActor$$anonfun$2.applyOrElse(MaterializeWorkflowDescriptorActor.scala:174)
at scala.runtime.AbstractPartialFunction.apply(AbstractPartialFunction.scala:34)
at akka.actor.FSM.processEvent(FSM.scala:670)
at akka.actor.FSM.processEvent$(FSM.scala:667)
at cromwell.engine.workflow.lifecycle.materialization.MaterializeWorkflowDescriptorActor.akka$actor$LoggingFSM$$super$processEvent(MaterializeWorkflowDescriptorActor.scala:132)
at akka.actor.LoggingFSM.processEvent(FSM.scala:806)
at akka.actor.LoggingFSM.processEvent$(FSM.scala:788)
at cromwell.engine.workflow.lifecycle.materialization.MaterializeWorkflowDescriptorActor.processEvent(MaterializeWorkflowDescriptorActor.scala:132)
at akka.actor.FSM.akka$actor$FSM$$processMsg(FSM.scala:664)
at akka.actor.FSM$$anonfun$receive$1.applyOrElse(FSM.scala:658)
at akka.actor.Actor.aroundReceive(Actor.scala:517)
at akka.actor.Actor.aroundReceive$(Actor.scala:515)
at cromwell.engine.workflow.lifecycle.materialization.MaterializeWorkflowDescriptorActor.aroundReceive(MaterializeWorkflowDescriptorActor.scala:132)
at akka.actor.ActorCell.receiveMessage(ActorCell.scala:588)
at akka.actor.ActorCell.invoke(ActorCell.scala:557)
at akka.dispatch.Mailbox.processMailbox(Mailbox.scala:258)
at akka.dispatch.Mailbox.run(Mailbox.scala:225)
at akka.dispatch.Mailbox.exec(Mailbox.scala:235)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:03:32,483 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor WorkflowActor-ba32f0ef-94ca-47fa-8da2-cfc2b5b36b01 is in a terminal state: WorkflowFailedState
2018-08-11 03:03:32,505 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(4c8e6262)]: Parsing workflow as WDL draft-2
2018-08-11 03:03:32,512 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - MaterializeWorkflowDescriptorActor [UUID(e7ee3d80)]: Call-to-Backend assignments: invalidate_bad_caches.make_file -> Papi-Caching-No-Copy, invalidate_bad_caches.read_file -> Papi-Caching-No-Copy, invalidate_bad_caches.invalidate_cache_and_remake_file -> Papi-Caching-No-Copy, invalidate_bad_caches.delete_file_in_gcs -> Papi-Caching-No-Copy
2018-08-11 03:03:32,579 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(1522d1c5)]: Call-to-Backend assignments: test.echo_str_2 -> Papi, test.echo_str -> Papi
2018-08-11 03:03:32,599 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor WorkflowActor-2fb6debd-2af2-4054-8b2f-868061c6c4e9 is in a terminal state: WorkflowSucceededState
2018-08-11 03:03:32,617 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor WorkflowActor-5f61c4de-3e98-4c84-92e2-559be38bc189 is in a terminal state: WorkflowSucceededState
2018-08-11 03:03:32,633 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(4c8e6262)]: Call-to-Backend assignments: wf.write_map -> Papi, wf.read_map -> Papi
Metadata mismatch for 18d037d0-63d7-4ff3-a7c1-4dbdc20ce058 - retrying
Metadata mismatch for 18d037d0-63d7-4ff3-a7c1-4dbdc20ce058 - retrying
2018-08-11 03:03:35,736 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowExecutionActor-af95ce90-ac96-4235-8254-98dd5f53878d [UUID(af95ce90)]: Workflow biscayne_as_map_et_al complete. Final Outputs:
{
"biscayne_as_map_et_al.x_as_pairs_out": [{
"left": "a",
"right": 1
}, {
"left": "b",
"right": 2
}, {
"left": "c",
"right": 3
}],
"biscayne_as_map_et_al.z_collect_by_key_out": {
"b": [2],
"a": [1, 3]
},
"biscayne_as_map_et_al.x_as_map_out": {
"b": 2,
"c": 3,
"a": 1
},
"biscayne_as_map_et_al.y_as_map_out": {
"b": {
"left": "b.bam",
"right": "b.bai"
},
"a": {
"left": "a.bam",
"right": "a.bai"
}
},
"biscayne_as_map_et_al.x_collect_by_key_out": {
"b": [2],
"c": [3],
"a": [1]
},
"biscayne_as_map_et_al.y_as_pairs_out": [{
"left": "a",
"right": {
"left": "a.bam",
"right": "a.bai"
}
}, {
"left": "b",
"right": {
"left": "b.bam",
"right": "b.bai"
}
}]
}
2018-08-11 03:03:36,045 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(7956ba9d)]: Call-to-Backend assignments: 7956ba9d-3aa5-4817-bbbc-87615e22e697.cwl -> Papi
2018-08-11 03:03:36,142 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - MaterializeWorkflowDescriptorActor [UUID(f2920645)]: Call-to-Backend assignments: cwl-cache-between-workflows.step-product -> Papi, cwl-cache-between-workflows.step-average -> Papi
2018-08-11 03:03:36,247 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - MaterializeWorkflowDescriptorActor [UUID(349a0c37)]: Call-to-Backend assignments: iwdr_input_string_function -> Papi
2018-08-11 03:03:36,672 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowExecutionActor-03623b51-49d1-4dd1-a156-75c8afdb3ba3 [UUID(03623b51)]: Workflow taskless_engine_functions complete. Final Outputs:
{
"taskless_engine_functions.flattened_map": [{
"left": 1,
"right": "one"
}, {
"left": 2,
"right": "two"
}, {
"left": 11,
"right": "eleven"
}, {
"left": 22,
"right": "twenty-two"
}],
"taskless_engine_functions.f_floor": 1,
"taskless_engine_functions.transposed_matrix": [[1, 1], [0, 0]],
"taskless_engine_functions.file_basename": "file.txt",
"taskless_engine_functions.f_ceiling": 2,
"taskless_engine_functions.matrix_length": 2,
"taskless_engine_functions.file_basename_extensionless": "file",
"taskless_engine_functions.f_round": 1,
"taskless_engine_functions.flattened_matrix": [1, 0, 1, 0],
"taskless_engine_functions.int_cross_string": [{
"left": 1,
"right": "a"
}, {
"left": 1,
"right": "b"
}, {
"left": 2,
"right": "a"
}, {
"left": 2,
"right": "b"
}],
"taskless_engine_functions.flattened_matrix_length": 4
}
2018-08-11 03:03:36,839 cromwell-system-akka.dispatchers.api-dispatcher-58 INFO - Unspecified type (Unspecified version) workflow d18fbada-0555-4e80-a08e-bcc4d4d9ba8d submitted
Metadata mismatch for 18d037d0-63d7-4ff3-a7c1-4dbdc20ce058 - retrying
2018-08-11 03:03:38,967 ERROR - Test 'fail during execution max_retries' with workflow id '18d037d0-63d7-4ff3-a7c1-4dbdc20ce058' failed on attempt 1 of 3
centaur.test.CentaurTestException: Invalid metadata response:
-Missing key: retry_for_me.broken_task.-1.attempt
-Missing key: retry_for_me.broken_task.-1.executionStatus
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26)
at centaur.test.Operations$$anon$14.checkDiff$1(Test.scala:358)
at centaur.test.Operations$$anon$14.$anonfun$validateMetadata$3(Test.scala:382)
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138)
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304)
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125)
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70)
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36)
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93)
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93)
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43)
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44)
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284)
at scala.concurrent.Promise.complete(Promise.scala:49)
at scala.concurrent.Promise.complete$(Promise.scala:48)
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183)
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:03:38,996 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - Unspecified type (Unspecified version) workflow 2d13b86b-b39f-4bd1-bbbc-861fe998bf3b submitted
2018-08-11 03:03:39,581 cromwell-system-akka.dispatchers.api-dispatcher-58 INFO - Unspecified type (Unspecified version) workflow eb2bbf62-e6c4-4864-a109-55b70b728ff0 submitted
2018-08-11 03:03:40,187 cromwell-system-akka.dispatchers.backend-dispatcher-78 WARN - 1 failures (from 25 requests) fetching JES statuses: connect timed out
2018-08-11 03:03:40,251 cromwell-system-akka.dispatchers.backend-dispatcher-78 WARN - Papi-Caching-No-Copy [UUID(e7ee3d80)]: Key/s [backend] is/are not supported by backend. Unsupported attributes will not be part of job executions.
2018-08-11 03:03:40,257 cromwell-system-akka.dispatchers.backend-dispatcher-78 WARN - Papi-Caching-No-Copy [UUID(e7ee3d80)]: Key/s [backend] is/are not supported by backend. Unsupported attributes will not be part of job executions.
2018-08-11 03:03:40,269 cromwell-system-akka.dispatchers.backend-dispatcher-78 WARN - Papi-Caching-No-Copy [UUID(e7ee3d80)]: Key/s [backend] is/are not supported by backend. Unsupported attributes will not be part of job executions.
2018-08-11 03:03:40,270 cromwell-system-akka.dispatchers.backend-dispatcher-78 WARN - Papi-Caching-No-Copy [UUID(e7ee3d80)]: Key/s [backend] is/are not supported by backend. Unsupported attributes will not be part of job executions.
2018-08-11 03:03:40,472 cromwell-system-akka.dispatchers.backend-dispatcher-78 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(819450a6)length.lens:NA:1]: Status change from - to Running
2018-08-11 03:03:40,478 cromwell-system-akka.dispatchers.backend-dispatcher-78 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(29014d92)multplesourcedarray.source6:NA:1]: `sleep 11
echo blah`
2018-08-11 03:03:40,491 cromwell-system-akka.dispatchers.backend-dispatcher-80 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(86bc228d)declarations_in_ifs.double_i:NA:1]: `echo $(( 5 * 2 ))`
2018-08-11 03:03:40,502 cromwell-system-akka.dispatchers.backend-dispatcher-81 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(5e287608)forkjoin.mkFile:NA:1]: `for i in `seq 1 1000`
do
echo $i
done`
2018-08-11 03:03:40,523 cromwell-system-akka.dispatchers.backend-dispatcher-81 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(0bae37d3)draft3_optional_addition.call_me:0:1]: `echo "cmd --only-with-maybe_i 0"`
2018-08-11 03:03:40,534 cromwell-system-akka.dispatchers.backend-dispatcher-82 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(29014d92)multplesourcedarray.source4:NA:1]: `sleep 4
echo blah`
2018-08-11 03:03:40,546 cromwell-system-akka.dispatchers.backend-dispatcher-83 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(da0a3242)globbingindex.glob_task:NA:1]: `echo "staticFile" > staticFile.txt
echo "staticArray" > staticArray.txt
echo "globFile" > globFile.txt
echo "globArray" > globArray.txt`
2018-08-11 03:03:40,559 cromwell-system-akka.dispatchers.backend-dispatcher-84 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(29014d92)multplesourcedarray.source5:NA:1]: `sleep 10
echo blah`
2018-08-11 03:03:40,567 cromwell-system-akka.dispatchers.backend-dispatcher-85 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(29014d92)multplesourcedarray.source2:NA:1]: `sleep 2
echo blah`
2018-08-11 03:03:40,576 cromwell-system-akka.dispatchers.backend-dispatcher-86 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(9a862b7e)declarations_as_nodes.t1:NA:1]: `echo "hello"`
2018-08-11 03:03:40,586 cromwell-system-akka.dispatchers.backend-dispatcher-87 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(0bae37d3)draft3_optional_addition.call_me:1:1]: `echo "cmd"`
2018-08-11 03:03:40,595 cromwell-system-akka.dispatchers.backend-dispatcher-88 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(29014d92)multplesourcedarray.source1:NA:1]: `sleep 1
echo blah`
2018-08-11 03:03:40,598 cromwell-system-akka.dispatchers.backend-dispatcher-89 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(bfe074e7)draft3_read_file_limits.readObject:NA:1]: Status change from - to Running
2018-08-11 03:03:40,624 cromwell-system-akka.dispatchers.backend-dispatcher-89 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(6a39077e)subhello.hello:NA:1]: ``
2018-08-11 03:03:40,632 cromwell-system-akka.dispatchers.backend-dispatcher-89 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(f8901107)nested_lookups.throwaway2:NA:1]: `echo 27`
2018-08-11 03:03:40,643 cromwell-system-akka.dispatchers.backend-dispatcher-90 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(29014d92)multplesourcedarray.source7:NA:1]: `sleep 12
echo blah`
2018-08-11 03:03:40,648 cromwell-system-akka.dispatchers.backend-dispatcher-91 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(bfe074e7)draft3_read_file_limits.readObjects:NA:1]: Status change from - to Running
2018-08-11 03:03:40,652 cromwell-system-akka.dispatchers.backend-dispatcher-91 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(f8901107)nested_lookups.throwaway1:NA:1]: `echo 27`
2018-08-11 03:03:40,658 cromwell-system-akka.dispatchers.backend-dispatcher-92 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(29014d92)multplesourcedarray.source3:NA:1]: `sleep 3
echo blah`
2018-08-11 03:03:40,663 cromwell-system-akka.dispatchers.backend-dispatcher-93 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(f8901107)nested_lookups.m1:NA:1]: `echo 27`
2018-08-11 03:03:40,668 cromwell-system-akka.dispatchers.backend-dispatcher-94 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(120f534f)subhello.hello:NA:1]: ``
2018-08-11 03:03:40,673 cromwell-system-akka.dispatchers.backend-dispatcher-94 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(f8901107)nested_lookups.needs_wf_input:NA:1]: `echo 2050`
2018-08-11 03:03:40,686 cromwell-system-akka.dispatchers.backend-dispatcher-95 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(30ebe86b)subhello.hello:NA:1]: ``
2018-08-11 03:03:40,690 cromwell-system-akka.dispatchers.backend-dispatcher-95 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(bfe074e7)draft3_read_file_limits.readLines:NA:1]: Status change from - to Running
2018-08-11 03:03:40,690 cromwell-system-akka.dispatchers.backend-dispatcher-95 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(6de9f48d)restart_while_failing.A:NA:1]: Status change from - to Running
2018-08-11 03:03:40,691 cromwell-system-akka.dispatchers.backend-dispatcher-95 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(6de9f48d)restart_while_failing.sleep_exit:3:1]: Status change from - to Running
2018-08-11 03:03:40,691 cromwell-system-akka.dispatchers.backend-dispatcher-95 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(bfe074e7)draft3_read_file_limits.readString:NA:1]: Status change from - to Running
2018-08-11 03:03:40,691 cromwell-system-akka.dispatchers.backend-dispatcher-95 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(bfe074e7)draft3_read_file_limits.readMap:NA:1]: Status change from - to Running
2018-08-11 03:03:40,691 cromwell-system-akka.dispatchers.backend-dispatcher-95 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(6de9f48d)restart_while_failing.sleep_exit:2:1]: Status change from - to Running
2018-08-11 03:03:40,692 cromwell-system-akka.dispatchers.backend-dispatcher-95 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(bfe074e7)draft3_read_file_limits.readJson:NA:1]: Status change from - to Running
2018-08-11 03:03:40,693 cromwell-system-akka.dispatchers.backend-dispatcher-95 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(8efa7bd2)badExample.bad:NA:1]: `echo "hello" > a`
2018-08-11 03:03:40,709 cromwell-system-akka.dispatchers.backend-dispatcher-95 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(bfe074e7)draft3_read_file_limits.readTsv:NA:1]: Status change from - to Running
2018-08-11 03:03:40,710 cromwell-system-akka.dispatchers.backend-dispatcher-95 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(bfe074e7)draft3_read_file_limits.readBoolean:NA:1]: Status change from - to Running
2018-08-11 03:03:40,710 cromwell-system-akka.dispatchers.backend-dispatcher-95 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(bfe074e7)draft3_read_file_limits.readFloat:NA:1]: Status change from - to Running
2018-08-11 03:03:40,711 cromwell-system-akka.dispatchers.backend-dispatcher-95 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(6de9f48d)restart_while_failing.sleep_exit:4:1]: Status change from - to Running
2018-08-11 03:03:40,711 cromwell-system-akka.dispatchers.backend-dispatcher-95 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(6de9f48d)restart_while_failing.sleep_exit:1:1]: Status change from - to Running
2018-08-11 03:03:40,712 cromwell-system-akka.dispatchers.backend-dispatcher-95 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(6de9f48d)restart_while_failing.sleep_exit:0:1]: Status change from - to Running
2018-08-11 03:03:40,713 cromwell-system-akka.dispatchers.backend-dispatcher-95 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(bfe074e7)draft3_read_file_limits.readInt:NA:1]: Status change from - to Running
2018-08-11 03:03:40,714 cromwell-system-akka.dispatchers.backend-dispatcher-95 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(c09bd460)filearrayoutput.createFileArray:NA:1]: Status change from - to Running
2018-08-11 03:03:40,749 cromwell-system-akka.dispatchers.backend-dispatcher-95 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(45af4273)ifs_in_scatters.init:NA:1]: Status change from - to Running
