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@kyle-mccarthy
Created January 20, 2021 17:03
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SDF file example (Chemical table file) from pubchem
3
-OEChem-01172103382D
19 19 0 1 0 0 0 0 0999 V2000
5.1350 1.3450 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
6.8671 0.3450 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
2.5369 -0.1550 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
3.4030 1.3450 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
5.1350 0.3450 0.0000 C 0 0 3 0 0 0 0 0 0 0 0 0
6.0010 -0.1550 0.0000 C 0 0 3 0 0 0 0 0 0 0 0 0
4.2690 -0.1550 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
6.0010 -1.1550 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
4.2690 -1.1550 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
5.1350 -1.6550 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
3.4030 0.3450 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
5.6720 0.6550 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0
6.5380 -0.4650 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0
6.5380 -1.4650 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0
3.7320 -1.4650 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0
5.1350 -2.2750 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0
5.6720 1.6550 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0
7.4040 0.0350 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0
2.0000 0.1550 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0
1 5 1 0 0 0 0
1 17 1 0 0 0 0
2 6 1 0 0 0 0
2 18 1 0 0 0 0
3 11 1 0 0 0 0
3 19 1 0 0 0 0
4 11 2 0 0 0 0
5 6 1 0 0 0 0
5 7 1 0 0 0 0
5 12 1 0 0 0 0
6 8 1 0 0 0 0
6 13 1 0 0 0 0
7 9 2 0 0 0 0
7 11 1 0 0 0 0
8 10 2 0 0 0 0
8 14 1 0 0 0 0
9 10 1 0 0 0 0
9 15 1 0 0 0 0
10 16 1 0 0 0 0
M END
> <PUBCHEM_COMPOUND_CID>
3
> <PUBCHEM_COMPOUND_CANONICALIZED>
1
> <PUBCHEM_CACTVS_COMPLEXITY>
229
> <PUBCHEM_CACTVS_HBOND_ACCEPTOR>
4
> <PUBCHEM_CACTVS_HBOND_DONOR>
3
> <PUBCHEM_CACTVS_ROTATABLE_BOND>
1
> <PUBCHEM_CACTVS_SUBSKEYS>
AAADccBgOAAAAAAAAAAAAAAAAAAAAAAAAAAgAAAAAAAAAAAAAAAAGgAACAAADBSggAIACAAAAgCIAiDSCAAAAAAgAAAICAEAAEgJFBYAAQAAUAAF4AAJkYLKAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA==
> <PUBCHEM_IUPAC_OPENEYE_NAME>
5,6-dihydroxycyclohexa-1,3-diene-1-carboxylic acid
> <PUBCHEM_IUPAC_CAS_NAME>
5,6-dihydroxy-1-cyclohexa-1,3-dienecarboxylic acid
> <PUBCHEM_IUPAC_NAME_MARKUP>
5,6-dihydroxycyclohexa-1,3-diene-1-carboxylic acid
> <PUBCHEM_IUPAC_NAME>
5,6-dihydroxycyclohexa-1,3-diene-1-carboxylic acid
> <PUBCHEM_IUPAC_SYSTEMATIC_NAME>
5,6-bis(oxidanyl)cyclohexa-1,3-diene-1-carboxylic acid
> <PUBCHEM_IUPAC_TRADITIONAL_NAME>
5,6-dihydroxycyclohexa-1,3-diene-1-carboxylic acid
> <PUBCHEM_IUPAC_INCHI>
InChI=1S/C7H8O4/c8-5-3-1-2-4(6(5)9)7(10)11/h1-3,5-6,8-9H,(H,10,11)
> <PUBCHEM_IUPAC_INCHIKEY>
INCSWYKICIYAHB-UHFFFAOYSA-N
> <PUBCHEM_XLOGP3_AA>
-0.3
> <PUBCHEM_EXACT_MASS>
156.042259
> <PUBCHEM_MOLECULAR_FORMULA>
C7H8O4
> <PUBCHEM_MOLECULAR_WEIGHT>
156.14
> <PUBCHEM_OPENEYE_CAN_SMILES>
C1=CC(C(C(=C1)C(=O)O)O)O
> <PUBCHEM_OPENEYE_ISO_SMILES>
C1=CC(C(C(=C1)C(=O)O)O)O
> <PUBCHEM_CACTVS_TPSA>
77.8
> <PUBCHEM_MONOISOTOPIC_WEIGHT>
156.042259
> <PUBCHEM_TOTAL_CHARGE>
0
> <PUBCHEM_HEAVY_ATOM_COUNT>
11
> <PUBCHEM_ATOM_DEF_STEREO_COUNT>
0
> <PUBCHEM_ATOM_UDEF_STEREO_COUNT>
2
> <PUBCHEM_BOND_DEF_STEREO_COUNT>
0
> <PUBCHEM_BOND_UDEF_STEREO_COUNT>
0
> <PUBCHEM_ISOTOPIC_ATOM_COUNT>
0
> <PUBCHEM_COMPONENT_COUNT>
1
> <PUBCHEM_CACTVS_TAUTO_COUNT>
-1
> <PUBCHEM_COORDINATE_TYPE>
1
5
255
> <PUBCHEM_BONDANNOTATIONS>
5 1 3
6 2 3
$$$$
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