hint.graphql

"""
Example RDF/Turtle:

hnt:A0A024QYV7-Q00653
    bp3:dataSource <http://identifiers.org/HINT> ;
    bp3:displayName "A0A024QYV7-Q00653"^^xsd:string ;
    bp3:evidence   pint:evidence-pubmed_14743216-MI_0007-literature-curated , pint:evidence-pubmed_14743216-MI_0676-literature-curated  ;
    bp3:name "A0A024QYV7-Q00653"^^xsd:string ;
    bp3:participant [
        obo:BFO_0000051 uni:A0A024QYV7 ;
       ] ;
    bp3:participant [
        obo:BFO_0000051 uni:Q00653 ;
       ] ;
    pint:networkVariety "binary"^^xsd:string ;
    pint:accuracy "low"^^xsd:string ;
    a bp3:MolecularInteraction .

Example index.graphql:

type Query {
  hint(iri: [String!], id: String): [HiNT!]!
}

Example GraphQL:

query {
  hint(iri: "http://purl.jp/10/hint/A0A024QYV7-Q00653") {
    iri
    name
    participant
    evidence
    accuracy
  }
}

query {
  hint(id: "A0A024QYV7") {
    iri
    name
    participant
    evidence
    accuracy
  }
}

--- endpoint ---
http://sparql.med2rdf.org/sparql

--- sparql ---
PREFIX : <https://github.com/dbcls/grasp/>
PREFIX obo: <http://purl.obolibrary.org/obo/>
PREFIX pint: <http://purl.jp/10/pint/>
PREFIX dcterms: <http://purl.org/dc/terms/>
PREFIX xsd: <http://www.w3.org/2001/XMLSchema#>
PREFIX hnt: <http://purl.jp/10/hint/>
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX pfm: <http://identifiers.org/Pfam/>
PREFIX bp3: <http://www.biopax.org/release/biopax-level3.owl#>
PREFIX uni: <http://identifiers.org/uniprot/>

CONSTRUCT {
  ?iri :iri ?iri .
  ?iri :display_name ?display_name .
  ?iri :evidence ?evidence .
  ?iri :name ?name .
  ?iri :participant ?pair0 .
  ?iri :participant ?pair1 .
  ?iri :network_variety ?network_variety .
  ?iri :accuracy ?accuracy .
}
WHERE
{
  ?iri
    bp3:dataSource  ?data_source ;
    bp3:displayName ?display_hame ;
    bp3:evidence    ?evidence ;
    bp3:name        ?name ;
    bp3:participant [
        obo:BFO_0000051 ?pair0 ;
       ] ;
    bp3:participant [
        obo:BFO_0000051 ?pair1 ;
       ] ;
    pint:networkVariety ?network_variety ;
    pint:accuracy   ?accuracy ;
    a bp3:MolecularInteraction .

  {{filter-by-iri}}

  FILTER (?pair0 = uni:{{id}} || ?pair1 = uni:{{id}})

#  {{#filter-by pair0 as |id|}}
#    uni:{{id}}
#  {{/filter-by}}
#
#  {{#filter-by pair1 as |id|}}
#    uni:{{id}}
#  {{/filter-by}}
}
"""
type HiNT {
  iri: String!
  display_name: String
  evidence: [String]
  name: String
  participant: [String]
  network_variety: String
  accuracy: String
}