2018-08-11 03:03:40,749 cromwell-system-akka.dispatchers.engine-dispatcher-30 ERROR - WorkflowManagerActor Workflow f5fda0a4-41e1-4831-8b31-d217e968a68c failed (during ExecutingWorkflowState): java.lang.RuntimeException: Failed to evaluate 'missing_input_failure.hello.addressee' (reason 1 of 1): Evaluating read_string(wf_hello_input) failed: java.io.IOException: Could not read from gs://nonexistingbucket/path/doesnt/exist: File not found: gs://nonexistingbucket/path/doesnt/exist
at cromwell.engine.workflow.lifecycle.execution.keys.ExpressionKey.processRunnable(ExpressionKey.scala:29)
at cromwell.engine.workflow.lifecycle.execution.WorkflowExecutionActor.$anonfun$processRunnableTaskCallInputExpression$4(WorkflowExecutionActor.scala:483)
at scala.util.Either.flatMap(Either.scala:338)
at cromwell.engine.workflow.lifecycle.execution.WorkflowExecutionActor.$anonfun$processRunnableTaskCallInputExpression$2(WorkflowExecutionActor.scala:480)
at scala.util.Either.flatMap(Either.scala:338)
at cromwell.engine.workflow.lifecycle.execution.WorkflowExecutionActor.$anonfun$processRunnableTaskCallInputExpression$1(WorkflowExecutionActor.scala:479)
at scala.util.Either.flatMap(Either.scala:338)
at cromwell.engine.workflow.lifecycle.execution.WorkflowExecutionActor.processRunnableTaskCallInputExpression(WorkflowExecutionActor.scala:478)
at cromwell.engine.workflow.lifecycle.execution.WorkflowExecutionActor.$anonfun$startRunnableNodes$4(WorkflowExecutionActor.scala:452)
at cats.instances.ListInstances$$anon$1.$anonfun$traverse$2(list.scala:73)
at cats.instances.ListInstances$$anon$1.loop$2(list.scala:63)
at cats.instances.ListInstances$$anon$1.$anonfun$foldRight$2(list.scala:65)
at cats.Eval$.advance(Eval.scala:272)
at cats.Eval$.loop$1(Eval.scala:354)
at cats.Eval$.cats$Eval$$evaluate(Eval.scala:372)
at cats.Eval$Defer.value(Eval.scala:258)
at cats.instances.ListInstances$$anon$1.traverse(list.scala:72)
at cats.instances.ListInstances$$anon$1.traverse(list.scala:12)
at cats.Traverse$Ops.traverse(Traverse.scala:19)
at cats.Traverse$Ops.traverse$(Traverse.scala:19)
at cats.Traverse$ToTraverseOps$$anon$3.traverse(Traverse.scala:19)
at cromwell.engine.workflow.lifecycle.execution.WorkflowExecutionActor.cromwell$engine$workflow$lifecycle$execution$WorkflowExecutionActor$$startRunnableNodes(WorkflowExecutionActor.scala:447)
at cromwell.engine.workflow.lifecycle.execution.WorkflowExecutionActor$$anonfun$5.applyOrElse(WorkflowExecutionActor.scala:152)
at cromwell.engine.workflow.lifecycle.execution.WorkflowExecutionActor$$anonfun$5.applyOrElse(WorkflowExecutionActor.scala:150)
at scala.PartialFunction$OrElse.apply(PartialFunction.scala:168)
at akka.actor.FSM.processEvent(FSM.scala:673)
at akka.actor.FSM.processEvent$(FSM.scala:667)
at cromwell.engine.workflow.lifecycle.execution.WorkflowExecutionActor.akka$actor$LoggingFSM$$super$processEvent(WorkflowExecutionActor.scala:43)
at akka.actor.LoggingFSM.processEvent(FSM.scala:806)
at akka.actor.LoggingFSM.processEvent$(FSM.scala:788)
at cromwell.engine.workflow.lifecycle.execution.WorkflowExecutionActor.processEvent(WorkflowExecutionActor.scala:43)
at akka.actor.FSM.akka$actor$FSM$$processMsg(FSM.scala:664)
at akka.actor.FSM$$anonfun$receive$1.applyOrElse(FSM.scala:658)
at akka.actor.Actor.aroundReceive(Actor.scala:517)
at akka.actor.Actor.aroundReceive$(Actor.scala:515)
at cromwell.engine.workflow.lifecycle.execution.WorkflowExecutionActor.akka$actor$Timers$$super$aroundReceive(WorkflowExecutionActor.scala:43)
at akka.actor.Timers.aroundReceive(Timers.scala:51)
at akka.actor.Timers.aroundReceive$(Timers.scala:40)
at cromwell.engine.workflow.lifecycle.execution.WorkflowExecutionActor.aroundReceive(WorkflowExecutionActor.scala:43)
at akka.actor.ActorCell.receiveMessage(ActorCell.scala:588)
at akka.actor.ActorCell.invoke(ActorCell.scala:557)
at akka.dispatch.Mailbox.processMailbox(Mailbox.scala:258)
at akka.dispatch.Mailbox.run(Mailbox.scala:225)
at akka.dispatch.Mailbox.exec(Mailbox.scala:235)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:03:40,749 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor WorkflowActor-f5fda0a4-41e1-4831-8b31-d217e968a68c is in a terminal state: WorkflowFailedState
2018-08-11 03:03:40,868 cromwell-system-akka.dispatchers.backend-dispatcher-95 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(45af4273)ifs_in_scatters.validate_int:1:1]: Status change from - to Running
2018-08-11 03:03:40,868 cromwell-system-akka.dispatchers.backend-dispatcher-95 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(45af4273)ifs_in_scatters.validate_int:2:1]: Status change from - to Running
2018-08-11 03:03:42,821 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowExecutionActor-7f63eea1-9295-4060-aca6-b2dc353c9494 [UUID(7f63eea1)]: Starting cont_while_possible_scatter.odd_numbers_only (4 shards)
2018-08-11 03:03:43,482 cromwell-system-akka.dispatchers.api-dispatcher-65 INFO - WDL (1.0) workflow f019fed2-8f38-449b-8871-3b2a6331a780 submitted
2018-08-11 03:03:44,359 cromwell-system-akka.dispatchers.api-dispatcher-67 INFO - Unspecified type (Unspecified version) workflow 8d1c0d0f-33bb-449c-b0dc-53b1d60c42df submitted
- should successfully run draft3_default_input_overrides (15 seconds, 80 milliseconds)
- should fail during execution missing_input_failure_papiv2 (1 minute, 25 seconds)
2018-08-11 03:03:49,687 cromwell-system-akka.dispatchers.api-dispatcher-58 INFO - Unspecified type (Unspecified version) workflow 8a56905f-5f6e-4eb1-b445-0c032ec6ee37 submitted
Aug 11, 2018 3:03:52 AM com.google.api.client.http.HttpRequest execute
WARNING: exception thrown while executing request
java.net.SocketTimeoutException: connect timed out
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673)
at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264)
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291)
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250)
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981)
at com.google.auth.oauth2.ServiceAccountCredentials.refreshAccessToken(ServiceAccountCredentials.java:378)
at com.google.auth.oauth2.OAuth2Credentials.refresh(OAuth2Credentials.java:160)
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode.$anonfun$credentialValidation$1(GoogleAuthMode.scala:112)
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode.$anonfun$credentialValidation$1$adapted(GoogleAuthMode.scala:112)
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode.$anonfun$validateCredential$1(GoogleAuthMode.scala:115)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.util.Try$.apply(Try.scala:209)
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode.validateCredential(GoogleAuthMode.scala:115)
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode.validateCredential$(GoogleAuthMode.scala:114)
at cromwell.cloudsupport.gcp.auth.ServiceAccountMode.validateCredential(GoogleAuthMode.scala:150)
at cromwell.cloudsupport.gcp.auth.ServiceAccountMode._credential$lzycompute(GoogleAuthMode.scala:169)
at cromwell.cloudsupport.gcp.auth.ServiceAccountMode._credential(GoogleAuthMode.scala:158)
at cromwell.cloudsupport.gcp.auth.ServiceAccountMode.credential(GoogleAuthMode.scala:172)
at cromwell.filesystems.gcs.GoogleUtil$EnhancedGoogleAuthMode$.credential$1(GoogleUtil.scala:33)
at cromwell.filesystems.gcs.GoogleUtil$EnhancedGoogleAuthMode$.$anonfun$retryCredential$4(GoogleUtil.scala:49)
at scala.concurrent.Future$.$anonfun$apply$1(Future.scala:654)
at scala.util.Success.$anonfun$map$1(Try.scala:251)
at scala.util.Success.map(Try.scala:209)
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288)
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29)
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
Aug 11, 2018 3:03:52 AM com.google.api.client.http.HttpRequest execute
WARNING: exception thrown while executing request
java.net.SocketTimeoutException: connect timed out
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673)
at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264)
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291)
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250)
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981)
at com.google.auth.oauth2.ServiceAccountCredentials.refreshAccessToken(ServiceAccountCredentials.java:378)
at com.google.auth.oauth2.OAuth2Credentials.refresh(OAuth2Credentials.java:160)
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode.$anonfun$credentialValidation$1(GoogleAuthMode.scala:112)
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode.$anonfun$credentialValidation$1$adapted(GoogleAuthMode.scala:112)
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode.$anonfun$validateCredential$1(GoogleAuthMode.scala:115)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.util.Try$.apply(Try.scala:209)
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode.validateCredential(GoogleAuthMode.scala:115)
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode.validateCredential$(GoogleAuthMode.scala:114)
at cromwell.cloudsupport.gcp.auth.ServiceAccountMode.validateCredential(GoogleAuthMode.scala:150)
at cromwell.cloudsupport.gcp.auth.ServiceAccountMode._credential$lzycompute(GoogleAuthMode.scala:169)
at cromwell.cloudsupport.gcp.auth.ServiceAccountMode._credential(GoogleAuthMode.scala:158)
at cromwell.cloudsupport.gcp.auth.ServiceAccountMode.credential(GoogleAuthMode.scala:172)
at cromwell.filesystems.gcs.GoogleUtil$EnhancedGoogleAuthMode$.credential$1(GoogleUtil.scala:33)
at cromwell.filesystems.gcs.GoogleUtil$EnhancedGoogleAuthMode$.$anonfun$retryCredential$4(GoogleUtil.scala:49)
at scala.concurrent.Future$.$anonfun$apply$1(Future.scala:654)
at scala.util.Success.$anonfun$map$1(Try.scala:251)
at scala.util.Success.map(Try.scala:209)
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288)
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29)
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:04:01,125 cromwell-system-akka.dispatchers.backend-dispatcher-95 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(45af4273)ifs_in_scatters.validate_int:0:1]: job id: projects/broad-dsde-cromwell-dev/operations/10904609203275886423
2018-08-11 03:04:01,125 cromwell-system-akka.dispatchers.backend-dispatcher-95 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(45af4273)ifs_in_scatters.validate_int:3:1]: job id: projects/broad-dsde-cromwell-dev/operations/11950926058192587168
2018-08-11 03:04:01,196 cromwell-system-akka.dispatchers.backend-dispatcher-81 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(26d179c7)cacheWithinWF.one:NA:1]: job id: projects/broad-dsde-cromwell-dev/operations/12333716053210883462
2018-08-11 03:04:01,671 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowExecutionActor-a2d48a30-a2d8-466f-9b5c-524998b51391 [UUID(a2d48a30)]: Starting I_hope_nobody_names_workflows_like_this_as_it_seems_very_unnecessary_.my_task_aliased
2018-08-11 03:04:02,211 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowExecutionActor-c29e23a5-326d-4527-acee-75f831bfcc7d [UUID(c29e23a5)]: Starting echo_wf.echo
2018-08-11 03:04:02,260 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowExecutionActor-224c1de6-3524-4568-9f2a-7e254ce0348d [UUID(224c1de6)]: Starting interpolatedStrings
2018-08-11 03:04:03,032 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowExecutionActor-7269bc5a-c965-45e3-9c16-51fcb0e0d714 [UUID(7269bc5a)]: Starting draft3_call_cache_capoeira.make_files
2018-08-11 03:04:03,162 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowExecutionActor-c0cc1872-5be8-43aa-b059-6d154162648b [UUID(c0cc1872)]: Starting file_outputs_from_input_wf.file_outputs_from_input
2018-08-11 03:04:04,160 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - fa2c07dd-a885-431c-9263-b5c6d3ed9799-SubWorkflowActor-SubWorkflow-foo_wf:-1:1 [UUID(fa2c07dd)]: Starting foo_wf.add5
2018-08-11 03:04:04,960 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - c1865d4c-f712-44e7-840d-d961eb5fab81-SubWorkflowActor-SubWorkflow-wf_hello:-1:1 [UUID(c1865d4c)]: Starting wf_hello.hello
…- should successfully run draft3_http_imports (15 seconds, 84 milliseconds)
Aug 11, 2018 3:04:12 AM com.google.api.client.http.HttpRequest execute
WARNING: exception thrown while executing request
java.net.SocketTimeoutException: connect timed out
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673)
at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264)
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291)
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250)
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981)
at com.google.auth.oauth2.ServiceAccountCredentials.refreshAccessToken(ServiceAccountCredentials.java:378)
at com.google.auth.oauth2.OAuth2Credentials.refresh(OAuth2Credentials.java:160)
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode.$anonfun$credentialValidation$1(GoogleAuthMode.scala:112)
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode.$anonfun$credentialValidation$1$adapted(GoogleAuthMode.scala:112)
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode.$anonfun$validateCredential$1(GoogleAuthMode.scala:115)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.util.Try$.apply(Try.scala:209)
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode.validateCredential(GoogleAuthMode.scala:115)
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode.validateCredential$(GoogleAuthMode.scala:114)
at cromwell.cloudsupport.gcp.auth.ServiceAccountMode.validateCredential(GoogleAuthMode.scala:150)
at cromwell.cloudsupport.gcp.auth.ServiceAccountMode._credential$lzycompute(GoogleAuthMode.scala:169)
at cromwell.cloudsupport.gcp.auth.ServiceAccountMode._credential(GoogleAuthMode.scala:158)
at cromwell.cloudsupport.gcp.auth.ServiceAccountMode.credential(GoogleAuthMode.scala:172)
at cromwell.filesystems.gcs.GoogleUtil$EnhancedGoogleAuthMode$.credential$1(GoogleUtil.scala:33)
at cromwell.filesystems.gcs.GoogleUtil$EnhancedGoogleAuthMode$.$anonfun$retryCredential$4(GoogleUtil.scala:49)
at scala.concurrent.Future$.$anonfun$apply$1(Future.scala:654)
at scala.util.Success.$anonfun$map$1(Try.scala:251)
at scala.util.Success.map(Try.scala:209)
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288)
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29)
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:04:13,491 cromwell-system-akka.dispatchers.engine-dispatcher-6 ERROR - WorkflowManagerActor Workflow 6bd00416-4477-42d8-8ad9-6f8104a6b9b0 failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673)
at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264)
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291)
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250)
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469)
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101)
at scala.Option.map(Option.scala:146)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121)
at scala.util.Success.$anonfun$map$1(Try.scala:251)
at scala.util.Success.map(Try.scala:209)
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288)
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29)
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:04:13,492 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor WorkflowActor-6bd00416-4477-42d8-8ad9-6f8104a6b9b0 is in a terminal state: WorkflowFailedState
2018-08-11 03:04:13,512 cromwell-system-akka.dispatchers.backend-dispatcher-73 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(7269bc5a)draft3_call_cache_capoeira.make_files:NA:1]: `# Comment to change hash from d2 capoeira
echo bananeira > bananeira.txt
echo balanca > balanca.txt`
2018-08-11 03:04:13,538 cromwell-system-akka.dispatchers.engine-dispatcher-25 ERROR - WorkflowManagerActor Workflow 888d0319-3bb4-422c-b4ec-ad5c23729330 failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673)
at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264)
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291)
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250)
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469)
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101)
at scala.Option.map(Option.scala:146)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121)
at scala.util.Success.$anonfun$map$1(Try.scala:251)
at scala.util.Success.map(Try.scala:209)
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288)
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29)
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:04:13,541 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowManagerActor WorkflowActor-888d0319-3bb4-422c-b4ec-ad5c23729330 is in a terminal state: WorkflowFailedState
2018-08-11 03:04:14,500 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowExecutionActor-8f4fec30-a485-4bcf-968e-565012cc9eb9 [UUID(8f4fec30)]: Starting prefix.pfx
