test.cpp

#include <iostream>
#include <shogun/base/init.h>
#include <shogun/lib/config.h>
#include <shogun/lib/SGMatrix.h>
#include <shogun/base/some.h>
#include <shogun/io/streaming/StreamingFileFromDenseFeatures.h>
#include <shogun/features/DenseFeatures.h>
#include <shogun/features/streaming/generators/MeanShiftDataGenerator.h>
#include <shogun/kernel/GaussianKernel.h>
#include <shogun/statistical_testing/QuadraticTimeMMD.h>
#include <shogun/statistical_testing/LinearTimeMMD.h>
#include <shogun/io/CSVFile.h>
#include <shogun/io/SGIO.h>
#include <algorithm>

using namespace shogun;
using namespace std;

float64_t test1()
{
	auto f_features_p = some<CCSVFile>("../../data/toy/two_sample_test_gaussian.dat");
	auto f_features_q = some<CCSVFile>("../../data/toy/two_sample_test_laplace.dat");

	auto features_p = some<CDenseFeatures<float64_t>>(f_features_p);
	auto features_q = some<CDenseFeatures<float64_t>>(f_features_q);

	auto mmd = some<CLinearTimeMMD>(features_p, features_q);
	mmd->set_num_samples_p(250);
	mmd->set_num_samples_q(250);
	mmd->set_num_blocks_per_burst(1000);
	mmd->set_kernel(some<CGaussianKernel>(128, 8));
	mmd->set_statistic_type(ST_UNBIASED_FULL);
	double statistic = mmd->compute_statistic();

	return statistic;
}

float64_t test2()
{
	auto f_features_p = some<CCSVFile>("../../data/toy/two_sample_test_gaussian.dat");
	auto f_features_q = some<CCSVFile>("../../data/toy/two_sample_test_laplace.dat");

	auto features_p = some<CDenseFeatures<float64_t>>(f_features_p);
	auto features_q = some<CDenseFeatures<float64_t>>(f_features_q);

	auto streaming_features_p = some<CStreamingDenseFeatures<float64_t>>(features_p);
	auto streaming_features_q = some<CStreamingDenseFeatures<float64_t>>(features_q);

	auto mmd = some<CLinearTimeMMD>(streaming_features_p, streaming_features_q);
	mmd->set_num_samples_p(250);
	mmd->set_num_samples_q(250);
	mmd->set_num_blocks_per_burst(1000);
	mmd->set_kernel(some<CGaussianKernel>(128, 8));
	mmd->set_statistic_type(ST_UNBIASED_FULL);
	double statistic = mmd->compute_statistic();

	return statistic;
}

void test3()
{
	auto f_features_p = some<CCSVFile>("../../data/toy/two_sample_test_gaussian.dat");
	auto features_p = some<CDenseFeatures<float64_t>>(f_features_p);
	auto streaming_features_p = some<CStreamingDenseFeatures<float64_t>>(features_p);

	auto to_stream = 4;
	streaming_features_p->start_parser();

	auto streamed_p = streaming_features_p->get_streamed_features(to_stream);
	cout << streamed_p->get_num_vectors() << endl;

	streaming_features_p->end_parser();
}

int main(int argc, char** argv)
{
	init_shogun_with_defaults();
//	get_global_io()->set_loglevel(MSG_DEBUG);
	get_global_io()->set_location_info(MSG_FUNCTION);
	cout << test1() << endl;
	cout << test2() << endl;
	test3();
	exit_shogun();
	return 0;
}