Just use your own schema builder

SchemaBuilder.php

<?php

namespace App;

use Closure;
use Illuminate\Database\Schema\Builder;

class SchemaBuilder extends Builder
{
    public function create($table, Closure $callback)
    {
        $required = ['created_at', 'updated_at', 'deleted_at'];

        $blueprint = $this->createBlueprint($table);

        $blueprint->create();

        $callback($blueprint);

        $diff = array_diff($required, array_pluck($blueprint->getColumns(), 'name'));

        foreach ($diff as $missing) {
            $blueprint->timestamp($missing)->nullable();
        }

        $this->build($blueprint);
    }
}

somemigration.php

<?php

$sb = app('App\SchemaBuilder');

$sb->create('testit', function (Blueprint $table) {
  
});

////////

artisan migrate --pretend

SomeRandomMigration: create table "testit" ("created_at" datetime null, "updated_at" datetime null, "deleted_at" datetime null)