2018-08-11 03:04:15,431 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowExecutionActor-5b027489-94b7-4705-a43c-e68ff1e0ef52 [UUID(5b027489)]: Starting array_io.serialize
2018-08-11 03:04:16,266 ERROR - Test 'successfully run hello_cwl' with workflow id '6bd00416-4477-42d8-8ad9-6f8104a6b9b0' failed on attempt 1 of 3
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26)
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183)
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181)
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138)
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304)
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125)
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70)
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36)
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93)
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93)
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43)
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44)
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284)
at scala.concurrent.Promise.complete(Promise.scala:49)
at scala.concurrent.Promise.complete$(Promise.scala:48)
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183)
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:04:16,295 cromwell-system-akka.dispatchers.api-dispatcher-68 INFO - CWL (v1.0) workflow 4045c6cf-7886-4c5b-b4ee-de418b52c5e0 submitted
2018-08-11 03:04:17,472 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowExecutionActor-5b027489-94b7-4705-a43c-e68ff1e0ef52 [UUID(5b027489)]: Starting array_io.mk_file (3 shards)
- should successfully run draft3_nested_scatter (55 seconds, 111 milliseconds)
- should fail during execution invalid_wdl (5 seconds, 87 milliseconds)
2018-08-11 03:04:18,978 ERROR - Test 'successfully run three_step_cwl' with workflow id '888d0319-3bb4-422c-b4ec-ad5c23729330' failed on attempt 1 of 3
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26)
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183)
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181)
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138)
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304)
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125)
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70)
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36)
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93)
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93)
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43)
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44)
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284)
at scala.concurrent.Promise.complete(Promise.scala:49)
at scala.concurrent.Promise.complete$(Promise.scala:48)
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183)
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:04:19,003 cromwell-system-akka.dispatchers.api-dispatcher-64 INFO - CWL (v1.0) workflow e237159a-ed02-4493-9dc3-d6dad533a21c submitted
- should fail to submit invalid_labels (21 seconds, 71 milliseconds)
2018-08-11 03:04:21,643 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowExecutionActor-8afdcac0-73fb-40c8-b234-594ab8972f1f [UUID(8afdcac0)]: Starting local_gcs.makeGcsFileInJes
2018-08-11 03:04:22,351 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowExecutionActor-848807ee-0436-4356-aece-177756972877 [UUID(848807ee)]: Starting dont_cache_to_failed_jobs.failing_task
2018-08-11 03:04:24,808 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - 8 new workflows fetched
2018-08-11 03:04:24,808 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Starting workflow UUID(d18fbada-0555-4e80-a08e-bcc4d4d9ba8d)
2018-08-11 03:04:24,809 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Successfully started WorkflowActor-d18fbada-0555-4e80-a08e-bcc4d4d9ba8d
2018-08-11 03:04:24,809 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Starting workflow UUID(2d13b86b-b39f-4bd1-bbbc-861fe998bf3b)
2018-08-11 03:04:24,809 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Successfully started WorkflowActor-2d13b86b-b39f-4bd1-bbbc-861fe998bf3b
2018-08-11 03:04:24,809 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Starting workflow UUID(eb2bbf62-e6c4-4864-a109-55b70b728ff0)
2018-08-11 03:04:24,809 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Successfully started WorkflowActor-eb2bbf62-e6c4-4864-a109-55b70b728ff0
2018-08-11 03:04:24,809 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Starting workflow UUID(f019fed2-8f38-449b-8871-3b2a6331a780)
2018-08-11 03:04:24,809 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Successfully started WorkflowActor-f019fed2-8f38-449b-8871-3b2a6331a780
2018-08-11 03:04:24,809 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Starting workflow UUID(8d1c0d0f-33bb-449c-b0dc-53b1d60c42df)
2018-08-11 03:04:24,809 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Successfully started WorkflowActor-8d1c0d0f-33bb-449c-b0dc-53b1d60c42df
2018-08-11 03:04:24,809 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Starting workflow UUID(8a56905f-5f6e-4eb1-b445-0c032ec6ee37)
2018-08-11 03:04:24,809 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Successfully started WorkflowActor-8a56905f-5f6e-4eb1-b445-0c032ec6ee37
2018-08-11 03:04:24,809 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Starting workflow UUID(4045c6cf-7886-4c5b-b4ee-de418b52c5e0)
2018-08-11 03:04:24,809 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Successfully started WorkflowActor-4045c6cf-7886-4c5b-b4ee-de418b52c5e0
2018-08-11 03:04:24,813 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Starting workflow UUID(e237159a-ed02-4493-9dc3-d6dad533a21c)
2018-08-11 03:04:24,814 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor Successfully started WorkflowActor-e237159a-ed02-4493-9dc3-d6dad533a21c
2018-08-11 03:04:24,814 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - Retrieved 8 workflows from the WorkflowStoreActor
- should successfully run draft3_nested_struct (55 seconds, 102 milliseconds)
2018-08-11 03:04:32,867 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(d18fbada)]: Parsing workflow as WDL draft-2
2018-08-11 03:04:32,867 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - MaterializeWorkflowDescriptorActor [UUID(eb2bbf62)]: Parsing workflow as WDL draft-2
2018-08-11 03:04:32,867 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor WorkflowActor-03623b51-49d1-4dd1-a156-75c8afdb3ba3 is in a terminal state: WorkflowSucceededState
2018-08-11 03:04:32,909 cromwell-system-akka.dispatchers.engine-dispatcher-25 ERROR - WorkflowManagerActor Workflow d18fbada-0555-4e80-a08e-bcc4d4d9ba8d failed (during MaterializingWorkflowDescriptorState): cromwell.engine.workflow.lifecycle.materialization.MaterializeWorkflowDescriptorActor$$anon$1: Workflow input processing failed:
ERROR: Call supplied an unexpected input: The 'hello_task' task doesn't have an input called 'asdf':
asdf=foo
^
Options:
- Add the input 'asdf' to the 'hello_task' task (defined on line 3).
- Remove 'asdf = ...' from hello_task's inputs (on line 36).
at cromwell.engine.workflow.lifecycle.materialization.MaterializeWorkflowDescriptorActor.cromwell$engine$workflow$lifecycle$materialization$MaterializeWorkflowDescriptorActor$$workflowInitializationFailed(MaterializeWorkflowDescriptorActor.scala:209)
at cromwell.engine.workflow.lifecycle.materialization.MaterializeWorkflowDescriptorActor$$anonfun$2.applyOrElse(MaterializeWorkflowDescriptorActor.scala:179)
at cromwell.engine.workflow.lifecycle.materialization.MaterializeWorkflowDescriptorActor$$anonfun$2.applyOrElse(MaterializeWorkflowDescriptorActor.scala:174)
at scala.runtime.AbstractPartialFunction.apply(AbstractPartialFunction.scala:34)
at akka.actor.FSM.processEvent(FSM.scala:670)
at akka.actor.FSM.processEvent$(FSM.scala:667)
at cromwell.engine.workflow.lifecycle.materialization.MaterializeWorkflowDescriptorActor.akka$actor$LoggingFSM$$super$processEvent(MaterializeWorkflowDescriptorActor.scala:132)
at akka.actor.LoggingFSM.processEvent(FSM.scala:806)
at akka.actor.LoggingFSM.processEvent$(FSM.scala:788)
at cromwell.engine.workflow.lifecycle.materialization.MaterializeWorkflowDescriptorActor.processEvent(MaterializeWorkflowDescriptorActor.scala:132)
at akka.actor.FSM.akka$actor$FSM$$processMsg(FSM.scala:664)
at akka.actor.FSM$$anonfun$receive$1.applyOrElse(FSM.scala:658)
at akka.actor.Actor.aroundReceive(Actor.scala:517)
at akka.actor.Actor.aroundReceive$(Actor.scala:515)
at cromwell.engine.workflow.lifecycle.materialization.MaterializeWorkflowDescriptorActor.aroundReceive(MaterializeWorkflowDescriptorActor.scala:132)
at akka.actor.ActorCell.receiveMessage(ActorCell.scala:588)
at akka.actor.ActorCell.invoke(ActorCell.scala:557)
at akka.dispatch.Mailbox.processMailbox(Mailbox.scala:258)
at akka.dispatch.Mailbox.run(Mailbox.scala:225)
at akka.dispatch.Mailbox.exec(Mailbox.scala:235)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:04:32,909 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor WorkflowActor-d18fbada-0555-4e80-a08e-bcc4d4d9ba8d is in a terminal state: WorkflowFailedState
2018-08-11 03:04:32,923 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - MaterializeWorkflowDescriptorActor [UUID(eb2bbf62)]: Call-to-Backend assignments: wf_hello.hello -> Papi
2018-08-11 03:04:32,951 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - MaterializeWorkflowDescriptorActor [UUID(4045c6cf)]: Parsing workflow as CWL v1.0
2018-08-11 03:04:32,951 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(f019fed2)]: Parsing workflow as WDL 1.0
2018-08-11 03:04:32,957 INFO - Pre-Processing /tmp/4045c6cf-7886-4c5b-b4ee-de418b52c5e0.temp.6346354821750737270/4045c6cf-7886-4c5b-b4ee-de418b52c5e0.cwl
2018-08-11 03:04:32,978 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(f019fed2)]: Call-to-Backend assignments:
2018-08-11 03:04:33,045 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowManagerActor WorkflowActor-af95ce90-ac96-4235-8254-98dd5f53878d is in a terminal state: WorkflowSucceededState
2018-08-11 03:04:33,152 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(8d1c0d0f)]: Parsing workflow as WDL draft-2
2018-08-11 03:04:33,192 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(e237159a)]: Parsing workflow as CWL v1.0
2018-08-11 03:04:33,199 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(8d1c0d0f)]: Call-to-Backend assignments: docker_hash_dockerhub.dockerWithoutHost -> Papi, docker_hash_dockerhub.defaultRegistryHost -> Papi, docker_hash_dockerhub.implicitRegistryHost -> Papi
2018-08-11 03:04:33,204 INFO - Pre-Processing /tmp/e237159a-ed02-4493-9dc3-d6dad533a21c.temp.8917872141437228228/e237159a-ed02-4493-9dc3-d6dad533a21c.cwl
2018-08-11 03:04:33,265 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - MaterializeWorkflowDescriptorActor [UUID(2d13b86b)]: Parsing workflow as WDL draft-2
2018-08-11 03:04:33,299 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - MaterializeWorkflowDescriptorActor [UUID(2d13b86b)]: Call-to-Backend assignments: retry_for_me.broken_task -> Papi
2018-08-11 03:04:33,322 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(8a56905f)]: Parsing workflow as WDL Biscayne
2018-08-11 03:04:33,398 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - MaterializeWorkflowDescriptorActor [UUID(8a56905f)]: Call-to-Backend assignments: default_default.default_default_task -> Papi
2018-08-11 03:04:33,730 cromwell-system-akka.actor.default-dispatcher-28 INFO - Message [akka.actor.TimerSchedulerImpl$TimerMsg] without sender to Actor[akka://cromwell-system/user/cromwell-service/WorkflowManagerActor/WorkflowActor-888d0319-3bb4-422c-b4ec-ad5c23729330#-1985832472] was not delivered. [1] dead letters encountered, no more dead letters will be logged. If this is not an expected behavior, then [Actor[akka://cromwell-system/user/cromwell-service/WorkflowManagerActor/WorkflowActor-888d0319-3bb4-422c-b4ec-ad5c23729330#-1985832472]] may have terminated unexpectedly, This logging can be turned off or adjusted with configuration settings 'akka.log-dead-letters' and 'akka.log-dead-letters-during-shutdown'.
- should successfully run draft3_infer_version (55 seconds, 134 milliseconds)
2018-08-11 03:04:35,401 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - MaterializeWorkflowDescriptorActor [UUID(4045c6cf)]: Call-to-Backend assignments: hello -> Papi
2018-08-11 03:04:35,431 cromwell-system-akka.dispatchers.engine-dispatcher-31 ERROR - WorkflowManagerActor Workflow e1d30b20-1660-4ed6-93df-6455c2ca6573 failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673)
at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264)
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291)
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250)
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981)
at com.google.api.client.auth.oauth2.TokenRequest.executeUnparsed(TokenRequest.java:283)
at com.google.api.client.auth.oauth2.TokenRequest.execute(TokenRequest.java:307)
at com.google.api.client.googleapis.auth.oauth2.GoogleCredential.executeRefreshToken(GoogleCredential.java:394)
at com.google.api.client.auth.oauth2.Credential.refreshToken(Credential.java:489)
at com.google.api.client.auth.oauth2.Credential.intercept(Credential.java:217)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:868)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469)
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101)
at scala.Option.map(Option.scala:146)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121)
at scala.util.Success.$anonfun$map$1(Try.scala:251)
at scala.util.Success.map(Try.scala:209)
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288)
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29)
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:04:35,497 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor WorkflowActor-e1d30b20-1660-4ed6-93df-6455c2ca6573 is in a terminal state: WorkflowFailedState
2018-08-11 03:04:35,582 cromwell-system-akka.dispatchers.backend-dispatcher-43 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(5b027489)array_io.mk_file:2:1]: `echo "file-2" > i`
2018-08-11 03:04:35,647 cromwell-system-akka.dispatchers.backend-dispatcher-75 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(8f4fec30)prefix.pfx:NA:1]: `echo "-e k1=v1 -e k2=v2 -e k3=v3"`
2018-08-11 03:04:35,780 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowExecutionActor-6648fdb1-fdf1-4996-82c5-4b8ef24674a7 [UUID(6648fdb1)]: Starting curl_wf.newsgrab
2018-08-11 03:04:35,812 cromwell-system-akka.dispatchers.backend-dispatcher-76 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(a2d48a30)I_hope_nobody_names_workflows_like_this_as_it_seems_very_unnecessary_.my_task_aliased:NA:1]: `sleep 1`
2018-08-11 03:04:36,092 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(e237159a)]: Call-to-Backend assignments: wc -> Papi, ps -> Papi, cgrep -> Papi
2018-08-11 03:04:36,126 cromwell-system-akka.dispatchers.engine-dispatcher-31 ERROR - WorkflowManagerActor Workflow d017c0dd-f210-431f-907a-a2b7b899101b failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673)
at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264)
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291)
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250)
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981)
at com.google.api.client.auth.oauth2.TokenRequest.executeUnparsed(TokenRequest.java:283)
at com.google.api.client.auth.oauth2.TokenRequest.execute(TokenRequest.java:307)
at com.google.api.client.googleapis.auth.oauth2.GoogleCredential.executeRefreshToken(GoogleCredential.java:394)
at com.google.api.client.auth.oauth2.Credential.refreshToken(Credential.java:489)
at com.google.api.client.auth.oauth2.Credential.intercept(Credential.java:217)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:868)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469)
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101)
at scala.Option.map(Option.scala:146)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121)
at scala.util.Success.$anonfun$map$1(Try.scala:251)
at scala.util.Success.map(Try.scala:209)
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288)
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29)
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:04:36,147 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor WorkflowActor-d017c0dd-f210-431f-907a-a2b7b899101b is in a terminal state: WorkflowFailedState
2018-08-11 03:04:36,176 cromwell-system-akka.dispatchers.backend-dispatcher-71 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(848807ee)dont_cache_to_failed_jobs.failing_task:NA:1]: `# C'est nul !
