kylebaron

---
title: "reproducible rmd"
output: pdf_document
---

```{r setup, include=FALSE}
knitr::opts_chunk$set(echo = TRUE)
```

kylebaron

library(mrgsolve)
#> 
#> Attaching package: 'mrgsolve'
#> The following object is masked from 'package:stats':
#> 
#>     filter
library(dplyr)
#> 

kylebaron

library(mrgsolve)
#> 
#> Attaching package: 'mrgsolve'
#> The following object is masked from 'package:stats':
#> 
#>     filter
library(dplyr)
#> 
#> Attaching package: 'dplyr'

kylebaron

library(mrgsolve)

mod <- mread("pk2", modlib())
#> Building pk2 ... done.

mod %>% 
  ev(amt  = 100, rate = 3) %>% 
  mrgsim(end = 48, delta = 0.1) %>% 
 plot

kylebaron

fcmt.R

kyleb Mon Mar 19 16:56:57 2018

library(mrgsolve)

code <- '
$PARAM CL = 1, V = 30, KA = 1, F1 = 0.5, F2 = 1

kylebaron

library(mrgsolve)

mod <- mread("irm1", modlib())

## Compiling irm1 ...

## done.

kylebaron

library(mrgsolve)


code <- '
$PARAM CL = 1, V = 5, D1 = 1
$PKMODEL cmt="CENT"
$MAIN
D_CENT = D1;
'

kylebaron

set_my_path <- function() {
  FLAG <- "RTOOLS_WAS_SET"
  rtools <- 'C:\\RBuildTools\\3.3\\bin;C:\\RBuildTools\\3.3\\gcc-4.6.3\\bin;'
  if(Sys.getenv(FLAG)=="") {
    message("setting your path")
    Sys.setenv(PATH=paste0(rtools,Sys.getenv("PATH")))
   do.call(Sys.setenv,setNames(list("yes"),FLAG))
  }
  if(!grepl(rtools,Sys.getenv("PATH"),fixed=TRUE)) {

kylebaron

# I don't know what the path to Rbuildtools is for you.  
# Mine is
C:\\RBuildTools\\3.3\\bin
C:\\RBuildTools\\3.3\\gcc-4.6.3\\bin
## Look in your computer for these two equivalent directories; version number (3.3) might be different

### START .Rprofile  ***** the first character of the file name is a dot (period) *******
## So my .Rprofile would be 

rtools <- "C:\\RBuildTools\\3.3\\bin;C:\\RBuildTools\\3.3\\gcc-4.6.3\\bin;"

kylebaron

clang++ -std=c++11 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I../inst/include/ -DCPPTOML_USE_MAP -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Users/kyleb/Rlibs/lib/Rcpp/include"   -fPIC  -Wall -mtune=core2 -g -O2 -c RcppExports.cpp -o RcppExports.o
clang++ -std=c++11 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I../inst/include/ -DCPPTOML_USE_MAP -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Users/kyleb/Rlibs/lib/Rcpp/include"   -fPIC  -Wall -mtune=core2 -g -O2 -c parse.cpp -o parse.o
In file included from parse.cpp:22:
In file included from ../inst/include/cpptoml.h:10:
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/algorithm:1720:21: error: conversion from 'Rcpp::internal::generic_proxy<19>' to 'double' is ambiguous
        *__result = *__first;
                    ^~~~~~~~
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/