exit 1`
2018-08-11 03:04:36,350 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowExecutionActor-e7ee3d80-1371-462a-b9e4-7f47b3d3e72a [UUID(e7ee3d80)]: Starting invalidate_bad_caches.make_file
2018-08-11 03:04:36,356 cromwell-system-akka.dispatchers.backend-dispatcher-93 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(5b027489)array_io.mk_file:1:1]: `echo "file-1" > i`
2018-08-11 03:04:36,460 cromwell-system-akka.dispatchers.backend-dispatcher-82 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(fa2c07dd)foo_wf.add5:NA:1]: `echo $((5 + 100))`
2018-08-11 03:04:36,550 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowExecutionActor-12075b5a-0b94-4d41-9c8d-a7296ca9c123 [UUID(12075b5a)]: Starting optional_declarations.strings2
2018-08-11 03:04:36,592 cromwell-system-akka.dispatchers.engine-dispatcher-30 ERROR - WorkflowManagerActor Workflow 35961b0c-6e06-4d55-8dac-6f62ccea217b failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673)
at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264)
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291)
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250)
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981)
at com.google.api.client.auth.oauth2.TokenRequest.executeUnparsed(TokenRequest.java:283)
at com.google.api.client.auth.oauth2.TokenRequest.execute(TokenRequest.java:307)
at com.google.api.client.googleapis.auth.oauth2.GoogleCredential.executeRefreshToken(GoogleCredential.java:394)
at com.google.api.client.auth.oauth2.Credential.refreshToken(Credential.java:489)
at com.google.api.client.auth.oauth2.Credential.intercept(Credential.java:217)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:868)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469)
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101)
at scala.Option.map(Option.scala:146)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121)
at scala.util.Success.$anonfun$map$1(Try.scala:251)
at scala.util.Success.map(Try.scala:209)
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288)
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29)
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:04:36,593 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor WorkflowActor-35961b0c-6e06-4d55-8dac-6f62ccea217b is in a terminal state: WorkflowFailedState
2018-08-11 03:04:36,620 cromwell-system-akka.dispatchers.backend-dispatcher-88 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(7f63eea1)cont_while_possible_scatter.odd_numbers_only:1:1]: `if [ $((1%2)) -eq 0 ]; then
exit 1;
fi`
2018-08-11 03:04:36,668 cromwell-system-akka.dispatchers.backend-dispatcher-88 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(7f63eea1)cont_while_possible_scatter.odd_numbers_only:0:1]: `if [ $((0%2)) -eq 0 ]; then
exit 1;
fi`
2018-08-11 03:04:36,684 cromwell-system-akka.dispatchers.backend-dispatcher-88 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(7f63eea1)cont_while_possible_scatter.odd_numbers_only:2:1]: `if [ $((2%2)) -eq 0 ]; then
exit 1;
fi`
2018-08-11 03:04:36,803 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowExecutionActor-4c8e6262-97b0-44ce-9c03-88729f6d29b8 [UUID(4c8e6262)]: Starting wf.read_map
2018-08-11 03:04:36,830 cromwell-system-akka.dispatchers.backend-dispatcher-93 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(5b027489)array_io.mk_file:0:1]: `echo "file-0" > i`
2018-08-11 03:04:36,850 cromwell-system-akka.dispatchers.backend-dispatcher-93 WARN - PipelinesApiAsyncBackendJobExecutionActor [UUID(e7ee3d80)invalidate_bad_caches.make_file:NA:1]: Unrecognized runtime attribute keys: backend
2018-08-11 03:04:36,860 cromwell-system-akka.dispatchers.backend-dispatcher-93 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(e7ee3d80)invalidate_bad_caches.make_file:NA:1]: `echo woohoo > out.txt`
2018-08-11 03:04:36,890 cromwell-system-akka.dispatchers.backend-dispatcher-88 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(6de9f48d)restart_while_failing.B:NA:1]: Status change from - to Success
2018-08-11 03:04:36,904 cromwell-system-akka.dispatchers.backend-dispatcher-76 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(45af4273)ifs_in_scatters.validate_int:0:1]: Status change from - to Running
2018-08-11 03:04:36,914 cromwell-system-akka.dispatchers.backend-dispatcher-88 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(c0cc1872)file_outputs_from_input_wf.file_outputs_from_input:NA:1]: `echo "foo" > ___something___
echo "bar" > ___anything___
echo "baz" > ___nothing___.txt`
2018-08-11 03:04:36,936 cromwell-system-akka.dispatchers.backend-dispatcher-76 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(45af4273)ifs_in_scatters.validate_int:3:1]: Status change from - to Running
2018-08-11 03:04:36,998 cromwell-system-akka.dispatchers.backend-dispatcher-93 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(12075b5a)optional_declarations.strings2:NA:1]: `# no-op`
2018-08-11 03:04:37,022 cromwell-system-akka.dispatchers.backend-dispatcher-93 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(c1865d4c)wf_hello.hello:NA:1]: `echo "Hello sub world!"`
2018-08-11 03:04:37,044 cromwell-system-akka.dispatchers.backend-dispatcher-88 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(8afdcac0)local_gcs.makeGcsFileInJes:NA:1]: `echo "I am writing stuff" > out`
2018-08-11 03:04:37,071 cromwell-system-akka.dispatchers.backend-dispatcher-88 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(c29e23a5)echo_wf.echo:NA:1]: `echo "world" > foobar.txt
echo "2" > 2.txt`
2018-08-11 03:04:37,141 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowExecutionActor-05f3189b-60be-4251-a662-4a7130e3db57 [UUID(05f3189b)]: Starting iwdr_input_string
2018-08-11 03:04:37,318 cromwell-system-akka.dispatchers.api-dispatcher-65 INFO - WDL (1.0) workflow 1cb1da13-e8cb-4944-ba85-28bf36a6b208 submitted
2018-08-11 03:04:37,390 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - 1 new workflows fetched
2018-08-11 03:04:37,390 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor Starting workflow UUID(1cb1da13-e8cb-4944-ba85-28bf36a6b208)
2018-08-11 03:04:37,390 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor Successfully started WorkflowActor-1cb1da13-e8cb-4944-ba85-28bf36a6b208
2018-08-11 03:04:37,390 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - Retrieved 1 workflows from the WorkflowStoreActor
2018-08-11 03:04:37,430 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowExecutionActor-509baaba-9260-416c-9ee9-b3dc29276eb3 [UUID(509baaba)]: Starting struct_localize_delocalize.struct_delocalize
2018-08-11 03:04:37,541 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowExecutionActor-7c349a44-4eca-448d-9a02-114da3e0cd45 [UUID(7c349a44)]: Starting callable_imports.my_task
2018-08-11 03:04:37,582 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowExecutionActor-12075b5a-0b94-4d41-9c8d-a7296ca9c123 [UUID(12075b5a)]: Starting optional_declarations.strings
2018-08-11 03:04:37,594 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(1cb1da13)]: Parsing workflow as WDL 1.0
2018-08-11 03:04:37,601 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowExecutionActor-180d67b5-fabb-480f-8676-d2eea500799b [UUID(180d67b5)]: Starting writeToCache.print
2018-08-11 03:04:37,601 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowExecutionActor-4ce7acb7-1ae4-462d-a95e-ffec8e13ace8 [UUID(4ce7acb7)]: Starting floating_tags.echo, floating_tags.echoAgain
2018-08-11 03:04:37,690 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - MaterializeWorkflowDescriptorActor [UUID(1cb1da13)]: Call-to-Backend assignments: draft3_size_of_optionals.size_in_task_places -> Papi, draft3_size_of_optionals.scattered_conditional_file_making -> Papi, draft3_size_of_optionals.dont_make_a_file -> Papi, draft3_size_of_optionals.make_a_file -> Papi
2018-08-11 03:04:37,730 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowExecutionActor-91d6d48d-3a01-4ce3-ac67-f6b6f22a059c [UUID(91d6d48d)]: Starting foo_wf.add5
2018-08-11 03:04:37,812 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowExecutionActor-6508de0e-3a2a-41fa-9b02-b92212090765 [UUID(6508de0e)]: Starting gpu_on_papi.task_with_tesla_p100, gpu_on_papi.task_with_tesla_k80
2018-08-11 03:04:37,820 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowExecutionActor-4c8e6262-97b0-44ce-9c03-88729f6d29b8 [UUID(4c8e6262)]: Starting wf.write_map
2018-08-11 03:04:37,840 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowExecutionActor-f2920645-5e3b-4310-825c-50f1225cf9b7 [UUID(f2920645)]: Starting cwl-cache-between-workflows.step-average
2018-08-11 03:04:37,850 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowExecutionActor-6dff21b8-2de9-4cd4-94a7-3217ea2dade1 [UUID(6dff21b8)]: Starting draft3_omitting_outputs.foo
2018-08-11 03:04:38,071 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowExecutionActor-f019fed2-8f38-449b-8871-3b2a6331a780 [UUID(f019fed2)]: Workflow declaration_chain complete. Final Outputs:
{
"declaration_chain.z": 5
}
2018-08-11 03:04:38,160 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowExecutionActor-970888c3-bda2-4314-9f29-97b938e0da7b [UUID(970888c3)]: Starting array_literal_locations.array_literal_locations_i
2018-08-11 03:04:38,201 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowExecutionActor-3e3717bf-63ed-4398-a812-6236dc6a5c9d [UUID(3e3717bf)]: Condition NOT met: 'false'. Bypassing conditional section
2018-08-11 03:04:38,201 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowExecutionActor-17529c55-58df-45ff-bd0b-b100d1d903b9 [UUID(17529c55)]: Starting custom_mount_point.t
2018-08-11 03:04:38,201 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowExecutionActor-3e3717bf-63ed-4398-a812-6236dc6a5c9d [UUID(3e3717bf)]: Condition met: 'true'. Running conditional section
2018-08-11 03:04:38,201 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowExecutionActor-b3b9e784-da75-4ce1-a627-40eaeb4a0c65 [UUID(b3b9e784)]: Starting optional_declarations.strings
2018-08-11 03:04:38,310 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowExecutionActor-57af2395-af84-4d67-9146-27bd93d745f9 [UUID(57af2395)]: Starting cwl-cache-within-workflow.foo
2018-08-11 03:04:38,470 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowExecutionActor-468f5a17-28ba-48a3-b3cc-61a3d1ab7fe3 [UUID(468f5a17)]: Condition met: 'true'. Running conditional section
2018-08-11 03:04:38,472 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowExecutionActor-468f5a17-28ba-48a3-b3cc-61a3d1ab7fe3 [UUID(468f5a17)]: Condition NOT met: 'false'. Bypassing conditional section
2018-08-11 03:04:38,510 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowExecutionActor-1522d1c5-a39b-4ad6-a2a2-4291d4b968e1 [UUID(1522d1c5)]: Starting test.echo_str
2018-08-11 03:04:38,623 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - WorkflowManagerActor WorkflowActor-f019fed2-8f38-449b-8871-3b2a6331a780 is in a terminal state: WorkflowSucceededState
2018-08-11 03:04:38,750 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - MaterializeWorkflowDescriptorActor [UUID(cd413a7b)]: Call-to-Backend assignments:
2018-08-11 03:04:38,870 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowExecutionActor-6dff21b8-2de9-4cd4-94a7-3217ea2dade1 [UUID(6dff21b8)]: Condition met: 'true'. Running conditional section
2018-08-11 03:04:39,401 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowExecutionActor-d224abcb-8f46-4c3d-b78d-af3614e67e64 [UUID(d224abcb)]: Starting sizeenginefunction.make_a_file (3 shards)
2018-08-11 03:04:39,490 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowExecutionActor-468f5a17-28ba-48a3-b3cc-61a3d1ab7fe3 [UUID(468f5a17)]: Starting simple_if.runMeTrue
2018-08-11 03:04:39,641 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowExecutionActor-df597859-2612-4fb7-acc2-40bfef9dfe69 [UUID(df597859)]: Starting size_wf.size_task
2018-08-11 03:04:39,927 cromwell-system-akka.dispatchers.api-dispatcher-68 INFO - Unspecified type (Unspecified version) workflow 179eedca-a4f0-4362-8f01-937e31577ffd submitted
2018-08-11 03:04:40,201 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowExecutionActor-970888c3-bda2-4314-9f29-97b938e0da7b [UUID(970888c3)]: Starting array_literal_locations.array_literal_locations_ii (3 shards)
2018-08-11 03:04:40,389 cromwell-system-akka.dispatchers.backend-dispatcher-93 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(7f63eea1)cont_while_possible_scatter.odd_numbers_only:3:1]: `if [ $((3%2)) -eq 0 ]; then
exit 1;
fi`
2018-08-11 03:04:40,402 cromwell-system-akka.dispatchers.backend-dispatcher-82 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(7c349a44)callable_imports.my_task:NA:1]: `echo -n "foo" | wc | awk ' { print $3 } '`
2018-08-11 03:04:40,407 cromwell-system-akka.dispatchers.backend-dispatcher-93 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(91d6d48d)foo_wf.add5:NA:1]: `echo $((5 + 100))`
2018-08-11 03:04:40,563 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - 1 new workflows fetched
2018-08-11 03:04:40,563 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Starting workflow UUID(179eedca-a4f0-4362-8f01-937e31577ffd)
2018-08-11 03:04:40,564 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor Successfully started WorkflowActor-179eedca-a4f0-4362-8f01-937e31577ffd
2018-08-11 03:04:40,564 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - Retrieved 1 workflows from the WorkflowStoreActor
2018-08-11 03:04:40,581 cromwell-system-akka.dispatchers.backend-dispatcher-75 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(12075b5a)optional_declarations.strings:NA:1]: `# no-op`
2018-08-11 03:04:40,623 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - bf1364ae-769c-45c1-b2f2-5b26917f3887-SubWorkflowActor-SubWorkflow-sudecls:-1:1 [UUID(bf1364ae)]: Starting sub_decls.first_task
2018-08-11 03:04:40,640 cromwell-system-akka.dispatchers.engine-dispatcher-31 ERROR - WorkflowManagerActor Workflow 08ce6481-a38f-4406-b3a1-6b44c21695dd failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673)
at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264)
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291)
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250)
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981)
at com.google.api.client.auth.oauth2.TokenRequest.executeUnparsed(TokenRequest.java:283)
at com.google.api.client.auth.oauth2.TokenRequest.execute(TokenRequest.java:307)
at com.google.api.client.googleapis.auth.oauth2.GoogleCredential.executeRefreshToken(GoogleCredential.java:394)
at com.google.api.client.auth.oauth2.Credential.refreshToken(Credential.java:489)
at com.google.api.client.auth.oauth2.Credential.intercept(Credential.java:217)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:868)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469)
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101)
at scala.Option.map(Option.scala:146)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121)
at scala.util.Success.$anonfun$map$1(Try.scala:251)
at scala.util.Success.map(Try.scala:209)
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288)
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29)
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:04:40,648 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor WorkflowActor-08ce6481-a38f-4406-b3a1-6b44c21695dd is in a terminal state: WorkflowFailedState
2018-08-11 03:04:40,831 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowExecutionActor-cd413a7b-1835-4a8f-87c7-7df351a5c649 [UUID(cd413a7b)]: Workflow input_expressions complete. Final Outputs:
{
"input_expressions.wf_out": 256.0
}
2018-08-11 03:04:40,891 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - MaterializeWorkflowDescriptorActor [UUID(179eedca)]: Parsing workflow as WDL draft-2
2018-08-11 03:04:40,891 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor WorkflowActor-cd413a7b-1835-4a8f-87c7-7df351a5c649 is in a terminal state: WorkflowSucceededState
2018-08-11 03:04:40,913 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - MaterializeWorkflowDescriptorActor [UUID(179eedca)]: Call-to-Backend assignments: wf.blah -> Papi
2018-08-11 03:04:41,234 cromwell-system-akka.dispatchers.backend-dispatcher-77 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(12d310ee)iwdr_inline_file:NA:1]: `'python3' 'prime_sieve.py' '100'`
2018-08-11 03:04:41,249 cromwell-system-akka.dispatchers.engine-dispatcher-34 ERROR - WorkflowManagerActor Workflow bcf2af35-0d99-4072-ab0c-5f1a64fac90b failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673)
at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264)
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291)
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250)
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981)
at com.google.api.client.auth.oauth2.TokenRequest.executeUnparsed(TokenRequest.java:283)
at com.google.api.client.auth.oauth2.TokenRequest.execute(TokenRequest.java:307)
at com.google.api.client.googleapis.auth.oauth2.GoogleCredential.executeRefreshToken(GoogleCredential.java:394)
at com.google.api.client.auth.oauth2.Credential.refreshToken(Credential.java:489)
at com.google.api.client.auth.oauth2.Credential.intercept(Credential.java:217)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:868)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469)
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101)
at scala.Option.map(Option.scala:146)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121)
at scala.util.Success.$anonfun$map$1(Try.scala:251)
at scala.util.Success.map(Try.scala:209)
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288)
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29)
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:04:41,250 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor WorkflowActor-bcf2af35-0d99-4072-ab0c-5f1a64fac90b is in a terminal state: WorkflowFailedState
2018-08-11 03:04:41,264 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - 0303e48f-978e-4110-9c59-10d9002bf5ff-SubWorkflowActor-SubWorkflow-ifs_in_scatters_in_truth:-1:1 [UUID(0303e48f)]: Starting ifs_in_scatters.init
2018-08-11 03:04:41,276 cromwell-system-akka.dispatchers.backend-dispatcher-93 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(d224abcb)sizeenginefunction.make_a_file:2:1]: `echo "hey look here's a file" > a_file`
2018-08-11 03:04:41,446 cromwell-system-akka.dispatchers.backend-dispatcher-88 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(180d67b5)writeToCache.print:NA:1]: `echo "She sells sea shells by the sea shore only on $(date)"`
2018-08-11 03:04:41,483 cromwell-system-akka.dispatchers.backend-dispatcher-82 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(970888c3)array_literal_locations.array_literal_locations_i:NA:1]: `
echo 0:1:2 > out`
2018-08-11 03:04:41,511 cromwell-system-akka.dispatchers.backend-dispatcher-88 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(6648fdb1)curl_wf.newsgrab:NA:1]: `curl -# http://www.bbc.com/news > news`
2018-08-11 03:04:41,519 cromwell-system-akka.dispatchers.backend-dispatcher-88 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(970888c3)array_literal_locations.array_literal_locations_ii:2:1]: `
echo 2 > out`
2018-08-11 03:04:41,533 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowExecutionActor-8a56905f-5f6e-4eb1-b445-0c032ec6ee37 [UUID(8a56905f)]: Starting default_default.default_default_task
2018-08-11 03:04:41,566 cromwell-system-akka.dispatchers.backend-dispatcher-77 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(6dff21b8)draft3_omitting_outputs.foo:NA:1]: `echo hi`
2018-08-11 03:04:41,928 cromwell-system-akka.dispatchers.api-dispatcher-68 INFO - CWL (v1.0) workflow a98c35e2-4292-488b-9249-87f65394470e submitted
2018-08-11 03:04:42,102 cromwell-system-akka.dispatchers.backend-dispatcher-82 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(1522d1c5)test.echo_str:NA:1]: `
echo bar 2 left`
2018-08-11 03:04:42,192 cromwell-system-akka.dispatchers.backend-dispatcher-77 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(8610dbc7)wf_hello.hello:NA:1]: job id: projects/broad-dsde-cromwell-dev/operations/9493235542016133234
2018-08-11 03:04:42,192 cromwell-system-akka.dispatchers.backend-dispatcher-77 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(b3b9e784)optional_declarations.strings:NA:1]: ``
2018-08-11 03:04:42,192 cromwell-system-akka.dispatchers.backend-dispatcher-77 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(3605344c)requester_pays_localization.localize:NA:1]: job id: projects/broad-dsde-cromwell-dev/operations/14055412535053357157
2018-08-11 03:04:42,213 cromwell-system-akka.dispatchers.backend-dispatcher-37 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(5b027489)array_io.serialize:NA:1]: `cat /cromwell_root/cloud-cromwell-dev/cromwell_execution/travis/array_io/5b027489-94b7-4705-a43c-e68ff1e0ef52/call-serialize/write_lines_745faba7cec1d9b9680daa9416a9438c.tmp`
2018-08-11 03:04:42,233 cromwell-system-akka.dispatchers.backend-dispatcher-88 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(6508de0e)gpu_on_papi.task_with_tesla_k80:NA:1]: `curl "https://www.googleapis.com/compute/v1/projects/broad-dsde-cromwell-dev/zones/us-central1-c/instances/$(curl -s "http://metadata.google.internal/computeMetadata/v1/instance/name" -H "Metadata-Flavor: Google")?fields=guestAccelerators" -H "Authorization: Bearer $(gcloud auth application-default print-access-token)" -H 'Accept: application/json' --compressed`
2018-08-11 03:04:42,248 cromwell-system-akka.dispatchers.backend-dispatcher-77 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(509baaba)struct_localize_delocalize.struct_delocalize:NA:1]: `echo "BAM BAM BAM BAM BAM" > test.bam
echo "BAI BAI BAI BAI BAI" > test.bam.bai`
2018-08-11 03:04:42,250 cromwell-system-akka.dispatchers.backend-dispatcher-77 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(17529c55)custom_mount_point.t:NA:1]: `echo "bazqux" > some_file
cd /some/mnt
echo "foobar" > some_file`
2018-08-11 03:04:42,251 cromwell-system-akka.dispatchers.engine-dispatcher-25 ERROR - WorkflowManagerActor Workflow d3fbad9b-3fb1-4f7c-866e-cf2568ef76e5 failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673)
at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264)
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291)
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250)
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469)
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101)
at scala.Option.map(Option.scala:146)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121)
at scala.util.Success.$anonfun$map$1(Try.scala:251)
at scala.util.Success.map(Try.scala:209)
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288)
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29)
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:04:42,252 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowManagerActor WorkflowActor-d3fbad9b-3fb1-4f7c-866e-cf2568ef76e5 is in a terminal state: WorkflowFailedState
2018-08-11 03:04:42,604 ERROR - Test 'successfully run draft3_array_io' with workflow id 'e1d30b20-1660-4ed6-93df-6455c2ca6573' failed on attempt 1 of 3
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26)
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183)
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181)
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138)
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304)
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125)
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70)
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36)
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93)
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93)
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43)
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44)
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284)
at scala.concurrent.Promise.complete(Promise.scala:49)
at scala.concurrent.Promise.complete$(Promise.scala:48)
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183)
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:04:42,633 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - WDL (1.0) workflow 830ac9a6-efdb-47c2-859b-d1b7c779c1bf submitted
2018-08-11 03:04:42,775 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - 2 new workflows fetched
2018-08-11 03:04:42,776 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor Starting workflow UUID(a98c35e2-4292-488b-9249-87f65394470e)
2018-08-11 03:04:42,776 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor Successfully started WorkflowActor-a98c35e2-4292-488b-9249-87f65394470e
2018-08-11 03:04:42,776 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor Starting workflow UUID(830ac9a6-efdb-47c2-859b-d1b7c779c1bf)
2018-08-11 03:04:42,781 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor Successfully started WorkflowActor-830ac9a6-efdb-47c2-859b-d1b7c779c1bf
2018-08-11 03:04:42,781 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - Retrieved 2 workflows from the WorkflowStoreActor
2018-08-11 03:04:42,849 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(830ac9a6)]: Parsing workflow as WDL 1.0
2018-08-11 03:04:42,852 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - MaterializeWorkflowDescriptorActor [UUID(a98c35e2)]: Parsing workflow as CWL v1.0
2018-08-11 03:04:42,852 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - ad0aad1c-e3b6-4a6c-b736-b3a349177575-SubWorkflowActor-SubWorkflow-subhello:0:1 [UUID(ad0aad1c)]: Starting subhello.hello
2018-08-11 03:04:42,852 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - 0ee37b0c-2217-4361-bb7f-e828742167d1-SubWorkflowActor-SubWorkflow-subhello:2:1 [UUID(0ee37b0c)]: Starting subhello.hello
2018-08-11 03:04:42,853 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - 1e699359-2f17-4d87-a9c2-b4ecb1c931e4-SubWorkflowActor-SubWorkflow-subhello:1:1 [UUID(1e699359)]: Starting subhello.hello
2018-08-11 03:04:42,854 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - 34970377-04c5-4b2a-93e5-5f24b8cf15a8-SubWorkflowActor-SubWorkflow-subhello:3:1 [UUID(34970377)]: Starting subhello.hello
2018-08-11 03:04:42,900 INFO - Pre-Processing /tmp/a98c35e2-4292-488b-9249-87f65394470e.temp.8880008899962316976/a98c35e2-4292-488b-9249-87f65394470e.cwl
2018-08-11 03:04:42,921 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowExecutionActor-8d1c0d0f-33bb-449c-b0dc-53b1d60c42df [UUID(8d1c0d0f)]: Starting docker_hash_dockerhub.defaultRegistryHost, docker_hash_dockerhub.implicitRegistryHost, docker_hash_dockerhub.dockerWithoutHost
2018-08-11 03:04:42,960 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - 7ec6d290-1450-47ca-8c65-f726397a2449-SubWorkflowActor-SubWorkflow-foo2:0:1 [UUID(7ec6d290)]: Starting foo_in_a_box.foo
2018-08-11 03:04:42,980 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - MaterializeWorkflowDescriptorActor [UUID(830ac9a6)]: Call-to-Backend assignments: array_io.concat -> Papi, array_io.mk_file -> Papi, array_io.serialize -> Papi, array_io.count_lines_array -> Papi, array_io.count_lines -> Papi
2018-08-11 03:04:43,027 cromwell-system-akka.dispatchers.engine-dispatcher-32 ERROR - Failed to hash gs://cromwell_bucket_with_requester_pays/lorem ipsum.txt
com.google.cloud.storage.StorageException: centaur@broad-dsde-cromwell-dev.iam.gserviceaccount.com does not have serviceusage.services.use access to project 1005074806481.
at cromwell.engine.io.gcs.GcsBatchCommandContext.cromwell$engine$io$gcs$GcsBatchCommandContext$$onFailureCallback(GcsBatchCommandContext.scala:108)
at cromwell.engine.io.gcs.GcsBatchCommandContext$$anon$1.onFailure(GcsBatchCommandContext.scala:55)
at com.google.api.client.googleapis.batch.json.JsonBatchCallback.onFailure(JsonBatchCallback.java:54)
at com.google.api.client.googleapis.batch.json.JsonBatchCallback.onFailure(JsonBatchCallback.java:50)
at com.google.api.client.googleapis.batch.BatchUnparsedResponse.parseAndCallback(BatchUnparsedResponse.java:223)
at com.google.api.client.googleapis.batch.BatchUnparsedResponse.parseNextResponse(BatchUnparsedResponse.java:155)
at com.google.api.client.googleapis.batch.BatchRequest.execute(BatchRequest.java:253)
at cromwell.engine.io.gcs.GcsBatchFlow.$anonfun$executeBatch$3(GcsBatchFlow.scala:112)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.util.Try$.apply(Try.scala:209)
at cromwell.engine.io.gcs.GcsBatchFlow.executeBatch(GcsBatchFlow.scala:112)
at cromwell.engine.io.gcs.GcsBatchFlow.$anonfun$flow$2(GcsBatchFlow.scala:58)
at akka.stream.impl.fusing.StatefulMapConcat$$anon$30.onPush(Ops.scala:1937)
at akka.stream.impl.fusing.GraphInterpreter.processPush(GraphInterpreter.scala:519)
at akka.stream.impl.fusing.GraphInterpreter.processEvent(GraphInterpreter.scala:482)
at akka.stream.impl.fusing.GraphInterpreter.execute(GraphInterpreter.scala:378)
at akka.stream.impl.fusing.GraphInterpreterShell.runBatch(ActorGraphInterpreter.scala:588)
at akka.stream.impl.fusing.GraphInterpreterShell$AsyncInput.execute(ActorGraphInterpreter.scala:472)
at akka.stream.impl.fusing.GraphInterpreterShell.processEvent(ActorGraphInterpreter.scala:563)
at akka.stream.impl.fusing.ActorGraphInterpreter.akka$stream$impl$fusing$ActorGraphInterpreter$$processEvent(ActorGraphInterpreter.scala:745)
at akka.stream.impl.fusing.ActorGraphInterpreter$$anonfun$receive$1.applyOrElse(ActorGraphInterpreter.scala:760)
at akka.actor.Actor.aroundReceive(Actor.scala:517)
at akka.actor.Actor.aroundReceive$(Actor.scala:515)
at akka.stream.impl.fusing.ActorGraphInterpreter.aroundReceive(ActorGraphInterpreter.scala:670)
at akka.actor.ActorCell.receiveMessage(ActorCell.scala:588)
at akka.actor.ActorCell.invoke(ActorCell.scala:557)
at akka.dispatch.Mailbox.processMailbox(Mailbox.scala:258)
at akka.dispatch.Mailbox.run(Mailbox.scala:225)
at akka.dispatch.Mailbox.exec(Mailbox.scala:235)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:04:43,034 cromwell-system-akka.dispatchers.engine-dispatcher-32 ERROR - 3605344c:requester_pays_localization.localize:-1:1: Hash error, disabling call caching for this job.
com.google.cloud.storage.StorageException: centaur@broad-dsde-cromwell-dev.iam.gserviceaccount.com does not have serviceusage.services.use access to project 1005074806481.
at cromwell.engine.io.gcs.GcsBatchCommandContext.cromwell$engine$io$gcs$GcsBatchCommandContext$$onFailureCallback(GcsBatchCommandContext.scala:108)
at cromwell.engine.io.gcs.GcsBatchCommandContext$$anon$1.onFailure(GcsBatchCommandContext.scala:55)
at com.google.api.client.googleapis.batch.json.JsonBatchCallback.onFailure(JsonBatchCallback.java:54)
at com.google.api.client.googleapis.batch.json.JsonBatchCallback.onFailure(JsonBatchCallback.java:50)
at com.google.api.client.googleapis.batch.BatchUnparsedResponse.parseAndCallback(BatchUnparsedResponse.java:223)
at com.google.api.client.googleapis.batch.BatchUnparsedResponse.parseNextResponse(BatchUnparsedResponse.java:155)
at com.google.api.client.googleapis.batch.BatchRequest.execute(BatchRequest.java:253)
at cromwell.engine.io.gcs.GcsBatchFlow.$anonfun$executeBatch$3(GcsBatchFlow.scala:112)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.util.Try$.apply(Try.scala:209)
at cromwell.engine.io.gcs.GcsBatchFlow.executeBatch(GcsBatchFlow.scala:112)
at cromwell.engine.io.gcs.GcsBatchFlow.$anonfun$flow$2(GcsBatchFlow.scala:58)
at akka.stream.impl.fusing.StatefulMapConcat$$anon$30.onPush(Ops.scala:1937)
at akka.stream.impl.fusing.GraphInterpreter.processPush(GraphInterpreter.scala:519)
at akka.stream.impl.fusing.GraphInterpreter.processEvent(GraphInterpreter.scala:482)
at akka.stream.impl.fusing.GraphInterpreter.execute(GraphInterpreter.scala:378)
at akka.stream.impl.fusing.GraphInterpreterShell.runBatch(ActorGraphInterpreter.scala:588)
at akka.stream.impl.fusing.GraphInterpreterShell$AsyncInput.execute(ActorGraphInterpreter.scala:472)
at akka.stream.impl.fusing.GraphInterpreterShell.processEvent(ActorGraphInterpreter.scala:563)
at akka.stream.impl.fusing.ActorGraphInterpreter.akka$stream$impl$fusing$ActorGraphInterpreter$$processEvent(ActorGraphInterpreter.scala:745)
at akka.stream.impl.fusing.ActorGraphInterpreter$$anonfun$receive$1.applyOrElse(ActorGraphInterpreter.scala:760)
at akka.actor.Actor.aroundReceive(Actor.scala:517)
at akka.actor.Actor.aroundReceive$(Actor.scala:515)
at akka.stream.impl.fusing.ActorGraphInterpreter.aroundReceive(ActorGraphInterpreter.scala:670)
at akka.actor.ActorCell.receiveMessage(ActorCell.scala:588)
at akka.actor.ActorCell.invoke(ActorCell.scala:557)
at akka.dispatch.Mailbox.processMailbox(Mailbox.scala:258)
at akka.dispatch.Mailbox.run(Mailbox.scala:225)
at akka.dispatch.Mailbox.exec(Mailbox.scala:235)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:04:43,042 cromwell-system-akka.dispatchers.backend-dispatcher-37 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(f2920645)cwl-cache-between-workflows.step-average:NA:1]: `echo 11`
2018-08-11 03:04:43,062 cromwell-system-akka.dispatchers.backend-dispatcher-88 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(df597859)size_wf.size_task:NA:1]: `echo "file has size 104636.0"`
2018-08-11 03:04:43,204 cromwell-system-akka.dispatchers.backend-dispatcher-37 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(4c8e6262)wf.read_map:NA:1]: `python <<CODE
map = {'x': 500, 'y': 600, 'z': 700}
print("\\n".join(["{}\\t{}".format(k,v) for k,v in map.items()]))
CODE`
2018-08-11 03:04:43,221 cromwell-system-akka.dispatchers.backend-dispatcher-88 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(d224abcb)sizeenginefunction.make_a_file:0:1]: `echo "hey look here's a file" > a_file`
2018-08-11 03:04:43,227 cromwell-system-akka.dispatchers.backend-dispatcher-82 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(8a56905f)default_default.default_default_task:NA:1]: `echo "x: '' y: ''"`
2018-08-11 03:04:43,238 cromwell-system-akka.dispatchers.backend-dispatcher-88 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(4ce7acb7)floating_tags.echo:NA:1]: `echo "Peter Piper picked a peck of pickled peppers"`
2018-08-11 03:04:43,247 cromwell-system-akka.dispatchers.backend-dispatcher-88 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(bf1364ae)sub_decls.first_task:NA:1]: `echo foo`
2018-08-11 03:04:43,309 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - 0303e48f-978e-4110-9c59-10d9002bf5ff-SubWorkflowActor-SubWorkflow-ifs_in_scatters_in_truth:-1:1 [UUID(0303e48f)]: Starting ifs_in_scatters.validate_int (5 shards)
2018-08-11 03:04:43,941 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowExecutionActor-6de9f48d-48df-41b7-be56-a22257793872 [UUID(6de9f48d)]: Starting restart_while_failing.B1
2018-08-11 03:04:44,204 ERROR - Test 'successfully run draft3_globs' with workflow id '35961b0c-6e06-4d55-8dac-6f62ccea217b' failed on attempt 1 of 3
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26)
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183)
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181)
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138)
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304)
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125)
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70)
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36)
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93)
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93)
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43)
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44)
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284)
at scala.concurrent.Promise.complete(Promise.scala:49)
at scala.concurrent.Promise.complete$(Promise.scala:48)
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183)
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:04:44,230 cromwell-system-akka.dispatchers.api-dispatcher-65 INFO - WDL (1.0) workflow b36006b1-dc8c-4a0c-bbd1-7dda75061770 submitted
2018-08-11 03:04:44,515 cromwell-system-akka.dispatchers.backend-dispatcher-93 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(4c8e6262)wf.write_map:NA:1]: `cat /cromwell_root/cloud-cromwell-dev/cromwell_execution/travis/wf/4c8e6262-97b0-44ce-9c03-88729f6d29b8/call-write_map/write_map_6006324d6cd2dfef3e8053eda2187f08.tmp`
2018-08-11 03:04:44,590 cromwell-system-akka.dispatchers.engine-dispatcher-32 ERROR - WorkflowManagerActor Workflow 9f289b57-a9fe-4508-b98d-561979521498 failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673)
at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264)
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291)
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250)
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981)
at com.google.api.client.auth.oauth2.TokenRequest.executeUnparsed(TokenRequest.java:283)
at com.google.api.client.auth.oauth2.TokenRequest.execute(TokenRequest.java:307)
at com.google.api.client.googleapis.auth.oauth2.GoogleCredential.executeRefreshToken(GoogleCredential.java:394)
at com.google.api.client.auth.oauth2.Credential.refreshToken(Credential.java:489)
at com.google.api.client.auth.oauth2.Credential.intercept(Credential.java:217)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:868)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469)
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101)
at scala.Option.map(Option.scala:146)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121)
at scala.util.Success.$anonfun$map$1(Try.scala:251)
at scala.util.Success.map(Try.scala:209)
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288)
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29)
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:04:44,590 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - WorkflowManagerActor WorkflowActor-9f289b57-a9fe-4508-b98d-561979521498 is in a terminal state: WorkflowFailedState
2018-08-11 03:04:44,598 cromwell-system-akka.dispatchers.backend-dispatcher-82 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(d224abcb)sizeenginefunction.make_a_file:1:1]: `echo "hey look here's a file" > a_file`
2018-08-11 03:04:44,611 ERROR - Test 'successfully run sub_workflow_interactions_scatter' with workflow id '08ce6481-a38f-4406-b3a1-6b44c21695dd' failed on attempt 1 of 3
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26)
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183)
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181)
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138)
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304)
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125)
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70)
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36)
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93)
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93)
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43)
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44)
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284)
at scala.concurrent.Promise.complete(Promise.scala:49)
at scala.concurrent.Promise.complete$(Promise.scala:48)
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183)
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:04:44,636 cromwell-system-akka.dispatchers.backend-dispatcher-77 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(970888c3)array_literal_locations.array_literal_locations_ii:0:1]: `
echo 0 > out`
2018-08-11 03:04:44,640 cromwell-system-akka.dispatchers.api-dispatcher-65 INFO - Unspecified type (Unspecified version) workflow 3113a7e4-2c70-4d7a-91ea-caca846086ed submitted
2018-08-11 03:04:44,666 cromwell-system-akka.dispatchers.backend-dispatcher-37 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(0303e48f)ifs_in_scatters.validate_int:1:1]: `echo $(( 1 % 2 ))`
2018-08-11 03:04:44,726 cromwell-system-akka.dispatchers.backend-dispatcher-88 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(ad0aad1c)subhello.hello:NA:1]: ``
2018-08-11 03:04:44,734 cromwell-system-akka.dispatchers.backend-dispatcher-82 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(0303e48f)ifs_in_scatters.validate_int:4:1]: `echo $(( 4 % 2 ))`
2018-08-11 03:04:44,760 cromwell-system-akka.dispatchers.backend-dispatcher-88 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(4ce7acb7)floating_tags.echoAgain:NA:1]: `echo "Peter Piper picked a peck of pickled peppers"`
2018-08-11 03:04:44,771 cromwell-system-akka.dispatchers.backend-dispatcher-88 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(8d1c0d0f)docker_hash_dockerhub.defaultRegistryHost:NA:1]: `echo "hello"`
2018-08-11 03:04:44,782 cromwell-system-akka.dispatchers.backend-dispatcher-88 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(6508de0e)gpu_on_papi.task_with_tesla_p100:NA:1]: `curl "https://www.googleapis.com/compute/v1/projects/broad-dsde-cromwell-dev/zones/us-central1-c/instances/$(curl -s "http://metadata.google.internal/computeMetadata/v1/instance/name" -H "Metadata-Flavor: Google")?fields=guestAccelerators" -H "Authorization: Bearer $(gcloud auth application-default print-access-token)" -H 'Accept: application/json' --compressed`
2018-08-11 03:04:45,067 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - 2 new workflows fetched
2018-08-11 03:04:45,072 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowManagerActor Starting workflow UUID(b36006b1-dc8c-4a0c-bbd1-7dda75061770)
2018-08-11 03:04:45,072 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowManagerActor Successfully started WorkflowActor-b36006b1-dc8c-4a0c-bbd1-7dda75061770
2018-08-11 03:04:45,072 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowManagerActor Starting workflow UUID(3113a7e4-2c70-4d7a-91ea-caca846086ed)
2018-08-11 03:04:45,072 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowManagerActor Successfully started WorkflowActor-3113a7e4-2c70-4d7a-91ea-caca846086ed
2018-08-11 03:04:45,072 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - Retrieved 2 workflows from the WorkflowStoreActor
2018-08-11 03:04:45,371 INFO - Pre-Processing /tmp/a98c35e2-4292-488b-9249-87f65394470e.temp.8880008899962316976/three_step.cwl
- should fail during execution bad_docker_name (2 minutes, 15 seconds)
2018-08-11 03:04:45,888 cromwell-system-akka.dispatchers.api-dispatcher-65 INFO - Unspecified type (Unspecified version) workflow 5e79e206-6475-4bd0-b71a-18ec3e90fd72 submitted
- should fail during execution missing_sub_inputs (45 seconds, 150 milliseconds)
2018-08-11 03:04:46,728 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - MaterializeWorkflowDescriptorActor [UUID(a98c35e2)]: Call-to-Backend assignments: ps -> Papi, cgrep -> Papi, wc -> Papi
2018-08-11 03:04:48,209 cromwell-system-akka.dispatchers.api-dispatcher-68 INFO - Unspecified type (Unspecified version) workflow a6912259-ff00-45de-99cb-7406da4163f8 submitted
2018-08-11 03:04:48,559 cromwell-system-akka.dispatchers.api-dispatcher-68 INFO - Unspecified type (Unspecified version) workflow 8ce72840-3dd0-42e4-872d-f42fd86bf88c submitted
- should successfully run biscayne_as_map_et_al (1 minute, 45 seconds)
2018-08-11 03:04:51,235 ERROR - Test 'successfully run cwl_scatter_wf1' with workflow id 'bcf2af35-0d99-4072-ab0c-5f1a64fac90b' failed on attempt 1 of 3
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26)
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183)
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181)
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138)
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304)
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125)
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70)
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36)
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93)
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93)
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43)
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44)
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284)
at scala.concurrent.Promise.complete(Promise.scala:49)
at scala.concurrent.Promise.complete$(Promise.scala:48)
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183)
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:04:51,278 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - CWL (v1.0) workflow 0a8e6122-856b-400f-bfc3-efce791876be submitted
2018-08-11 03:04:53,454 ERROR - Test 'successfully run globbingBehavior' with workflow id 'd3fbad9b-3fb1-4f7c-866e-cf2568ef76e5' failed on attempt 1 of 3
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26)
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183)
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181)
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138)
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304)
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125)
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70)
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36)
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93)
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93)
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43)
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44)
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284)
at scala.concurrent.Promise.complete(Promise.scala:49)
at scala.concurrent.Promise.complete$(Promise.scala:48)
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183)
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:04:53,475 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - Unspecified type (Unspecified version) workflow 10910c51-059b-4005-8e2a-df517096a8f2 submitted
2018-08-11 03:04:53,794 cromwell-system-akka.dispatchers.backend-dispatcher-73 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(0303e48f)ifs_in_scatters.init:NA:1]: `echo 1`
Metadata mismatch for 9f289b57-a9fe-4508-b98d-561979521498 - retrying
2018-08-11 03:04:55,357 cromwell-system-akka.dispatchers.backend-dispatcher-63 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(0303e48f)ifs_in_scatters.validate_int:3:1]: `echo $(( 3 % 2 ))`
2018-08-11 03:04:55,372 cromwell-system-akka.dispatchers.backend-dispatcher-83 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(970888c3)array_literal_locations.array_literal_locations_ii:1:1]: `
echo 1 > out`
2018-08-11 03:04:55,373 cromwell-system-akka.dispatchers.engine-dispatcher-32 ERROR - WorkflowManagerActor Workflow 9885fa07-3820-45d9-8d28-a2c9bcd351f6 failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673)
at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264)
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291)
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250)
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981)
at com.google.api.client.auth.oauth2.TokenRequest.executeUnparsed(TokenRequest.java:283)
at com.google.api.client.auth.oauth2.TokenRequest.execute(TokenRequest.java:307)
at com.google.api.client.googleapis.auth.oauth2.GoogleCredential.executeRefreshToken(GoogleCredential.java:394)
at com.google.api.client.auth.oauth2.Credential.refreshToken(Credential.java:489)
at com.google.api.client.auth.oauth2.Credential.intercept(Credential.java:217)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:868)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469)
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101)
at scala.Option.map(Option.scala:146)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121)
at scala.util.Success.$anonfun$map$1(Try.scala:251)
at scala.util.Success.map(Try.scala:209)
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288)
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29)
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:04:55,374 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - WorkflowManagerActor WorkflowActor-9885fa07-3820-45d9-8d28-a2c9bcd351f6 is in a terminal state: WorkflowFailedState
2018-08-11 03:04:55,485 cromwell-system-akka.dispatchers.engine-dispatcher-30 ERROR - WorkflowManagerActor Workflow 20e4ae72-496d-4b38-be24-845cea7aadad failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673)
at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264)
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291)
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250)
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981)
at com.google.api.client.auth.oauth2.TokenRequest.executeUnparsed(TokenRequest.java:283)
at com.google.api.client.auth.oauth2.TokenRequest.execute(TokenRequest.java:307)
at com.google.api.client.googleapis.auth.oauth2.GoogleCredential.executeRefreshToken(GoogleCredential.java:394)
at com.google.api.client.auth.oauth2.Credential.refreshToken(Credential.java:489)
at com.google.api.client.auth.oauth2.Credential.intercept(Credential.java:217)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:868)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469)
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101)
at scala.Option.map(Option.scala:146)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121)
at scala.util.Success.$anonfun$map$1(Try.scala:251)
at scala.util.Success.map(Try.scala:209)
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288)
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29)
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:04:55,485 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor WorkflowActor-20e4ae72-496d-4b38-be24-845cea7aadad is in a terminal state: WorkflowFailedState
2018-08-11 03:04:55,505 cromwell-system-akka.dispatchers.backend-dispatcher-72 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(57af2395)cwl-cache-within-workflow.foo:NA:1]: `echo 16.23381791021144`
2018-08-11 03:04:55,515 cromwell-system-akka.dispatchers.engine-dispatcher-33 ERROR - WorkflowManagerActor Workflow 2a33a921-66f8-4534-ab8d-bb9cbc388882 failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673)
at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264)
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291)
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250)
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981)
at com.google.api.client.auth.oauth2.TokenRequest.executeUnparsed(TokenRequest.java:283)
at com.google.api.client.auth.oauth2.TokenRequest.execute(TokenRequest.java:307)
at com.google.api.client.googleapis.auth.oauth2.GoogleCredential.executeRefreshToken(GoogleCredential.java:394)
at com.google.api.client.auth.oauth2.Credential.refreshToken(Credential.java:489)
at com.google.api.client.auth.oauth2.Credential.intercept(Credential.java:217)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:868)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469)
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101)
at scala.Option.map(Option.scala:146)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121)
at scala.util.Success.$anonfun$map$1(Try.scala:251)
at scala.util.Success.map(Try.scala:209)
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288)
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29)
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:04:55,515 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowManagerActor WorkflowActor-2a33a921-66f8-4534-ab8d-bb9cbc388882 is in a terminal state: WorkflowFailedState
2018-08-11 03:04:55,520 cromwell-system-akka.dispatchers.backend-dispatcher-72 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(6de9f48d)restart_while_failing.B1:NA:1]: `sleep 600
exit 0`
2018-08-11 03:04:55,527 cromwell-system-akka.dispatchers.backend-dispatcher-72 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(34970377)subhello.hello:NA:1]: ``
2018-08-11 03:04:55,535 cromwell-system-akka.dispatchers.backend-dispatcher-72 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(1e699359)subhello.hello:NA:1]: ``
2018-08-11 03:04:55,549 cromwell-system-akka.dispatchers.engine-dispatcher-31 ERROR - WorkflowManagerActor Workflow c9359ca2-3b35-46c3-9f8d-69f196f8c234 failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673)
at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264)
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291)
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250)
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981)
at com.google.api.client.auth.oauth2.TokenRequest.executeUnparsed(TokenRequest.java:283)
at com.google.api.client.auth.oauth2.TokenRequest.execute(TokenRequest.java:307)
at com.google.api.client.googleapis.auth.oauth2.GoogleCredential.executeRefreshToken(GoogleCredential.java:394)
at com.google.api.client.auth.oauth2.Credential.refreshToken(Credential.java:489)
at com.google.api.client.auth.oauth2.Credential.intercept(Credential.java:217)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:868)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469)
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101)
at scala.Option.map(Option.scala:146)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121)
at scala.util.Success.$anonfun$map$1(Try.scala:251)
at scala.util.Success.map(Try.scala:209)
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288)
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29)
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:04:55,549 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor WorkflowActor-c9359ca2-3b35-46c3-9f8d-69f196f8c234 is in a terminal state: WorkflowFailedState
2018-08-11 03:04:55,617 cromwell-system-akka.dispatchers.engine-dispatcher-25 ERROR - WorkflowManagerActor Workflow 36f3b181-a6ca-4bba-8122-5921681f9c30 failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673)
at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264)
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291)
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250)
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981)
at com.google.api.client.auth.oauth2.TokenRequest.executeUnparsed(TokenRequest.java:283)
at com.google.api.client.auth.oauth2.TokenRequest.execute(TokenRequest.java:307)
at com.google.api.client.googleapis.auth.oauth2.GoogleCredential.executeRefreshToken(GoogleCredential.java:394)
at com.google.api.client.auth.oauth2.Credential.refreshToken(Credential.java:489)
at com.google.api.client.auth.oauth2.Credential.intercept(Credential.java:217)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:868)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469)
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101)
at scala.Option.map(Option.scala:146)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121)
at scala.util.Success.$anonfun$map$1(Try.scala:251)
at scala.util.Success.map(Try.scala:209)
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288)
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29)
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:04:55,622 cromwell-system-akka.dispatchers.backend-dispatcher-72 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(7ec6d290)foo_in_a_box.foo:NA:1]: `echo hi`
2018-08-11 03:04:55,622 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - WorkflowManagerActor WorkflowActor-36f3b181-a6ca-4bba-8122-5921681f9c30 is in a terminal state: WorkflowFailedState
2018-08-11 03:04:55,647 cromwell-system-akka.dispatchers.backend-dispatcher-74 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(0303e48f)ifs_in_scatters.validate_int:2:1]: `echo $(( 2 % 2 ))`
2018-08-11 03:04:55,672 cromwell-system-akka.dispatchers.backend-dispatcher-78 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(468f5a17)simple_if.runMeTrue:NA:1]: `echo "done"`
2018-08-11 03:04:55,732 cromwell-system-akka.dispatchers.backend-dispatcher-39 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(0303e48f)ifs_in_scatters.validate_int:0:1]: `echo $(( 0 % 2 ))`
2018-08-11 03:04:55,759 cromwell-system-akka.dispatchers.engine-dispatcher-6 ERROR - WorkflowManagerActor Workflow e156075b-3665-4f74-a3d6-0e5b0a2c7c14 failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673)
at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264)
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291)
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250)
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469)
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101)
at scala.Option.map(Option.scala:146)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121)
at scala.util.Success.$anonfun$map$1(Try.scala:251)
at scala.util.Success.map(Try.scala:209)
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288)
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29)
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:04:55,759 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor WorkflowActor-e156075b-3665-4f74-a3d6-0e5b0a2c7c14 is in a terminal state: WorkflowFailedState
2018-08-11 03:04:55,759 cromwell-system-akka.dispatchers.engine-dispatcher-6 ERROR - WorkflowManagerActor Workflow 142ef04d-5716-4eee-9c6d-6450d8b1d241 failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673)
at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264)
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291)
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250)
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981)
at com.google.api.client.auth.oauth2.TokenRequest.executeUnparsed(TokenRequest.java:283)
at com.google.api.client.auth.oauth2.TokenRequest.execute(TokenRequest.java:307)
at com.google.api.client.googleapis.auth.oauth2.GoogleCredential.executeRefreshToken(GoogleCredential.java:394)
at com.google.api.client.auth.oauth2.Credential.refreshToken(Credential.java:489)
at com.google.api.client.auth.oauth2.Credential.intercept(Credential.java:217)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:868)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469)
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101)
at scala.Option.map(Option.scala:146)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121)
at scala.util.Success.$anonfun$map$1(Try.scala:251)
at scala.util.Success.map(Try.scala:209)
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288)
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29)
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:04:55,762 cromwell-system-akka.dispatchers.backend-dispatcher-84 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(8d1c0d0f)docker_hash_dockerhub.dockerWithoutHost:NA:1]: `echo "hello"`
2018-08-11 03:04:55,762 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowManagerActor WorkflowActor-142ef04d-5716-4eee-9c6d-6450d8b1d241 is in a terminal state: WorkflowFailedState
2018-08-11 03:04:55,771 cromwell-system-akka.dispatchers.engine-dispatcher-33 ERROR - WorkflowManagerActor Workflow 2081df5a-e04e-44d1-927d-922925d318c2 failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673)
at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264)
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291)
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250)
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981)
at com.google.api.client.auth.oauth2.TokenRequest.executeUnparsed(TokenRequest.java:283)
at com.google.api.client.auth.oauth2.TokenRequest.execute(TokenRequest.java:307)
at com.google.api.client.googleapis.auth.oauth2.GoogleCredential.executeRefreshToken(GoogleCredential.java:394)
at com.google.api.client.auth.oauth2.Credential.refreshToken(Credential.java:489)
at com.google.api.client.auth.oauth2.Credential.intercept(Credential.java:217)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:868)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469)
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101)
at scala.Option.map(Option.scala:146)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121)
at scala.util.Success.$anonfun$map$1(Try.scala:251)
at scala.util.Success.map(Try.scala:209)
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288)
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29)
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:04:55,772 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowManagerActor WorkflowActor-2081df5a-e04e-44d1-927d-922925d318c2 is in a terminal state: WorkflowFailedState
2018-08-11 03:04:55,776 cromwell-system-akka.dispatchers.backend-dispatcher-84 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(0ee37b0c)subhello.hello:NA:1]: ``
2018-08-11 03:04:55,953 cromwell-system-akka.dispatchers.engine-dispatcher-25 ERROR - WorkflowManagerActor Workflow 7956ba9d-3aa5-4817-bbbc-87615e22e697 failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673)
at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264)
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291)
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250)
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469)
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101)
at scala.Option.map(Option.scala:146)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121)
at scala.util.Success.$anonfun$map$1(Try.scala:251)
at scala.util.Success.map(Try.scala:209)
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288)
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29)
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:04:55,955 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor WorkflowActor-7956ba9d-3aa5-4817-bbbc-87615e22e697 is in a terminal state: WorkflowFailedState
2018-08-11 03:04:55,976 cromwell-system-akka.dispatchers.engine-dispatcher-25 ERROR - WorkflowManagerActor Workflow 7a9803d4-b4f5-45f9-aad9-3193335b7129 failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673)
at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264)
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291)
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250)
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981)
at com.google.api.client.auth.oauth2.TokenRequest.executeUnparsed(TokenRequest.java:283)
at com.google.api.client.auth.oauth2.TokenRequest.execute(TokenRequest.java:307)
at com.google.api.client.googleapis.auth.oauth2.GoogleCredential.executeRefreshToken(GoogleCredential.java:394)
at com.google.api.client.auth.oauth2.Credential.refreshToken(Credential.java:489)
at com.google.api.client.auth.oauth2.Credential.intercept(Credential.java:217)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:868)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469)
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101)
at scala.Option.map(Option.scala:146)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121)
at scala.util.Success.$anonfun$map$1(Try.scala:251)
at scala.util.Success.map(Try.scala:209)
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288)
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29)
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:04:55,986 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor WorkflowActor-7a9803d4-b4f5-45f9-aad9-3193335b7129 is in a terminal state: WorkflowFailedState
2018-08-11 03:04:56,008 cromwell-system-akka.dispatchers.engine-dispatcher-25 ERROR - WorkflowManagerActor Workflow 3d659be9-2e78-400b-82cf-7bc586b2145e failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673)
at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264)
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291)
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250)
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469)
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101)
at scala.Option.map(Option.scala:146)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121)
at scala.util.Success.$anonfun$map$1(Try.scala:251)
at scala.util.Success.map(Try.scala:209)
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288)
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29)
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:04:56,009 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor WorkflowActor-3d659be9-2e78-400b-82cf-7bc586b2145e is in a terminal state: WorkflowFailedState
2018-08-11 03:04:56,065 cromwell-system-akka.dispatchers.engine-dispatcher-6 ERROR - WorkflowManagerActor Workflow b70ad92d-5860-45a4-a065-4bbf8cc38519 failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673)
at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264)
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291)
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250)
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981)
at com.google.api.client.auth.oauth2.TokenRequest.executeUnparsed(TokenRequest.java:283)
at com.google.api.client.auth.oauth2.TokenRequest.execute(TokenRequest.java:307)
at com.google.api.client.googleapis.auth.oauth2.GoogleCredential.executeRefreshToken(GoogleCredential.java:394)
at com.google.api.client.auth.oauth2.Credential.refreshToken(Credential.java:489)
at com.google.api.client.auth.oauth2.Credential.intercept(Credential.java:217)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:868)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469)
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101)
at scala.Option.map(Option.scala:146)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121)
at scala.util.Success.$anonfun$map$1(Try.scala:251)
at scala.util.Success.map(Try.scala:209)
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288)
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29)
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:04:56,066 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowManagerActor WorkflowActor-b70ad92d-5860-45a4-a065-4bbf8cc38519 is in a terminal state: WorkflowFailedState
2018-08-11 03:04:56,178 cromwell-system-akka.dispatchers.engine-dispatcher-31 ERROR - WorkflowManagerActor Workflow 349a0c37-10db-40da-9337-b26ba7d3773a failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673)
at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264)
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291)
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250)
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469)
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101)
at scala.Option.map(Option.scala:146)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121)
at scala.util.Success.$anonfun$map$1(Try.scala:251)
at scala.util.Success.map(Try.scala:209)
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288)
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29)
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:04:56,179 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor WorkflowActor-349a0c37-10db-40da-9337-b26ba7d3773a is in a terminal state: WorkflowFailedState
2018-08-11 03:04:56,255 cromwell-system-akka.dispatchers.engine-dispatcher-6 ERROR - WorkflowManagerActor Workflow 4f46f274-d37a-4080-b792-f7c7d1e4ec38 failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673)
at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264)
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291)
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250)
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469)
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101)
at scala.Option.map(Option.scala:146)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121)
at scala.util.Success.$anonfun$map$1(Try.scala:251)
at scala.util.Success.map(Try.scala:209)
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288)
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29)
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:04:56,258 cromwell-system-akka.dispatchers.engine-dispatcher-6 INFO - WorkflowManagerActor WorkflowActor-4f46f274-d37a-4080-b792-f7c7d1e4ec38 is in a terminal state: WorkflowFailedState
2018-08-11 03:04:56,305 cromwell-system-akka.dispatchers.engine-dispatcher-30 ERROR - WorkflowManagerActor Workflow ec50b955-8811-4810-ba70-f44000e9704c failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673)
at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264)
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291)
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250)
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981)
at com.google.api.client.auth.oauth2.TokenRequest.executeUnparsed(TokenRequest.java:283)
at com.google.api.client.auth.oauth2.TokenRequest.execute(TokenRequest.java:307)
at com.google.api.client.googleapis.auth.oauth2.GoogleCredential.executeRefreshToken(GoogleCredential.java:394)
at com.google.api.client.auth.oauth2.Credential.refreshToken(Credential.java:489)
at com.google.api.client.auth.oauth2.Credential.intercept(Credential.java:217)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:868)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469)
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101)
at scala.Option.map(Option.scala:146)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121)
at scala.util.Success.$anonfun$map$1(Try.scala:251)
at scala.util.Success.map(Try.scala:209)
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288)
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29)
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:04:56,306 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor WorkflowActor-ec50b955-8811-4810-ba70-f44000e9704c is in a terminal state: WorkflowFailedState
2018-08-11 03:04:56,313 cromwell-system-akka.dispatchers.engine-dispatcher-34 ERROR - WorkflowManagerActor Workflow 5aee7025-daea-49ef-97fc-8355f508563d failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673)
at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264)
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291)
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250)
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469)
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101)
at scala.Option.map(Option.scala:146)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121)
at scala.util.Success.$anonfun$map$1(Try.scala:251)
at scala.util.Success.map(Try.scala:209)
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288)
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29)
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:04:56,313 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor WorkflowActor-5aee7025-daea-49ef-97fc-8355f508563d is in a terminal state: WorkflowFailedState
2018-08-11 03:04:56,551 cromwell-system-akka.dispatchers.engine-dispatcher-33 ERROR - WorkflowManagerActor Workflow 01b6dcd8-938f-4c09-b89c-46c044a5a885 failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673)
at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264)
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291)
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250)
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981)
at com.google.api.client.auth.oauth2.TokenRequest.executeUnparsed(TokenRequest.java:283)
at com.google.api.client.auth.oauth2.TokenRequest.execute(TokenRequest.java:307)
at com.google.api.client.googleapis.auth.oauth2.GoogleCredential.executeRefreshToken(GoogleCredential.java:394)
at com.google.api.client.auth.oauth2.Credential.refreshToken(Credential.java:489)
at com.google.api.client.auth.oauth2.Credential.intercept(Credential.java:217)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:868)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469)
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101)
at scala.Option.map(Option.scala:146)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121)
at scala.util.Success.$anonfun$map$1(Try.scala:251)
at scala.util.Success.map(Try.scala:209)
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288)
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29)
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:04:56,551 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowManagerActor WorkflowActor-01b6dcd8-938f-4c09-b89c-46c044a5a885 is in a terminal state: WorkflowFailedState
Metadata mismatch for 9f289b57-a9fe-4508-b98d-561979521498 - retrying
- should successfully run input_expressions (1 minute, 55 seconds)
2018-08-11 03:04:56,557 cromwell-system-akka.dispatchers.engine-dispatcher-31 ERROR - WorkflowManagerActor Workflow 3be432f1-c4f3-4e1e-ad60-dbf04d97e1bf failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673)
at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264)
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291)
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250)
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981)
at com.google.api.client.auth.oauth2.TokenRequest.executeUnparsed(TokenRequest.java:283)
at com.google.api.client.auth.oauth2.TokenRequest.execute(TokenRequest.java:307)
at com.google.api.client.googleapis.auth.oauth2.GoogleCredential.executeRefreshToken(GoogleCredential.java:394)
at com.google.api.client.auth.oauth2.Credential.refreshToken(Credential.java:489)
at com.google.api.client.auth.oauth2.Credential.intercept(Credential.java:217)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:868)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469)
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101)
at scala.Option.map(Option.scala:146)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121)
at scala.util.Success.$anonfun$map$1(Try.scala:251)
at scala.util.Success.map(Try.scala:209)
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288)
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29)
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:04:56,557 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor WorkflowActor-3be432f1-c4f3-4e1e-ad60-dbf04d97e1bf is in a terminal state: WorkflowFailedState
2018-08-11 03:04:56,583 cromwell-system-akka.dispatchers.engine-dispatcher-32 ERROR - WorkflowManagerActor Workflow b89dd9bd-74c6-4f6e-8487-844be5fb23d9 failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673)
at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264)
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291)
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250)
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981)
at com.google.api.client.auth.oauth2.TokenRequest.executeUnparsed(TokenRequest.java:283)
at com.google.api.client.auth.oauth2.TokenRequest.execute(TokenRequest.java:307)
at com.google.api.client.googleapis.auth.oauth2.GoogleCredential.executeRefreshToken(GoogleCredential.java:394)
at com.google.api.client.auth.oauth2.Credential.refreshToken(Credential.java:489)
at com.google.api.client.auth.oauth2.Credential.intercept(Credential.java:217)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:868)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469)
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101)
at scala.Option.map(Option.scala:146)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121)
at scala.util.Success.$anonfun$map$1(Try.scala:251)
at scala.util.Success.map(Try.scala:209)
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288)
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29)
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:04:56,589 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO - WorkflowManagerActor WorkflowActor-b89dd9bd-74c6-4f6e-8487-844be5fb23d9 is in a terminal state: WorkflowFailedState
2018-08-11 03:04:56,713 cromwell-system-akka.dispatchers.backend-dispatcher-90 WARN - 1 failures (from 4 requests) fetching JES statuses: connect timed out
2018-08-11 03:04:56,742 cromwell-system-akka.dispatchers.engine-dispatcher-33 INFO - WorkflowExecutionActor-179eedca-a4f0-4362-8f01-937e31577ffd [UUID(179eedca)]: Starting wf.blah
2018-08-11 03:04:57,109 cromwell-system-akka.dispatchers.engine-dispatcher-31 ERROR - WorkflowManagerActor Workflow 0e656752-aaad-4e45-9121-5b4c13ad7568 failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673)
at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264)
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291)
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250)
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469)
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101)
at scala.Option.map(Option.scala:146)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121)
at scala.util.Success.$anonfun$map$1(Try.scala:251)
at scala.util.Success.map(Try.scala:209)
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288)
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29)
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:04:57,110 cromwell-system-akka.dispatchers.engine-dispatcher-31 INFO - WorkflowManagerActor WorkflowActor-0e656752-aaad-4e45-9121-5b4c13ad7568 is in a terminal state: WorkflowFailedState
2018-08-11 03:04:57,201 ERROR - Test 'successfully run draft3_custom_mount_point' with workflow id '20e4ae72-496d-4b38-be24-845cea7aadad' failed on attempt 1 of 3
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26)
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183)
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181)
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138)
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304)
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125)
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70)
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36)
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93)
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93)
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43)
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44)
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284)
at scala.concurrent.Promise.complete(Promise.scala:49)
at scala.concurrent.Promise.complete$(Promise.scala:48)
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183)
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:04:57,231 cromwell-system-akka.dispatchers.api-dispatcher-64 INFO - Unspecified type (Unspecified version) workflow cb1e96d3-dec2-464d-bb08-8a8dd384e63b submitted
2018-08-11 03:04:58,395 ERROR - Test 'successfully run continue_on_return_code' with workflow id 'b89dd9bd-74c6-4f6e-8487-844be5fb23d9' failed on attempt 1 of 3
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26)
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183)
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181)
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138)
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304)
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125)
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70)
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36)
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93)
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93)
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43)
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44)
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284)
at scala.concurrent.Promise.complete(Promise.scala:49)
at scala.concurrent.Promise.complete$(Promise.scala:48)
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183)
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:04:58,418 cromwell-system-akka.dispatchers.api-dispatcher-68 INFO - Unspecified type (Unspecified version) workflow b308af86-310a-40b9-b3b6-16f78d40daf5 submitted
2018-08-11 03:04:58,565 ERROR - Test 'successfully run read_write_json' with workflow id '36f3b181-a6ca-4bba-8122-5921681f9c30' failed on attempt 2 of 3
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26)
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183)
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181)
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138)
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304)
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125)
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70)
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36)
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93)
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93)
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43)
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44)
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284)
at scala.concurrent.Promise.complete(Promise.scala:49)
at scala.concurrent.Promise.complete$(Promise.scala:48)
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183)
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:04:58,586 cromwell-system-akka.dispatchers.api-dispatcher-67 INFO - Unspecified type (Unspecified version) workflow 8d81cea7-e7ab-4323-a430-5b63f88ec250 submitted
Metadata mismatch for 9f289b57-a9fe-4508-b98d-561979521498 - retrying
2018-08-11 03:04:59,632 cromwell-system-akka.dispatchers.engine-dispatcher-34 ERROR - WorkflowManagerActor Workflow 4045c6cf-7886-4c5b-b4ee-de418b52c5e0 failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673)
at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264)
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291)
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250)
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469)
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101)
at scala.Option.map(Option.scala:146)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121)
at scala.util.Success.$anonfun$map$1(Try.scala:251)
at scala.util.Success.map(Try.scala:209)
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288)
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29)
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:04:59,632 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowManagerActor WorkflowActor-4045c6cf-7886-4c5b-b4ee-de418b52c5e0 is in a terminal state: WorkflowFailedState
2018-08-11 03:04:59,754 cromwell-system-akka.dispatchers.backend-dispatcher-90 INFO - PipelinesApiAsyncBackendJobExecutionActor [UUID(e7ee3d80)invalidate_bad_caches.make_file:NA:1]: job id: projects/broad-dsde-cromwell-dev/operations/14897655148719503925
Metadata mismatch for 9f289b57-a9fe-4508-b98d-561979521498 - retrying
2018-08-11 03:05:00,977 cromwell-system-akka.dispatchers.engine-dispatcher-34 ERROR - WorkflowManagerActor Workflow e237159a-ed02-4493-9dc3-d6dad533a21c failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673)
at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264)
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291)
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250)
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469)
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101)
at scala.Option.map(Option.scala:146)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121)
at scala.util.Success.$anonfun$map$1(Try.scala:251)
at scala.util.Success.map(Try.scala:209)
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288)
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29)
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:05:00,978 cromwell-system-akka.dispatchers.engine-dispatcher-34 INFO - WorkflowManagerActor WorkflowActor-e237159a-ed02-4493-9dc3-d6dad533a21c is in a terminal state: WorkflowFailedState
2018-08-11 03:05:01,033 ERROR - Test 'successfully run monitoring_log' with workflow id '9885fa07-3820-45d9-8d28-a2c9bcd351f6' failed on attempt 1 of 3
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26)
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183)
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181)
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138)
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304)
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125)
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70)
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36)
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93)
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93)
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43)
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44)
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284)
at scala.concurrent.Promise.complete(Promise.scala:49)
at scala.concurrent.Promise.complete$(Promise.scala:48)
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183)
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:05:01,034 cromwell-system-akka.dispatchers.engine-dispatcher-25 ERROR - WorkflowManagerActor Workflow eb2bbf62-e6c4-4864-a109-55b70b728ff0 failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673)
at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264)
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291)
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250)
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469)
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101)
at scala.Option.map(Option.scala:146)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121)
at scala.util.Success.$anonfun$map$1(Try.scala:251)
at scala.util.Success.map(Try.scala:209)
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288)
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29)
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:05:01,035 cromwell-system-akka.dispatchers.engine-dispatcher-25 INFO - WorkflowManagerActor WorkflowActor-eb2bbf62-e6c4-4864-a109-55b70b728ff0 is in a terminal state: WorkflowFailedState
2018-08-11 03:05:01,078 cromwell-system-akka.dispatchers.api-dispatcher-61 INFO - Unspecified type (Unspecified version) workflow ac058ce0-c67f-4652-9530-b7647780146d submitted
2018-08-11 03:05:01,327 ERROR - Test 'successfully run declarations' with workflow id '4f46f274-d37a-4080-b792-f7c7d1e4ec38' failed on attempt 2 of 3
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26)
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183)
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181)
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138)
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304)
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125)
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70)
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36)
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93)
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93)
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43)
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44)
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284)
at scala.concurrent.Promise.complete(Promise.scala:49)
at scala.concurrent.Promise.complete$(Promise.scala:48)
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183)
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:05:01,369 cromwell-system-akka.dispatchers.api-dispatcher-61 INFO - Unspecified type (Unspecified version) workflow f9be5e27-22a0-43a3-89b2-61c0fe27cb02 submitted
2018-08-11 03:05:01,445 ERROR - Test 'successfully run hello_cwl' with workflow id '4045c6cf-7886-4c5b-b4ee-de418b52c5e0' failed on attempt 2 of 3
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26)
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183)
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181)
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138)
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304)
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125)
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70)
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36)
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93)
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93)
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43)
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44)
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284)
at scala.concurrent.Promise.complete(Promise.scala:49)
at scala.concurrent.Promise.complete$(Promise.scala:48)
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183)
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:05:01,488 cromwell-system-akka.dispatchers.engine-dispatcher-30 ERROR - WorkflowManagerActor Workflow 2d13b86b-b39f-4bd1-bbbc-861fe998bf3b failed (during InitializingWorkflowState): java.net.SocketTimeoutException: connect timed out
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673)
at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264)
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291)
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(HttpsURLConnectionImpl.java:250)
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:77)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:981)
at com.google.api.client.auth.oauth2.TokenRequest.executeUnparsed(TokenRequest.java:283)
at com.google.api.client.auth.oauth2.TokenRequest.execute(TokenRequest.java:307)
at com.google.api.client.googleapis.auth.oauth2.GoogleCredential.executeRefreshToken(GoogleCredential.java:394)
at com.google.api.client.auth.oauth2.Credential.refreshToken(Credential.java:489)
at com.google.api.client.auth.oauth2.Credential.intercept(Credential.java:217)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:868)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469)
at cromwell.cloudsupport.gcp.auth.GoogleAuthMode$.encryptKms(GoogleAuthMode.scala:83)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$10(PipelinesApiInitializationActor.scala:101)
at scala.Option.map(Option.scala:146)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$8(PipelinesApiInitializationActor.scala:100)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$7(PipelinesApiInitializationActor.scala:99)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$privateDockerEncryptedToken$6(PipelinesApiInitializationActor.scala:98)
at scala.Option.flatMap(Option.scala:171)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken$lzycompute(PipelinesApiInitializationActor.scala:97)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.privateDockerEncryptedToken(PipelinesApiInitializationActor.scala:65)
at cromwell.backend.google.pipelines.common.PipelinesApiInitializationActor.$anonfun$initializationData$3(PipelinesApiInitializationActor.scala:121)
at scala.util.Success.$anonfun$map$1(Try.scala:251)
at scala.util.Success.map(Try.scala:209)
at scala.concurrent.Future.$anonfun$map$1(Future.scala:288)
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29)
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:05:01,489 cromwell-system-akka.dispatchers.engine-dispatcher-30 INFO - WorkflowManagerActor WorkflowActor-2d13b86b-b39f-4bd1-bbbc-861fe998bf3b is in a terminal state: WorkflowFailedState
2018-08-11 03:05:01,510 cromwell-system-akka.dispatchers.api-dispatcher-61 INFO - CWL (v1.0) workflow ff49e311-498b-48f0-958a-ee4d4a1c58ce submitted
2018-08-11 03:05:02,498 ERROR - Test 'successfully run wdl_function_locations' with workflow id 'c9359ca2-3b35-46c3-9f8d-69f196f8c234' failed on attempt 2 of 3
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26)
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183)
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181)
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138)
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304)
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125)
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70)
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36)
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93)
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93)
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43)
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44)
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284)
at scala.concurrent.Promise.complete(Promise.scala:49)
at scala.concurrent.Promise.complete$(Promise.scala:48)
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183)
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:05:02,521 cromwell-system-akka.dispatchers.api-dispatcher-64 INFO - Unspecified type (Unspecified version) workflow 75347614-6bcf-484c-96bd-f68f4d579ac4 submitted
- should successfully run draft3_taskless_engine_functions (1 minute, 35 seconds)
Metadata mismatch for 9f289b57-a9fe-4508-b98d-561979521498 - retrying
2018-08-11 03:05:03,111 ERROR - Test 'successfully run dontglobinputs' with workflow id '5aee7025-daea-49ef-97fc-8355f508563d' failed on attempt 1 of 3
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26)
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183)
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181)
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138)
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304)
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125)
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70)
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36)
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93)
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93)
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43)
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44)
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284)
at scala.concurrent.Promise.complete(Promise.scala:49)
at scala.concurrent.Promise.complete$(Promise.scala:48)
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183)
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:05:03,143 cromwell-system-akka.dispatchers.api-dispatcher-64 INFO - Unspecified type (Unspecified version) workflow 8aed7387-8dcb-45a3-9634-3704415925e1 submitted
2018-08-11 03:05:04,212 ERROR - Test 'successfully run requester_pays_engine_functions' with workflow id '2081df5a-e04e-44d1-927d-922925d318c2' failed on attempt 1 of 3
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26)
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183)
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181)
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138)
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304)
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125)
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70)
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36)
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93)
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93)
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43)
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44)
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284)
at scala.concurrent.Promise.complete(Promise.scala:49)
at scala.concurrent.Promise.complete$(Promise.scala:48)
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183)
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:05:04,256 cromwell-system-akka.dispatchers.api-dispatcher-61 INFO - WDL (1.0) workflow 0d8d3933-0db2-40a6-ba3f-b625511969a8 submitted
2018-08-11 03:05:04,437 ERROR - Test 'successfully run select_functions' with workflow id '2a33a921-66f8-4534-ab8d-bb9cbc388882' failed on attempt 2 of 3
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26)
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183)
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181)
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138)
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304)
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125)
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70)
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36)
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93)
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93)
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43)
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44)
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284)
at scala.concurrent.Promise.complete(Promise.scala:49)
at scala.concurrent.Promise.complete$(Promise.scala:48)
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183)
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:05:04,458 cromwell-system-akka.dispatchers.api-dispatcher-64 INFO - Unspecified type (Unspecified version) workflow bdcbabaa-bf2c-4daf-a886-69004f8aa99e submitted
- should fail during execution valid_labels (1 minute, 5 seconds)
Metadata mismatch for 9f289b57-a9fe-4508-b98d-561979521498 - retrying
2018-08-11 03:05:05,003 ERROR - Test 'successfully run expression_lib_cwl' with workflow id '7956ba9d-3aa5-4817-bbbc-87615e22e697' failed on attempt 2 of 3
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26)
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183)
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181)
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138)
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304)
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125)
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70)
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36)
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93)
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93)
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43)
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44)
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284)
at scala.concurrent.Promise.complete(Promise.scala:49)
at scala.concurrent.Promise.complete$(Promise.scala:48)
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183)
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:05:05,038 cromwell-system-akka.dispatchers.api-dispatcher-64 INFO - CWL (v1.0) workflow 22408e97-19b5-429d-bd4d-dc10cc86a34c submitted
2018-08-11 03:05:05,137 ERROR - Test 'successfully run non_root_default_user' with workflow id '0e656752-aaad-4e45-9121-5b4c13ad7568' failed on attempt 2 of 3
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26)
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183)
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181)
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138)
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304)
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125)
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70)
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36)
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93)
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93)
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43)
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44)
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284)
at scala.concurrent.Promise.complete(Promise.scala:49)
at scala.concurrent.Promise.complete$(Promise.scala:48)
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183)
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:05:05,185 cromwell-system-akka.dispatchers.api-dispatcher-64 INFO - Unspecified type (Unspecified version) workflow def15f7e-b065-4444-be5f-c7170e966b22 submitted
2018-08-11 03:05:05,273 ERROR - Test 'successfully run complex_types_files' with workflow id '142ef04d-5716-4eee-9c6d-6450d8b1d241' failed on attempt 1 of 3
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26)
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183)
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181)
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138)
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304)
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125)
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70)
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36)
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93)
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93)
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43)
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44)
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284)
at scala.concurrent.Promise.complete(Promise.scala:49)
at scala.concurrent.Promise.complete$(Promise.scala:48)
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183)
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:05:05,329 cromwell-system-akka.dispatchers.api-dispatcher-64 INFO - Unspecified type (Unspecified version) workflow 5548765e-baf9-43a4-b9fa-d25138d9e09e submitted
2018-08-11 03:05:05,607 WARN - Initiated a temporary lockdown because of exception: Too many requests to Sentry: https://docs.sentry.io/learn/quotas/
2018-08-11 03:05:05,608 ERROR - Test 'successfully run draft3_optional_input_from_scatter' with workflow id 'b70ad92d-5860-45a4-a065-4bbf8cc38519' failed on attempt 1 of 3
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26)
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183)
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181)
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138)
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304)
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125)
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70)
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36)
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93)
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93)
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43)
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44)
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284)
at scala.concurrent.Promise.complete(Promise.scala:49)
at scala.concurrent.Promise.complete$(Promise.scala:48)
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183)
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:05:05,641 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - WDL (1.0) workflow ceaa7b7f-ec98-4811-b4d6-ceb869464874 submitted
2018-08-11 03:05:05,974 WARN - Graceful shutdown took too much time, forcing the shutdown.
2018-08-11 03:05:05,975 WARN - 0 tasks failed to execute before shutdown.
2018-08-11 03:05:05,976 ERROR - Test 'successfully run input_mirror' with workflow id 'ec50b955-8811-4810-ba70-f44000e9704c' failed on attempt 2 of 3
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26)
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183)
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181)
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138)
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304)
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125)
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70)
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36)
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93)
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93)
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43)
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44)
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284)
at scala.concurrent.Promise.complete(Promise.scala:49)
at scala.concurrent.Promise.complete$(Promise.scala:48)
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183)
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:05:06,008 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - Unspecified type (Unspecified version) workflow b06b19be-ef5e-4f29-a338-9b7299086fe5 submitted
2018-08-11 03:05:06,071 WARN - Initiated a temporary lockdown because of exception: {"error":"No JSON data was found"}
2018-08-11 03:05:06,071 ERROR - An exception occurred while sending the event to Sentry.
io.sentry.connection.ConnectionException: {"error":"No JSON data was found"}
at io.sentry.connection.HttpConnection.doSend(HttpConnection.java:216)
at io.sentry.connection.AbstractConnection.send(AbstractConnection.java:76)
at io.sentry.connection.AsyncConnection$EventSubmitter.run(AsyncConnection.java:185)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Caused by: java.net.SocketTimeoutException: connect timed out
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673)
at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264)
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177)
at sun.net.www.protocol.https.HttpsURLConnectionImpl.connect(HttpsURLConnectionImpl.java:153)
at io.sentry.connection.HttpConnection.doSend(HttpConnection.java:168)
... 5 common frames omitted
2018-08-11 03:05:06,234 WARN - Initiated a temporary lockdown because of exception: Too many requests to Sentry: https://docs.sentry.io/learn/quotas/
2018-08-11 03:05:06,235 ERROR - Test 'successfully run space' with workflow id '3d659be9-2e78-400b-82cf-7bc586b2145e' failed on attempt 2 of 3
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26)
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183)
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181)
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138)
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304)
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125)
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70)
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36)
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93)
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93)
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43)
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44)
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284)
at scala.concurrent.Promise.complete(Promise.scala:49)
at scala.concurrent.Promise.complete$(Promise.scala:48)
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183)
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:05:06,252 cromwell-system-akka.dispatchers.api-dispatcher-23 INFO - Unspecified type (Unspecified version) workflow 83833cfd-d2cf-49b1-91e2-f481e832b5d7 submitted
- should successfully run draft3_declaration_chain (1 minute, 5 seconds)
Metadata mismatch for 9f289b57-a9fe-4508-b98d-561979521498 - retrying
2018-08-11 03:05:07,136 WARN - Graceful shutdown took too much time, forcing the shutdown.
2018-08-11 03:05:07,136 WARN - 0 tasks failed to execute before shutdown.
2018-08-11 03:05:07,136 ERROR - Test 'successfully run dot_dir_stuck_running' with workflow id '01b6dcd8-938f-4c09-b89c-46c044a5a885' failed on attempt 1 of 3
centaur.test.CentaurTestException: Unexpected terminal status Failed but was waiting for Succeeded
at centaur.test.CentaurTestException$.apply(CentaurTestException.scala:26)
at centaur.test.Operations$$anon$9.$anonfun$status$2(Test.scala:183)
at centaur.test.Operations$$anon$9.$anonfun$status$2$adapted(Test.scala:181)
at cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:138)
at cats.effect.internals.IORunLoop$RestartCallback.signal(IORunLoop.scala:335)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:356)
at cats.effect.internals.IORunLoop$RestartCallback.apply(IORunLoop.scala:304)
at cats.effect.internals.Callback$AsyncIdempotentCallback.run(Callback.scala:125)
at cats.effect.internals.Trampoline.cats$effect$internals$Trampoline$$immediateLoop(Trampoline.scala:70)
at cats.effect.internals.Trampoline.startLoop(Trampoline.scala:36)
at cats.effect.internals.TrampolineEC$JVMTrampoline.super$startLoop(TrampolineEC.scala:93)
at cats.effect.internals.TrampolineEC$JVMTrampoline.$anonfun$startLoop$1(TrampolineEC.scala:93)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at cats.effect.internals.TrampolineEC$JVMTrampoline.startLoop(TrampolineEC.scala:93)
at cats.effect.internals.Trampoline.execute(Trampoline.scala:43)
at cats.effect.internals.TrampolineEC.execute(TrampolineEC.scala:44)
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284)
at scala.concurrent.Promise.complete(Promise.scala:49)
at scala.concurrent.Promise.complete$(Promise.scala:48)
at scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183)
at scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:38)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2018-08-11 03:05:07,182 cromwell-system-akka.dispatchers.api-dispatcher-68 INFO - Unspecified type (Unspecified version) workflow 163fa5b0-ed5d-49ad-9a8f-1c536d2a2d66 submitted
2018-08-11 03:05:07,270 WARN - Initiated a temporary lockdown because of exception: {"error":"No JSON data was found"}
2018-08-11 03:05:07,271 ERROR - An exception occurred while sending the event to Sentry.
io.sentry.connection.ConnectionException: {"error":"No JSON data was found"}
at io.sentry.connection.HttpConnection.doSend(HttpConnection.java:216)
at io.sentry.connection.AbstractConnection.send(AbstractConnection.java:76)
at io.sentry.connection.AsyncConnection$EventSubmitter.run(AsyncConnection.java:185)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Caused by: java.net.SocketTimeoutException: connect timed out
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673)
at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264)
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177)
at sun.net.www.protocol.https.HttpsURLConnectionImpl.connect(HttpsURLConnectionImpl.java:153)
at io.sentry.connection.HttpConnection.doSend(HttpConnection.java:168)
... 5 common frames omitted
2018-08-11 03:05:07,614 ERROR - Test 'successfu
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